@erosolaraijs/cure 2.0.0 → 2.2.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bin/cure.js +1 -1
- package/dist/capabilities/cancerTreatmentCapability.d.ts.map +1 -1
- package/dist/capabilities/cancerTreatmentCapability.js +635 -2
- package/dist/capabilities/cancerTreatmentCapability.js.map +1 -1
- package/package.json +1 -1
- package/src/bin/cure.ts +1 -1
- package/src/capabilities/cancerTreatmentCapability.ts +658 -2
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@@ -631,7 +631,523 @@ export class CancerTreatmentCapabilityModule {
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cancerTypes: ['Pancreatic', 'Glioblastoma', 'NSCLC', 'Mesothelioma'],
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approvedDrugs: ['MAT2A inhibitors (investigational)', 'PRMT5 inhibitors (investigational)'],
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mechanismOfAction: 'Synthetic lethality in MTAP-deleted tumors',
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evidenceLevel: 'Phase II', biomarker: 'MTAP deletion (co-deleted with CDKN2A)' }
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evidenceLevel: 'Phase II', biomarker: 'MTAP deletion (co-deleted with CDKN2A)' },
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// === ALL KRAS VARIANTS ===
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{ gene: 'KRAS G12D', protein: 'KRAS G12D Mutant', pathway: 'RAS/MAPK',
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cancerTypes: ['Pancreatic', 'Colorectal', 'NSCLC', 'Endometrial'],
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approvedDrugs: ['MRTX1133 (investigational)', 'RMC-9805 (investigational)'],
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mechanismOfAction: 'Direct KRAS G12D inhibition',
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evidenceLevel: 'Phase I', biomarker: 'KRAS G12D mutation' },
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{ gene: 'KRAS G12V', protein: 'KRAS G12V Mutant', pathway: 'RAS/MAPK',
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cancerTypes: ['Pancreatic', 'Colorectal', 'NSCLC'],
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approvedDrugs: ['Pan-RAS inhibitors (investigational)', 'SOS1 inhibitors'],
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mechanismOfAction: 'Indirect KRAS inhibition strategies',
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evidenceLevel: 'Phase I', biomarker: 'KRAS G12V mutation' },
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{ gene: 'KRAS G13D', protein: 'KRAS G13D Mutant', pathway: 'RAS/MAPK',
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cancerTypes: ['Colorectal', 'NSCLC'],
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649
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approvedDrugs: ['Cetuximab (may respond)', 'SHP2 inhibitors'],
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650
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mechanismOfAction: 'EGFR antibodies may work in G13D',
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evidenceLevel: 'Phase II', biomarker: 'KRAS G13D mutation' },
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{ gene: 'KRAS G12R', protein: 'KRAS G12R Mutant', pathway: 'RAS/MAPK',
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cancerTypes: ['Pancreatic'],
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approvedDrugs: ['Pan-RAS inhibitors (investigational)'],
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mechanismOfAction: 'Novel RAS inhibition approaches',
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evidenceLevel: 'Phase I', biomarker: 'KRAS G12R mutation' },
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657
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{ gene: 'KRAS Q61H/L/K', protein: 'KRAS Q61 Mutants', pathway: 'RAS/MAPK',
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658
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cancerTypes: ['Melanoma', 'NSCLC', 'Colorectal'],
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659
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approvedDrugs: ['MEK inhibitors', 'ERK inhibitors (investigational)'],
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660
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mechanismOfAction: 'Downstream pathway inhibition',
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evidenceLevel: 'Phase II', biomarker: 'KRAS Q61 mutations' },
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662
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{ gene: 'NRAS Q61', protein: 'NRAS Q61 Mutant', pathway: 'RAS/MAPK',
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663
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cancerTypes: ['Melanoma', 'AML', 'Colorectal'],
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approvedDrugs: ['Binimetinib', 'MEK inhibitors'],
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mechanismOfAction: 'MEK inhibition for NRAS-mutant tumors',
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evidenceLevel: 'FDA-Approved', biomarker: 'NRAS mutation' },
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{ gene: 'HRAS', protein: 'HRAS Mutant', pathway: 'RAS/MAPK',
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cancerTypes: ['Head and Neck', 'Bladder', 'Thyroid'],
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approvedDrugs: ['Tipifarnib'],
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mechanismOfAction: 'Farnesyltransferase inhibition',
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evidenceLevel: 'FDA-Approved', biomarker: 'HRAS mutation' },
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// === HEREDITARY CANCER SYNDROME TARGETS ===
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{ gene: 'MLH1/MSH2/MSH6/PMS2', protein: 'Mismatch Repair Proteins', pathway: 'DNA Repair',
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cancerTypes: ['Lynch Syndrome Cancers', 'Colorectal', 'Endometrial', 'Ovarian', 'Gastric'],
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approvedDrugs: ['Pembrolizumab', 'Nivolumab', 'Dostarlimab'],
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mechanismOfAction: 'Immunotherapy for dMMR tumors',
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evidenceLevel: 'FDA-Approved', biomarker: 'dMMR/MSI-H (Lynch syndrome)' },
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679
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{ gene: 'TP53 (Li-Fraumeni)', protein: 'p53 Tumor Suppressor', pathway: 'Cell Cycle/Apoptosis',
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cancerTypes: ['Li-Fraumeni Syndrome', 'Sarcoma', 'Breast', 'Brain', 'Adrenocortical'],
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approvedDrugs: ['Intensive surveillance', 'MDM2 inhibitors (investigational)', 'Gene therapy (investigational)'],
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mechanismOfAction: 'Restore p53 function or surveillance',
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evidenceLevel: 'Phase II', biomarker: 'Germline TP53 mutation' },
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{ gene: 'APC', protein: 'Adenomatous Polyposis Coli', pathway: 'Wnt/β-catenin',
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cancerTypes: ['FAP Colorectal', 'Desmoid Tumor'],
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approvedDrugs: ['Sulindac', 'Celecoxib', 'Nirogacestat (desmoid)'],
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mechanismOfAction: 'COX inhibition, Notch inhibition',
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evidenceLevel: 'FDA-Approved', biomarker: 'APC mutation (FAP)' },
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{ gene: 'STK11/LKB1', protein: 'Serine/Threonine Kinase 11', pathway: 'AMPK/mTOR',
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cancerTypes: ['Peutz-Jeghers Syndrome', 'NSCLC', 'Cervical'],
