@evomap/evolver 1.89.18 → 1.89.20

package/index.js

@@ -2817,6 +2817,165 @@ async function main() {
       console.log('');
     }
 
+  } else if (command === 'trajectory-export') {
+    const allowPartial = args.includes('--allow-partial');
+    const runtimeSessions = args.includes('--runtime-sessions');
+    // Strict-by-default marking gate (v1): runtime-session discovery only
+    // collects sessions evolver actively marked (session-start hook), minus
+    // those the gateway already captured. These flags open each gate back up.
+    const includeUnmarked = args.includes('--include-unmarked');
+    const includeGatewayCaptured = args.includes('--include-gateway-captured');
+    try {
+      const optionValue = (name) => {
+        let value;
+        for (let i = 0; i < args.length; i += 1) {
+          const arg = args[i];
+          if (arg === name) {
+            if (i + 1 >= args.length || String(args[i + 1]).startsWith('--')) {
+              throw new Error('missing value for ' + name);
+            }
+            value = String(args[i + 1]);
+          } else if (typeof arg === 'string' && arg.startsWith(name + '=')) {
+            value = arg.slice(name.length + 1);
+          }
+        }
+        return value;
+      };
+      const optionValues = (name) => {
+        const values = [];
+        for (let i = 0; i < args.length; i += 1) {
+          const arg = args[i];
+          if (arg === name) {
+            if (i + 1 >= args.length || String(args[i + 1]).startsWith('--')) {
+              throw new Error('missing value for ' + name);
+            }
+            values.push(String(args[i + 1]));
+          } else if (typeof arg === 'string' && arg.startsWith(name + '=')) {
+            values.push(arg.slice(name.length + 1));
+          }
+        }
+        return values;
+      };
+      const input = optionValue('--input');
+      const output = optionValue('--output');
+      const runtimeSessionDirs = optionValues('--runtime-session-dir');
+      const nodeSecretInline = optionValue('--node-secret');
+      const nodeSecretFile = optionValue('--node-secret-file');
+      const nodeSecretEnv = optionValue('--node-secret-env');
+      const hubPrivateKeyFile = optionValue('--hub-private-key');
+      const nodeSecretKeyringFile = optionValue('--node-secret-keyring');
+      const markedSessionsFile = optionValue('--marked-sessions-file');
+      let nodeSecret;
+      let hubPrivateKey;
+      let nodeSecretKeyring;
+      const nodeSecretSourceCount = [nodeSecretInline, nodeSecretFile, nodeSecretEnv]
+        .filter((value) => value !== undefined).length;
+      if (nodeSecretSourceCount > 1) {
+        throw new Error('use only one node secret source');
+      }
+      if (nodeSecretInline !== undefined) {
+        if (!nodeSecretInline) throw new Error('missing value for --node-secret');
+        if (fs.existsSync(nodeSecretInline)) {
+          try {
+            nodeSecret = fs.readFileSync(nodeSecretInline, 'utf8').trim();
+          } catch (readErr) {
+            const err = new Error('node secret file is not readable: ' + nodeSecretInline);
+            err.cause = readErr;
+            throw err;
+          }
+          if (!nodeSecret) throw new Error('node secret file is empty');
+        } else {
+          nodeSecret = String(nodeSecretInline).trim();
+          if (!nodeSecret) throw new Error('node secret is empty');
+        }
+      }
+      if (nodeSecretFile !== undefined) {
+        if (!nodeSecretFile) throw new Error('missing path for --node-secret-file');
+        try {
+          nodeSecret = fs.readFileSync(nodeSecretFile, 'utf8').trim();
+        } catch (readErr) {
+          const err = new Error('node secret file is not readable: ' + nodeSecretFile);
+          err.cause = readErr;
+          throw err;
+        }
+        if (!nodeSecret) throw new Error('node secret file is empty');
+      }
+      if (nodeSecretEnv !== undefined) {
+        if (!/^[A-Za-z_][A-Za-z0-9_]*$/.test(nodeSecretEnv)) {
+          throw new Error('invalid environment variable name for --node-secret-env');
+        }
