@factoidal/core 0.1.0

package/CHANGELOG.md

@@ -0,0 +1,121 @@
+# Changelog
+
+## 0.1.0 — First published release (as `@factoidal/core`)
+
+- SPARQL 1.1 §17.6 extension functions
+  ([#463](https://github.com/danbri/factoidal/issues/463)),
+  Comunica-style: `registerExtensionFunction(iri, fn)` /
+  `unregisterExtensionFunction(iri)` / `clearExtensionFunctions()`.
+  `fn` may be sync or async; it receives the evaluated arguments as
+  SRJ-style term objects and returns a term object, a JS primitive,
+  or a Promise of either. Dispatch semantics are F*-specified
+  (SPARQL11.Algebra.fst's E_FunctionCall arm consults the registry
+  LAST; an unregistered IRI is the spec-required error — unbound in
+  SELECT/BIND position, row dropped in FILTER position). Async
+  functions run over the synchronous extracted engine via a bounded
+  memoised re-evaluation trampoline in `lib/api.js`.
+
+- Final name: `@factoidal/core`, published under the `@factoidal` npm
+  org (owner decision, 2026-08-22). Everything under "Unreleased"
+  below ships in this first cut. The `private` flag and the
+  publish-blocking `prepublishOnly` guard are removed; `prepublishOnly`
+  now runs the package test suite instead.
+- The wasm bundle (`factoidal.wasm.js` + assets) is rebuilt in sync
+  with the js bundle. The previous in-tree wasm build predated the
+  2026-08-15 COTTAS UTF-8 writer fix (issue #445) and its
+  format-compatibility gate rejected stores written by the current js
+  bundle (caught by the wasm/js parity test in `test/`).
+
+## Unreleased
+
+- Package renamed from the placeholder `@danbri/foafos` to `factoidal`
+  (issue #403). The package was never published under the old name, so
+  there is no npm-registry alias or deprecation notice to add -- this
+  is a rename of unpublished scaffolding, not a breaking change to a
+  released package.
+- `coreRdfsClosure`/`coreRdfsCheck`/`rhoDfClosure`/`rhoDfFragmentCheck`/
+  `rdfsPlusClosure`/`owlIsConsistent`/`owlEntails` now exported from
+  `factoidal/wasm` (previously js_of_ocaml-only); `coreRdfsClosure`/
+  `coreRdfsCheck`/`rhoDfClosure`/`rhoDfFragmentCheck`/`rdfsPlusClosure`
+  added to `factoidal/fn` (FnDataset-returning wrappers around the
+  certified ρdf closure family; `owlIsConsistent`/`owlEntails` were
+  already there). No new engine logic -- these functions were already
+  wired into the npm-entry ABI (`bin/npm-entry/entry_jsoo.ml`) and
+  `lib/api.js`'s `buildApi()`; this closes a wrapper-surface gap
+  between `index.js`/`browser.js` (which had them) and `wasm.js`/
+  `fn.js` (which didn't). See docs/theorem-registry.md for
+  `rho_df_closure`'s decides-iff guarantee.
+- `version.json` gains a machine-readable `claims` block (issue #403's
+  G2 item): a summary of theorem-backed guarantees, each entry naming
+  the exact F* theorem, its file, and the docs/theorem-registry.md
+  section to check it against -- never a bare assertion. `build-
+  ocaml.sh npm` now preserves this block across rebuilds.
+- Browser-side durable-UPDATE persistence (issue #282): `browser.js`
+  gains `deltaLogOpen`/`deltaLogAppend`/`deltaLogReadAllHex`/
+  `deltaLogMerge`/`deltaLogDestroy` (IndexedDB-backed, survives page
+  reloads and browser restarts), plus `deltaBatchToHex`/
+  `deltaMergeApplyBrowser` on the npm-entry ABI. Every byte moved is
+  produced/consumed by the F*-verified `RDF_Store_Columnar_DeltaLog`/
+  `RDF_Store_Columnar_DeltaMerge` modules the native on-disk delta log
+  (`factoidal serve --rw --delta-log`) uses -- see
+  `docs/designissues/2026-07-06-browser-persistence.md` for the v1
+  architecture decision (IndexedDB vs. OPFS), the crash/reload
+  guarantee mapping, and the quota/eviction honesty section. Prototype
+  scope: no compaction, no `navigator.storage.persist()` wiring yet
+  (both named as staged next steps); supported update ops are
+  `INSERT DATA`/`DELETE DATA`/`CLEAR`/`DROP`/`CREATE`, same subset the
+  native `--rw` path accepts.