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approvedDrugs: ['mTOR inhibitors', 'Chemotherapy (reduced ICI response)'],
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mechanismOfAction: 'Target downstream pathways',
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evidenceLevel: 'Phase II', biomarker: 'STK11/LKB1 loss' },
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{ gene: 'PTEN (Cowden)', protein: 'PTEN Tumor Suppressor', pathway: 'PI3K/AKT',
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cancerTypes: ['Cowden Syndrome', 'Breast', 'Thyroid', 'Endometrial'],
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approvedDrugs: ['PI3K inhibitors', 'AKT inhibitors', 'mTOR inhibitors'],
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mechanismOfAction: 'Inhibit hyperactive PI3K pathway',
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evidenceLevel: 'FDA-Approved', biomarker: 'PTEN loss (Cowden syndrome)' },
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{ gene: 'CDH1', protein: 'E-cadherin', pathway: 'Cell Adhesion',
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cancerTypes: ['Hereditary Diffuse Gastric Cancer', 'Lobular Breast'],
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approvedDrugs: ['Prophylactic gastrectomy', 'Surveillance', 'Standard chemo'],
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mechanismOfAction: 'Surgical prevention or standard treatment',
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evidenceLevel: 'FDA-Approved', biomarker: 'CDH1 germline mutation' },
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{ gene: 'CHEK2', protein: 'Checkpoint Kinase 2', pathway: 'DNA Damage Response',
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cancerTypes: ['Breast', 'Colorectal', 'Prostate'],
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approvedDrugs: ['PARP inhibitors (investigational)', 'ATR inhibitors'],
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mechanismOfAction: 'Exploit DNA repair deficiency',
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evidenceLevel: 'Phase II', biomarker: 'CHEK2 mutation' },
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{ gene: 'PALB2', protein: 'Partner and Localizer of BRCA2', pathway: 'Homologous Recombination',
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cancerTypes: ['Breast', 'Pancreatic', 'Ovarian'],
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approvedDrugs: ['Olaparib', 'Rucaparib', 'Platinum chemotherapy'],
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mechanismOfAction: 'PARP inhibition for HRD',
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evidenceLevel: 'FDA-Approved', biomarker: 'PALB2 mutation' },
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{ gene: 'RAD51C/D', protein: 'RAD51 Paralogs', pathway: 'Homologous Recombination',
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cancerTypes: ['Ovarian', 'Breast'],
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approvedDrugs: ['PARP inhibitors', 'Platinum'],
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mechanismOfAction: 'Synthetic lethality in HRD',
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evidenceLevel: 'FDA-Approved', biomarker: 'RAD51C/D mutation' },
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{ gene: 'BAP1', protein: 'BRCA1-Associated Protein 1', pathway: 'Chromatin/DNA Repair',
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cancerTypes: ['Mesothelioma', 'Uveal Melanoma', 'RCC', 'Cholangiocarcinoma'],
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approvedDrugs: ['EZH2 inhibitors (investigational)', 'PARP inhibitors', 'Immunotherapy'],
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mechanismOfAction: 'Exploit epigenetic vulnerability',
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evidenceLevel: 'Phase II', biomarker: 'BAP1 loss/mutation' },
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{ gene: 'MEN1', protein: 'Menin', pathway: 'Transcription Regulation',
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cancerTypes: ['MEN1 Syndrome', 'Pancreatic NET', 'Pituitary', 'Parathyroid'],
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approvedDrugs: ['Somatostatin analogues', 'Everolimus', 'Sunitinib'],
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mechanismOfAction: 'Manage neuroendocrine tumors',
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evidenceLevel: 'FDA-Approved', biomarker: 'MEN1 germline mutation' },
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{ gene: 'RB1', protein: 'Retinoblastoma Protein', pathway: 'Cell Cycle',
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cancerTypes: ['Retinoblastoma', 'Osteosarcoma', 'SCLC'],
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approvedDrugs: ['CDK4/6 inhibitors (if RB intact)', 'Chemotherapy', 'Focal therapy'],
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mechanismOfAction: 'Target cell cycle or standard therapy',
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evidenceLevel: 'FDA-Approved', biomarker: 'RB1 mutation/loss' },
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// === HIV/IMMUNOCOMPROMISED CANCER TARGETS ===
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{ gene: 'HHV8/KSHV', protein: 'Kaposi Sarcoma Herpesvirus', pathway: 'Viral Oncogenesis',
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cancerTypes: ['Kaposi Sarcoma', 'Primary Effusion Lymphoma', 'Multicentric Castleman'],
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approvedDrugs: ['ART', 'Liposomal Doxorubicin', 'Paclitaxel', 'Pomalidomide', 'Siltuximab'],
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mechanismOfAction: 'Immune reconstitution + direct therapy',
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evidenceLevel: 'FDA-Approved', biomarker: 'HHV8+ malignancy' },
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{ gene: 'EBV', protein: 'Epstein-Barr Virus', pathway: 'Viral Oncogenesis',
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cancerTypes: ['PTLD', 'Nasopharyngeal', 'Burkitt Lymphoma', 'Hodgkin', 'Gastric'],
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approvedDrugs: ['Rituximab (PTLD)', 'EBV-specific CTLs', 'Tabelecleucel', 'Chemotherapy'],
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mechanismOfAction: 'Target EBV+ cells or reduce immunosuppression',
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evidenceLevel: 'FDA-Approved', biomarker: 'EBV+ malignancy' },
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{ gene: 'HPV', protein: 'Human Papillomavirus', pathway: 'Viral Oncogenesis',
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cancerTypes: ['Cervical', 'OPSCC', 'Anal', 'Vulvar', 'Vaginal', 'Penile'],
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approvedDrugs: ['Tisotumab Vedotin', 'Pembrolizumab', 'Chemoradiation'],
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mechanismOfAction: 'Target HPV-driven cancers',
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evidenceLevel: 'FDA-Approved', biomarker: 'HPV+ cancer' },
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{ gene: 'HBV/HCV', protein: 'Hepatitis B/C Viruses', pathway: 'Viral Oncogenesis',
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cancerTypes: ['HCC'],
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approvedDrugs: ['Antiviral therapy', 'Atezolizumab-Bevacizumab', 'Sorafenib', 'Lenvatinib'],
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mechanismOfAction: 'Viral suppression + HCC treatment',
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evidenceLevel: 'FDA-Approved', biomarker: 'HBV/HCV-related HCC' },
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// === CNS-PENETRANT THERAPY TARGETS ===
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{ gene: 'CNS-EGFR', protein: 'CNS-Penetrant EGFR Inhibition', pathway: 'EGFR',