+        nodeSecret = String(process.env[nodeSecretEnv] || '').trim();
+        if (!nodeSecret) throw new Error('node secret environment variable is empty or unset');
+      }
+      if (hubPrivateKeyFile !== undefined) {
+        if (!hubPrivateKeyFile) throw new Error('missing path for --hub-private-key');
+        try {
+          hubPrivateKey = fs.readFileSync(hubPrivateKeyFile, 'utf8');
+        } catch (readErr) {
+          const err = new Error('hub private key file is not readable: ' + hubPrivateKeyFile);
+          err.cause = readErr;
+          throw err;
+        }
+        if (!String(hubPrivateKey || '').trim()) throw new Error('hub private key file is empty');
+      }
+      if (nodeSecretKeyringFile !== undefined) {
+        if (!nodeSecretKeyringFile) throw new Error('missing path for --node-secret-keyring');
+        try {
+          nodeSecretKeyring = JSON.parse(fs.readFileSync(nodeSecretKeyringFile, 'utf8'));
+        } catch (readErr) {
+          const err = new Error('node secret keyring file is not readable or invalid JSON: ' + nodeSecretKeyringFile);
+          err.cause = readErr;
+          throw err;
+        }
+      }
+      const { writeTrajectories } = require('./src/gep/trajectoryExport');
+      const result = writeTrajectories({
+        input,
+        output,
+        nodeSecret,
+        nodeSecretKeyring,
+        hubPrivateKey,
+        allowPartial,
+        runtimeSessions: runtimeSessions ? true : undefined,
+        runtimeSessionDirs,
+        markedSessionsFile,
+        includeUnmarked: includeUnmarked ? true : undefined,
+        includeGatewayCaptured: includeGatewayCaptured ? true : undefined,
+      });
+      console.log('[trajectory-export] Wrote ' + result.trajectories.length + ' trajector' + (result.trajectories.length === 1 ? 'y' : 'ies') + ' to ' + result.outputPath);
+      console.log('[trajectory-export] Read ' + result.rowsRead + ' trace row(s) and ' + (result.sessionTurnsRead || 0) + ' session turn(s) from ' + (result.filesRead || 0) + ' file(s).');
+      if (result.sessionFilesRead > 0) {
+        console.log('[trajectory-export] Converted ' + result.sessionFilesRead + ' runtime session file(s).');
+      }
+      if (result.runtimeSessionDiscovery && result.runtimeSessionDiscovery.enabled) {
+        console.log('[trajectory-export] Runtime session discovery is local-only; no Hub upload is performed.');
+        console.log('[trajectory-export] Runtime discovery scanned '
+          + result.runtimeSessionDiscovery.dirsScanned + ' Codex/Claude dir(s), matched '
+          + result.runtimeSessionDiscovery.filesMatched + ' workspace session file(s).');
+        const mg = result.runtimeSessionDiscovery.markGate;
+        if (mg) {
+          console.log('[trajectory-export] Marking gate: enforce_marked=' + mg.enforceMarked
+            + ', exclude_gateway_captured=' + mg.excludeGatewayCaptured
+            + '; marked_registry=' + mg.markedSessionCount
+            + ', gateway_captured=' + mg.gatewayCapturedCount
+            + ', excluded_unmarked=' + mg.excludedByMark
+            + ', excluded_gateway=' + mg.excludedByGateway + '.');
+        }
+      }
+      if (result.stats) {
+        console.log('[trajectory-export] Scanned ' + result.stats.rowsScanned
+          + ' row(s); encrypted=' + result.stats.encryptedRows
+          + ', skipped_missing_secret=' + result.stats.skippedMissingSecret
+          + ', decrypt_failures=' + result.stats.decryptFailures
+          + ', invalid_json=' + result.stats.invalidJson
+          + ', session_invalid_json=' + (result.stats.sessionInvalidJson || 0)
+          + ', non_prism=' + result.stats.nonPrismSkipped + '.');
+      }
+    } catch (error) {
+      console.error('[trajectory-export] Failed: ' + (error && error.message || error));
+      process.exit(1);
+    }
+
   } else if (command === 'webui') {
     const portFlag = args.find(a => typeof a === 'string' && a.startsWith('--port='));
     const port = portFlag ? Number(portFlag.slice('--port='.length)) : undefined;
@@ -3296,7 +3455,7 @@ async function main() {
     }
 