+- CSVW csv2rdf (`csvwToRdf`) added to the npm-entry ABI, the typed API
+  (`index.js`/`wasm.js`), and the functional API (`factoidal/fn`:
+  `fromCsvw`): raw CSV text + an optional CSVW metadata document
+  (tabular-metadata JSON; omitted = schema inferred from the header
+  row) to a Dataset, in `standard` (csvw:TableGroup/Table/Row wrapper)
+  or `minimal` (bare cell triples) mode. `capabilities()` gained a
+  matching `csvw` probe. Engine modules: `CSVW.Metadata.fst` /
+  `CSVW.URITemplate.fst` / `CSVW.Conversion.fst` (measured against the
+  vendored W3C csv2rdf suite -- see the CSVW program plan's stage
+  table for coverage and known gaps: datatype `format` facets,
+  list-valued cells, and full inherited-property propagation are not
+  yet implemented).
+- SHACL Core (`shaclValidate`), ShEx (`shexValidate`), RDFS/OWL-RL
+  closure (`owlClosure`), RML (`rmlMap`), and RIF Core
+  (`rifEval`) added to the npm-entry ABI and the typed API
+  (`index.js`/`wasm.js`) and the functional API (`factoidal/fn`:
+  `validate`/`shex`/`fromMapping`/`rif`). `jsonldToRdf` exposes
+  JSON-LD-specific options (`base`/`rdfDirection`/`expandContext`/
+  `processingMode`); plain `parse(text, {format:'jsonld'})` through
+  the npm-entry bundle also now works (previously an unhandled
+  format-dispatch case). `capabilities()` gained matching
+  `shacl`/`shex`/`owlClosure`/`rml`/`jsonld`/`rif` probes.
+- Typed public API: `parse` -> RDF/JS `Dataset`, `query` ->
+  `Bindings[]` (Maps of variable -> RDF/JS term) | boolean | Dataset,
+  `update`, `serialize`, `canonicalize` (RDFC-1.0), `capabilities`.
+- RDF/JS data model (`rdfjs.js`): spec-compliant DataFactory + terms
+  with `.equals()`, DatasetCore `Dataset`, converters to/from the
+  engine's N-Quads interchange text. Exported as `factoidal/rdfjs`.
+- `factoidal/wasm`: same API on the wasm_of_ocaml engine (Node >= 22).
+- npm-entry ABI consumer (`bin/npm-entry/entry_jsoo.ml` in the repo):
+  persistent string/JSON ABI enabling CONSTRUCT, UPDATE and
+  canonicalize; the API falls back to argv-driving the CLI bundle
+  until that bundle is built and staged.
+- Rewritten `index.d.ts` with self-contained RDF/JS typings; the old
+  SRJ-shaped `query()` lives on as `queryRaw()`.
+- `node:test` unit suite (`npm test`); entry-dependent tests skip with
+  reason "pending npm-entry build".
+
+## 0.1.0-alpha.0 — Initial scaffold, unpublished
+
+Directory layout committed to the main repo under `npm/factoidal/`.
+Not yet published to the npm registry.
+
+- `package.json` with dual CJS (`index.js`) / ESM (`index.mjs`)
+  entry points, a `browser` condition, and a TypeScript declaration
+  file (`index.d.ts`).
+- `index.js` wraps the js_of_ocaml-compiled `factoidal.js` bundle in
+  an `async` `query(data, query, options)` API with `dataFormat`,
+  `entail`, and `output` options.
+- `browser.js` mirrors the same API for browsers, fetching
+  `factoidal.js` via `fetch()` relative to the module URL.
+- `build-ocaml.sh npm` target (in the repo root's
+  `formal/fstar/build-ocaml.sh`) populates this directory from the
+  existing extraction output.