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cancerTypes: ['NSCLC Brain Mets', 'EGFR+ with LMD'],
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approvedDrugs: ['Osimertinib (CNS-penetrant)', 'High-dose Gefitinib'],
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mechanismOfAction: 'Cross blood-brain barrier',
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evidenceLevel: 'FDA-Approved', biomarker: 'EGFR+ NSCLC with CNS disease' },
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{ gene: 'CNS-ALK', protein: 'CNS-Penetrant ALK Inhibition', pathway: 'ALK',
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cancerTypes: ['ALK+ NSCLC Brain Mets'],
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approvedDrugs: ['Lorlatinib', 'Alectinib', 'Brigatinib'],
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mechanismOfAction: 'High CNS penetration',
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evidenceLevel: 'FDA-Approved', biomarker: 'ALK+ NSCLC with CNS disease' },
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{ gene: 'CNS-HER2', protein: 'CNS-Penetrant HER2 Therapy', pathway: 'HER2',
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cancerTypes: ['HER2+ Breast Brain Mets'],
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approvedDrugs: ['Tucatinib + Trastuzumab', 'T-DXd', 'Lapatinib'],
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mechanismOfAction: 'CNS-penetrant HER2 inhibition',
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evidenceLevel: 'FDA-Approved', biomarker: 'HER2+ breast with CNS disease' },
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{ gene: 'CNS-Melanoma', protein: 'CNS-Active Melanoma Therapy', pathway: 'Multiple',
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cancerTypes: ['Melanoma Brain Mets'],
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approvedDrugs: ['Nivolumab + Ipilimumab', 'BRAF/MEK (if BRAF+)', 'SRS'],
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mechanismOfAction: 'Immunotherapy reaches CNS',
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evidenceLevel: 'FDA-Approved', biomarker: 'Melanoma with CNS disease' },
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// === RESISTANCE MECHANISM TARGETS ===
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{ gene: 'EGFR C797S', protein: 'EGFR C797S Resistance', pathway: 'EGFR',
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cancerTypes: ['NSCLC post-Osimertinib'],
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approvedDrugs: ['Amivantamab', 'Chemotherapy', 'EGFR-MET bispecifics', '4th-gen TKIs (investigational)'],
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mechanismOfAction: 'Overcome covalent TKI resistance',
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evidenceLevel: 'FDA-Approved', biomarker: 'EGFR C797S after osimertinib' },
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{ gene: 'ALK Resistance', protein: 'ALK Compound Mutations', pathway: 'ALK',
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cancerTypes: ['ALK+ NSCLC resistant'],
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approvedDrugs: ['Lorlatinib', 'Sequential ALK TKIs based on mutation'],
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mechanismOfAction: 'Select TKI by resistance profile',
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evidenceLevel: 'FDA-Approved', biomarker: 'ALK resistance mutations' },
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{ gene: 'ESR1 Mutations', protein: 'Estrogen Receptor Mutations', pathway: 'Hormone',
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cancerTypes: ['HR+ Breast post-AI'],
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approvedDrugs: ['Elacestrant', 'Fulvestrant', 'Novel SERDs'],
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mechanismOfAction: 'SERD for ESR1-mutant breast cancer',
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evidenceLevel: 'FDA-Approved', biomarker: 'ESR1 mutation' },
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{ gene: 'AR Splice Variants', protein: 'AR-V7', pathway: 'Hormone',
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cancerTypes: ['mCRPC'],
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approvedDrugs: ['Taxanes preferred', 'PSMA radioligand', 'Consider avoiding AR-targeted'],
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mechanismOfAction: 'AR-V7+ predicts AR therapy resistance',
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evidenceLevel: 'FDA-Approved', biomarker: 'AR-V7 positive' },
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{ gene: 'BTK C481S', protein: 'BTK Covalent Resistance', pathway: 'BCR Signaling',
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cancerTypes: ['CLL/MCL post-Ibrutinib'],
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approvedDrugs: ['Pirtobrutinib', 'Venetoclax', 'Non-covalent BTK inhibitors'],
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mechanismOfAction: 'Non-covalent BTK inhibition',
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evidenceLevel: 'FDA-Approved', biomarker: 'BTK C481S mutation' },
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805
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{ gene: 'BCR-ABL T315I', protein: 'BCR-ABL Gatekeeper Mutation', pathway: 'BCR-ABL',
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806
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cancerTypes: ['CML', 'Ph+ ALL'],
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807
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approvedDrugs: ['Ponatinib', 'Asciminib'],
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808
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mechanismOfAction: 'Overcome T315I resistance',
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809
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evidenceLevel: 'FDA-Approved', biomarker: 'BCR-ABL T315I' },
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810
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{ gene: 'MET Amplification', protein: 'MET Bypass Resistance', pathway: 'MET',
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cancerTypes: ['EGFR+ NSCLC resistant'],
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812
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approvedDrugs: ['Amivantamab + Lazertinib', 'Capmatinib + Osimertinib', 'Tepotinib'],
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813
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mechanismOfAction: 'Dual EGFR/MET inhibition',
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814
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evidenceLevel: 'FDA-Approved', biomarker: 'MET amplification as resistance' },
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816
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// === OLIGOMETASTATIC DISEASE TARGETS ===
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{ gene: 'Oligomet', protein: 'Oligometastatic Disease', pathway: 'Multiple',
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cancerTypes: ['NSCLC Oligomet', 'Colorectal Liver Mets', 'Prostate Oligomet'],
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approvedDrugs: ['SBRT', 'Metastasectomy', 'Local ablation', 'Continued systemic'],
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mechanismOfAction: 'Consolidative local therapy',
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evidenceLevel: 'FDA-Approved', biomarker: 'Limited metastatic burden (1-5 mets)' },
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// === THERAPY-RELATED MALIGNANCY TARGETS ===
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{ gene: 't-MN', protein: 'Therapy-Related Myeloid Neoplasm', pathway: 'Multiple',