   } else {
-    console.log(`Usage: node index.js [run|/evolve|login|logout|proxy-token|solidify|review|distill|fetch|sync|asset-log|webui|setup-hooks|reuse|publish|recipe|buy|orders|verify|atp|atp-complete|experiment] [--loop]
+    console.log(`Usage: node index.js [run|/evolve|login|logout|proxy-token|solidify|review|distill|fetch|sync|asset-log|trajectory-export|webui|setup-hooks|reuse|publish|recipe|buy|orders|verify|atp|atp-complete|experiment] [--loop]
   - login                      (authorize this device via the hub, gh-auth-login style; stores an OAuth token used instead of node_secret)
   - logout                     (remove the stored OAuth token)
   - proxy-token                (print the local proxy bearer token for command-backed client auth)
@@ -3345,6 +3504,29 @@ async function main() {
     - --last=<N>               (show last N entries)
     - --since=<ISO_date>       (entries after date)
     - --json                   (raw JSON output)
+  - trajectory-export flags:
+    - --input=<path>|--input <path>
+                                (proxy trace JSONL, Claude/Codex/Cursor session JSONL, or directory; default: platform trace file)
+    - --output=<path>|--output <path>
+                                (output JSONL; default: ./coding-trajectories.jsonl)
+    - --runtime-sessions        (local-only: also scan current-workspace Codex/Claude JSONL from ~/.codex/sessions and ~/.claude/projects; env: EVOLVER_TRAJECTORY_RUNTIME_SESSIONS=1)
+    - --runtime-session-dir=<path>|--runtime-session-dir <path>
+                                (local-only: extra Codex/Claude runtime session directory; may be repeated)
+    - --include-unmarked        (collect runtime sessions even if evolver did not actively mark them; default: strict — only marked sessions are collected; env: EVOLVER_TRAJECTORY_INCLUDE_UNMARKED=1)
+    - --include-gateway-captured (collect runtime sessions even if the proxy gateway already captured them; default: strict — gateway-captured sessions are skipped; env: EVOLVER_TRAJECTORY_INCLUDE_GATEWAY_CAPTURED=1)
+    - --marked-sessions-file=<path>|--marked-sessions-file <path>
+                                (override the evolver-marked-sessions registry path; default: <trace-dir>/marked-sessions.jsonl; env: EVOLVER_MARKED_SESSIONS_FILE)
+    - --allow-partial           (skip unreadable encrypted rows instead of failing the whole export)
+    - --node-secret=<hex|path>|--node-secret <hex|path>
+                                (read node secret from an existing local file, otherwise use the literal value)
+    - --node-secret-file=<path>|--node-secret-file <path>
+                                (read node secret from a local file)
+    - --node-secret-env=<name>|--node-secret-env <name>
+                                (read node secret from an environment variable)
+    - --node-secret-keyring=<path>|--node-secret-keyring <path>
+                                (read versioned node secrets from a JSON file)
+    - --hub-private-key=<path>|--hub-private-key <path>
+                                (decrypt hub_key_envelope trace rows with a local private key)
   - webui flags:
     - --port=<N>               (local Web UI port, default 19821)
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@evomap/evolver",
-  "version": "1.89.18",
+  "version": "1.89.20",
   "description": "A GEP-powered self-evolution engine for AI agents. Features automated log analysis and Genome Evolution Protocol (GEP) for auditable, reusable evolution assets.",
   "main": "index.js",
   "bin": {
@@ -41,7 +41,7 @@
     "@evomap/atp-sdk": "^0.1.0",
     "@evomap/gep-sdk": "^1.5.0",
     "dotenv": "^16.4.7",
-    "undici": "^7.0.0"
+    "undici": "^7.28.0"
   },
   "devDependencies": {
     "javascript-obfuscator": "^5.4.1"
@@ -49,6 +49,11 @@
   "optionalDependencies": {
     "@napi-rs/keyring": "^1.1.6"
   },
+  "overrides": {
+    "@vercel/blob": {
+      "undici": "6.27.0"
+    }
+  },
   "files": [
     "assets/",
     "index.js",