package/LICENSE

@@ -0,0 +1,201 @@
+
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
+
+      "License" shall mean the terms and conditions for use, reproduction,
+      and distribution as defined by Sections 1 through 9 of this document.
+
+      "Licensor" shall mean the copyright owner or entity authorized by
+      the copyright owner that is granting the License.
+
+      "Legal Entity" shall mean the union of the acting entity and all
+      other entities that control, are controlled by, or are under common
+      control with that entity. For the purposes of this definition,
+      "control" means (i) the power, direct or indirect, to cause the
+      direction or management of such entity, whether by contract or
+      otherwise, or (ii) ownership of fifty percent (50%) or more of the
+      outstanding shares, or (iii) beneficial ownership of such entity.
+
+      "You" (or "Your") shall mean an individual or Legal Entity
+      exercising permissions granted by this License.
+
+      "Source" form shall mean the preferred form for making modifications,
+      including but not limited to software source code, documentation
+      source, and configuration files.
+
+      "Object" form shall mean any form resulting from mechanical
+      transformation or translation of a Source form, including but
+      not limited to compiled object code, generated documentation,
+      and conversions to other media types.
+
+      "Work" shall mean the work of authorship, whether in Source or
+      Object form, made available under the License, as indicated by a
+      copyright notice that is included in or attached to the work
+      (an example is provided in the Appendix below).
+
+      "Derivative Works" shall mean any work, whether in Source or Object
+      form, that is based on (or derived from) the Work and for which the
+      editorial revisions, annotations, elaborations, or other modifications
+      represent, as a whole, an original work of authorship. For the purposes
+      of this License, Derivative Works shall not include works that remain
+      separable from, or merely link (or bind by name) to the interfaces of,
+      the Work and Derivative Works thereof.
+
+      "Contribution" shall mean any work of authorship, including
+      the original version of the Work and any modifications or additions
+      to that Work or Derivative Works thereof, that is intentionally
+      submitted to the Licensor for inclusion in the Work by the copyright owner
+      or by an individual or Legal Entity authorized to submit on behalf of
+      the copyright owner. For the purposes of this definition, "submitted"
+      means any form of electronic, verbal, or written communication sent
+      to the Licensor or its representatives, including but not limited to
+      communication on electronic mailing lists, source code control systems,
+      and issue tracking systems that are managed by, or on behalf of, the
+      Licensor for the purpose of discussing and improving the Work, but
+      excluding communication that is conspicuously marked or otherwise
+      designated in writing by the copyright owner as "Not a Contribution."
+
+      "Contributor" shall mean Licensor and any individual or Legal Entity
+      on behalf of whom a Contribution has been received by the Licensor and
+      subsequently incorporated within the Work.
+
+   2. Grant of Copyright License. Subject to the terms and conditions of
+      this License, each Contributor hereby grants to You a perpetual,
+      worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+      copyright license to reproduce, prepare Derivative Works of,
+      publicly display, publicly perform, sublicense, and distribute the
+      Work and such Derivative Works in Source or Object form.
+
+   3. Grant of Patent License. Subject to the terms and conditions of
+      this License, each Contributor hereby grants to You a perpetual,
+      worldwide, non-exclusive, no-charge, royalty-free, irrevocable
+      (except as stated in this section) patent license to make, have made,
+      use, offer to sell, sell, import, and otherwise transfer the Work,
+      where such license applies only to those patent claims licensable
+      by such Contributor that are necessarily infringed by their
+      Contribution(s) alone or by combination of their Contribution(s)
+      with the Work to which such Contribution(s) was submitted. If You
+      institute patent litigation against any entity (including a
+      cross-claim or counterclaim in a lawsuit) alleging that the Work
+      or a Contribution incorporated within the Work constitutes direct
+      or contributory patent infringement, then any patent licenses
+      granted to You under this License for that Work shall terminate
+      as of the date such litigation is filed.