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cancerTypes: ['t-AML', 't-MDS'],
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approvedDrugs: ['CPX-351 (favorable)', 'Venetoclax-HMA', 'Allogeneic transplant'],
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mechanismOfAction: 'Intensive therapy if fit, otherwise HMA-based',
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evidenceLevel: 'FDA-Approved', biomarker: 'Prior chemo/radiation exposure' },
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// === SPECIAL POPULATIONS ===
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{ gene: 'Organ Transplant', protein: 'Post-Transplant Malignancy', pathway: 'Multiple',
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832
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cancerTypes: ['PTLD', 'Skin Cancer', 'Kaposi', 'Any post-transplant'],
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approvedDrugs: ['Reduce immunosuppression', 'Rituximab (PTLD)', 'mTOR-based IS'],
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mechanismOfAction: 'Balance rejection risk vs cancer treatment',
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evidenceLevel: 'FDA-Approved', biomarker: 'Solid organ transplant recipient' },
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{ gene: 'Autoimmune', protein: 'Cancer with Autoimmune Disease', pathway: 'Immune',
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cancerTypes: ['Any cancer with autoimmune comorbidity'],
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approvedDrugs: ['Checkpoint inhibitors with caution', 'Targeted therapy preferred', 'Close monitoring'],
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mechanismOfAction: 'Risk-benefit assessment for immunotherapy',
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evidenceLevel: 'FDA-Approved', biomarker: 'Pre-existing autoimmune disease' },
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// === LIQUID BIOPSY AND ctDNA MONITORING ===
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{ gene: 'ctDNA', protein: 'Circulating Tumor DNA', pathway: 'Monitoring',
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cancerTypes: ['All Solid Tumors'],
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approvedDrugs: ['Guardant360', 'FoundationOne Liquid CDx', 'Signatera'],
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mechanismOfAction: 'Non-invasive tumor genotyping and monitoring',
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evidenceLevel: 'FDA-Approved', biomarker: 'ctDNA for treatment selection and MRD' },
|
|
848
|
+
{ gene: 'CTC', protein: 'Circulating Tumor Cells', pathway: 'Monitoring',
|
|
849
|
+
cancerTypes: ['Breast', 'Prostate', 'Colorectal'],
|
|
850
|
+
approvedDrugs: ['CellSearch'],
|
|
851
|
+
mechanismOfAction: 'Enumerate CTCs for prognosis',
|
|
852
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'CTC count ≥5 (breast/prostate)' },
|
|
853
|
+
{ gene: 'MRD-Heme', protein: 'Minimal Residual Disease (Hematologic)', pathway: 'Monitoring',
|
|
854
|
+
cancerTypes: ['ALL', 'AML', 'CLL', 'Multiple Myeloma', 'Lymphoma'],
|
|
855
|
+
approvedDrugs: ['Flow cytometry', 'NGS-MRD', 'clonoSEQ'],
|
|
856
|
+
mechanismOfAction: 'Detect residual disease at 10^-6 sensitivity',
|
|
857
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'MRD negativity predicts outcomes' },
|
|
858
|
+
{ gene: 'MRD-Solid', protein: 'Molecular Residual Disease (Solid)', pathway: 'Monitoring',
|
|
859
|
+
cancerTypes: ['Colorectal', 'Breast', 'NSCLC', 'Bladder'],
|
|
860
|
+
approvedDrugs: ['Signatera', 'Guardant Reveal'],
|
|
861
|
+
mechanismOfAction: 'ctDNA-based MRD detection post-surgery',
|
|
862
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'ctDNA MRD guides adjuvant therapy' },
|
|
863
|
+
|
|
864
|
+
// === FERTILITY PRESERVATION ===
|
|
865
|
+
{ gene: 'Fertility-Female', protein: 'Female Fertility Preservation', pathway: 'Supportive',
|
|
866
|
+
cancerTypes: ['Any in reproductive-age female'],
|
|
867
|
+
approvedDrugs: ['Oocyte cryopreservation', 'Embryo cryopreservation', 'Ovarian tissue cryopreservation', 'GnRH agonist ovarian suppression'],
|
|
868
|
+
mechanismOfAction: 'Preserve reproductive potential before gonadotoxic therapy',
|
|
869
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Pre-menopausal, desires future fertility' },
|
|
870
|
+
{ gene: 'Fertility-Male', protein: 'Male Fertility Preservation', pathway: 'Supportive',
|
|
871
|
+
cancerTypes: ['Any in reproductive-age male'],
|
|
872
|
+
approvedDrugs: ['Sperm cryopreservation', 'Testicular tissue cryopreservation (pediatric)', 'Testicular sperm extraction'],
|
|
873
|
+
mechanismOfAction: 'Bank sperm before gonadotoxic therapy',
|
|
874
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Post-pubertal male, desires future fertility' },
|
|
875
|
+
{ gene: 'Gonadotoxicity', protein: 'Gonadotoxicity Assessment', pathway: 'Supportive',
|
|
876
|
+
cancerTypes: ['Any receiving gonadotoxic therapy'],
|
|
877
|
+
approvedDrugs: ['AMH testing', 'FSH/LH monitoring', 'Semen analysis'],
|
|
878
|
+
mechanismOfAction: 'Assess fertility status before/after treatment',
|
|
879
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Alkylating agents, pelvic radiation' },
|
|
880
|
+
|
|
881
|
+
// === INTEGRATIVE ONCOLOGY ===
|
|
882
|
+
{ gene: 'Integrative', protein: 'Integrative Oncology Approaches', pathway: 'Supportive',
|
|
883
|
+
cancerTypes: ['Any'],
|
|
884
|
+
approvedDrugs: ['Acupuncture (CINV, pain)', 'Meditation/mindfulness', 'Yoga', 'Massage therapy', 'Music therapy'],
|
|
885
|
+
mechanismOfAction: 'Evidence-based complementary approaches',
|
|
886
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Patient preference, symptom management' },
|
|
887
|
+
{ gene: 'Cannabis', protein: 'Medical Cannabis', pathway: 'Supportive',
|
|
888
|
+
cancerTypes: ['Any with symptoms'],
|
|
889
|
+
approvedDrugs: ['Dronabinol', 'Nabilone', 'CBD/THC products (where legal)'],
|
|
890
|
+
mechanismOfAction: 'Appetite stimulation, nausea, pain',
|
|
891
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Refractory symptoms' },
|
|
892
|
+
{ gene: 'Exercise-Onc', protein: 'Exercise Oncology', pathway: 'Supportive',
|
|
893
|
+
cancerTypes: ['Any'],
|
|
894
|
+
approvedDrugs: ['Aerobic exercise prescription', 'Resistance training', 'Prehabilitation', 'Cancer rehabilitation'],
|
|
895
|
+
mechanismOfAction: 'Improve outcomes, reduce fatigue, enhance QoL',
|
|
896
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'All patients who can exercise' },
|
|
897
|
+
|
|
898
|
+
// === ADVANCED RADIATION TECHNIQUES ===
|
|
899
|
+
{ gene: 'SBRT', protein: 'Stereotactic Body Radiotherapy', pathway: 'Radiation',
|
|
900
|
+
cancerTypes: ['NSCLC (early)', 'Liver mets', 'Spine mets', 'Oligometastatic'],
|
|
901
|
+
approvedDrugs: ['SBRT 3-5 fractions', 'High BED delivery'],
|
|
902
|
+
mechanismOfAction: 'Ablative doses with steep dose gradients',
|
|
903
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Limited metastatic burden, good PS' },
|
|
904
|
+
{ gene: 'SRS', protein: 'Stereotactic Radiosurgery', pathway: 'Radiation',
|
|
905
|
+
cancerTypes: ['Brain metastases', 'Meningioma', 'Acoustic neuroma'],
|
|
906
|
+
approvedDrugs: ['Single fraction SRS', 'Fractionated SRS', 'Gamma Knife', 'CyberKnife'],
|
|
907
|
+
mechanismOfAction: 'Precise high-dose brain radiation',
|
|
908
|
+
evidenceLevel: 'FDA-Approved', biomarker: '1-10 brain metastases' },
|
|
909
|
+
{ gene: 'Proton', protein: 'Proton Beam Therapy', pathway: 'Radiation',
|
|
910
|
+
cancerTypes: ['Pediatric tumors', 'Skull base', 'Spine', 'Prostate', 'Ocular melanoma'],
|
|
911
|
+
approvedDrugs: ['Proton therapy', 'Pencil beam scanning'],
|
|
912
|
+
mechanismOfAction: 'Bragg peak spares distal tissues',
|
|
913
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Pediatric, re-irradiation, critical structure proximity' },
|
|
914
