@eminent337/aery 0.1.63 → 0.1.65

package/dist/core/package-manager.d.ts

@@ -1,199 +0,0 @@
-import type { SettingsManager } from "./settings-manager.js";
-export interface PathMetadata {
-    source: string;
-    scope: SourceScope;
-    origin: "package" | "top-level";
-    baseDir?: string;
-}
-export interface ResolvedResource {
-    path: string;
-    enabled: boolean;
-    metadata: PathMetadata;
-}
-export interface ResolvedPaths {
-    extensions: ResolvedResource[];
-    skills: ResolvedResource[];
-    prompts: ResolvedResource[];
-    themes: ResolvedResource[];
-}
-export type MissingSourceAction = "install" | "skip" | "error";
-export interface ProgressEvent {
-    type: "start" | "progress" | "complete" | "error";
-    action: "install" | "remove" | "update" | "clone" | "pull";
-    source: string;
-    message?: string;
-}
-export type ProgressCallback = (event: ProgressEvent) => void;
-export interface PackageUpdate {
-    source: string;
-    displayName: string;
-    type: "npm" | "git";
-    scope: Exclude<SourceScope, "temporary">;
-}
-export interface ConfiguredPackage {
-    source: string;
-    scope: "user" | "project";
-    filtered: boolean;
-    installedPath?: string;
-}
-export interface PackageManager {
-    resolve(onMissing?: (source: string) => Promise<MissingSourceAction>): Promise<ResolvedPaths>;
-    install(source: string, options?: {
-        local?: boolean;
-    }): Promise<void>;
-    installAndPersist(source: string, options?: {
-        local?: boolean;
-    }): Promise<void>;
-    remove(source: string, options?: {
-        local?: boolean;
-    }): Promise<void>;
-    removeAndPersist(source: string, options?: {
-        local?: boolean;
-    }): Promise<boolean>;
-    update(source?: string): Promise<void>;
-    listConfiguredPackages(): ConfiguredPackage[];
-    resolveExtensionSources(sources: string[], options?: {
-        local?: boolean;
-        temporary?: boolean;
-    }): Promise<ResolvedPaths>;
-    addSourceToSettings(source: string, options?: {
-        local?: boolean;
-    }): boolean;
-    removeSourceFromSettings(source: string, options?: {
-        local?: boolean;
-    }): boolean;
-    setProgressCallback(callback: ProgressCallback | undefined): void;
-    getInstalledPath(source: string, scope: "user" | "project"): string | undefined;
-}
-interface PackageManagerOptions {
-    cwd: string;
-    agentDir: string;
-    settingsManager: SettingsManager;
-}
-type SourceScope = "user" | "project" | "temporary";
-export declare class DefaultPackageManager implements PackageManager {
-    private cwd;
-    private agentDir;
-    private settingsManager;
-    private globalNpmRoot;
-    private globalNpmRootCommandKey;
-    private progressCallback;
-    constructor(options: PackageManagerOptions);
-    setProgressCallback(callback: ProgressCallback | undefined): void;
-    addSourceToSettings(source: string, options?: {
-        local?: boolean;
-    }): boolean;
-    removeSourceFromSettings(source: string, options?: {
-        local?: boolean;
-    }): boolean;
-    getInstalledPath(source: string, scope: "user" | "project"): string | undefined;
-    private emitProgress;
-    private withProgress;
-    resolve(onMissing?: (source: string) => Promise<MissingSourceAction>): Promise<ResolvedPaths>;
-    resolveExtensionSources(sources: string[], options?: {
-        local?: boolean;
-        temporary?: boolean;
-    }): Promise<ResolvedPaths>;
-    listConfiguredPackages(): ConfiguredPackage[];
-    install(source: string, options?: {
-        local?: boolean;
-    }): Promise<void>;
-    installAndPersist(source: string, options?: {
-        local?: boolean;
-    }): Promise<void>;
-    remove(source: string, options?: {
-        local?: boolean;
-    }): Promise<void>;
-    removeAndPersist(source: string, options?: {
-        local?: boolean;
-    }): Promise<boolean>;
-    update(source?: string): Promise<void>;
-    private updateConfiguredSources;
-    private shouldUpdateNpmSource;
-    private updateNpmBatch;
-    private installNpmBatch;
-    checkForAvailableUpdates(): Promise<PackageUpdate[]>;
-    private resolvePackageSources;
-    private resolveLocalExtensionSource;
-    private installParsedSource;
-    private getPackageSourceString;
-    private getSourceMatchKeyForInput;
-    private getSourceMatchKeyForSettings;
-    private buildNoMatchingPackageMessage;
-    private findSuggestedConfiguredSource;
-    private packageSourcesMatch;
-    private normalizePackageSourceForSettings;
-    private parseSource;
-    private installedNpmMatchesPinnedVersion;
-    private npmHasAvailableUpdate;
-    private getInstalledNpmVersion;
-    private getLatestNpmVersion;
-    private gitHasAvailableUpdate;
-    private getRemoteGitHead;
-    private getLocalGitUpdateTarget;
-    private getGitUpstreamRef;
-    private runGitRemoteCommand;
-    private runWithConcurrency;
-    /**
-     * Get a unique identity for a package, ignoring version/ref.
-     * Used to detect when the same package is in both global and project settings.
-     * For git packages, uses normalized host/path to ensure SSH and HTTPS URLs
-     * for the same repository are treated as identical.
-     */
-    private getPackageIdentity;
-    /**
-     * Dedupe packages: if same package identity appears in both global and project,
-     * keep only the project one (project wins).
-     */
-    private dedupePackages;
-    private parseNpmSpec;
-    private getNpmCommand;
-    private runNpmCommand;
-    private getGitDependencyInstallArgs;
-    private runNpmCommandSync;
-    private installNpm;
-    private uninstallNpm;
-    private installGit;
-    private updateGit;
-    private refreshTemporaryGitSource;
-    private removeGit;
-    private pruneEmptyGitParents;
-    private ensureNpmProject;
-    private ensureGitIgnore;
-    private getNpmInstallRoot;
-    private getGlobalNpmRoot;
-    private getNpmInstallPath;
-    private getGitInstallPath;
-    private getGitInstallRoot;
-    private getTemporaryDir;
-    private getBaseDirForScope;
-    private resolvePath;
-    private resolvePathFromBase;
-    private collectPackageResources;
-    private collectDefaultResources;
-    private applyPackageFilter;
-    /**
-     * Collect all files from a package for a resource type, applying manifest patterns.
-     * Returns { allFiles, enabledByManifest } where enabledByManifest is the set of files
-     * that pass the manifest's own patterns.
-     */
-    private collectManifestFiles;
-    private readPiManifest;
-    private addManifestEntries;
-    private collectFilesFromManifestEntries;
-    private resolveLocalEntries;
-    private addAutoDiscoveredResources;
-    private collectFilesFromPaths;
-    private getTargetMap;
-    private addResource;
-    private createAccumulator;
-    private toResolvedPaths;
-    private shouldUseWindowsShell;
-    private spawnCommand;
-    private spawnCaptureCommand;
-    private runCommandCapture;
-    private runCommand;
-    private runCommandSync;
-}
-export {};
-//# sourceMappingURL=package-manager.d.ts.map

package/dist/core/package-manager.d.ts.map

@@ -1 +0,0 @@
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{ type ChildProcess, type ChildProcessByStdio, spawn, spawnSync } from \"node:child_process\";\nimport { createHash } from \"node:crypto\";\nimport { existsSync, mkdirSync, readdirSync, readFileSync, rmSync, statSync, writeFileSync } from \"node:fs\";\nimport { homedir, tmpdir } from \"node:os\";\n\nfunction getEnv(): NodeJS.ProcessEnv {\n\tif (process.platform !== \"linux\" || Object.keys(process.env).length > 0) {\n\t\treturn process.env;\n\t}\n\ttry {\n\t\tconst data = readFileSync(\"/proc/self/environ\", \"utf-8\");\n\t\tconst env: NodeJS.ProcessEnv = {};\n\t\tfor (const entry of data.split(\"\\0\")) {\n\t\t\tconst idx = entry.indexOf(\"=\");\n\t\t\tif (idx > 0) {\n\t\t\t\tenv[entry.slice(0, idx)] = entry.slice(idx + 1);\n\t\t\t}\n\t\t}\n\t\treturn env;\n\t} catch {\n\t\treturn process.env;\n\t}\n}\n\nimport { basename, dirname, join, relative, resolve, sep } from \"node:path\";\nimport type { Readable } from \"node:stream\";\nimport { globSync } from \"glob\";\nimport ignore from \"ignore\";\nimport { minimatch } from \"minimatch\";\nimport { CONFIG_DIR_NAME } from \"../config.js\";\nimport { type GitSource, parseGitUrl } from \"../utils/git.js\";\nimport { canonicalizePath, isLocalPath } from \"../utils/paths.js\";\nimport { isStdoutTakenOver } from \"./output-guard.js\";\nimport type { PackageSource, SettingsManager } from \"./settings-manager.js\";\n\nconst NETWORK_TIMEOUT_MS = 10000;\nconst UPDATE_CHECK_CONCURRENCY = 4;\nconst GIT_UPDATE_CONCURRENCY = 4;\n\nfunction isOfflineModeEnabled(): boolean {\n\tconst value = process.env.PI_OFFLINE;\n\tif (!value) return false;\n\treturn value === \"1\" || value.toLowerCase() === \"true\" || value.toLowerCase() === \"yes\";\n}\n\nexport interface PathMetadata {\n\tsource: string;\n\tscope: SourceScope;\n\torigin: \"package\" | \"top-level\";\n\tbaseDir?: string;\n}\n\nexport interface ResolvedResource {\n\tpath: string;\n\tenabled: boolean;\n\tmetadata: PathMetadata;\n}\n\nexport interface ResolvedPaths {\n\textensions: ResolvedResource[];\n\tskills: ResolvedResource[];\n\tprompts: ResolvedResource[];\n\tthemes: ResolvedResource[];\n}\n\nexport type MissingSourceAction = \"install\" | \"skip\" | \"error\";\n\nexport interface ProgressEvent {\n\ttype: \"start\" | \"progress\" | \"complete\" | \"error\";\n\taction: \"install\" | \"remove\" | \"update\" | \"clone\" | \"pull\";\n\tsource: string;\n\tmessage?: string;\n}\n\nexport type ProgressCallback = (event: ProgressEvent) => void;\n\nexport interface PackageUpdate {\n\tsource: string;\n\tdisplayName: string;\n\ttype: \"npm\" | \"git\";\n\tscope: Exclude<SourceScope, \"temporary\">;\n}\n\nexport interface ConfiguredPackage {\n\tsource: string;\n\tscope: \"user\" | \"project\";\n\tfiltered: boolean;\n\tinstalledPath?: string;\n}\n\nexport interface PackageManager {\n\tresolve(onMissing?: (source: string) => Promise<MissingSourceAction>): Promise<ResolvedPaths>;\n\tinstall(source: string, options?: { local?: boolean }): Promise<void>;\n\tinstallAndPersist(source: string, options?: { local?: boolean }): Promise<void>;\n\tremove(source: string, options?: { local?: boolean }): Promise<void>;\n\tremoveAndPersist(source: string, options?: { local?: boolean }): Promise<boolean>;\n\tupdate(source?: string): Promise<void>;\n\tlistConfiguredPackages(): ConfiguredPackage[];\n\tresolveExtensionSources(\n\t\tsources: string[],\n\t\toptions?: { local?: boolean; temporary?: boolean },\n\t): Promise<ResolvedPaths>;\n\taddSourceToSettings(source: string, options?: { local?: boolean }): boolean;\n\tremoveSourceFromSettings(source: string, options?: { local?: boolean }): boolean;\n\tsetProgressCallback(callback: ProgressCallback | undefined): void;\n\tgetInstalledPath(source: string, scope: \"user\" | \"project\"): string | undefined;\n}\n\ninterface PackageManagerOptions {\n\tcwd: string;\n\tagentDir: string;\n\tsettingsManager: SettingsManager;\n}\n\ntype SourceScope = \"user\" | \"project\" | \"temporary\";\n\ntype NpmSource = {\n\ttype: \"npm\";\n\tspec: string;\n\tname: string;\n\tpinned: boolean;\n};\n\ntype LocalSource = {\n\ttype: \"local\";\n\tpath: string;\n};\n\ntype ParsedSource = NpmSource | GitSource | LocalSource;\n\ntype InstalledSourceScope = Exclude<SourceScope, \"temporary\">;\n\ninterface ConfiguredUpdateSource {\n\tsource: string;\n\tscope: InstalledSourceScope;\n}\n\ninterface NpmUpdateTarget extends ConfiguredUpdateSource {\n\tparsed: NpmSource;\n}\n\ninterface GitUpdateTarget extends ConfiguredUpdateSource {\n\tparsed: GitSource;\n}\n\ninterface PiManifest {\n\textensions?: string[];\n\tskills?: string[];\n\tprompts?: string[];\n\tthemes?: string[];\n}\n\ninterface ResourceAccumulator {\n\textensions: Map<string, { metadata: PathMetadata; enabled: boolean }>;\n\tskills: Map<string, { metadata: PathMetadata; enabled: boolean }>;\n\tprompts: Map<string, { metadata: PathMetadata; enabled: boolean }>;\n\tthemes: Map<string, { metadata: PathMetadata; enabled: boolean }>;\n}\n\n/**\n * Compute a numeric precedence rank for a resource based on its metadata.\n * Lower rank = higher precedence. Used to sort resolved resources so that\n * name-collision resolution (\"first wins\") produces the correct outcome.\n *\n * Precedence (highest to lowest):\n *   0  project + settings entry (source: \"local\", scope: \"project\")\n *   1  project + auto-discovered (source: \"auto\", scope: \"project\")\n *   2  user + settings entry (source: \"local\", scope: \"user\")\n *   3  user + auto-discovered (source: \"auto\", scope: \"user\")\n *   4  package resource (origin: \"package\")\n */\nfunction resourcePrecedenceRank(m: PathMetadata): number {\n\tif (m.origin === \"package\") return 4;\n\tconst scopeBase = m.scope === \"project\" ? 0 : 2;\n\treturn scopeBase + (m.source === \"local\" ? 0 : 1);\n}\n\ninterface PackageFilter {\n\textensions?: string[];\n\tskills?: string[];\n\tprompts?: string[];\n\tthemes?: string[];\n}\n\ntype ResourceType = \"extensions\" | \"skills\" | \"prompts\" | \"themes\";\n\nconst RESOURCE_TYPES: ResourceType[] = [\"extensions\", \"skills\", \"prompts\", \"themes\"];\n\nconst FILE_PATTERNS: Record<ResourceType, RegExp> = {\n\textensions: /\\.(ts|js)$/,\n\tskills: /\\.md$/,\n\tprompts: /\\.md$/,\n\tthemes: /\\.json$/,\n};\n\nconst IGNORE_FILE_NAMES = [\".gitignore\", \".ignore\", \".fdignore\"];\n\ntype IgnoreMatcher = ReturnType<typeof ignore>;\n\nfunction toPosixPath(p: string): string {\n\treturn p.split(sep).join(\"/\");\n}\n\nfunction getHomeDir(): string {\n\treturn process.env.HOME || homedir();\n}\n\nfunction prefixIgnorePattern(line: string, prefix: string): string | null {\n\tconst trimmed = line.trim();\n\tif (!trimmed) return null;\n\tif (trimmed.startsWith(\"#\") && !trimmed.startsWith(\"\\\\#\")) return null;\n\n\tlet pattern = line;\n\tlet negated = false;\n\n\tif (pattern.startsWith(\"!\")) {\n\t\tnegated = true;\n\t\tpattern = pattern.slice(1);\n\t} else if (pattern.startsWith(\"\\\\!\")) {\n\t\tpattern = pattern.slice(1);\n\t}\n\n\tif (pattern.startsWith(\"/\")) {\n\t\tpattern = pattern.slice(1);\n\t}\n\n\tconst prefixed = prefix ? `${prefix}${pattern}` : pattern;\n\treturn negated ? `!${prefixed}` : prefixed;\n}\n\nfunction addIgnoreRules(ig: IgnoreMatcher, dir: string, rootDir: string): void {\n\tconst relativeDir = relative(rootDir, dir);\n\tconst prefix = relativeDir ? `${toPosixPath(relativeDir)}/` : \"\";\n\n\tfor (const filename of IGNORE_FILE_NAMES) {\n\t\tconst ignorePath = join(dir, filename);\n\t\tif (!existsSync(ignorePath)) continue;\n\t\ttry {\n\t\t\tconst content = readFileSync(ignorePath, \"utf-8\");\n\t\t\tconst patterns = content\n\t\t\t\t.split(/\\r?\\n/)\n\t\t\t\t.map((line) => prefixIgnorePattern(line, prefix))\n\t\t\t\t.filter((line): line is string => Boolean(line));\n\t\t\tif (patterns.length > 0) {\n\t\t\t\tig.add(patterns);\n\t\t\t}\n\t\t} catch {}\n\t}\n}\n\nfunction isPattern(s: string): boolean {\n\treturn s.startsWith(\"!\") || s.startsWith(\"+\") || s.startsWith(\"-\") || s.includes(\"*\") || s.includes(\"?\");\n}\n\nfunction isOverridePattern(s: string): boolean {\n\treturn s.startsWith(\"!\") || s.startsWith(\"+\") || s.startsWith(\"-\");\n}\n\nfunction hasGlobPattern(s: string): boolean {\n\treturn s.includes(\"*\") || s.includes(\"?\");\n}\n\nfunction splitPatterns(entries: string[]): { plain: string[]; patterns: string[] } {\n\tconst plain: string[] = [];\n\tconst patterns: string[] = [];\n\tfor (const entry of entries) {\n\t\tif (isPattern(entry)) {\n\t\t\tpatterns.push(entry);\n\t\t} else {\n\t\t\tplain.push(entry);\n\t\t}\n\t}\n\treturn { plain, patterns };\n}\n\nfunction collectFiles(\n\tdir: string,\n\tfilePattern: RegExp,\n\tskipNodeModules = true,\n\tignoreMatcher?: IgnoreMatcher,\n\trootDir?: string,\n): string[] {\n\tconst files: string[] = [];\n\tif (!existsSync(dir)) return files;\n\n\tconst root = rootDir ?? dir;\n\tconst ig = ignoreMatcher ?? ignore();\n\taddIgnoreRules(ig, dir, root);\n\n\ttry {\n\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\t\tfor (const entry of entries) {\n\t\t\tif (entry.name.startsWith(\".\")) continue;\n\t\t\tif (skipNodeModules && entry.name === \"node_modules\") continue;\n\n\t\t\tconst fullPath = join(dir, entry.name);\n\t\t\tlet isDir = entry.isDirectory();\n\t\t\tlet isFile = entry.isFile();\n\n\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\ttry {\n\t\t\t\t\tconst stats = statSync(fullPath);\n\t\t\t\t\tisDir = stats.isDirectory();\n\t\t\t\t\tisFile = stats.isFile();\n\t\t\t\t} catch {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tconst relPath = toPosixPath(relative(root, fullPath));\n\t\t\tconst ignorePath = isDir ? `${relPath}/` : relPath;\n\t\t\tif (ig.ignores(ignorePath)) continue;\n\n\t\t\tif (isDir) {\n\t\t\t\tfiles.push(...collectFiles(fullPath, filePattern, skipNodeModules, ig, root));\n\t\t\t} else if (isFile && filePattern.test(entry.name)) {\n\t\t\t\tfiles.push(fullPath);\n\t\t\t}\n\t\t}\n\t} catch {\n\t\t// Ignore errors\n\t}\n\n\treturn files;\n}\n\ntype SkillDiscoveryMode = \"aery\" | \"agents\";\n\nfunction collectSkillEntries(\n\tdir: string,\n\tmode: SkillDiscoveryMode,\n\tignoreMatcher?: IgnoreMatcher,\n\trootDir?: string,\n): string[] {\n\tconst entries: string[] = [];\n\tif (!existsSync(dir)) return entries;\n\n\tconst root = rootDir ?? dir;\n\tconst ig = ignoreMatcher ?? ignore();\n\taddIgnoreRules(ig, dir, root);\n\n\ttry {\n\t\tconst dirEntries = readdirSync(dir, { withFileTypes: true });\n\n\t\tfor (const entry of dirEntries) {\n\t\t\tif (entry.name !== \"SKILL.md\") {\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\tconst fullPath = join(dir, entry.name);\n\t\t\tlet isFile = entry.isFile();\n\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\ttry {\n\t\t\t\t\tisFile = statSync(fullPath).isFile();\n\t\t\t\t} catch {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tconst relPath = toPosixPath(relative(root, fullPath));\n\t\t\tif (isFile && !ig.ignores(relPath)) {\n\t\t\t\tentries.push(fullPath);\n\t\t\t\treturn entries;\n\t\t\t}\n\t\t}\n\n\t\tfor (const entry of dirEntries) {\n\t\t\tif (entry.name.startsWith(\".\")) continue;\n\t\t\tif (entry.name === \"node_modules\") continue;\n\n\t\t\tconst fullPath = join(dir, entry.name);\n\t\t\tlet isDir = entry.isDirectory();\n\t\t\tlet isFile = entry.isFile();\n\n\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\ttry {\n\t\t\t\t\tconst stats = statSync(fullPath);\n\t\t\t\t\tisDir = stats.isDirectory();\n\t\t\t\t\tisFile = stats.isFile();\n\t\t\t\t} catch {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tconst relPath = toPosixPath(relative(root, fullPath));\n\t\t\tif (mode === \"aery\" && dir === root && isFile && entry.name.endsWith(\".md\") && !ig.ignores(relPath)) {\n\t\t\t\tentries.push(fullPath);\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\tif (!isDir) continue;\n\t\t\tif (ig.ignores(`${relPath}/`)) continue;\n\n\t\t\tentries.push(...collectSkillEntries(fullPath, mode, ig, root));\n\t\t}\n\t} catch {\n\t\t// Ignore errors\n\t}\n\n\treturn entries;\n}\n\nfunction collectAutoSkillEntries(dir: string, mode: SkillDiscoveryMode): string[] {\n\treturn collectSkillEntries(dir, mode);\n}\n\nfunction findGitRepoRoot(startDir: string): string | null {\n\tlet dir = resolve(startDir);\n\twhile (true) {\n\t\tif (existsSync(join(dir, \".git\"))) {\n\t\t\treturn dir;\n\t\t}\n\t\tconst parent = dirname(dir);\n\t\tif (parent === dir) {\n\t\t\treturn null;\n\t\t}\n\t\tdir = parent;\n\t}\n}\n\nfunction collectAncestorAgentsSkillDirs(startDir: string): string[] {\n\tconst skillDirs: string[] = [];\n\tconst resolvedStartDir = resolve(startDir);\n\tconst gitRepoRoot = findGitRepoRoot(resolvedStartDir);\n\n\tlet dir = resolvedStartDir;\n\twhile (true) {\n\t\tskillDirs.push(join(dir, \".agents\", \"skills\"));\n\t\tif (gitRepoRoot && dir === gitRepoRoot) {\n\t\t\tbreak;\n\t\t}\n\t\tconst parent = dirname(dir);\n\t\tif (parent === dir) {\n\t\t\tbreak;\n\t\t}\n\t\tdir = parent;\n\t}\n\n\treturn skillDirs;\n}\n\nfunction collectAutoPromptEntries(dir: string): string[] {\n\tconst entries: string[] = [];\n\tif (!existsSync(dir)) return entries;\n\n\tconst ig = ignore();\n\taddIgnoreRules(ig, dir, dir);\n\n\ttry {\n\t\tconst dirEntries = readdirSync(dir, { withFileTypes: true });\n\t\tfor (const entry of dirEntries) {\n\t\t\tif (entry.name.startsWith(\".