package/scripts/skill2recipes.js

@@ -0,0 +1,118 @@
+#!/usr/bin/env node
+'use strict';
+
+// skill2recipes -- CLI: hydrolyze + verify a set of Skills into GEP assets,
+// then compose and publish them as a Recipe to the EvoMap market
+// (https://evomap.ai/market?tab=recipes).
+//
+// Usage:
+//   # From a manifest (recommended -- supports optional/condition per step):
+//   node scripts/skill2recipes.js --manifest ./examples/recipe.manifest.json
+//
+//   # Inline, ordered by argument position:
+//   node scripts/skill2recipes.js --title "Bug Fix Pipeline" \
+//        ./skills/triage ./skills/patch ./skills/verify
+//
+// Options:
+//   --manifest <path>   JSON manifest { title, description, steps:[...] }
+//   --title <str>       Recipe title (>=3 chars; overrides manifest)
+//   --description <str> Recipe description
+//   --price <n>         price_per_execution (Credits, min 1)
+//   --repo-root <path>  Where validation commands run (default: cwd)
+//   --no-publish        Hydrolyze + verify + build asset_ids locally, but do
+//                       not POST anything to the Hub (dry run).
+//   --no-strict         Allow steps whose validation falls back to node --version.
+//
+// Env:
+//   A2A_NODE_ID   (required) registered EvoMap node id -> recipe owner
+//   A2A_HUB_URL   (default https://evomap.ai)
+
+const fs = require('fs');
+const path = require('path');
+
+process.env.A2A_TRANSPORT = 'http';
+if (!process.env.A2A_HUB_URL) process.env.A2A_HUB_URL = 'https://evomap.ai';
+// Keep stdout pure JSON: silence the "[evolver] Using host git repository"
+// banner that paths.js prints on first require. Human-readable status lines go
+// to stderr (console.error) so `... | jq` on stdout always works.
+if (!process.env.EVOLVER_QUIET_PARENT_GIT) process.env.EVOLVER_QUIET_PARENT_GIT = '1';
+
+const skill2recipes = require('../src/gep/skill2recipes');
+
+function parseArgs(argv) {
+  const out = { _: [], publish: true, strict: true };
+  for (let i = 0; i < argv.length; i++) {
+    const a = argv[i];
+    if (a === '--manifest') out.manifest = argv[++i];
+    else if (a === '--title') out.title = argv[++i];
+    else if (a === '--description') out.description = argv[++i];
+    else if (a === '--price') out.pricePerExecution = Number(argv[++i]);
+    else if (a === '--repo-root') out.repoRoot = argv[++i];
+    else if (a === '--no-publish') out.publish = false;
+    else if (a === '--no-strict') out.strict = false;
+    else if (a === '-h' || a === '--help') out.help = true;
+    else if (a.startsWith('--')) { console.error('unknown flag: ' + a); process.exit(2); }
+    else out._.push(a);
+  }
+  return out;
+}
+
+function usage() {
+  console.log([
+    'skill2recipes -- compose published Skills into a GEP Recipe',
+    '',
+    'From a manifest:',
+    '  node scripts/skill2recipes.js --manifest ./examples/recipe.manifest.json',
+    '',
+    'Inline (ordered by position):',
+    '  node scripts/skill2recipes.js --title "Bug Fix Pipeline" ./skills/a ./skills/b',
+    '',
+    'Flags: --title --description --price --repo-root --no-publish --no-strict',
+  ].join('\n'));
+}
+
+async function main() {
+  const args = parseArgs(process.argv.slice(2));
+  if (args.help) { usage(); return; }
+
+  if (!process.env.A2A_NODE_ID && args.publish) {
+    console.error('WARN: A2A_NODE_ID not set -- recipe owner will be derived from a device fingerprint and the Hub may reject it. Register at https://evomap.ai and export A2A_NODE_ID.');
+  }
+
+  let manifest;
+  if (args.manifest) {
+    const p = path.resolve(args.manifest);
+    if (!fs.existsSync(p)) { console.error('manifest not found: ' + p); process.exit(1); }
+    try { manifest = JSON.parse(fs.readFileSync(p, 'utf8')); }
+    catch (e) { console.error('manifest is not valid JSON: ' + e.message); process.exit(1); }
+  } else if (args._.length) {
+    manifest = { steps: args._ };
+  } else {
+    usage();
+    console.error('\nERROR: provide --manifest <path> or one or more skill paths.');
+    process.exit(2);
+  }
+
+  const res = await skill2recipes.composeRecipeFromSkills(manifest, {
+    title: args.title,
+    description: args.description,
+    pricePerExecution: args.pricePerExecution,
+    repoRoot: args.repoRoot,
+    publish: args.publish,
+    strict: args.strict,
+  });
+
+  console.log(JSON.stringify(res, null, 2));
+
+  if (!res.ok) {
+    console.error('\nFAILED: ' + (res.reason || 'unknown') + (res.skill_path ? ' at ' + res.skill_path : ''));
+    process.exit(1);
+  }
+  if (res.recipe_id) {
+    console.error('\nOK recipe ' + res.recipe_id + (args.publish ? ' published -> ' + res.market_url : ' built (dry run, not published)'));
+  } else if (!args.publish) {
+    console.error('\nOK dry run complete (no network calls; ' + (res.steps ? res.steps.length : 0) + ' step(s) built, not published)');
+  }
+}
+
+main().catch((e) => { console.error('ERROR:', e && e.message ? e.message : e); console.error(e); process.exit(1); });