|
+
{ gene: 'Brachytherapy', protein: 'Brachytherapy', pathway: 'Radiation',
|
|
915
|
+
cancerTypes: ['Prostate', 'Cervical', 'Breast', 'Skin'],
|
|
916
|
+
approvedDrugs: ['LDR seeds', 'HDR brachytherapy', 'Intracavitary', 'Interstitial'],
|
|
917
|
+
mechanismOfAction: 'Internal radiation source placement',
|
|
918
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Localized disease amenable to implant' },
|
|
919
|
+
{ gene: 'FLASH-RT', protein: 'FLASH Radiotherapy', pathway: 'Radiation',
|
|
920
|
+
cancerTypes: ['Investigational for all'],
|
|
921
|
+
approvedDrugs: ['Ultra-high dose rate RT (investigational)'],
|
|
922
|
+
mechanismOfAction: 'Spares normal tissue at ultra-high dose rates',
|
|
923
|
+
evidenceLevel: 'Phase I', biomarker: 'Emerging technology' },
|
|
924
|
+
|
|
925
|
+
// === INTERVENTIONAL ONCOLOGY ===
|
|
926
|
+
{ gene: 'RFA', protein: 'Radiofrequency Ablation', pathway: 'Interventional',
|
|
927
|
+
cancerTypes: ['HCC', 'Colorectal liver mets', 'RCC', 'Lung nodules'],
|
|
928
|
+
approvedDrugs: ['RFA probe', 'CT/US guidance'],
|
|
929
|
+
mechanismOfAction: 'Thermal ablation of tumors',
|
|
930
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Tumor ≤3cm, not near critical structures' },
|
|
931
|
+
{ gene: 'MWA', protein: 'Microwave Ablation', pathway: 'Interventional',
|
|
932
|
+
cancerTypes: ['HCC', 'Liver mets', 'Lung', 'Kidney'],
|
|
933
|
+
approvedDrugs: ['MWA antenna', 'CT guidance'],
|
|
934
|
+
mechanismOfAction: 'Microwave-induced coagulative necrosis',
|
|
935
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Larger tumors than RFA' },
|
|
936
|
+
{ gene: 'Cryoablation', protein: 'Cryoablation', pathway: 'Interventional',
|
|
937
|
+
cancerTypes: ['RCC', 'Prostate', 'Breast', 'Bone mets'],
|
|
938
|
+
approvedDrugs: ['Argon-helium cryoprobe'],
|
|
939
|
+
mechanismOfAction: 'Freeze-thaw cycles cause cell death',
|
|
940
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Small renal masses, bone metastases' },
|
|
941
|
+
{ gene: 'TACE', protein: 'Transarterial Chemoembolization', pathway: 'Interventional',
|
|
942
|
+
cancerTypes: ['HCC', 'Liver metastases', 'NET liver mets'],
|
|
943
|
+
approvedDrugs: ['Drug-eluting beads', 'Lipiodol + chemo'],
|
|
944
|
+
mechanismOfAction: 'Intra-arterial chemo + embolization',
|
|
945
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Unresectable HCC, Child-Pugh A/B' },
|
|
946
|
+
{ gene: 'Y90', protein: 'Yttrium-90 Radioembolization', pathway: 'Interventional',
|
|
947
|
+
cancerTypes: ['HCC', 'Colorectal liver mets', 'NET liver mets'],
|
|
948
|
+
approvedDrugs: ['TheraSphere', 'SIR-Spheres'],
|
|
949
|
+
mechanismOfAction: 'Intra-arterial radioactive microspheres',
|
|
950
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Liver-predominant disease' },
|
|
951
|
+
{ gene: 'IRE', protein: 'Irreversible Electroporation', pathway: 'Interventional',
|
|
952
|
+
cancerTypes: ['Pancreatic (locally advanced)', 'Liver', 'Prostate'],
|
|
953
|
+
approvedDrugs: ['NanoKnife'],
|
|
954
|
+
mechanismOfAction: 'Non-thermal ablation near vessels',
|
|
955
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Tumors near critical vessels' },
|
|
956
|
+
|
|
957
|
+
// === END-OF-LIFE AND HOSPICE ===
|
|
958
|
+
{ gene: 'Palliative-Goals', protein: 'Goals of Care Discussions', pathway: 'Palliative',
|
|
959
|
+
cancerTypes: ['Any advanced cancer'],
|
|
960
|
+
approvedDrugs: ['Serious illness conversation', 'Advance directives', 'POLST/MOLST'],
|
|
961
|
+
mechanismOfAction: 'Align treatment with patient values',
|
|
962
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Advanced cancer, prognosis <1 year' },
|
|
963
|
+
{ gene: 'Hospice', protein: 'Hospice Care', pathway: 'Palliative',
|
|
964
|
+
cancerTypes: ['Any with prognosis ≤6 months'],
|
|
965
|
+
approvedDrugs: ['Symptom management', 'Psychosocial support', 'Spiritual care', 'Bereavement'],
|
|
966
|
+
mechanismOfAction: 'Comfort-focused care at end of life',
|
|
967
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Prognosis ≤6 months, comfort focus' },
|
|
968
|
+
{ gene: 'Palliative-Sedation', protein: 'Palliative Sedation', pathway: 'Palliative',
|
|
969
|
+
cancerTypes: ['Refractory suffering at end of life'],
|
|
970
|
+
approvedDrugs: ['Midazolam', 'Propofol', 'Phenobarbital'],
|
|
971
|
+
mechanismOfAction: 'Reduce consciousness for refractory symptoms',
|
|
972
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Refractory symptoms, imminent death' },
|
|
973
|
+
|
|
974
|
+
// === CAREGIVER SUPPORT ===
|
|
975
|
+
{ gene: 'Caregiver', protein: 'Caregiver Support', pathway: 'Supportive',
|
|
976
|
+
cancerTypes: ['Any'],
|
|
977
|
+
approvedDrugs: ['Caregiver assessment', 'Respite care', 'Support groups', 'Counseling', 'Financial assistance'],
|
|
978
|
+
mechanismOfAction: 'Support informal caregivers',
|
|
979
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'All cancer patients with caregivers' },
|
|
980
|
+
|
|
981
|
+
// === FINANCIAL TOXICITY ===
|
|
982
|
+
{ gene: 'Financial', protein: 'Financial Toxicity Mitigation', pathway: 'Supportive',
|
|
983
|
+
cancerTypes: ['Any'],
|
|
984
|
+
approvedDrugs: ['Copay assistance', 'Patient assistance programs', 'Social work', 'Financial navigation', 'Generic alternatives'],
|
|
985
|
+
mechanismOfAction: 'Reduce financial burden of cancer care',
|
|
986
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Any patient with cost concerns' },
|
|
987
|
+
|
|
988
|
+
// === RARE HISTOLOGIC SUBTYPES ===
|
|
989
|
+
{ gene: 'Carcinosarcoma', protein: 'Carcinosarcoma/MMMT', pathway: 'Multiple',
|
|
990
|
+
cancerTypes: ['Uterine carcinosarcoma', 'Ovarian carcinosarcoma'],
|
|
991
|
+
approvedDrugs: ['Carboplatin/Paclitaxel', 'Ifosfamide', 'Pembrolizumab'],
|
|
992
|
+
mechanismOfAction: 'Treat as high-grade carcinoma',
|
|
993
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Biphasic tumor' },
|
|
994
|
+
{ gene: 'Adenoid-Cystic', protein: 'Adenoid Cystic Carcinoma', pathway: 'Multiple',
|
|
995
|
+
cancerTypes: ['Salivary gland', 'Breast', 'Skin', 'Tracheobronchial'],
|
|
996
|
+
approvedDrugs: ['Surgery + radiation', 'Lenvatinib (investigational)', 'Axitinib'],
|
|
997
|
+
mechanismOfAction: 'Slow-growing but persistent disease',
|
|
998
|
+
evidenceLevel: 'Phase II', biomarker: 'MYB-NFIB fusion common' },
|
|
999
|
+
{ gene: 'Clear-Cell-Sarc', protein: 'Clear Cell Sarcoma', pathway: 'Fusion',
|
|
1000
|
+
cancerTypes: ['Soft tissue (tendons)'],
|
|
1001
|
+
approvedDrugs: ['Surgery', 'Chemotherapy (limited efficacy)', 'Clinical trials'],
|
|
1002
|
+
mechanismOfAction: 'EWSR1-ATF1 fusion driven',
|
|
1003
|
+
evidenceLevel: 'Phase II', biomarker: 'EWSR1-ATF1/CREB1 fusion' },
|
|
1004
|
+
{ gene: 'Alveolar-Soft', protein: 'Alveolar Soft Part Sarcoma', pathway: 'Fusion',
|
|
1005
|
+
cancerTypes: ['Soft tissue (extremities)'],
|
|
1006
|
+
approvedDrugs: ['Atezolizumab', 'Sunitinib', 'Axitinib'],
|
|
1007
|
+
mechanismOfAction: 'ASPL-TFE3 fusion, responds to anti-angiogenics/IO',
|
|
1008
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'ASPL-TFE3 fusion' },
|
|
1009
|
+
{ gene: 'PEComa', protein: 'Perivascular Epithelioid Cell Tumor', pathway: 'mTOR',
|
|
1010
|
+
cancerTypes: ['Soft tissue', 'GI', 'Gynecologic'],
|
|
1011
|
+
approvedDrugs: ['Sirolimus', 'Nab-sirolimus'],
|
|
1012
|
+
mechanismOfAction: 'TSC/mTOR pathway driven',
|
|
1013
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'TSC1/2 alteration' },
|
|
1014
|
+
{ gene: 'GNET', protein: 'Gastrointestinal Neuroectodermal Tumor', pathway: 'Fusion',
|
|
1015
|
+
cancerTypes: ['GI tract (rare)'],
|
|
1016
|
+
approvedDrugs: ['Surgery', 'Sarcoma-type chemotherapy'],
|
|
1017
|
+
mechanismOfAction: 'EWSR1-CREB1 fusion',
|
|
1018
|
+
evidenceLevel: 'Phase II', biomarker: 'EWSR1 rearrangement' },
|
|
1019
|
+
{ gene: 'Phyllodes', protein: 'Phyllodes Tumor', pathway: 'Breast',
|
|
1020
|
+
cancerTypes: ['Breast (fibroepithelial)'],