\")) continue;\n\t\t\tif (entry.name === \"node_modules\") continue;\n\n\t\t\tconst fullPath = join(dir, entry.name);\n\t\t\tlet isFile = entry.isFile();\n\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\ttry {\n\t\t\t\t\tisFile = statSync(fullPath).isFile();\n\t\t\t\t} catch {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tconst relPath = toPosixPath(relative(dir, fullPath));\n\t\t\tif (ig.ignores(relPath)) continue;\n\n\t\t\tif (isFile && entry.name.endsWith(\".md\")) {\n\t\t\t\tentries.push(fullPath);\n\t\t\t}\n\t\t}\n\t} catch {\n\t\t// Ignore errors\n\t}\n\n\treturn entries;\n}\n\nfunction collectAutoThemeEntries(dir: string): string[] {\n\tconst entries: string[] = [];\n\tif (!existsSync(dir)) return entries;\n\n\tconst ig = ignore();\n\taddIgnoreRules(ig, dir, dir);\n\n\ttry {\n\t\tconst dirEntries = readdirSync(dir, { withFileTypes: true });\n\t\tfor (const entry of dirEntries) {\n\t\t\tif (entry.name.startsWith(\".\")) continue;\n\t\t\tif (entry.name === \"node_modules\") continue;\n\n\t\t\tconst fullPath = join(dir, entry.name);\n\t\t\tlet isFile = entry.isFile();\n\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\ttry {\n\t\t\t\t\tisFile = statSync(fullPath).isFile();\n\t\t\t\t} catch {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tconst relPath = toPosixPath(relative(dir, fullPath));\n\t\t\tif (ig.ignores(relPath)) continue;\n\n\t\t\tif (isFile && entry.name.endsWith(\".json\")) {\n\t\t\t\tentries.push(fullPath);\n\t\t\t}\n\t\t}\n\t} catch {\n\t\t// Ignore errors\n\t}\n\n\treturn entries;\n}\n\nfunction readPiManifestFile(packageJsonPath: string): PiManifest | null {\n\ttry {\n\t\tconst content = readFileSync(packageJsonPath, \"utf-8\");\n\t\tconst pkg = JSON.parse(content) as { pi?: PiManifest; aery?: PiManifest };\n\t\treturn pkg.aery ?? pkg.pi ?? null;\n\t} catch {\n\t\treturn null;\n\t}\n}\n\nfunction resolveExtensionEntries(dir: string): string[] | null {\n\tconst packageJsonPath = join(dir, \"package.json\");\n\tif (existsSync(packageJsonPath)) {\n\t\tconst manifest = readPiManifestFile(packageJsonPath);\n\t\tif (manifest?.extensions?.length) {\n\t\t\tconst entries: string[] = [];\n\t\t\tfor (const extPath of manifest.extensions) {\n\t\t\t\tconst resolvedExtPath = resolve(dir, extPath);\n\t\t\t\tif (existsSync(resolvedExtPath)) {\n\t\t\t\t\tentries.push(resolvedExtPath);\n\t\t\t\t}\n\t\t\t}\n\t\t\tif (entries.length > 0) {\n\t\t\t\treturn entries;\n\t\t\t}\n\t\t}\n\t}\n\n\tconst indexTs = join(dir, \"index.ts\");\n\tconst indexJs = join(dir, \"index.js\");\n\tif (existsSync(indexTs)) {\n\t\treturn [indexTs];\n\t}\n\tif (existsSync(indexJs)) {\n\t\treturn [indexJs];\n\t}\n\n\treturn null;\n}\n\nfunction collectAutoExtensionEntries(dir: string): string[] {\n\tconst entries: string[] = [];\n\tif (!existsSync(dir)) return entries;\n\n\t// First check if this directory itself has explicit extension entries (package.json or index)\n\tconst rootEntries = resolveExtensionEntries(dir);\n\tif (rootEntries) {\n\t\treturn rootEntries;\n\t}\n\n\t// Otherwise, discover extensions from directory contents\n\tconst ig = ignore();\n\taddIgnoreRules(ig, dir, dir);\n\n\ttry {\n\t\tconst dirEntries = readdirSync(dir, { withFileTypes: true });\n\t\tfor (const entry of dirEntries) {\n\t\t\tif (entry.name.startsWith(\".\")) continue;\n\t\t\tif (entry.name === \"node_modules\") continue;\n\n\t\t\tconst fullPath = join(dir, entry.name);\n\t\t\tlet isDir = entry.isDirectory();\n\t\t\tlet isFile = entry.isFile();\n\n\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\ttry {\n\t\t\t\t\tconst stats = statSync(fullPath);\n\t\t\t\t\tisDir = stats.isDirectory();\n\t\t\t\t\tisFile = stats.isFile();\n\t\t\t\t} catch {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tconst relPath = toPosixPath(relative(dir, fullPath));\n\t\t\tconst ignorePath = isDir ? `${relPath}/` : relPath;\n\t\t\tif (ig.ignores(ignorePath)) continue;\n\n\t\t\tif (isFile && (entry.name.endsWith(\".ts\") || entry.name.endsWith(\".js\"))) {\n\t\t\t\tentries.push(fullPath);\n\t\t\t} else if (isDir) {\n\t\t\t\tconst resolvedEntries = resolveExtensionEntries(fullPath);\n\t\t\t\tif (resolvedEntries) {\n\t\t\t\t\tentries.push(...resolvedEntries);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t} catch {\n\t\t// Ignore errors\n\t}\n\n\treturn entries;\n}\n\n/**\n * Collect resource files from a directory based on resource type.\n * Extensions use smart discovery (index.ts in subdirs), others use recursive collection.\n */\nfunction collectResourceFiles(dir: string, resourceType: ResourceType): string[] {\n\tif (resourceType === \"skills\") {\n\t\treturn collectSkillEntries(dir, \"aery\");\n\t}\n\tif (resourceType === \"extensions\") {\n\t\treturn collectAutoExtensionEntries(dir);\n\t}\n\treturn collectFiles(dir, FILE_PATTERNS[resourceType]);\n}\n\nfunction matchesAnyPattern(filePath: string, patterns: string[], baseDir: string): boolean {\n\tconst rel = toPosixPath(relative(baseDir, filePath));\n\tconst name = basename(filePath);\n\tconst filePathPosix = toPosixPath(filePath);\n\tconst isSkillFile = name === \"SKILL.md\";\n\tconst parentDir = isSkillFile ? dirname(filePath) : undefined;\n\tconst parentRel = isSkillFile ? toPosixPath(relative(baseDir, parentDir!)) : undefined;\n\tconst parentName = isSkillFile ? basename(parentDir!) : undefined;\n\tconst parentDirPosix = isSkillFile ? toPosixPath(parentDir!) : undefined;\n\n\treturn patterns.some((pattern) => {\n\t\tconst normalizedPattern = toPosixPath(pattern);\n\t\tif (\n\t\t\tminimatch(rel, normalizedPattern) ||\n\t\t\tminimatch(name, normalizedPattern) ||\n\t\t\tminimatch(filePathPosix, normalizedPattern)\n\t\t) {\n\t\t\treturn true;\n\t\t}\n\t\tif (!isSkillFile) return false;\n\t\treturn (\n\t\t\tminimatch(parentRel!, normalizedPattern) ||\n\t\t\tminimatch(parentName!, normalizedPattern) ||\n\t\t\tminimatch(parentDirPosix!, normalizedPattern)\n\t\t);\n\t});\n}\n\nfunction normalizeExactPattern(pattern: string): string {\n\tconst normalized = pattern.startsWith(\"./\") || pattern.startsWith(\".\\\\\") ? pattern.slice(2) : pattern;\n\treturn toPosixPath(normalized);\n}\n\nfunction matchesAnyExactPattern(filePath: string, patterns: string[], baseDir: string): boolean {\n\tif (patterns.length === 0) return false;\n\tconst rel = toPosixPath(relative(baseDir, filePath));\n\tconst name = basename(filePath);\n\tconst filePathPosix = toPosixPath(filePath);\n\tconst isSkillFile = name === \"SKILL.md\";\n\tconst parentDir = isSkillFile ? dirname(filePath) : undefined;\n\tconst parentRel = isSkillFile ? toPosixPath(relative(baseDir, parentDir!)) : undefined;\n\tconst parentDirPosix = isSkillFile ? toPosixPath(parentDir!) : undefined;\n\n\treturn patterns.some((pattern) => {\n\t\tconst normalized = normalizeExactPattern(pattern);\n\t\tif (normalized === rel || normalized === filePathPosix) {\n\t\t\treturn true;\n\t\t}\n\t\tif (!isSkillFile) return false;\n\t\treturn normalized === parentRel || normalized === parentDirPosix;\n\t});\n}\n\nfunction getOverridePatterns(entries: string[]): string[] {\n\treturn entries.filter((pattern) => pattern.startsWith(\"!\") || pattern.startsWith(\"+\") || pattern.startsWith(\"-\"));\n}\n\nfunction isEnabledByOverrides(filePath: string, patterns: string[], baseDir: string): boolean {\n\tconst overrides = getOverridePatterns(patterns);\n\tconst excludes = overrides.filter((pattern) => pattern.startsWith(\"!\")).map((pattern) => pattern.slice(1));\n\tconst forceIncludes = overrides.filter((pattern) => pattern.startsWith(\"+\")).map((pattern) => pattern.slice(1));\n\tconst forceExcludes = overrides.filter((pattern) => pattern.startsWith(\"-\")).map((pattern) => pattern.slice(1));\n\n\tlet enabled = true;\n\tif (excludes.length > 0 && matchesAnyPattern(filePath, excludes, baseDir)) {\n\t\tenabled = false;\n\t}\n\tif (forceIncludes.length > 0 && matchesAnyExactPattern(filePath, forceIncludes, baseDir)) {\n\t\tenabled = true;\n\t}\n\tif (forceExcludes.length > 0 && matchesAnyExactPattern(filePath, forceExcludes, baseDir)) {\n\t\tenabled = false;\n\t}\n\treturn enabled;\n}\n\n/**\n * Apply patterns to paths and return a Set of enabled paths.\n * Pattern types:\n * - Plain patterns: include matching paths\n * - `!pattern`: exclude matching paths\n * - `+path`: force-include exact path (overrides exclusions)\n * - `-path`: force-exclude exact path (overrides force-includes)\n */\nfunction applyPatterns(allPaths: string[], patterns: string[], baseDir: string): Set<string> {\n\tconst includes: string[] = [];\n\tconst excludes: string[] = [];\n\tconst forceIncludes: string[] = [];\n\tconst forceExcludes: string[] = [];\n\n\tfor (const p of patterns) {\n\t\tif (p.startsWith(\"+\")) {\n\t\t\tforceIncludes.push(p.slice(1));\n\t\t} else if (p.startsWith(\"-\")) {\n\t\t\tforceExcludes.push(p.slice(1));\n\t\t} else if (p.startsWith(\"!\")) {\n\t\t\texcludes.push(p.slice(1));\n\t\t} else {\n\t\t\tincludes.push(p);\n\t\t}\n\t}\n\n\t// Step 1: Apply includes (or all if no includes)\n\tlet result: string[];\n\tif (includes.length === 0) {\n\t\tresult = [...allPaths];\n\t} else {\n\t\tresult = allPaths.filter((filePath) => matchesAnyPattern(filePath, includes, baseDir));\n\t}\n\n\t// Step 2: Apply excludes\n\tif (excludes.length > 0) {\n\t\tresult = result.filter((filePath) => !matchesAnyPattern(filePath, excludes, baseDir));\n\t}\n\n\t// Step 3: Force-include (add back from allPaths, overriding exclusions)\n\tif (forceIncludes.length > 0) {\n\t\tfor (const filePath of allPaths) {\n\t\t\tif (!result.includes(filePath) && matchesAnyExactPattern(filePath, forceIncludes, baseDir)) {\n\t\t\t\tresult.push(filePath);\n\t\t\t}\n\t\t}\n\t}\n\n\t// Step 4: Force-exclude (remove even if included or force-included)\n\tif (forceExcludes.length > 0) {\n\t\tresult = result.filter((filePath) => !matchesAnyExactPattern(filePath, forceExcludes, baseDir));\n\t}\n\n\treturn new Set(result);\n}\n\nexport class DefaultPackageManager implements PackageManager {\n\tprivate cwd: string;\n\tprivate agentDir: string;\n\tprivate settingsManager: SettingsManager;\n\tprivate globalNpmRoot: string | undefined;\n\tprivate globalNpmRootCommandKey: string | undefined;\n\tprivate progressCallback: ProgressCallback | undefined;\n\n\tconstructor(options: PackageManagerOptions) {\n\t\tthis.cwd = options.cwd;\n\t\tthis.agentDir = options.agentDir;\n\t\tthis.settingsManager = options.settingsManager;\n\t}\n\n\tsetProgressCallback(callback: ProgressCallback | undefined): void {\n\t\tthis.progressCallback = callback;\n\t}\n\n\taddSourceToSettings(source: string, options?: { local?: boolean }): boolean {\n\t\tconst scope: SourceScope = options?.local ? \"project\" : \"user\";\n\t\tconst currentSettings =\n\t\t\tscope === \"project\" ? this.settingsManager.getProjectSettings() : this.settingsManager.getGlobalSettings();\n\t\tconst currentPackages = currentSettings.packages ?? [];\n\t\tconst normalizedSource = this.normalizePackageSourceForSettings(source, scope);\n\t\tconst exists = currentPackages.some((existing) => this.packageSourcesMatch(existing, source, scope));\n\t\tif (exists) {\n\t\t\treturn false;\n\t\t}\n\t\tconst nextPackages = [...currentPackages, normalizedSource];\n\t\tif (scope === \"project\") {\n\t\t\tthis.settingsManager.setProjectPackages(nextPackages);\n\t\t} else {\n\t\t\tthis.settingsManager.setPackages(nextPackages);\n\t\t}\n\t\treturn true;\n\t}\n\n\tremoveSourceFromSettings(source: string, options?: { local?: boolean }): boolean {\n\t\tconst scope: SourceScope = options?.local ? \"project\" : \"user\";\n\t\tconst currentSettings =\n\t\t\tscope === \"project\" ? this.settingsManager.getProjectSettings() : this.settingsManager.getGlobalSettings();\n\t\tconst currentPackages = currentSettings.packages ?? [];\n\t\tconst nextPackages = currentPackages.filter((existing) => !this.packageSourcesMatch(existing, source, scope));\n\t\tconst changed = nextPackages.length !