package/src/adapters/claudeCode.js

@@ -1,41 +1,20 @@
 const fs = require('fs');
 const path = require('path');
-const { mergeJsonFile, copyHookScripts, appendSectionToFile, removeHookScripts, removeMarkedSection, assertSafeConfigDir, isEvolverHookCommand } = require('./hookAdapter');
+const { mergeJsonFile, copyHookScripts, appendSectionToFile, removeHookScripts, removeMarkedSection, assertSafeConfigDir, isEvolverHookCommand, buildSafeNodeHookCommand } = require('./hookAdapter');
 
 const HOOK_SCRIPTS_DIR_NAME = 'hooks';
 const EVOLVER_MARKER = '<!-- evolver-evolution-memory -->';
 
-function shellSingleQuote(value) {
-  return `'${String(value).replace(/'/g, "'\\''")}'`;
-}
-
-function quoteEvalScript(script) {
-  if (process.platform === 'win32') {
-    if (script.includes('"')) {
-      throw new Error('unexpected double quote in generated hook wrapper');
-    }
-    return `"${script}"`;
-  }
-  return shellSingleQuote(script);
-}
-
-function buildSafeNodeHookCommand(scriptPath) {
-  const encodedPath = Buffer.from(String(scriptPath), 'utf8').toString('base64');
-  const js = [
-    "const {spawnSync}=require('child_process')",
-    `const p=Buffer.from('${encodedPath}','base64').toString('utf8')`,
-    "const r=spawnSync(process.execPath,[p],{stdio:'inherit',shell:false})",
-    "if(r.error){throw r.error}",
-    'process.exit(r.status == null ? 1 : r.status)',
-  ].join(';');
-  return `node -e ${quoteEvalScript(js)} ${path.basename(scriptPath)}`;
-}
-
 function buildClaudeHooks(evolverRoot, configRoot) {
+  // Resolve hook scripts to an absolute path rooted at the real config dir so
+  // the command works regardless of the cwd Claude Code is launched from
+  // (#590). Falls back to the legacy relative base only when configRoot is
+  // absent (callers should always pass it).
   const scriptsBase = configRoot
-    ? path.join(configRoot, '.claude', 'hooks')
+    ? path.resolve(configRoot, '.claude', 'hooks')
     : path.join('.claude', 'hooks');
-  const hookCommand = (scriptName) => buildSafeNodeHookCommand(path.join(scriptsBase, scriptName));
+  const hookCommand = (scriptName) =>
+    buildSafeNodeHookCommand(path.join(scriptsBase, scriptName));
   return {
     hooks: {
       SessionStart: [
@@ -116,16 +95,6 @@ function install({ configRoot, evolverRoot, force }) {
   const claudeMdPath = path.join(configRoot, 'CLAUDE.md');
   assertSafeConfigDir(claudeDir, '.claude', { subdirs: [HOOK_SCRIPTS_DIR_NAME] });
 