|
|
1021
|
+
approvedDrugs: ['Wide excision', 'Mastectomy if needed', 'Radiation (borderline/malignant)'],
|
|
1022
|
+
mechanismOfAction: 'Surgical resection primary',
|
|
1023
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'MED12 mutation common' },
|
|
1024
|
+
{ gene: 'Secretory-Breast', protein: 'Secretory Breast Carcinoma', pathway: 'Fusion',
|
|
1025
|
+
cancerTypes: ['Breast (rare, often pediatric)'],
|
|
1026
|
+
approvedDrugs: ['Surgery', 'Larotrectinib/Entrectinib if TRK+'],
|
|
1027
|
+
mechanismOfAction: 'ETV6-NTRK3 fusion in most cases',
|
|
1028
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'ETV6-NTRK3 fusion' },
|
|
1029
|
+
{ gene: 'Inflammatory-Breast', protein: 'Inflammatory Breast Cancer', pathway: 'Aggressive',
|
|
1030
|
+
cancerTypes: ['Breast (IBC)'],
|
|
1031
|
+
approvedDrugs: ['Neoadjuvant chemo mandatory', 'Mastectomy', 'Radiation', 'Targeted/IO per subtype'],
|
|
1032
|
+
mechanismOfAction: 'Trimodality therapy required',
|
|
1033
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Clinical diagnosis (peau d\'orange)' },
|
|
1034
|
+
{ gene: 'Small-Cell-Ovarian', protein: 'Small Cell Ovarian (Hypercalcemic)', pathway: 'SMARCA4',
|
|
1035
|
+
cancerTypes: ['Ovary (young women)'],
|
|
1036
|
+
approvedDrugs: ['Intensive chemo', 'EZH2 inhibitors (investigational)', 'Clinical trials'],
|
|
1037
|
+
mechanismOfAction: 'SMARCA4/BRG1 loss',
|
|
1038
|
+
evidenceLevel: 'Phase II', biomarker: 'SMARCA4 mutation' },
|
|
1039
|
+
{ gene: 'Signet-Ring', protein: 'Signet Ring Cell Carcinoma', pathway: 'Aggressive',
|
|
1040
|
+
cancerTypes: ['Gastric', 'Colorectal', 'Appendiceal', 'Breast'],
|
|
1041
|
+
approvedDrugs: ['Chemotherapy (often resistant)', 'HIPEC (appendiceal)'],
|
|
1042
|
+
mechanismOfAction: 'Aggressive, chemoresistant histology',
|
|
1043
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Signet ring morphology' },
|
|
1044
|
+
{ gene: 'Plasmablastic', protein: 'Plasmablastic Lymphoma', pathway: 'Aggressive',
|
|
1045
|
+
cancerTypes: ['NHL (HIV-associated, oral)'],
|
|
1046
|
+
approvedDrugs: ['EPOCH', 'CODOX-M/IVAC', 'Bortezomib-based', 'CAR-T (investigational)'],
|
|
1047
|
+
mechanismOfAction: 'Aggressive, often EBV+',
|
|
1048
|
+
evidenceLevel: 'Phase II', biomarker: 'HIV+, EBV+' },
|
|
1049
|
+
{ gene: 'Blastic-NK', protein: 'Blastic Plasmacytoid Dendritic Cell Neoplasm', pathway: 'Aggressive',
|
|
1050
|
+
cancerTypes: ['Skin/hematologic'],
|
|
1051
|
+
approvedDrugs: ['Tagraxofusp', 'ALL-type induction', 'Transplant'],
|
|
1052
|
+
mechanismOfAction: 'CD123-targeting therapy',
|
|
1053
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'CD123+ BPDCN' },
|
|
1054
|
+
|
|
1055
|
+
// === CLINICAL TRIAL MATCHING OPTIMIZATION ===
|
|
1056
|
+
{ gene: 'TrialMatch-Biomarker', protein: 'Biomarker-Driven Trial Matching', pathway: 'Clinical Trials',
|
|
1057
|
+
cancerTypes: ['All Solid Tumors', 'All Hematologic'],
|
|
1058
|
+
approvedDrugs: ['NCI-MATCH', 'NCI-MPACT', 'TAPUR', 'My Pathway', 'Molecular Analysis for Therapy Choice'],
|
|
1059
|
+
mechanismOfAction: 'Match patients to trials based on actionable alterations',
|
|
1060
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Any actionable genomic alteration' },
|
|
1061
|
+
{ gene: 'TrialMatch-Immunotherapy', protein: 'Immunotherapy Trial Matching', pathway: 'Clinical Trials',
|
|
1062
|
+
cancerTypes: ['All Solid Tumors'],
|
|
1063
|
+
approvedDrugs: ['I-SPY 2', 'KEYNOTE trials', 'CheckMate trials', 'LEAP trials', 'MORPHEUS trials'],
|
|
1064
|
+
mechanismOfAction: 'Novel immunotherapy combinations and sequences',
|
|
1065
|
+
evidenceLevel: 'Phase III', biomarker: 'PD-L1, TMB-H, MSI-H, TILs' },
|
|
1066
|
+
{ gene: 'TrialMatch-ADC', protein: 'ADC Clinical Trial Matching', pathway: 'Clinical Trials',
|
|
1067
|
+
cancerTypes: ['Breast', 'NSCLC', 'Bladder', 'Ovarian', 'Gastric'],
|
|
1068
|
+
approvedDrugs: ['DESTINY trials', 'TROPION trials', 'PADCEV trials', 'Dato-DXd trials'],
|
|
1069
|
+
mechanismOfAction: 'Next-generation antibody-drug conjugates',
|
|
1070
|
+
evidenceLevel: 'Phase II', biomarker: 'HER2-low, TROP2, Nectin-4, FRα' },
|
|
1071
|
+
{ gene: 'TrialMatch-Bispecific', protein: 'Bispecific Antibody Trial Matching', pathway: 'Clinical Trials',
|
|
1072
|
+
cancerTypes: ['Multiple Myeloma', 'Lymphoma', 'Solid Tumors'],
|
|
1073
|
+
approvedDrugs: ['GPRC5D trials', 'FcRH5 trials', 'PSMA bispecific trials', 'DLL3 trials'],
|
|
1074
|
+
mechanismOfAction: 'T-cell engaging bispecific antibodies',
|
|
1075
|
+
evidenceLevel: 'Phase II', biomarker: 'Target antigen expression' },
|
|
1076
|
+
{ gene: 'TrialMatch-CART', protein: 'CAR-T/Cell Therapy Trial Matching', pathway: 'Clinical Trials',
|
|
1077
|
+
cancerTypes: ['B-ALL', 'DLBCL', 'Multiple Myeloma', 'Solid Tumors'],
|
|
1078
|
+
approvedDrugs: ['Allogeneic CAR-T trials', 'CAR-NK trials', 'TIL expansion trials', 'TCR-T trials'],
|
|
1079
|
+
mechanismOfAction: 'Next-generation cellular therapies',
|
|
1080
|
+
evidenceLevel: 'Phase I', biomarker: 'Relapsed/refractory, target antigen+' },
|
|
1081
|
+
{ gene: 'TrialMatch-Targeted', protein: 'Novel Targeted Therapy Trials', pathway: 'Clinical Trials',
|
|
1082
|
+
cancerTypes: ['All Solid Tumors'],
|
|
1083
|
+
approvedDrugs: ['KRAS G12D trials', 'SHP2 inhibitor trials', 'SOS1 inhibitor trials', 'CDK2 trials', 'WRN trials'],
|
|
1084
|
+
mechanismOfAction: 'Emerging targeted therapy combinations',
|
|
1085
|
+
evidenceLevel: 'Phase I', biomarker: 'KRAS G12D, STK11, KEAP1, MSS' },
|
|
1086
|
+
{ gene: 'TrialMatch-Degrader', protein: 'Protein Degrader Trial Matching', pathway: 'Clinical Trials',
|
|
1087
|
+
cancerTypes: ['Breast', 'Prostate', 'Hematologic'],
|
|
1088
|
+
approvedDrugs: ['PROTAC trials', 'Molecular glue trials', 'ER degrader trials', 'AR degrader trials'],
|
|
1089
|
+
mechanismOfAction: 'Targeted protein degradation strategies',
|
|
1090
|
+
evidenceLevel: 'Phase I', biomarker: 'ER+, AR+, undruggable targets' },
|
|
1091
|
+
{ gene: 'TrialMatch-RadioLigand', protein: 'Radioligand Therapy Trials', pathway: 'Clinical Trials',
|
|
1092
|
+
cancerTypes: ['Prostate', 'NET', 'Gastric', 'Multiple Myeloma'],
|
|
1093
|
+
approvedDrugs: ['FAP-targeted trials', 'PSMA tandem trials', 'Alpha-emitter trials', 'Actinium-225 trials'],
|
|
1094
|
+
mechanismOfAction: 'Next-generation radiopharmaceuticals',
|
|
1095
|
+
evidenceLevel: 'Phase II', biomarker: 'PSMA+, SSTR2+, FAP+' },
|
|
1096
|
+
{ gene: 'TrialMatch-Vaccine', protein: 'Cancer Vaccine Trial Matching', pathway: 'Clinical Trials',
|
|
1097
|
+
cancerTypes: ['Melanoma', 'NSCLC', 'Pancreatic', 'Colorectal'],
|
|
1098
|
+
approvedDrugs: ['mRNA neoantigen trials', 'Personalized vaccine trials', 'Viral vector trials', 'DC vaccine trials'],
|
|
1099
|
+
mechanismOfAction: 'Therapeutic cancer vaccines',
|
|
1100
|
+
evidenceLevel: 'Phase II', biomarker: 'Neoantigen burden, immunogenic tumors' },
|
|
1101
|
+
{ gene: 'TrialMatch-Epigenetic', protein: 'Epigenetic Therapy Trials', pathway: 'Clinical Trials',
|
|
1102
|
+
cancerTypes: ['AML', 'MDS', 'Lymphoma', 'Solid Tumors'],
|
|
1103
|
+
approvedDrugs: ['Menin inhibitor trials', 'EZH2 inhibitor trials', 'LSD1 inhibitor trials', 'BET inhibitor trials'],
|
|
1104
|
+
mechanismOfAction: 'Epigenetic modulation strategies',
|
|
1105
|
+
evidenceLevel: 'Phase II', biomarker: 'MLL-rearranged, NPM1, IDH' },
|
|
1106
|
+
{ gene: 'TrialMatch-Rare', protein: 'Rare Cancer Trial Matching', pathway: 'Clinical Trials',
|
|
1107
|
+
cancerTypes: ['Rare Cancers', 'Ultra-Rare Histologies'],
|
|
1108
|
+
approvedDrugs: ['CREATE trials', 'DART trials', 'NCI-COG Pediatric MATCH', 'RARE-1 trials'],
|
|
1109
|
+
mechanismOfAction: 'Dedicated rare cancer trial networks',
|
|
1110
|
+
evidenceLevel: 'Phase II', biomarker: 'Rare histology, limited treatment options' },
|
|
1111
|
+
{ gene: 'TrialMatch-Combo', protein: 'Rational Combination Trials', pathway: 'Clinical Trials',
|