== currentPackages.length;\n\t\tif (!changed) {\n\t\t\treturn false;\n\t\t}\n\t\tif (scope === \"project\") {\n\t\t\tthis.settingsManager.setProjectPackages(nextPackages);\n\t\t} else {\n\t\t\tthis.settingsManager.setPackages(nextPackages);\n\t\t}\n\t\treturn true;\n\t}\n\n\tgetInstalledPath(source: string, scope: \"user\" | \"project\"): string | undefined {\n\t\tconst parsed = this.parseSource(source);\n\t\tif (parsed.type === \"npm\") {\n\t\t\tconst path = this.getNpmInstallPath(parsed, scope);\n\t\t\treturn existsSync(path) ? path : undefined;\n\t\t}\n\t\tif (parsed.type === \"git\") {\n\t\t\tconst path = this.getGitInstallPath(parsed, scope);\n\t\t\treturn existsSync(path) ? path : undefined;\n\t\t}\n\t\tif (parsed.type === \"local\") {\n\t\t\tconst baseDir = this.getBaseDirForScope(scope);\n\t\t\tconst path = this.resolvePathFromBase(parsed.path, baseDir);\n\t\t\treturn existsSync(path) ? path : undefined;\n\t\t}\n\t\treturn undefined;\n\t}\n\n\tprivate emitProgress(event: ProgressEvent): void {\n\t\tthis.progressCallback?.(event);\n\t}\n\n\tprivate async withProgress(\n\t\taction: ProgressEvent[\"action\"],\n\t\tsource: string,\n\t\tmessage: string,\n\t\toperation: () => Promise<void>,\n\t): Promise<void> {\n\t\tthis.emitProgress({ type: \"start\", action, source, message });\n\t\ttry {\n\t\t\tawait operation();\n\t\t\tthis.emitProgress({ type: \"complete\", action, source });\n\t\t} catch (error) {\n\t\t\tconst errorMessage = error instanceof Error ? error.message : String(error);\n\t\t\tthis.emitProgress({ type: \"error\", action, source, message: errorMessage });\n\t\t\tthrow error;\n\t\t}\n\t}\n\n\tasync resolve(onMissing?: (source: string) => Promise<MissingSourceAction>): Promise<ResolvedPaths> {\n\t\tconst accumulator = this.createAccumulator();\n\t\tconst globalSettings = this.settingsManager.getGlobalSettings();\n\t\tconst projectSettings = this.settingsManager.getProjectSettings();\n\n\t\t// Collect all packages with scope (project first so cwd resources win collisions)\n\t\tconst allPackages: Array<{ pkg: PackageSource; scope: SourceScope }> = [];\n\t\tfor (const pkg of projectSettings.packages ?? []) {\n\t\t\tallPackages.push({ pkg, scope: \"project\" });\n\t\t}\n\t\tfor (const pkg of globalSettings.packages ?? []) {\n\t\t\tallPackages.push({ pkg, scope: \"user\" });\n\t\t}\n\n\t\t// Dedupe: project scope wins over global for same package identity\n\t\tconst packageSources = this.dedupePackages(allPackages);\n\t\tawait this.resolvePackageSources(packageSources, accumulator, onMissing);\n\n\t\tconst globalBaseDir = this.agentDir;\n\t\tconst projectBaseDir = join(this.cwd, CONFIG_DIR_NAME);\n\n\t\tfor (const resourceType of RESOURCE_TYPES) {\n\t\t\tconst target = this.getTargetMap(accumulator, resourceType);\n\t\t\tconst globalEntries = (globalSettings[resourceType] ?? []) as string[];\n\t\t\tconst projectEntries = (projectSettings[resourceType] ?? []) as string[];\n\t\t\tthis.resolveLocalEntries(\n\t\t\t\tprojectEntries,\n\t\t\t\tresourceType,\n\t\t\t\ttarget,\n\t\t\t\t{\n\t\t\t\t\tsource: \"local\",\n\t\t\t\t\tscope: \"project\",\n\t\t\t\t\torigin: \"top-level\",\n\t\t\t\t},\n\t\t\t\tprojectBaseDir,\n\t\t\t);\n\t\t\tthis.resolveLocalEntries(\n\t\t\t\tglobalEntries,\n\t\t\t\tresourceType,\n\t\t\t\ttarget,\n\t\t\t\t{\n\t\t\t\t\tsource: \"local\",\n\t\t\t\t\tscope: \"user\",\n\t\t\t\t\torigin: \"top-level\",\n\t\t\t\t},\n\t\t\t\tglobalBaseDir,\n\t\t\t);\n\t\t}\n\n\t\tthis.addAutoDiscoveredResources(accumulator, globalSettings, projectSettings, globalBaseDir, projectBaseDir);\n\n\t\treturn this.toResolvedPaths(accumulator);\n\t}\n\n\tasync resolveExtensionSources(\n\t\tsources: string[],\n\t\toptions?: { local?: boolean; temporary?: boolean },\n\t): Promise<ResolvedPaths> {\n\t\tconst accumulator = this.createAccumulator();\n\t\tconst scope: SourceScope = options?.temporary ? \"temporary\" : options?.local ? \"project\" : \"user\";\n\t\tconst packageSources = sources.map((source) => ({ pkg: source as PackageSource, scope }));\n\t\tawait this.resolvePackageSources(packageSources, accumulator);\n\t\treturn this.toResolvedPaths(accumulator);\n\t}\n\n\tlistConfiguredPackages(): ConfiguredPackage[] {\n\t\tconst globalSettings = this.settingsManager.getGlobalSettings();\n\t\tconst projectSettings = this.settingsManager.getProjectSettings();\n\t\tconst configuredPackages: ConfiguredPackage[] = [];\n\n\t\tfor (const pkg of globalSettings.packages ?? []) {\n\t\t\tconst source = typeof pkg === \"string\" ? pkg : pkg.source;\n\t\t\tconfiguredPackages.push({\n\t\t\t\tsource,\n\t\t\t\tscope: \"user\",\n\t\t\t\tfiltered: typeof pkg === \"object\",\n\t\t\t\tinstalledPath: this.getInstalledPath(source, \"user\"),\n\t\t\t});\n\t\t}\n\n\t\tfor (const pkg of projectSettings.packages ?? []) {\n\t\t\tconst source = typeof pkg === \"string\" ? pkg : pkg.source;\n\t\t\tconfiguredPackages.push({\n\t\t\t\tsource,\n\t\t\t\tscope: \"project\",\n\t\t\t\tfiltered: typeof pkg === \"object\",\n\t\t\t\tinstalledPath: this.getInstalledPath(source, \"project\"),\n\t\t\t});\n\t\t}\n\n\t\treturn configuredPackages;\n\t}\n\n\tasync install(source: string, options?: { local?: boolean }): Promise<void> {\n\t\tconst parsed = this.parseSource(source);\n\t\tconst scope: SourceScope = options?.local ? \"project\" : \"user\";\n\t\tawait this.withProgress(\"install\", source, `Installing ${source}...`, async () => {\n\t\t\tif (parsed.type === \"npm\") {\n\t\t\t\tawait this.installNpm(parsed, scope, false);\n\t\t\t\treturn;\n\t\t\t}\n\t\t\tif (parsed.type === \"git\") {\n\t\t\t\tawait this.installGit(parsed, scope);\n\t\t\t\treturn;\n\t\t\t}\n\t\t\tif (parsed.type === \"local\") {\n\t\t\t\tconst resolved = this.resolvePath(parsed.path);\n\t\t\t\tif (!existsSync(resolved)) {\n\t\t\t\t\tthrow new Error(`Path does not exist: ${resolved}`);\n\t\t\t\t}\n\t\t\t\treturn;\n\t\t\t}\n\t\t\tthrow new Error(`Unsupported install source: ${source}`);\n\t\t});\n\t}\n\n\tasync installAndPersist(source: string, options?: { local?: boolean }): Promise<void> {\n\t\tawait this.install(source, options);\n\t\tthis.addSourceToSettings(source, options);\n\t}\n\n\tasync remove(source: string, options?: { local?: boolean }): Promise<void> {\n\t\tconst parsed = this.parseSource(source);\n\t\tconst scope: SourceScope = options?.local ? \"project\" : \"user\";\n\t\tawait this.withProgress(\"remove\", source, `Removing ${source}...`, async () => {\n\t\t\tif (parsed.type === \"npm\") {\n\t\t\t\tawait this.uninstallNpm(parsed, scope);\n\t\t\t\treturn;\n\t\t\t}\n\t\t\tif (parsed.type === \"git\") {\n\t\t\t\tawait this.removeGit(parsed, scope);\n\t\t\t\treturn;\n\t\t\t}\n\t\t\tif (parsed.type === \"local\") {\n\t\t\t\treturn;\n\t\t\t}\n\t\t\tthrow new Error(`Unsupported remove source: ${source}`);\n\t\t});\n\t}\n\n\tasync removeAndPersist(source: string, options?: { local?: boolean }): Promise<boolean> {\n\t\tawait this.remove(source, options);\n\t\treturn this.removeSourceFromSettings(source, options);\n\t}\n\n\tasync update(source?: string): Promise<void> {\n\t\tconst globalSettings = this.settingsManager.getGlobalSettings();\n\t\tconst projectSettings = this.settingsManager.getProjectSettings();\n\t\tconst identity = source ? this.getPackageIdentity(source) : undefined;\n\t\tlet matched = false;\n\t\tconst updateSources: ConfiguredUpdateSource[] = [];\n\n\t\tfor (const pkg of globalSettings.packages ?? []) {\n\t\t\tconst sourceStr = typeof pkg === \"string\" ? pkg : pkg.source;\n\t\t\tif (identity && this.getPackageIdentity(sourceStr, \"user\") !== identity) continue;\n\t\t\tmatched = true;\n\t\t\tupdateSources.push({ source: sourceStr, scope: \"user\" });\n\t\t}\n\t\tfor (const pkg of projectSettings.packages ?? []) {\n\t\t\tconst sourceStr = typeof pkg === \"string\" ? pkg : pkg.source;\n\t\t\tif (identity && this.getPackageIdentity(sourceStr, \"project\") !== identity) continue;\n\t\t\tmatched = true;\n\t\t\tupdateSources.push({ source: sourceStr, scope: \"project\" });\n\t\t}\n\n\t\tif (source && !matched) {\n\t\t\tthrow new Error(\n\t\t\t\tthis.buildNoMatchingPackageMessage(source, [\n\t\t\t\t\t...(globalSettings.packages ?? []),\n\t\t\t\t\t...(projectSettings.packages ?? []),\n\t\t\t\t]),\n\t\t\t);\n\t\t}\n\n\t\tawait this.updateConfiguredSources(updateSources);\n\t}\n\n\tprivate async updateConfiguredSources(sources: ConfiguredUpdateSource[]): Promise<void> {\n\t\tif (isOfflineModeEnabled() || sources.length === 0) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst npmCandidates: NpmUpdateTarget[] = [];\n\t\tconst gitCandidates: GitUpdateTarget[] = [];\n\n\t\tfor (const entry of sources) {\n\t\t\tconst parsed = this.parseSource(entry.source);\n\t\t\tif (parsed.type === \"local\" || parsed.pinned) {\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tif (parsed.type === \"npm\") {\n\t\t\t\tnpmCandidates.push({ ...entry, parsed });\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tgitCandidates.push({ ...entry, parsed });\n\t\t}\n\n\t\tconst npmCheckTasks = npmCandidates.map((entry) => async () => ({\n\t\t\tentry,\n\t\t\tshouldUpdate: await this.shouldUpdateNpmSource(entry.parsed, entry.scope),\n\t\t}));\n\t\tconst npmCheckResults = await this.runWithConcurrency(npmCheckTasks, UPDATE_CHECK_CONCURRENCY);\n\t\tconst userNpmUpdates: NpmUpdateTarget[] = [];\n\t\tconst projectNpmUpdates: NpmUpdateTarget[] = [];\n\t\tfor (const result of npmCheckResults) {\n\t\t\tif (!result.shouldUpdate) {\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tif (result.entry.scope === \"user\") {\n\t\t\t\tuserNpmUpdates.push(result.entry);\n\t\t\t} else {\n\t\t\t\tprojectNpmUpdates.push(result.entry);\n\t\t\t}\n\t\t}\n\n\t\tconst tasks: Promise<void>[] = [];\n\t\tif (userNpmUpdates.length > 0) {\n\t\t\ttasks.push(this.updateNpmBatch(userNpmUpdates, \"user\"));\n\t\t}\n\t\tif (projectNpmUpdates.length > 0) {\n\t\t\ttasks.push(this.updateNpmBatch(projectNpmUpdates, \"project\"));\n\t\t}\n\t\tif (gitCandidates.length > 0) {\n\t\t\tconst gitTasks = gitCandidates.map(\n\t\t\t\t(entry) => async () =>\n\t\t\t\t\tthis.withProgress(\"update\", entry.source, `Updating ${entry.source}...