-  if (!force && fs.existsSync(settingsPath)) {
-    try {
-      const existing = JSON.parse(fs.readFileSync(settingsPath, 'utf8'));
-      if (existing._evolver_managed) {
-        console.log('[claude-code] Evolver hooks already installed. Use --force to overwrite.');
-        return { ok: true, skipped: true };
-      }
-    } catch { /* proceed */ }
-  }
-
   fs.mkdirSync(claudeDir, { recursive: true });
 
   const hooksCfg = buildClaudeHooks(evolverRoot, configRoot);

package/src/adapters/hookAdapter.js

@@ -10,6 +10,14 @@ const PLATFORMS = {
   opencode: { name: 'opencode', configDir: '.opencode', detector: '.opencode' },
 };
 
+// Detect the host agent from runtime environment signals, which are far more
+// reliable than scanning for `.claude` / `.cursor` directories when both exist
+// on disk (e.g. under $HOME). Precedence when signals conflict (#590):
+//   1. strong Claude Code signals (set only by the Claude Code runtime)
+//   2. Cursor signals
+//   3. Codex signals
+//   4. CLAUDE_PROJECT_DIR — a weak Claude alias some hosts (incl. Cursor's
+//      Claude integration) export, so it loses to explicit Cursor signals.
 function detectPlatformFromEnv(env = process.env) {
   const hasStrongClaudeSignal = env.CLAUDECODE || env.CLAUDE_CODE_ENTRYPOINT;
   if (hasStrongClaudeSignal) {
@@ -20,10 +28,19 @@ function detectPlatformFromEnv(env = process.env) {
     env.CURSOR_TRACE_ID ||
     env.CURSOR_SESSION_ID ||
     env.CURSOR_PROJECT_DIR ||
+    env.CURSOR_AGENT ||
     String(env.TERM_PROGRAM || '').toLowerCase() === 'cursor';
   if (hasCursorSignal) {
     return 'cursor';
   }
+  const hasCodexSignal =
+    env.CODEX_THREAD_ID ||
+    env.CODEX_SHELL ||
+    env.CODEX_CI ||
+    env.CODEX_INTERNAL_ORIGINATOR_OVERRIDE;
+  if (hasCodexSignal) {
+    return 'codex';
+  }
   if (env.CLAUDE_PROJECT_DIR) {
     return 'claude-code';
   }
@@ -45,6 +62,37 @@ function detectPlatform(cwd) {
   return null;
 }
 