|
1112
|
+
cancerTypes: ['All Solid Tumors'],
|
|
1113
|
+
approvedDrugs: ['IO + targeted trials', 'Dual checkpoint trials', 'Chemo + IO + targeted trials'],
|
|
1114
|
+
mechanismOfAction: 'Synergistic combination development',
|
|
1115
|
+
evidenceLevel: 'Phase II', biomarker: 'Based on mechanism and biomarker' },
|
|
1116
|
+
{ gene: 'TrialMatch-Neoadjuvant', protein: 'Neoadjuvant/Adjuvant Trials', pathway: 'Clinical Trials',
|
|
1117
|
+
cancerTypes: ['Breast', 'NSCLC', 'Melanoma', 'RCC', 'Bladder'],
|
|
1118
|
+
approvedDrugs: ['Perioperative IO trials', 'ctDNA-guided trials', 'De-escalation trials'],
|
|
1119
|
+
mechanismOfAction: 'Optimize perioperative therapy',
|
|
1120
|
+
evidenceLevel: 'Phase III', biomarker: 'Resectable, high-risk features' },
|
|
1121
|
+
{ gene: 'TrialMatch-ctDNA', protein: 'ctDNA-Guided Therapy Trials', pathway: 'Clinical Trials',
|
|
1122
|
+
cancerTypes: ['Colorectal', 'Breast', 'NSCLC', 'Bladder', 'All Solid'],
|
|
1123
|
+
approvedDrugs: ['CIRCULATE trials', 'DYNAMIC trials', 'ctDNA escalation trials', 'MRD-directed trials'],
|
|
1124
|
+
mechanismOfAction: 'ctDNA-based treatment decisions',
|
|
1125
|
+
evidenceLevel: 'Phase III', biomarker: 'ctDNA MRD status post-surgery' },
|
|
1126
|
+
{ gene: 'TrialMatch-Pediatric', protein: 'Pediatric Cancer Trial Matching', pathway: 'Clinical Trials',
|
|
1127
|
+
cancerTypes: ['Pediatric Solid Tumors', 'Pediatric Brain Tumors', 'Pediatric Leukemia'],
|
|
1128
|
+
approvedDrugs: ['COG trials', 'PBTC trials', 'Pediatric MATCH', 'PPTP agent trials'],
|
|
1129
|
+
mechanismOfAction: 'Age-appropriate pediatric trials',
|
|
1130
|
+
evidenceLevel: 'Phase I', biomarker: 'Age ≤21, pediatric-specific alterations' },
|
|
1131
|
+
{ gene: 'TrialMatch-AYA', protein: 'AYA-Specific Trial Matching', pathway: 'Clinical Trials',
|
|
1132
|
+
cancerTypes: ['AYA Cancers (15-39 years)'],
|
|
1133
|
+
approvedDrugs: ['AYA-focused protocols', 'Adolescent-friendly trial sites', 'Fertility-preserving trials'],
|
|
1134
|
+
mechanismOfAction: 'Age-appropriate trial design for young adults',
|
|
1135
|
+
evidenceLevel: 'Phase II', biomarker: 'Age 15-39, unique AYA biology' },
|
|
1136
|
+
{ gene: 'TrialMatch-Elderly', protein: 'Elderly/Frail Patient Trials', pathway: 'Clinical Trials',
|
|
1137
|
+
cancerTypes: ['All Cancers in Elderly'],
|
|
1138
|
+
approvedDrugs: ['Geriatric oncology trials', 'De-intensification trials', 'Tolerability-focused trials'],
|
|
1139
|
+
mechanismOfAction: 'Appropriate trials for older adults',
|
|
1140
|
+
evidenceLevel: 'Phase II', biomarker: 'Age ≥70, comorbidities, frailty' },
|
|
1141
|
+
{ gene: 'TrialMatch-RealWorld', protein: 'Real-World Evidence Integration', pathway: 'Clinical Trials',
|
|
1142
|
+
cancerTypes: ['All Cancers'],
|
|
1143
|
+
approvedDrugs: ['Pragmatic trial designs', 'Registry-embedded trials', 'EHR-integrated trials'],
|
|
1144
|
+
mechanismOfAction: 'Real-world data to expand trial access',
|
|
1145
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Broader eligibility criteria' },
|
|
1146
|
+
{ gene: 'TrialMatch-Access', protein: 'Clinical Trial Access Solutions', pathway: 'Clinical Trials',
|
|
1147
|
+
cancerTypes: ['All Cancers'],
|
|
1148
|
+
approvedDrugs: ['Decentralized trials', 'Travel support programs', 'Community site trials', 'Virtual trial visits'],
|
|
1149
|
+
mechanismOfAction: 'Remove barriers to trial participation',
|
|
1150
|
+
evidenceLevel: 'FDA-Approved', biomarker: 'Geographic/financial barriers' }
|
|
635
1151
|
];
|
|
636
1152
|
|
|
637
1153
|
// ═══════════════════════════════════════════════════════════════════════════════
|
|
@@ -1683,7 +2199,147 @@ export class CancerTreatmentCapabilityModule {
|
|
|
1683
2199
|
organization: 'Other', cancerType: 'Any with Effusion', stage: 'Metastatic',
|
|
1684
2200
|
treatmentModalities: ['Thoracentesis/Paracentesis', 'Pleurodesis', 'Indwelling Catheter', 'HIPEC (peritoneal)'],
|
|
1685
2201
|
efficacyScore: 0.70, sideEffectProfile: ['Procedure-related'],
|
|
1686
|
-
references: ['TIME trials'] }
|
|
2202
|
+
references: ['TIME trials'] },
|
|
2203
|
+
|
|
2204
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
2205
|
+
// SURVIVORSHIP PROTOCOLS
|
|
2206
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
2207
|
+
{ id: 'survivor-breast', name: 'Breast Cancer Survivorship',
|
|
2208
|
+
organization: 'ASCO', cancerType: 'Breast', stage: 'Post-Treatment',
|
|
2209
|
+
treatmentModalities: ['Annual mammography', 'Endocrine therapy adherence', 'Bone health', 'Cardiac surveillance', 'Lymphedema management'],
|
|
2210
|
+
efficacyScore: 0.95, sideEffectProfile: ['Long-term endocrine effects'],
|
|
2211
|
+
references: ['ASCO Survivorship Guidelines'] },
|
|
2212
|
+
{ id: 'survivor-colorectal', name: 'Colorectal Cancer Survivorship',
|
|
2213
|
+
organization: 'ASCO', cancerType: 'Colorectal', stage: 'Post-Treatment',
|
|
2214
|
+
treatmentModalities: ['CEA monitoring', 'Colonoscopy surveillance', 'CT scans', 'Neuropathy management'],
|
|
2215
|
+
efficacyScore: 0.90, sideEffectProfile: ['Bowel dysfunction', 'Neuropathy'],
|
|
2216
|
+
references: ['ASCO Colorectal Survivorship'] },
|
|
2217
|
+
{ id: 'survivor-lymphoma', name: 'Lymphoma Survivorship',
|
|
2218
|
+
organization: 'NCCN', cancerType: 'Lymphoma', stage: 'Post-Treatment',
|
|
2219
|
+
treatmentModalities: ['Secondary malignancy screening', 'Cardiac surveillance', 'Thyroid monitoring', 'Fertility preservation follow-up'],
|
|
2220
|
+
efficacyScore: 0.92, sideEffectProfile: ['Late effects of chemo/radiation'],
|
|
2221
|
+
references: ['NCCN Survivorship Guidelines'] },
|
|
2222
|
+
{ id: 'survivor-pediatric', name: 'Pediatric Cancer Survivorship (COG LTFU)',
|
|
2223
|
+
organization: 'Other', cancerType: 'Pediatric Cancers', stage: 'Long-Term Follow-Up',
|
|
2224
|
+
treatmentModalities: ['Risk-based surveillance', 'Cardiac echo', 'Endocrine evaluation', 'Neurocognitive assessment', 'Secondary cancer screening', 'Fertility counseling'],
|
|
2225
|
+
efficacyScore: 0.90, sideEffectProfile: ['Late effects of childhood treatment'],
|
|
2226
|
+
references: ['COG Long-Term Follow-Up Guidelines'] },
|
|
2227
|
+
{ id: 'survivor-prostate', name: 'Prostate Cancer Survivorship',
|
|
2228
|
+
organization: 'ASCO', cancerType: 'Prostate', stage: 'Post-Treatment',
|
|
2229
|
+
treatmentModalities: ['PSA monitoring', 'ADT side effect management', 'Bone health', 'Sexual function support', 'Urinary continence'],
|
|
2230
|
+
efficacyScore: 0.93, sideEffectProfile: ['ADT metabolic effects', 'ED'],
|
|
2231
|
+
references: ['ASCO Prostate Survivorship'] },
|
|
2232
|
+
|
|
2233
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
2234
|
+
// QUALITY OF LIFE PROTOCOLS
|
|
2235
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
2236
|
+
{ id: 'qol-fatigue', name: 'Cancer-Related Fatigue Management',
|
|
2237
|
+
organization: 'NCCN', cancerType: 'Any', stage: 'Any',
|
|
2238
|
+
treatmentModalities: ['Exercise prescription', 'Sleep hygiene', 'Treat anemia/depression', 'Psychostimulants if severe'],
|
|
2239
|
+
efficacyScore: 0.75, sideEffectProfile: ['Minimal'],
|
|
2240
|
+
references: ['NCCN Cancer-Related Fatigue Guidelines'] },
|
|
2241
|
+
{ id: 'qol-pain', name: 'Cancer Pain Management',
|
|
2242
|
+
organization: 'NCCN', cancerType: 'Any', stage: 'Any',
|
|
2243
|
+
treatmentModalities: ['WHO Pain Ladder', 'Opioid rotation', 'Interventional procedures', 'Palliative radiation', 'Integrative approaches'],
|
|
2244
|
+
efficacyScore: 0.85, sideEffectProfile: ['Opioid side effects'],
|
|
2245
|
+
references: ['NCCN Adult Cancer Pain'] },
|
|
2246
|
+
{ id: 'qol-nausea', name: 'Chemotherapy-Induced Nausea/Vomiting',
|
|
2247
|
+
organization: 'ASCO', cancerType: 'Any on Chemo', stage: 'Any',
|
|
2248
|
+
treatmentModalities: ['5-HT3 antagonists', 'NK1 antagonists', 'Dexamethasone', 'Olanzapine'],
|
|
2249
|
+
efficacyScore: 0.90, sideEffectProfile: ['Constipation', 'QT prolongation'],