+
+   4. Redistribution. You may reproduce and distribute copies of the
+      Work or Derivative Works thereof in any medium, with or without
+      modifications, and in Source or Object form, provided that You
+      meet the following conditions:
+
+      (a) You must give any other recipients of the Work or
+          Derivative Works a copy of this License; and
+
+      (b) You must cause any modified files to carry prominent notices
+          stating that You changed the files; and
+
+      (c) You must retain, in the Source form of any Derivative Works
+          that You distribute, all copyright, patent, trademark, and
+          attribution notices from the Source form of the Work,
+          excluding those notices that do not pertain to any part of
+          the Derivative Works; and
+
+      (d) If the Work includes a "NOTICE" text file as part of its
+          distribution, then any Derivative Works that You distribute must
+          include a readable copy of the attribution notices contained
+          within such NOTICE file, excluding any notices that do not
+          pertain to any part of the Derivative Works, in at least one
+          of the following places: within a NOTICE text file distributed
+          as part of the Derivative Works; within the Source form or
+          documentation, if provided along with the Derivative Works; or,
+          within a display generated by the Derivative Works, if and
+          wherever such third-party notices normally appear. The contents
+          of the NOTICE file are for informational purposes only and
+          do not modify the License. You may add Your own attribution
+          notices within Derivative Works that You distribute, alongside
+          or as an addendum to the NOTICE text from the Work, provided
+          that such additional attribution notices cannot be construed
+          as modifying the License.
+
+      You may add Your own copyright statement to Your modifications and
+      may provide additional or different license terms and conditions
+      for use, reproduction, or distribution of Your modifications, or
+      for any such Derivative Works as a whole, provided Your use,
+      reproduction, and distribution of the Work otherwise complies with
+      the conditions stated in this License.
+
+   5. Submission of Contributions. Unless You explicitly state otherwise,
+      any Contribution intentionally submitted for inclusion in the Work
+      by You to the Licensor shall be under the terms and conditions of
+      this License, without any additional terms or conditions.
+      Notwithstanding the above, nothing herein shall supersede or modify
+      the terms of any separate license agreement you may have executed
+      with Licensor regarding such Contributions.
+
+   6. Trademarks. This License does not grant permission to use the trade
+      names, trademarks, service marks, or product names of the Licensor,
+      except as required for reasonable and customary use in describing the
+      origin of the Work and reproducing the content of the NOTICE file.
+
+   7. Disclaimer of Warranty. Unless required by applicable law or
+      agreed to in writing, Licensor provides the Work (and each
+      Contributor provides its Contributions) on an "AS IS" BASIS,
+      WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
+      implied, including, without limitation, any warranties or conditions
+      of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
+      PARTICULAR PURPOSE. You are solely responsible for determining the
+      appropriateness of using or redistributing the Work and assume any
+      risks associated with Your exercise of permissions under this License.
+
+   8. Limitation of Liability. In no event and under no legal theory,
+      whether in tort (including negligence), contract, or otherwise,
+      unless required by applicable law (such as deliberate and grossly
+      negligent acts) or agreed to in writing, shall any Contributor be
+      liable to You for damages, including any direct, indirect, special,
+      incidental, or consequential damages of any character arising as a
+      result of this License or out of the use or inability to use the
+      Work (including but not limited to damages for loss of goodwill,
+      work stoppage, computer failure or malfunction, or any and all
+      other commercial damages or losses), even if such Contributor
+      has been advised of the possibility of such damages.
+
+   9. Accepting Warranty or Additional Liability. While redistributing
+      the Work or Derivative Works thereof, You may choose to offer,
+      and charge a fee for, acceptance of support, warranty, indemnity,
+      or other liability obligations and/or rights consistent with this
+      License. However, in accepting such obligations, You may act only
+      on Your own behalf and on Your sole responsibility, not on behalf
+      of any other Contributor, and only if You agree to indemnify,
+      defend, and hold each Contributor harmless for any liability
+      incurred by, or claims asserted against, such Contributor by reason
+      of your accepting any such warranty or additional liability.
+
+   END OF TERMS AND CONDITIONS
+
+   APPENDIX: How to apply the Apache License to your work.
+
+      To apply the Apache License to your work, attach the following
+      boilerplate notice, with the fields enclosed by brackets "[]"
+      replaced with your own identifying information. (Don't include
+      the brackets!)  The text should be enclosed in the appropriate
+      comment syntax for the file format. Please also get an in-depth
+      understanding of this license by reading the FAQ at
+      http://www.apache.org/foundation/license-faq.html
+
+   Copyright [yyyy] [name of copyright owner]
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.