`, async () => {\n\t\t\t\t\t\tawait this.updateGit(entry.parsed, entry.scope);\n\t\t\t\t\t}),\n\t\t\t);\n\t\t\ttasks.push(this.runWithConcurrency(gitTasks, GIT_UPDATE_CONCURRENCY).then(() => {}));\n\t\t}\n\n\t\tawait Promise.all(tasks);\n\t}\n\n\tprivate async shouldUpdateNpmSource(source: NpmSource, scope: InstalledSourceScope): Promise<boolean> {\n\t\tconst installedPath = this.getNpmInstallPath(source, scope);\n\t\tconst installedVersion = existsSync(installedPath) ? this.getInstalledNpmVersion(installedPath) : undefined;\n\t\tif (!installedVersion) {\n\t\t\treturn true;\n\t\t}\n\n\t\ttry {\n\t\t\tconst latestVersion = await this.getLatestNpmVersion(source.name);\n\t\t\treturn latestVersion !== installedVersion;\n\t\t} catch {\n\t\t\t// Preserve existing update behavior when version lookup fails.\n\t\t\treturn true;\n\t\t}\n\t}\n\n\tprivate async updateNpmBatch(sources: NpmUpdateTarget[], scope: InstalledSourceScope): Promise<void> {\n\t\tif (sources.length === 0) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst sourceLabel = sources.length === 1 ? sources[0].source : `${scope} npm packages`;\n\t\tconst message = sources.length === 1 ? `Updating ${sources[0].source}...` : `Updating ${scope} npm packages...`;\n\t\tconst specs = sources.map((entry) => `${entry.parsed.name}@latest`);\n\n\t\tawait this.withProgress(\"update\", sourceLabel, message, async () => {\n\t\t\tawait this.installNpmBatch(specs, scope);\n\t\t});\n\t}\n\n\tprivate async installNpmBatch(specs: string[], scope: InstalledSourceScope): Promise<void> {\n\t\tif (scope === \"user\") {\n\t\t\tawait this.runNpmCommand([\"install\", \"-g\", ...specs]);\n\t\t\treturn;\n\t\t}\n\t\tconst installRoot = this.getNpmInstallRoot(scope, false);\n\t\tthis.ensureNpmProject(installRoot);\n\t\tawait this.runNpmCommand([\"install\", ...specs, \"--prefix\", installRoot]);\n\t}\n\n\tasync checkForAvailableUpdates(): Promise<PackageUpdate[]> {\n\t\tif (isOfflineModeEnabled()) {\n\t\t\treturn [];\n\t\t}\n\n\t\tconst globalSettings = this.settingsManager.getGlobalSettings();\n\t\tconst projectSettings = this.settingsManager.getProjectSettings();\n\t\tconst allPackages: Array<{ pkg: PackageSource; scope: SourceScope }> = [];\n\t\tfor (const pkg of projectSettings.packages ?? []) {\n\t\t\tallPackages.push({ pkg, scope: \"project\" });\n\t\t}\n\t\tfor (const pkg of globalSettings.packages ?? []) {\n\t\t\tallPackages.push({ pkg, scope: \"user\" });\n\t\t}\n\n\t\tconst packageSources = this.dedupePackages(allPackages);\n\t\tconst checks = packageSources\n\t\t\t.filter(\n\t\t\t\t(entry): entry is { pkg: PackageSource; scope: Exclude<SourceScope, \"temporary\"> } =>\n\t\t\t\t\tentry.scope !== \"temporary\",\n\t\t\t)\n\t\t\t.map((entry) => async (): Promise<PackageUpdate | undefined> => {\n\t\t\t\tconst source = typeof entry.pkg === \"string\" ? entry.pkg : entry.pkg.source;\n\t\t\t\tconst parsed = this.parseSource(source);\n\t\t\t\tif (parsed.type === \"local\" || parsed.pinned) {\n\t\t\t\t\treturn undefined;\n\t\t\t\t}\n\n\t\t\t\tif (parsed.type === \"npm\") {\n\t\t\t\t\tconst installedPath = this.getNpmInstallPath(parsed, entry.scope);\n\t\t\t\t\tif (!existsSync(installedPath)) {\n\t\t\t\t\t\treturn undefined;\n\t\t\t\t\t}\n\t\t\t\t\tconst hasUpdate = await this.npmHasAvailableUpdate(parsed, installedPath);\n\t\t\t\t\tif (!hasUpdate) {\n\t\t\t\t\t\treturn undefined;\n\t\t\t\t\t}\n\t\t\t\t\treturn {\n\t\t\t\t\t\tsource,\n\t\t\t\t\t\tdisplayName: parsed.name,\n\t\t\t\t\t\ttype: \"npm\",\n\t\t\t\t\t\tscope: entry.scope,\n\t\t\t\t\t};\n\t\t\t\t}\n\n\t\t\t\tconst installedPath = this.getGitInstallPath(parsed, entry.scope);\n\t\t\t\tif (!existsSync(installedPath)) {\n\t\t\t\t\treturn undefined;\n\t\t\t\t}\n\t\t\t\tconst hasUpdate = await this.gitHasAvailableUpdate(installedPath);\n\t\t\t\tif (!hasUpdate) {\n\t\t\t\t\treturn undefined;\n\t\t\t\t}\n\t\t\t\treturn {\n\t\t\t\t\tsource,\n\t\t\t\t\tdisplayName: `${parsed.host}/${parsed.path}`,\n\t\t\t\t\ttype: \"git\",\n\t\t\t\t\tscope: entry.scope,\n\t\t\t\t};\n\t\t\t});\n\n\t\tconst results = await this.runWithConcurrency(checks, UPDATE_CHECK_CONCURRENCY);\n\t\treturn results.filter((result): result is PackageUpdate => result !== undefined);\n\t}\n\n\tprivate async resolvePackageSources(\n\t\tsources: Array<{ pkg: PackageSource; scope: SourceScope }>,\n\t\taccumulator: ResourceAccumulator,\n\t\tonMissing?: (source: string) => Promise<MissingSourceAction>,\n\t): Promise<void> {\n\t\tfor (const { pkg, scope } of sources) {\n\t\t\tconst sourceStr = typeof pkg === \"string\" ? pkg : pkg.source;\n\t\t\tconst filter = typeof pkg === \"object\" ? pkg : undefined;\n\t\t\tconst parsed = this.parseSource(sourceStr);\n\t\t\tconst metadata: PathMetadata = { source: sourceStr, scope, origin: \"package\" };\n\n\t\t\tif (parsed.type === \"local\") {\n\t\t\t\tconst baseDir = this.getBaseDirForScope(scope);\n\t\t\t\tthis.resolveLocalExtensionSource(parsed, accumulator, filter, metadata, baseDir);\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\tconst installMissing = async (): Promise<boolean> => {\n\t\t\t\tif (isOfflineModeEnabled()) {\n\t\t\t\t\treturn false;\n\t\t\t\t}\n\t\t\t\tif (!onMissing) {\n\t\t\t\t\tawait this.installParsedSource(parsed, scope);\n\t\t\t\t\treturn true;\n\t\t\t\t}\n\t\t\t\tconst action = await onMissing(sourceStr);\n\t\t\t\tif (action === \"skip\") return false;\n\t\t\t\tif (action === \"error\") throw new Error(`Missing source: ${sourceStr}`);\n\t\t\t\tawait this.installParsedSource(parsed, scope);\n\t\t\t\treturn true;\n\t\t\t};\n\n\t\t\tif (parsed.type === \"npm\") {\n\t\t\t\tconst installedPath = this.getNpmInstallPath(parsed, scope);\n\t\t\t\tconst needsInstall =\n\t\t\t\t\t!existsSync(installedPath) ||\n\t\t\t\t\t(parsed.pinned && !(await this.installedNpmMatchesPinnedVersion(parsed, installedPath)));\n\t\t\t\tif (needsInstall) {\n\t\t\t\t\tconst installed = await installMissing();\n\t\t\t\t\tif (!installed) continue;\n\t\t\t\t}\n\t\t\t\tmetadata.baseDir = installedPath;\n\t\t\t\tthis.collectPackageResources(installedPath, accumulator, filter, metadata);\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\tif (parsed.type === \"git\") {\n\t\t\t\tconst installedPath = this.getGitInstallPath(parsed, scope);\n\t\t\t\tif (!existsSync(installedPath)) {\n\t\t\t\t\tconst installed = await installMissing();\n\t\t\t\t\tif (!installed) continue;\n\t\t\t\t} else if (scope === \"temporary\" && !parsed.pinned && !isOfflineModeEnabled()) {\n\t\t\t\t\tawait this.refreshTemporaryGitSource(parsed, sourceStr);\n\t\t\t\t}\n\t\t\t\tmetadata.baseDir = installedPath;\n\t\t\t\tthis.collectPackageResources(installedPath, accumulator, filter, metadata);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate resolveLocalExtensionSource(\n\t\tsource: LocalSource,\n\t\taccumulator: ResourceAccumulator,\n\t\tfilter: PackageFilter | undefined,\n\t\tmetadata: PathMetadata,\n\t\tbaseDir: string,\n\t): void {\n\t\tconst resolved = this.resolvePathFromBase(source.path, baseDir);\n\t\tif (!existsSync(resolved)) {\n\t\t\treturn;\n\t\t}\n\n\t\ttry {\n\t\t\tconst stats = statSync(resolved);\n\t\t\tif (stats.isFile()) {\n\t\t\t\tmetadata.baseDir = dirname(resolved);\n\t\t\t\tthis.addResource(accumulator.extensions, resolved, metadata, true);\n\t\t\t\treturn;\n\t\t\t}\n\t\t\tif (stats.isDirectory()) {\n\t\t\t\tmetadata.baseDir = resolved;\n\t\t\t\tconst resources = this.collectPackageResources(resolved, accumulator, filter, metadata);\n\t\t\t\tif (!resources) {\n\t\t\t\t\tthis.addResource(accumulator.extensions, resolved, metadata, true);\n\t\t\t\t}\n\t\t\t}\n\t\t} catch {\n\t\t\treturn;\n\t\t}\n\t}\n\n\tprivate async installParsedSource(parsed: ParsedSource, scope: SourceScope): Promise<void> {\n\t\tif (parsed.type === \"npm\") {\n\t\t\tawait this.installNpm(parsed, scope, scope === \"temporary\");\n\t\t\treturn;\n\t\t}\n\t\tif (parsed.type === \"git\") {\n\t\t\tawait this.installGit(parsed, scope);\n\t\t\treturn;\n\t\t}\n\t}\n\n\tprivate getPackageSourceString(pkg: PackageSource): string {\n\t\treturn typeof pkg === \"string\" ? pkg : pkg.source;\n\t}\n\n\tprivate getSourceMatchKeyForInput(source: string): string {\n\t\tconst parsed = this.parseSource(source);\n\t\tif (parsed.type === \"npm\") {\n\t\t\treturn `npm:${parsed.name}`;\n\t\t}\n\t\tif (parsed.type === \"git\") {\n\t\t\treturn `git:${parsed.host}/${parsed.path}`;\n\t\t}\n\t\treturn `local:${this.resolvePath(parsed.path)}`;\n\t}\n\n\tprivate getSourceMatchKeyForSettings(source: string, scope: SourceScope): string {\n\t\tconst parsed = this.parseSource(source);\n\t\tif (parsed.type === \"npm\") {\n\t\t\treturn `npm:${parsed.name}`;\n\t\t}\n\t\tif (parsed.type === \"git\") {\n\t\t\treturn `git:${parsed.host}/${parsed.path}`;\n\t\t}\n\t\tconst baseDir = this.getBaseDirForScope(scope);\n\t\treturn `local:${this.resolvePathFromBase(parsed.path, baseDir)}`;\n\t}\n\n\tprivate buildNoMatchingPackageMessage(source: string, configuredPackages: PackageSource[]): string {\n\t\tconst suggestion = this.findSuggestedConfiguredSource(source, configuredPackages);\n\t\tif (!suggestion) {\n\t\t\treturn `No matching package found for ${source}`;\n\t\t}\n\t\treturn `No matching package found for ${source}. Did you mean ${suggestion}?