|
|
2250
|
+
references: ['ASCO Antiemetic Guidelines'] },
|
|
2251
|
+
{ id: 'qol-neuropathy', name: 'Chemotherapy-Induced Peripheral Neuropathy',
|
|
2252
|
+
organization: 'ASCO', cancerType: 'Any', stage: 'Any',
|
|
2253
|
+
treatmentModalities: ['Duloxetine', 'Gabapentin', 'Physical therapy', 'Dose modification', 'Cryotherapy (prevention)'],
|
|
2254
|
+
efficacyScore: 0.60, sideEffectProfile: ['Drowsiness'],
|
|
2255
|
+
references: ['ASCO CIPN Guidelines'] },
|
|
2256
|
+
{ id: 'qol-psychosocial', name: 'Psychosocial Distress Management',
|
|
2257
|
+
organization: 'NCCN', cancerType: 'Any', stage: 'Any',
|
|
2258
|
+
treatmentModalities: ['Distress screening', 'Counseling', 'Support groups', 'Psychiatry referral', 'Antidepressants/anxiolytics'],
|
|
2259
|
+
efficacyScore: 0.80, sideEffectProfile: ['Medication side effects if used'],
|
|
2260
|
+
references: ['NCCN Distress Management'] },
|
|
2261
|
+
{ id: 'qol-nutrition', name: 'Cancer Nutrition Management',
|
|
2262
|
+
organization: 'Other', cancerType: 'Any', stage: 'Any',
|
|
2263
|
+
treatmentModalities: ['Nutritional assessment', 'Oral supplements', 'Enteral/parenteral if needed', 'Cachexia management'],
|
|
2264
|
+
efficacyScore: 0.75, sideEffectProfile: ['GI intolerance'],
|
|
2265
|
+
references: ['ESPEN Cancer Nutrition Guidelines'] },
|
|
2266
|
+
|
|
2267
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
2268
|
+
// SPECIAL POPULATION PROTOCOLS
|
|
2269
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
2270
|
+
{ id: 'special-hiv', name: 'Cancer in HIV/AIDS Patients',
|
|
2271
|
+
organization: 'NCCN', cancerType: 'Any in HIV+', stage: 'Any',
|
|
2272
|
+
treatmentModalities: ['Optimize ART', 'Standard cancer treatment when possible', 'Drug-drug interaction check', 'Infectious prophylaxis'],
|
|
2273
|
+
efficacyScore: 0.75, sideEffectProfile: ['Drug interactions', 'Immunosuppression'],
|
|
2274
|
+
references: ['NCI HIV/AIDS Malignancy Guidelines'] },
|
|
2275
|
+
{ id: 'special-transplant-cancer', name: 'Cancer in Transplant Recipients',
|
|
2276
|
+
organization: 'Other', cancerType: 'Any post-transplant', stage: 'Any',
|
|
2277
|
+
treatmentModalities: ['Reduce immunosuppression if possible', 'Switch to mTOR inhibitor', 'Standard cancer therapy with caution', 'Consider rejection risk'],
|
|
2278
|
+
efficacyScore: 0.65, sideEffectProfile: ['Rejection risk', 'Infection'],
|
|
2279
|
+
references: ['Transplant oncology consensus'] },
|
|
2280
|
+
{ id: 'special-dialysis', name: 'Cancer in Dialysis Patients',
|
|
2281
|
+
organization: 'Other', cancerType: 'Any on Dialysis', stage: 'Any',
|
|
2282
|
+
treatmentModalities: ['Dose-adjusted chemotherapy', 'Dialysis timing coordination', 'RCC screening', 'Consider transplant candidacy'],
|
|
2283
|
+
efficacyScore: 0.60, sideEffectProfile: ['Altered pharmacokinetics'],
|
|
2284
|
+
references: ['Renal impairment dosing guidelines'] },
|
|
2285
|
+
{ id: 'special-liver-impaired', name: 'Cancer with Liver Dysfunction',
|
|
2286
|
+
organization: 'Other', cancerType: 'Any with Liver Dysfunction', stage: 'Any',
|
|
2287
|
+
treatmentModalities: ['Child-Pugh adjusted dosing', 'Avoid hepatotoxic agents', 'Close LFT monitoring'],
|
|
2288
|
+
efficacyScore: 0.55, sideEffectProfile: ['Hepatotoxicity risk'],
|
|
2289
|
+
references: ['Hepatic impairment dosing guidelines'] },
|
|
2290
|
+
{ id: 'special-adolescent-young-adult', name: 'Adolescent/Young Adult (AYA) Cancer',
|
|
2291
|
+
organization: 'NCCN', cancerType: 'AYA Cancers (15-39)', stage: 'Any',
|
|
2292
|
+
treatmentModalities: ['Age-appropriate protocols', 'Fertility preservation', 'Psychosocial support', 'Financial navigation', 'Transition planning'],
|
|
2293
|
+
efficacyScore: 0.85, sideEffectProfile: ['Long-term survivorship issues'],
|
|
2294
|
+
references: ['NCCN AYA Oncology'] },
|
|
2295
|
+
{ id: 'special-second-primary', name: 'Second Primary Malignancy',
|
|
2296
|
+
organization: 'Other', cancerType: 'Second Primary Cancer', stage: 'Any',
|
|
2297
|
+
treatmentModalities: ['Treat as new primary', 'Consider prior treatment toxicities', 'Cumulative dose limits', 'Genetic evaluation'],
|
|
2298
|
+
efficacyScore: 0.70, sideEffectProfile: ['Prior treatment effects'],
|
|
2299
|
+
references: ['Second malignancy management guidelines'] },
|
|
2300
|
+
|
|
2301
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
2302
|
+
// ETHNIC AND POPULATION-SPECIFIC CONSIDERATIONS
|
|
2303
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
2304
|
+
{ id: 'ethnic-pharmacogenomics', name: 'Pharmacogenomic-Guided Therapy',
|
|
2305
|
+
organization: 'FDA', cancerType: 'Any', stage: 'Any',
|
|
2306
|
+
treatmentModalities: ['DPYD testing (5-FU)', 'UGT1A1 testing (Irinotecan)', 'TPMT/NUDT15 (Thiopurines)', 'G6PD (Rasburicase)'],
|
|
2307
|
+
efficacyScore: 0.90, sideEffectProfile: ['Prevents severe toxicity'],
|
|
2308
|
+
references: ['CPIC Guidelines', 'FDA drug labels'] },
|
|
2309
|
+
{ id: 'ethnic-asian-egfr', name: 'EGFR in East Asian NSCLC',
|
|
2310
|
+
organization: 'Other', cancerType: 'NSCLC (East Asian)', stage: 'Any',
|
|
2311
|
+
treatmentModalities: ['Higher EGFR mutation rate (~50%)', 'First-line TKI', 'Osimertinib preferred'],
|
|
2312
|
+
efficacyScore: 0.85, sideEffectProfile: ['Standard TKI toxicities'],
|
|
2313
|
+
references: ['Asian NSCLC molecular epidemiology'] },
|
|
2314
|
+
{ id: 'ethnic-tnbc-african', name: 'TNBC in African Descent',
|
|
2315
|
+
organization: 'Other', cancerType: 'TNBC (African descent)', stage: 'Any',
|
|
2316
|
+
treatmentModalities: ['Higher incidence', 'Standard TNBC protocols', 'Ensure access to immunotherapy', 'Clinical trial enrollment'],
|
|
2317
|
+
efficacyScore: 0.75, sideEffectProfile: ['Standard toxicities'],
|
|
2318
|
+
references: ['Cancer disparities research'] },
|
|
2319
|
+
{ id: 'ethnic-multiple-myeloma-african', name: 'Multiple Myeloma in African Descent',
|
|
2320
|
+
organization: 'Other', cancerType: 'Multiple Myeloma (African descent)', stage: 'Any',
|
|
2321
|
+
treatmentModalities: ['2x higher incidence', 'Standard MM protocols', 'Consider earlier transplant', 'Equal access to novel therapies'],
|
|
2322
|
+
efficacyScore: 0.75, sideEffectProfile: ['Standard toxicities'],
|
|
2323
|
+
references: ['Myeloma disparities literature'] },
|
|
2324
|
+
|
|
2325
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
2326
|
+
// PREVENTION AND RISK REDUCTION
|
|
2327
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
2328
|
+
{ id: 'prevention-brca-rrso', name: 'BRCA Risk-Reducing Surgery',
|
|
2329
|
+
organization: 'NCCN', cancerType: 'BRCA1/2 Carrier', stage: 'Prevention',
|
|
2330
|
+
treatmentModalities: ['Risk-reducing salpingo-oophorectomy', 'Risk-reducing mastectomy', 'Enhanced surveillance', 'Chemoprevention options'],
|
|
2331
|
+
efficacyScore: 0.95, sideEffectProfile: ['Surgical menopause', 'QoL effects'],
|
|
2332
|
+
references: ['NCCN Genetic/Familial High-Risk'] },
|
|
2333
|
+
{ id: 'prevention-lynch-colon', name: 'Lynch Syndrome Surveillance',
|
|
2334
|
+
organization: 'NCCN', cancerType: 'Lynch Syndrome', stage: 'Prevention',
|
|
2335
|
+
treatmentModalities: ['Colonoscopy q1-2 years from age 20-25', 'Consider prophylactic hysterectomy/BSO', 'Aspirin (investigational)'],
|
|
2336
|
+
efficacyScore: 0.85, sideEffectProfile: ['Procedural risks'],
|
|
2337
|
+
references: ['NCCN Lynch Syndrome'] },
|
|
2338
|
+
{ id: 'prevention-fap', name: 'FAP Prophylactic Colectomy',
|
|
2339
|
+
organization: 'NCCN', cancerType: 'FAP', stage: 'Prevention',
|
|
2340
|
+
treatmentModalities: ['Prophylactic colectomy (late teens/early 20s)', 'Endoscopic surveillance', 'Sulindac/Celecoxib for adenomas'],
|
|
2341
|
+
efficacyScore: 0.95, sideEffectProfile: ['Surgical morbidity'],
|
|
2342
|
+
references: ['NCCN Colorectal Cancer Screening'] }
|
|
1687
2343
|
];
|
|
1688
2344
|
|
|
1689
2345
|
constructor() {
|