+// Quote `value` as a single shell argument for the host that runs hook
+// `command` strings (POSIX sh, or cmd.exe on Windows).
+function shellQuoteForHost(value) {
+  const raw = String(value);
+  if (process.platform === 'win32') {
+    return `"${raw.replace(/"/g, '\\"')}"`;
+  }
+  return `'${raw.replace(/'/g, "'\\''")}'`;
+}
+
+// Build a hook `command` that runs `scriptPath` with node WITHOUT exposing the
+// path bytes to the shell. The absolute path is base64-encoded into a `node -e`
+// wrapper that decodes it and spawns the real script with `shell:false`, so
+// spaces / `$()` / backticks / `%VAR%` in the path can never be expanded by sh
+// or cmd.exe (#590). The plaintext basename is appended as a final, inert arg
+// so uninstall/reinstall can still match evolver-owned hooks by command
+// substring (see isEvolverHookCommand) even though the path itself is encoded.
+//
+// Shared across adapters so there is exactly one implementation to audit.
+function buildSafeNodeHookCommand(scriptPath) {
+  const encodedPath = Buffer.from(String(scriptPath), 'utf8').toString('base64');
+  const js = [
+    "const{spawnSync}=require('child_process')",
+    `const p=Buffer.from('${encodedPath}','base64').toString('utf8')`,
+    "const r=spawnSync(process.execPath,[p],{stdio:'inherit',shell:false})",
+    "if(r.error){console.error(r.error.message||String(r.error));process.exit(1)}",
+    "process.exit(r.status==null?1:r.status)",
+  ].join(';');
+  return `node -e ${shellQuoteForHost(js)} ${path.basename(scriptPath)}`;
+}
+
 function resolveConfigRoot(platformId, cwd) {
   const root = cwd || process.cwd();
   const home = os.homedir();
@@ -97,11 +145,9 @@ function mergeWithHooksUnion(target, source) {
       const tArr = Array.isArray(target.hooks[event]) ? target.hooks[event] : null;
       const sArr = Array.isArray(source.hooks[event]) ? source.hooks[event] : null;
       if (tArr && sArr) {
-        const isEvolverOwned = (entry) => {
-          const cmds = collectCommands(entry);
-          return cmds.some(isEvolverHookCommand);
-        };
-        const userEntries = tArr.filter(e => !isEvolverOwned(e));
+        const userEntries = tArr
+          .map(stripEvolverCommands)
+          .filter(Boolean);
         result.hooks[event] = [...userEntries, ...sArr];
       }
     }
@@ -109,6 +155,22 @@ function mergeWithHooksUnion(target, source) {
   return result;
 }
 
+function stripEvolverCommands(entry) {
+  if (!entry || typeof entry !== 'object') return entry;
+  if (typeof entry.command === 'string' && isEvolverHookCommand(entry.command)) {
+    return null;
+  }
+  if (!Array.isArray(entry.hooks)) return entry;
+
+  const hooks = entry.hooks.filter(h => {
+    const cmd = h && h.command;
+    return !(typeof cmd === 'string' && isEvolverHookCommand(cmd));
+  });
+  if (hooks.length === 0) return null;
+  if (hooks.length === entry.hooks.length) return entry;
+  return { ...entry, hooks };
+}
+
 // Pull all `command` strings out of an event entry, supporting both flat
 // shape (Codex: `{type, command}`) and Claude Code matcher shape
 // (`{matcher, hooks: [{type, command}]}`). Returns [] when neither applies.
@@ -387,6 +449,7 @@ async function setupHooks({ platform, cwd, force, uninstall, evolverRoot } = {})
 module.exports = {
   detectPlatformFromEnv,
   detectPlatform,
+  buildSafeNodeHookCommand,
   resolveConfigRoot,
   loadAdapter,
   mergeJsonFile,

package/src/adapters/scripts/evolver-session-start.js

@@ -373,6 +373,58 @@ function getNoticeStatePath() {
   return path.join(dir, 'session-start-notice-state.json');
 }
 