`;\n\t}\n\n\tprivate findSuggestedConfiguredSource(source: string, configuredPackages: PackageSource[]): string | undefined {\n\t\tconst trimmedSource = source.trim();\n\t\tconst suggestions = new Set<string>();\n\n\t\tfor (const pkg of configuredPackages) {\n\t\t\tconst sourceStr = this.getPackageSourceString(pkg);\n\t\t\tconst parsed = this.parseSource(sourceStr);\n\t\t\tif (parsed.type === \"npm\") {\n\t\t\t\tif (trimmedSource === parsed.name || trimmedSource === parsed.spec) {\n\t\t\t\t\tsuggestions.add(sourceStr);\n\t\t\t\t}\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tif (parsed.type === \"git\") {\n\t\t\t\tconst shorthand = `${parsed.host}/${parsed.path}`;\n\t\t\t\tconst shorthandWithRef = parsed.ref ? `${shorthand}@${parsed.ref}` : undefined;\n\t\t\t\tif (trimmedSource === shorthand || (shorthandWithRef && trimmedSource === shorthandWithRef)) {\n\t\t\t\t\tsuggestions.add(sourceStr);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn suggestions.values().next().value;\n\t}\n\n\tprivate packageSourcesMatch(existing: PackageSource, inputSource: string, scope: SourceScope): boolean {\n\t\tconst left = this.getSourceMatchKeyForSettings(this.getPackageSourceString(existing), scope);\n\t\tconst right = this.getSourceMatchKeyForInput(inputSource);\n\t\treturn left === right;\n\t}\n\n\tprivate normalizePackageSourceForSettings(source: string, scope: SourceScope): string {\n\t\tconst parsed = this.parseSource(source);\n\t\tif (parsed.type !== \"local\") {\n\t\t\treturn source;\n\t\t}\n\t\tconst baseDir = this.getBaseDirForScope(scope);\n\t\tconst resolved = this.resolvePath(parsed.path);\n\t\tconst rel = relative(baseDir, resolved);\n\t\treturn rel || \".\";\n\t}\n\n\tprivate parseSource(source: string): ParsedSource {\n\t\tif (source.startsWith(\"npm:\")) {\n\t\t\tconst spec = source.slice(\"npm:\".length).trim();\n\t\t\tconst { name, version } = this.parseNpmSpec(spec);\n\t\t\treturn {\n\t\t\t\ttype: \"npm\",\n\t\t\t\tspec,\n\t\t\t\tname,\n\t\t\t\tpinned: Boolean(version),\n\t\t\t};\n\t\t}\n\n\t\tif (isLocalPath(source)) {\n\t\t\treturn { type: \"local\", path: source };\n\t\t}\n\n\t\t// Try parsing as git URL\n\t\tconst gitParsed = parseGitUrl(source);\n\t\tif (gitParsed) {\n\t\t\treturn gitParsed;\n\t\t}\n\n\t\treturn { type: \"local\", path: source };\n\t}\n\n\tprivate async installedNpmMatchesPinnedVersion(source: NpmSource, installedPath: string): Promise<boolean> {\n\t\tconst installedVersion = this.getInstalledNpmVersion(installedPath);\n\t\tif (!installedVersion) {\n\t\t\treturn false;\n\t\t}\n\n\t\tconst { version: pinnedVersion } = this.parseNpmSpec(source.spec);\n\t\tif (!pinnedVersion) {\n\t\t\treturn true;\n\t\t}\n\n\t\treturn installedVersion === pinnedVersion;\n\t}\n\n\tprivate async npmHasAvailableUpdate(source: NpmSource, installedPath: string): Promise<boolean> {\n\t\tif (isOfflineModeEnabled()) {\n\t\t\treturn false;\n\t\t}\n\n\t\tconst installedVersion = this.getInstalledNpmVersion(installedPath);\n\t\tif (!installedVersion) {\n\t\t\treturn false;\n\t\t}\n\n\t\ttry {\n\t\t\tconst latestVersion = await this.getLatestNpmVersion(source.name);\n\t\t\treturn latestVersion !== installedVersion;\n\t\t} catch {\n\t\t\treturn false;\n\t\t}\n\t}\n\n\tprivate getInstalledNpmVersion(installedPath: string): string | undefined {\n\t\tconst packageJsonPath = join(installedPath, \"package.json\");\n\t\tif (!existsSync(packageJsonPath)) return undefined;\n\t\ttry {\n\t\t\tconst content = readFileSync(packageJsonPath, \"utf-8\");\n\t\t\tconst pkg = JSON.parse(content) as { version?: string };\n\t\t\treturn pkg.version;\n\t\t} catch {\n\t\t\treturn undefined;\n\t\t}\n\t}\n\n\tprivate async getLatestNpmVersion(packageName: string): Promise<string> {\n\t\tconst npmCommand = this.getNpmCommand();\n\t\tconst stdout = await this.runCommandCapture(\n\t\t\tnpmCommand.command,\n\t\t\t[...npmCommand.args, \"view\", packageName, \"version\", \"--json\"],\n\t\t\t{ cwd: this.cwd, timeoutMs: NETWORK_TIMEOUT_MS },\n\t\t);\n\t\tconst raw = stdout.trim();\n\t\tif (!raw) throw new Error(\"Empty response from npm view\");\n\t\treturn JSON.parse(raw);\n\t}\n\n\tprivate async gitHasAvailableUpdate(installedPath: string): Promise<boolean> {\n\t\tif (isOfflineModeEnabled()) {\n\t\t\treturn false;\n\t\t}\n\n\t\ttry {\n\t\t\tconst localHead = await this.runCommandCapture(\"git\", [\"rev-parse\", \"HEAD\"], {\n\t\t\t\tcwd: installedPath,\n\t\t\t\ttimeoutMs: NETWORK_TIMEOUT_MS,\n\t\t\t});\n\t\t\tconst remoteHead = await this.getRemoteGitHead(installedPath);\n\t\t\treturn localHead.trim() !== remoteHead.trim();\n\t\t} catch {\n\t\t\treturn false;\n\t\t}\n\t}\n\n\tprivate async getRemoteGitHead(installedPath: string): Promise<string> {\n\t\tconst upstreamRef = await this.getGitUpstreamRef(installedPath);\n\t\tif (upstreamRef) {\n\t\t\tconst remoteHead = await this.runGitRemoteCommand(installedPath, [\"ls-remote\", \"origin\", upstreamRef]);\n\t\t\tconst match = remoteHead.match(/^([0-9a-f]{40})\\s+/m);\n\t\t\tif (match?.[1]) {\n\t\t\t\treturn match[1];\n\t\t\t}\n\t\t}\n\n\t\tconst remoteHead = await this.runGitRemoteCommand(installedPath, [\"ls-remote\", \"origin\", \"HEAD\"]);\n\t\tconst match = remoteHead.match(/^([0-9a-f]{40})\\s+HEAD$/m);\n\t\tif (!match?.[1]) {\n\t\t\tthrow new Error(\"Failed to determine remote HEAD\");\n\t\t}\n\t\treturn match[1];\n\t}\n\n\tprivate async getLocalGitUpdateTarget(\n\t\tinstalledPath: string,\n\t): Promise<{ ref: string; head: string; fetchArgs: string[] }> {\n\t\ttry {\n\t\t\tconst upstream = await this.runCommandCapture(\"git\", [\"rev-parse\", \"--abbrev-ref\", \"@{upstream}\"], {\n\t\t\t\tcwd: installedPath,\n\t\t\t\ttimeoutMs: NETWORK_TIMEOUT_MS,\n\t\t\t});\n\t\t\tconst trimmedUpstream = upstream.trim();\n\t\t\tif (!trimmedUpstream.startsWith(\"origin/\")) {\n\t\t\t\tthrow new Error(`Unsupported upstream remote: ${trimmedUpstream}`);\n\t\t\t}\n\t\t\tconst branch = trimmedUpstream.slice(\"origin/\".length);\n\t\t\tif (!branch) {\n\t\t\t\tthrow new Error(\"Missing upstream branch name\");\n\t\t\t}\n\t\t\tconst head = await this.runCommandCapture(\"git\", [\"rev-parse\", \"@{upstream}\"], {\n\t\t\t\tcwd: installedPath,\n\t\t\t\ttimeoutMs: NETWORK_TIMEOUT_MS,\n\t\t\t});\n\t\t\treturn {\n\t\t\t\tref: \"@{upstream}\",\n\t\t\t\thead,\n\t\t\t\tfetchArgs: [\n\t\t\t\t\t\"fetch\",\n\t\t\t\t\t\"--prune\",\n\t\t\t\t\t\"--no-tags\",\n\t\t\t\t\t\"origin\",\n\t\t\t\t\t`+refs/heads/${branch}:refs/remotes/origin/${branch}`,\n\t\t\t\t],\n\t\t\t};\n\t\t} catch {\n\t\t\tawait this.runCommand(\"git\", [\"remote\", \"set-head\", \"origin\", \"-a\"], { cwd: installedPath }).catch(() => {});\n\t\t\tconst head = await this.runCommandCapture(\"git\", [\"rev-parse\", \"origin/HEAD\"], {\n\t\t\t\tcwd: installedPath,\n\t\t\t\ttimeoutMs: NETWORK_TIMEOUT_MS,\n\t\t\t});\n\t\t\tconst originHeadRef = await this.runCommandCapture(\"git\", [\"symbolic-ref\", \"refs/remotes/origin/HEAD\"], {\n\t\t\t\tcwd: installedPath,\n\t\t\t\ttimeoutMs: NETWORK_TIMEOUT_MS,\n\t\t\t}).catch(() => \"\");\n\t\t\tconst branch = originHeadRef.trim().replace(/^refs\\/remotes\\/origin\\//, \"\");\n\t\t\tif (branch) {\n\t\t\t\treturn {\n\t\t\t\t\tref: \"origin/HEAD\",\n\t\t\t\t\thead,\n\t\t\t\t\tfetchArgs: [\n\t\t\t\t\t\t\"fetch\",\n\t\t\t\t\t\t\"--prune\",\n\t\t\t\t\t\t\"--no-tags\",\n\t\t\t\t\t\t\"origin\",\n\t\t\t\t\t\t`+refs/heads/${branch}:refs/remotes/origin/${branch}`,\n\t\t\t\t\t],\n\t\t\t\t};\n\t\t\t}\n\t\t\treturn {\n\t\t\t\tref: \"origin/HEAD\",\n\t\t\t\thead,\n\t\t\t\tfetchArgs: [\"fetch\", \"--prune\", \"--no-tags\", \"origin\", \"+HEAD:refs/remotes/origin/HEAD\"],\n\t\t\t};\n\t\t}\n\t}\n\n\tprivate async getGitUpstreamRef(installedPath: string): Promise<string | undefined> {\n\t\ttry {\n\t\t\tconst upstream = await this.runCommandCapture(\"git\", [\"rev-parse\", \"--abbrev-ref\", \"@{upstream}\"], {\n\t\t\t\tcwd: installedPath,\n\t\t\t\ttimeoutMs: NETWORK_TIMEOUT_MS,\n\t\t\t});\n\t\t\tconst trimmed = upstream.trim();\n\t\t\tif (!trimmed.startsWith(\"origin/\")) {\n\t\t\t\treturn undefined;\n\t\t\t}\n\t\t\tconst branch = trimmed.slice(\"origin/\".length);\n\t\t\treturn branch ? `refs/heads/${branch}` : undefined;\n\t\t} catch {\n\t\t\treturn undefined;\n\t\t}\n\t}\n\n\tprivate runGitRemoteCommand(installedPath: string, args: string[]): Promise<string> {\n\t\treturn this.runCommandCapture(\"git\", args, {\n\t\t\tcwd: installedPath,\n\t\t\ttimeoutMs: NETWORK_TIMEOUT_MS,\n\t\t\tenv: {\n\t\t\t\tGIT_TERMINAL_PROMPT: \"0\",\n\t\t\t},\n\t\t});\n\t}\n\n\tprivate async runWithConcurrency<T>(tasks: Array<() => Promise<T>>, limit: number): Promise<T[]> {\n\t\tif (tasks.length === 0) {\n\t\t\treturn [];\n\t\t}\n\n\t\tconst results: T[] = new Array(tasks.length);\n\t\tlet nextIndex = 0;\n\t\tconst workerCount = Math.max(1, Math.min(limit, tasks.length));\n\n\t\tconst worker = async () => {\n\t\t\twhile (true) {\n\t\t\t\tconst index = nextIndex;\n\t\t\t\tnextIndex += 1;\n\t\t\t\tif (index >= tasks.length) {\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tresults[index] = await tasks[index]();\n\t\t\t}\n\t\t};\n\n\t\tawait Promise.all(Array.from({ length: workerCount }, () => worker()));\n\t\treturn results;\n\t}\n\n\t/**\n\t * Get a unique identity for a package, ignoring version/ref.\n\t * Used to detect when the same package is in both global and project settings.\n\t * For git packages, uses normalized host/path to ensure SSH and HTTPS URLs\n\t * for the same repository are treated as identical.\n\t */\n\tprivate getPackageIdentity(source: string, scope?: SourceScope): string {\n\t\tconst parsed = this.parseSource(source);\n\t\tif (parsed.type === \"npm\") {\n\t\t\treturn `npm:${parsed.name}`;\n\t\t}\n\t\tif (parsed.type === \"git\") {\n\t\t\t// Use host/path for identity to normalize SSH and HTTPS\n\t\t\treturn `git:${parsed.host}/${parsed.path}`;\n\t\t}\n\t\tif (scope) {\n\t\t\tconst baseDir = this.getBaseDirForScope(scope);\n\t\t\treturn `local:${this.resolvePathFromBase(parsed.path, baseDir)}`;\n\t\t}\n\t\treturn `local:${this.resolvePath(parsed.path)}`;\n\t}\n\n\t/**\n\t * Dedupe packages: if same package identity appears in both global and project,\n\t * keep only the project one (project wins).\n\t */\n\tprivate dedupePackages(\n\t\tpackages: Array<{ pkg: PackageSource; scope: SourceScope }>,\n\t): Array<{ pkg: PackageSource; scope: SourceScope }> {\n\t\tconst seen = new Map<string, { pkg: PackageSource; scope: SourceScope }>();\n\n\t\tfor (const entry of packages) {\n\t\t\tconst sourceStr = typeof entry.pkg === \"string\" ? entry.pkg : entry.pkg.source;\n\t\t\tconst identity = this.getPackageIdentity(sourceStr, entry.scope);\n\n\t\t\tconst existing = seen.get(identity);\n\t\t\tif (!existing) {\n\t\t\t\tseen.set(identity, entry);\n\t\t\t} else if (entry.scope === \"project\" && existing.scope === \"user\") {\n\t\t\t\t// Project wins over user\n\t\t\t\tseen.set(identity, entry);\n\t\t\t}\n\t\t\t// If existing is project and new is global, keep existing (project)\n\t\t\t// If both are same scope, keep first one\n\t\t}\n\n\t\treturn Array.from(seen.values());\n\t}\n\n\tprivate parseNpmSpec(spec: string): { name: string; version?: string } {\n\t\tconst match = spec.match(/^(@?[^@]+(?:\\/[^@]+)?)(?:@(.+))?$/);\n\t\tif (!match) {\n\t\t\treturn { name: spec };\n\t\t}\n\t\tconst name = match[1] ?? spec;\n\t\tconst version = match[2];\n\t\treturn { name, version };\n\t}\n\n\tprivate getNpmCommand(): { command: string; args: string[] } {\n\t\tconst configuredCommand = this.settingsManager.getNpmCommand();\n\t\tif (!configuredCommand || configuredCommand.length === 0) {\n\t\t\treturn { command: \"npm\", args: [] };\n\t\t}\n\t\tconst [command, ...args] = configuredCommand;\n\t\tif (!command) {\n\t\t\tthrow new Error(\"Invalid npmCommand: first array entry must be a non-empty command\");\n\t\t}\n\t\treturn { command, args };\n\t}\n\n\tprivate async runNpmCommand(args: string[], options?: { cwd?: string }): Promise<void> {\n\t\tconst npmCommand = this.getNpmCommand();\n\t\tawait this.runCommand(npmCommand.command, [...npmCommand.args, ...args], options);\n\t}\n\n\tprivate getGitDependencyInstallArgs(): string[] {\n\t\tconst configuredCommand = this.settingsManager.getNpmCommand();\n\t\tif (configuredCommand && configuredCommand.length > 0) {\n\t\t\treturn [\"install\"];\n\t\t}\n\t\treturn [\"install\", \"--omit=dev\"];\n\t}\n\n\tprivate runNpmCommandSync(args: string[]): string {\n\t\tconst npmCommand = this.getNpmCommand();\n\t\treturn this.runCommandSync(npmCommand.command, [...npmCommand.args, ...args]);\n\t}\n\n\tprivate async installNpm(source: NpmSource, scope: SourceScope, temporary: boolean): Promise<void> {\n\t\tif (scope === \"user\" && !temporary) {\n\t\t\tawait this.runNpmCommand([\"install\", \"-g\", source.spec]);\n\t\t\treturn;\n\t\t}\n\t\tconst installRoot = this.getNpmInstallRoot(scope, temporary);\n\t\tthis.ensureNpmProject(installRoot);\n\t\tawait this.runNpmCommand([\"install\", source.spec, \"--prefix\", installRoot]);\n\t}\n\n\tprivate async uninstallNpm(source: NpmSource, scope: SourceScope): Promise<void> {\n\t\tif (scope === \"user\") {\n\t\t\tawait this.runNpmCommand([\"uninstall\", \"-g\", source.name]);\n\t\t\treturn;\n\t\t}\n\t\tconst installRoot = this.getNpmInstallRoot(scope, false);\n\t\tif (!existsSync(installRoot)) {\n\t\t\treturn;\n\t\t}\n\t\tawait this.runNpmCommand([\"uninstall\", source.name, \"--prefix\", installRoot]);\n\t}\n\n\tprivate async installGit(source: GitSource, scope: SourceScope): Promise<void> {\n\t\tconst targetDir = this.getGitInstallPath(source, scope);\n\t\tif (existsSync(targetDir)) {\n\t\t\treturn;\n\t\t}\n\t\tconst gitRoot = this.getGitInstallRoot(scope);\n\t\tif (gitRoot) {\n\t\t\tthis.ensureGitIgnore(gitRoot);\n\t\t}\n\t\tmkdirSync(dirname(targetDir), { recursive: true });\n\n\t\tawait this.runCommand(\"git\", [\"clone\", source.repo, targetDir]);\n\t\tif (source.ref) {\n\t\t\tawait this.runCommand(\"git\", [\"checkout\", source.ref], { cwd: targetDir });\n\t\t}\n\t\tconst packageJsonPath = join(targetDir, \"package.json\");\n\t\tif (existsSync(packageJsonPath)) {\n\t\t\tawait this.runNpmCommand(this.getGitDependencyInstallArgs(), { cwd: targetDir });\n\t\t}\n\t}\n\n\tprivate async updateGit(source: GitSource, scope: SourceScope): Promise<void> {\n\t\tconst targetDir = this.getGitInstallPath(source, scope);\n\t\tif (!existsSync(targetDir)) {\n\t\t\tawait this.installGit(source, scope);\n\t\t\treturn;\n\t\t}\n\n\t\tconst target = await this.getLocalGitUpdateTarget(targetDir);\n\n\t\t// Fetch only the ref we will reset to, avoiding unrelated branch/tag noise.\n\t\tawait this.runCommand(\"git\", target.fetchArgs, { cwd: targetDir });\n\n\t\tconst localHead = await this.runCommandCapture(\"git\", [\"rev-parse\", \"HEAD\"], {\n\t\t\tcwd: targetDir,\n\t\t\ttimeoutMs: NETWORK_TIMEOUT_MS,\n\t\t});\n\t\tconst refreshedTargetHead = await this.runCommandCapture(\"git\", [\"rev-parse\", target.ref], {\n\t\t\tcwd: targetDir,\n\t\t\ttimeoutMs: NETWORK_TIMEOUT_MS,\n\t\t});\n\t\tif (localHead.trim() === refreshedTargetHead.trim()) {\n\t\t\treturn;\n\t\t}\n\n\t\tawait this.runCommand(\"git\", [\"reset\", \"--hard\", target.ref], { cwd: targetDir });\n\n\t\t// Clean untracked files (extensions should be pristine)\n\t\tawait this.runCommand(\"git\", [\"clean\", \"-fdx\"], { cwd: targetDir });\n\n\t\tconst packageJsonPath = join(targetDir, \"package.json\");\n\t\tif (existsSync(packageJsonPath)) {\n\t\t\tawait this.runNpmCommand(this.getGitDependencyInstallArgs(), { cwd: targetDir });\n\t\t}\n\t}\n\n\tprivate async refreshTemporaryGitSource(source: GitSource, sourceStr: string): Promise<void> {\n\t\tif (isOfflineModeEnabled()) {\n\t\t\treturn;\n\t\t}\n\t\ttry {\n\t\t\tawait this.withProgress(\"pull\", sourceStr, `Refreshing ${sourceStr}...`, async () => {\n\t\t\t\tawait this.updateGit(source, \"temporary\");\n\t\t\t});\n\t\t} catch {\n\t\t\t// Keep cached temporary checkout if refresh fails.\n\t\t}\n\t}\n\n\tprivate async removeGit(source: GitSource, scope: SourceScope): Promise<void> {\n\t\tconst targetDir = this.getGitInstallPath(source, scope);\n\t\tif (!existsSync(targetDir)) return;\n\t\trmSync(targetDir, { recursive: true, force: true });\n\t\tthis.pruneEmptyGitParents(targetDir, this.getGitInstallRoot(scope));\n\t}\n\n\tprivate pruneEmptyGitParents(targetDir: string, installRoot: string | undefined): void {\n\t\tif (!installRoot) return;\n\t\tconst resolvedRoot = resolve(installRoot);\n\t\tlet current = dirname(targetDir);\n\t\twhile (current.startsWith(resolvedRoot) && current !== resolvedRoot) {\n\t\t\tif (!existsSync(current)) {\n\t\t\t\tcurrent = dirname(current);\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tconst entries = readdirSync(current);\n\t\t\tif (entries.length > 0) {\n\t\t\t\tbreak;\n\t\t\t}\n\t\t\ttry {\n\t\t\t\trmSync(current, { recursive: true, force: true });\n\t\t\t} catch {\n\t\t\t\tbreak;\n\t\t\t}\n\t\t\tcurrent = dirname(current);\n\t\t}\n\t}\n\n\tprivate ensureNpmProject(installRoot: string): void {\n\t\tif (!existsSync(installRoot)) {\n\t\t\tmkdirSync(installRoot, { recursive: true });\n\t\t}\n\t\tthis.ensureGitIgnore(installRoot);\n\t\tconst packageJsonPath = join(installRoot, \"package.json\");\n\t\tif (!existsSync(packageJsonPath)) {\n\t\t\tconst pkgJson = { name: \"aery-extensions\", private: true };\n\t\t\twriteFileSync(packageJsonPath, JSON.stringify(pkgJson, null, 2), \"utf-8\");\n\t\t}\n\t}\n\n\tprivate ensureGitIgnore(dir: string): void {\n\t\tif (!existsSync(dir)) {\n\t\t\tmkdirSync(dir, { recursive: true });\n\t\t}\n\t\tconst ignorePath = join(dir, \".gitignore\");\n\t\tif (!existsSync(ignorePath)) {\n\t\t\twriteFileSync(ignorePath, \"*\\n!.gitignore\\n\", \"utf-8\");\n\t\t}\n\t}\n\n\tprivate getNpmInstallRoot(scope: SourceScope, temporary: boolean): string {\n\t\tif (temporary) {\n\t\t\treturn this.getTemporaryDir(\"npm\");\n\t\t}\n\t\tif (scope === \"project\") {\n\t\t\treturn join(this.cwd, CONFIG_DIR_NAME, \"npm\");\n\t\t}\n\t\treturn join(this.getGlobalNpmRoot(), \"..\");\n\t}\n\n\tprivate getGlobalNpmRoot(): string {\n\t\tconst npmCommand = this.getNpmCommand();\n\t\tconst commandKey = [npmCommand.command, ...npmCommand.args].join(\"\\0\");\n\t\tif (this.globalNpmRoot && this.globalNpmRootCommandKey === commandKey) {\n\t\t\treturn this.globalNpmRoot;\n\t\t}\n\t\tconst isBunPackageManager = npmCommand.command === \"bun\";\n\t\tif (isBunPackageManager) {\n\t\t\tconst binDir = this.runNpmCommandSync([\"pm\", \"bin\", \"-g\"]).trim();\n\t\t\tthis.globalNpmRoot = join(dirname(binDir), \"install\", \"global\", \"node_modules\");\n\t\t} else {\n\t\t\tthis.globalNpmRoot = this.runNpmCommandSync([\"root\", \"-g\"]).trim();\n\t\t}\n\t\tthis.globalNpmRootCommandKey = commandKey;\n\t\treturn this.globalNpmRoot;\n\t}\n\n\tprivate getNpmInstallPath(source: NpmSource, scope: SourceScope): string {\n\t\tif (scope === \"temporary\") {\n\t\t\treturn join(this.getTemporaryDir(\"npm\"), \"node_modules\", source.name);\n\t\t}\n\t\tif (scope === \"project\") {\n\t\t\treturn join(this.cwd, CONFIG_DIR_NAME, \"npm\", \"node_modules\", source.name);\n\t\t}\n\t\treturn join(this.getGlobalNpmRoot(), source.name);\n\t}\n\n\tprivate getGitInstallPath(source: GitSource, scope: SourceScope): string {\n\t\tif (scope === \"temporary\") {\n\t\t\treturn this.getTemporaryDir(`git-${source.host}`, source.path);\n\t\t}\n\t\tif (scope === \"project\") {\n\t\t\treturn join(this.cwd, CONFIG_DIR_NAME, \"git\", source.host, source.path);\n\t\t}\n\t\treturn join(this.agentDir, \"git\", source.host, source.path);\n\t}\n\n\tprivate getGitInstallRoot(scope: SourceScope): string | undefined {\n\t\tif (scope === \"temporary\") {\n\t\t\treturn undefined;\n\t\t}\n\t\tif (scope === \"project\") {\n\t\t\treturn join(this.cwd, CONFIG_DIR_NAME, \"git\");\n\t\t}\n\t\treturn join(this.agentDir, \"git\");\n\t}\n\n\tprivate getTemporaryDir(prefix: string, suffix?: string): string {\n\t\tconst hash = createHash(\"sha256\")\n\t\t\t.update(`${prefix}-${suffix ?? \"\"}`)\n\t\t\t.digest(\"hex\")\n\t\t\t.slice(0, 8);\n\t\treturn join(tmpdir(), \"aery-extensions\", prefix, hash, suffix ?? \"\");\n\t}\n\n\tprivate getBaseDirForScope(scope: SourceScope): string {\n\t\tif (scope === \"project\") {\n\t\t\treturn join(this.cwd, CONFIG_DIR_NAME);\n\t\t}\n\t\tif (scope === \"user\") {\n\t\t\treturn this.agentDir;\n\t\t}\n\t\treturn this.cwd;\n\t}\n\n\tprivate resolvePath(input: string): string {\n\t\tconst trimmed = input.trim();\n\t\tif (trimmed === \"~\") return getHomeDir();\n\t\tif (trimmed.startsWith(\"~/\")) return join(getHomeDir(), trimmed.slice(2));\n\t\tif (trimmed.startsWith(\"~\")) return join(getHomeDir(), trimmed.slice(1));\n\t\treturn resolve(this.cwd, trimmed);\n\t}\n\n\tprivate resolvePathFromBase(input: string, baseDir: string): string {\n\t\tconst trimmed = input.trim();\n\t\tif (trimmed === \"~\") return getHomeDir();\n\t\tif (trimmed.startsWith(\"~/\")) return join(getHomeDir(), trimmed.slice(2));\n\t\tif (trimmed.startsWith(\"~\")) return join(getHomeDir(), trimmed.slice(1));\n\t\treturn resolve(baseDir, trimmed);\n\t}\n\n\tprivate collectPackageResources(\n\t\tpackageRoot: string,\n\t\taccumulator: ResourceAccumulator,\n\t\tfilter: PackageFilter | undefined,\n\t\tmetadata: PathMetadata,\n\t): boolean {\n\t\tif (filter) {\n\t\t\tfor (const resourceType of RESOURCE_TYPES) {\n\t\t\t\tconst patterns = filter[resourceType as keyof PackageFilter];\n\t\t\t\tconst target = this.getTargetMap(accumulator, resourceType);\n\t\t\t\tif (patterns !