+// Resolve the evolver-marked-sessions registry path. This is the v1 "evolver
+// actively marked this session" ledger: only sessions whose session-start hook
+// actually fired (i.e. sessions evolver participated in, after hook install)
+// land here. The trajectory exporter reads it to gate which runtime-session
+// transcripts get collected (strict by default). Lives alongside the proxy
+// trace dir so both collection ledgers share one home. The env override keeps
+// tests hermetic and lets an operator relocate the ledger.
+function getMarkedSessionsPath() {
+  if (process.env.EVOLVER_MARKED_SESSIONS_FILE) return process.env.EVOLVER_MARKED_SESSIONS_FILE;
+  const dir = process.env.EVOLVER_SETTINGS_DIR
+    || process.env.EVOLVER_SESSION_STATE_DIR
+    || path.join(os.homedir(), '.evolver');
+  return path.join(dir, 'marked-sessions.jsonl');
+}
+
+// Pull the tool's session_id out of the hook's stdin payload. Claude Code,
+// Codex, and Cursor all pass `session_id` (Claude Code / Cursor) on the
+// SessionStart stdin JSON; some shapes use `sessionId`. Returns '' when absent
+// so callers can skip the registry write without erroring (Kiro's promptSubmit
+// and hosts that pass no stdin simply don't mark — fail-open by design).
+function _extractHookSessionId(input) {
+  if (!input || typeof input !== 'object') return '';
+  const raw = input.session_id ?? input.sessionId ?? input.sessionID;
+  return typeof raw === 'string' ? raw.trim() : '';
+}
+
+// Append one mark record to the registry. Best-effort and idempotent enough for
+// the exporter's needs: the exporter dedupes into a Set, so a session marked on
+// every prompt (Kiro) just appends duplicate lines that collapse on read. We do
+// NOT read-modify-write to dedupe here — that would race across concurrent
+// sessions; append-only is safe and the file is bounded by session count.
+function recordMarkedSession(sessionId, info = {}) {
+  const sid = String(sessionId || '').trim();
+  if (!sid) return false;
+  const file = getMarkedSessionsPath();
+  try {
+    fs.mkdirSync(path.dirname(file), { recursive: true });
+    const record = {
+      session_id: sid,
+      ...(info.cwd ? { cwd: String(info.cwd) } : {}),
+      ...(info.source ? { source: String(info.source) } : {}),
+      marked_at: new Date().toISOString(),
+    };
+    fs.appendFileSync(file, JSON.stringify(record) + '\n', { encoding: 'utf8', mode: 0o600 });
+    return true;
+  } catch (_) {
+    // Never let a registry write failure break session-start: the context
+    // injection (stdout JSON) must always be emitted.
+    return false;
+  }
+}
+
 // TTL throttle keyed by an arbitrary string. Returns true if `key` fired within
 // the last `ttlMs` (caller should suppress); otherwise records "now" for `key`
 // and returns false. Best-effort: a state read/write failure just means no
@@ -415,7 +467,50 @@ function shouldSkipInjection() {
   return throttled(process.cwd(), ttlMs, getDedupStatePath());
 }
 
+// Drain the hook stdin (session context JSON) before running, so we can read the
+// tool's session_id and mark the session in the registry. The host passes the
+// SessionStart payload on stdin; we bound the wait with a short watchdog and
+// fail-open (mark nothing, still emit context) if stdin never closes or isn't a
+// pipe. This mirrors the stdin-draining pattern in evolver-task-recall.js /
+// evolver-session-end.js.
 function main() {
+  let done = false;
+  let buf = '';
+  const finishWithInput = (input) => {
+    if (done) return;
+    done = true;
+    try {
+      const sessionId = _extractHookSessionId(input);
+      if (sessionId) {
+        recordMarkedSession(sessionId, {
+          cwd: resolveProjectDir(),
+          source: String(process.env.EVOLVER_SESSION_SOURCE || (input && input.source) || '').trim() || undefined,
+        });
+      }
+    } catch (_) { /* marking is best-effort; never block injection */ }
+    runInjection();
+  };
+
+  // Watchdog: if stdin never ends (host passed no pipe, or hangs), proceed
+  // without a session_id rather than stalling the agent's session start.
+  const watchdog = setTimeout(() => finishWithInput(null), 1500);
+  try {
+    process.stdin.setEncoding('utf8');
+  } catch (_) { /* some hosts pass no stdin */ }
+  process.stdin.on('data', (c) => { buf += c; });
+  process.stdin.on('error', () => { clearTimeout(watchdog); finishWithInput(null); });
+  process.stdin.on('end', () => {
+    clearTimeout(watchdog);
+    let input = null;
+    try { input = buf.trim() ? JSON.parse(buf) : null; } catch (_) { input = null; }
+    finishWithInput(input);
+  });
+  // Nudge a resume so a paused stdin stream flushes its data/end events; the
+  // watchdog covers the case where neither ever arrives (no pipe attached).
+  try { process.stdin.resume(); } catch (_) { /* ignore */ }
+}
+
+function runInjection() {
   if (shouldSkipInjection()) {
     process.stdout.write(JSON.stringify({}));
     return;
@@ -485,5 +580,8 @@ if (require.main === module) {
     _proxyExpected,
     _proxyReachable,
     _proxyHealthyIfExpected,
+    _extractHookSessionId,
+    getMarkedSessionsPath,
+    recordMarkedSession,
   };
 }