== undefined) {\n\t\t\t\t\tthis.applyPackageFilter(packageRoot, patterns, resourceType, target, metadata);\n\t\t\t\t} else {\n\t\t\t\t\tthis.collectDefaultResources(packageRoot, resourceType, target, metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn true;\n\t\t}\n\n\t\tconst manifest = this.readPiManifest(packageRoot);\n\t\tif (manifest) {\n\t\t\tfor (const resourceType of RESOURCE_TYPES) {\n\t\t\t\tconst entries = manifest[resourceType as keyof PiManifest];\n\t\t\t\tthis.addManifestEntries(\n\t\t\t\t\tentries,\n\t\t\t\t\tpackageRoot,\n\t\t\t\t\tresourceType,\n\t\t\t\t\tthis.getTargetMap(accumulator, resourceType),\n\t\t\t\t\tmetadata,\n\t\t\t\t);\n\t\t\t}\n\t\t\treturn true;\n\t\t}\n\n\t\tlet hasAnyDir = false;\n\t\tfor (const resourceType of RESOURCE_TYPES) {\n\t\t\tconst dir = join(packageRoot, resourceType);\n\t\t\tif (existsSync(dir)) {\n\t\t\t\t// Collect all files from the directory (all enabled by default)\n\t\t\t\tconst files = collectResourceFiles(dir, resourceType);\n\t\t\t\tfor (const f of files) {\n\t\t\t\t\tthis.addResource(this.getTargetMap(accumulator, resourceType), f, metadata, true);\n\t\t\t\t}\n\t\t\t\thasAnyDir = true;\n\t\t\t}\n\t\t}\n\t\treturn hasAnyDir;\n\t}\n\n\tprivate collectDefaultResources(\n\t\tpackageRoot: string,\n\t\tresourceType: ResourceType,\n\t\ttarget: Map<string, { metadata: PathMetadata; enabled: boolean }>,\n\t\tmetadata: PathMetadata,\n\t): void {\n\t\tconst manifest = this.readPiManifest(packageRoot);\n\t\tconst entries = manifest?.[resourceType as keyof PiManifest];\n\t\tif (entries) {\n\t\t\tthis.addManifestEntries(entries, packageRoot, resourceType, target, metadata);\n\t\t\treturn;\n\t\t}\n\t\tconst dir = join(packageRoot, resourceType);\n\t\tif (existsSync(dir)) {\n\t\t\t// Collect all files from the directory (all enabled by default)\n\t\t\tconst files = collectResourceFiles(dir, resourceType);\n\t\t\tfor (const f of files) {\n\t\t\t\tthis.addResource(target, f, metadata, true);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate applyPackageFilter(\n\t\tpackageRoot: string,\n\t\tuserPatterns: string[],\n\t\tresourceType: ResourceType,\n\t\ttarget: Map<string, { metadata: PathMetadata; enabled: boolean }>,\n\t\tmetadata: PathMetadata,\n\t): void {\n\t\tconst { allFiles } = this.collectManifestFiles(packageRoot, resourceType);\n\n\t\tif (userPatterns.length === 0) {\n\t\t\t// Empty array explicitly disables all resources of this type\n\t\t\tfor (const f of allFiles) {\n\t\t\t\tthis.addResource(target, f, metadata, false);\n\t\t\t}\n\t\t\treturn;\n\t\t}\n\n\t\t// Apply user patterns\n\t\tconst enabledByUser = applyPatterns(allFiles, userPatterns, packageRoot);\n\n\t\tfor (const f of allFiles) {\n\t\t\tconst enabled = enabledByUser.has(f);\n\t\t\tthis.addResource(target, f, metadata, enabled);\n\t\t}\n\t}\n\n\t/**\n\t * Collect all files from a package for a resource type, applying manifest patterns.\n\t * Returns { allFiles, enabledByManifest } where enabledByManifest is the set of files\n\t * that pass the manifest's own patterns.\n\t */\n\tprivate collectManifestFiles(\n\t\tpackageRoot: string,\n\t\tresourceType: ResourceType,\n\t): { allFiles: string[]; enabledByManifest: Set<string> } {\n\t\tconst manifest = this.readPiManifest(packageRoot);\n\t\tconst entries = manifest?.[resourceType as keyof PiManifest];\n\t\tif (entries && entries.length > 0) {\n\t\t\tconst allFiles = this.collectFilesFromManifestEntries(entries, packageRoot, resourceType);\n\t\t\tconst manifestPatterns = entries.filter(isOverridePattern);\n\t\t\tconst enabledByManifest =\n\t\t\t\tmanifestPatterns.length > 0 ? applyPatterns(allFiles, manifestPatterns, packageRoot) : new Set(allFiles);\n\t\t\treturn { allFiles: Array.from(enabledByManifest), enabledByManifest };\n\t\t}\n\n\t\tconst conventionDir = join(packageRoot, resourceType);\n\t\tif (!existsSync(conventionDir)) {\n\t\t\treturn { allFiles: [], enabledByManifest: new Set() };\n\t\t}\n\t\tconst allFiles = collectResourceFiles(conventionDir, resourceType);\n\t\treturn { allFiles, enabledByManifest: new Set(allFiles) };\n\t}\n\n\tprivate readPiManifest(packageRoot: string): PiManifest | null {\n\t\tconst packageJsonPath = join(packageRoot, \"package.json\");\n\t\tif (!existsSync(packageJsonPath)) {\n\t\t\treturn null;\n\t\t}\n\n\t\ttry {\n\t\t\tconst content = readFileSync(packageJsonPath, \"utf-8\");\n\t\t\tconst pkg = JSON.parse(content) as { pi?: PiManifest; aery?: PiManifest };\n\t\t\treturn pkg.aery ?? pkg.pi ?? null;\n\t\t} catch {\n\t\t\treturn null;\n\t\t}\n\t}\n\n\tprivate addManifestEntries(\n\t\tentries: string[] | undefined,\n\t\troot: string,\n\t\tresourceType: ResourceType,\n\t\ttarget: Map<string, { metadata: PathMetadata; enabled: boolean }>,\n\t\tmetadata: PathMetadata,\n\t): void {\n\t\tif (!entries) return;\n\n\t\tconst allFiles = this.collectFilesFromManifestEntries(entries, root, resourceType);\n\t\tconst patterns = entries.filter(isOverridePattern);\n\t\tconst enabledPaths = applyPatterns(allFiles, patterns, root);\n\n\t\tfor (const f of allFiles) {\n\t\t\tif (enabledPaths.has(f)) {\n\t\t\t\tthis.addResource(target, f, metadata, true);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate collectFilesFromManifestEntries(entries: string[], root: string, resourceType: ResourceType): string[] {\n\t\tconst sourceEntries = entries.filter((entry) => !isOverridePattern(entry));\n\t\tconst resolved = sourceEntries.flatMap((entry) => {\n\t\t\tif (!hasGlobPattern(entry)) {\n\t\t\t\treturn [resolve(root, entry)];\n\t\t\t}\n\n\t\t\treturn globSync(entry, {\n\t\t\t\tcwd: root,\n\t\t\t\tabsolute: true,\n\t\t\t\tdot: false,\n\t\t\t\tnodir: false,\n\t\t\t}).map((match) => resolve(match));\n\t\t});\n\t\treturn this.collectFilesFromPaths(resolved, resourceType);\n\t}\n\n\tprivate resolveLocalEntries(\n\t\tentries: string[],\n\t\tresourceType: ResourceType,\n\t\ttarget: Map<string, { metadata: PathMetadata; enabled: boolean }>,\n\t\tmetadata: PathMetadata,\n\t\tbaseDir: string,\n\t): void {\n\t\tif (entries.length === 0) return;\n\n\t\t// Collect all files from plain entries (non-pattern entries)\n\t\tconst { plain, patterns } = splitPatterns(entries);\n\t\tconst resolvedPlain = plain.map((p) => this.resolvePathFromBase(p, baseDir));\n\t\tconst allFiles = this.collectFilesFromPaths(resolvedPlain, resourceType);\n\n\t\t// Determine which files are enabled based on patterns\n\t\tconst enabledPaths = applyPatterns(allFiles, patterns, baseDir);\n\n\t\t// Add all files with their enabled state\n\t\tfor (const f of allFiles) {\n\t\t\tthis.addResource(target, f, metadata, enabledPaths.has(f));\n\t\t}\n\t}\n\n\tprivate addAutoDiscoveredResources(\n\t\taccumulator: ResourceAccumulator,\n\t\tglobalSettings: ReturnType<SettingsManager[\"getGlobalSettings\"]>,\n\t\tprojectSettings: ReturnType<SettingsManager[\"getProjectSettings\"]>,\n\t\tglobalBaseDir: string,\n\t\tprojectBaseDir: string,\n\t): void {\n\t\tconst userMetadata: PathMetadata = {\n\t\t\tsource: \"auto\",\n\t\t\tscope: \"user\",\n\t\t\torigin: \"top-level\",\n\t\t\tbaseDir: globalBaseDir,\n\t\t};\n\t\tconst projectMetadata: PathMetadata = {\n\t\t\tsource: \"auto\",\n\t\t\tscope: \"project\",\n\t\t\torigin: \"top-level\",\n\t\t\tbaseDir: projectBaseDir,\n\t\t};\n\n\t\tconst userOverrides = {\n\t\t\textensions: (globalSettings.extensions ?? []) as string[],\n\t\t\tskills: (globalSettings.skills ?? []) as string[],\n\t\t\tprompts: (globalSettings.prompts ?? []) as string[],\n\t\t\tthemes: (globalSettings.themes ?? []) as string[],\n\t\t};\n\t\tconst projectOverrides = {\n\t\t\textensions: (projectSettings.extensions ?? []) as string[],\n\t\t\tskills: (projectSettings.skills ?? []) as string[],\n\t\t\tprompts: (projectSettings.prompts ?? []) as string[],\n\t\t\tthemes: (projectSettings.themes ?? []) as string[],\n\t\t};\n\n\t\tconst userDirs = {\n\t\t\textensions: join(globalBaseDir, \"extensions\"),\n\t\t\tskills: join(globalBaseDir, \"skills\"),\n\t\t\tprompts: join(globalBaseDir, \"prompts\"),\n\t\t\tthemes: join(globalBaseDir, \"themes\"),\n\t\t};\n\t\tconst projectDirs = {\n\t\t\textensions: join(projectBaseDir, \"extensions\"),\n\t\t\tskills: join(projectBaseDir, \"skills\"),\n\t\t\tprompts: join(projectBaseDir, \"prompts\"),\n\t\t\tthemes: join(projectBaseDir, \"themes\"),\n\t\t};\n\t\tconst userAgentsSkillsDir = join(getHomeDir(), \".agents\", \"skills\");\n\t\tconst projectAgentsSkillDirs = collectAncestorAgentsSkillDirs(this.cwd).filter(\n\t\t\t(dir) => resolve(dir) !== resolve(userAgentsSkillsDir),\n\t\t);\n\n\t\tconst addResources = (\n\t\t\tresourceType: ResourceType,\n\t\t\tpaths: string[],\n\t\t\tmetadata: PathMetadata,\n\t\t\toverrides: string[],\n\t\t\tbaseDir: string,\n\t\t) => {\n\t\t\tconst target = this.getTargetMap(accumulator, resourceType);\n\t\t\tfor (const path of paths) {\n\t\t\t\tconst enabled = isEnabledByOverrides(path, overrides, baseDir);\n\t\t\t\tthis.addResource(target, path, metadata, enabled);\n\t\t\t}\n\t\t};\n\n\t\taddResources(\n\t\t\t\"extensions\",\n\t\t\tcollectAutoExtensionEntries(projectDirs.extensions),\n\t\t\tprojectMetadata,\n\t\t\tprojectOverrides.extensions,\n\t\t\tprojectBaseDir,\n\t\t);\n\t\taddResources(\n\t\t\t\"skills\",\n\t\t\t[\n\t\t\t\t...collectAutoSkillEntries(projectDirs.skills, \"aery\"),\n\t\t\t\t...projectAgentsSkillDirs.flatMap((dir) => collectAutoSkillEntries(dir, \"agents\")),\n\t\t\t],\n\t\t\tprojectMetadata,\n\t\t\tprojectOverrides.skills,\n\t\t\tprojectBaseDir,\n\t\t);\n\t\taddResources(\n\t\t\t\"prompts\",\n\t\t\tcollectAutoPromptEntries(projectDirs.prompts),\n\t\t\tprojectMetadata,\n\t\t\tprojectOverrides.prompts,\n\t\t\tprojectBaseDir,\n\t\t);\n\t\taddResources(\n\t\t\t\"themes\",\n\t\t\tcollectAutoThemeEntries(projectDirs.themes),\n\t\t\tprojectMetadata,\n\t\t\tprojectOverrides.themes,\n\t\t\tprojectBaseDir,\n\t\t);\n\n\t\taddResources(\n\t\t\t\"extensions\",\n\t\t\tcollectAutoExtensionEntries(userDirs.extensions),\n\t\t\tuserMetadata,\n\t\t\tuserOverrides.extensions,\n\t\t\tglobalBaseDir,\n\t\t);\n\t\taddResources(\n\t\t\t\"skills\",\n\t\t\t[\n\t\t\t\t...collectAutoSkillEntries(userDirs.skills, \"aery\"),\n\t\t\t\t...collectAutoSkillEntries(userAgentsSkillsDir, \"agents\"),\n\t\t\t],\n\t\t\tuserMetadata,\n\t\t\tuserOverrides.skills,\n\t\t\tglobalBaseDir,\n\t\t);\n\t\taddResources(\n\t\t\t\"prompts\",\n\t\t\tcollectAutoPromptEntries(userDirs.prompts),\n\t\t\tuserMetadata,\n\t\t\tuserOverrides.prompts,\n\t\t\tglobalBaseDir,\n\t\t);\n\t\taddResources(\n\t\t\t\"themes\",\n\t\t\tcollectAutoThemeEntries(userDirs.themes),\n\t\t\tuserMetadata,\n\t\t\tuserOverrides.themes,\n\t\t\tglobalBaseDir,\n\t\t);\n\t}\n\n\tprivate collectFilesFromPaths(paths: string[], resourceType: ResourceType): string[] {\n\t\tconst files: string[] = [];\n\t\tfor (const p of paths) {\n\t\t\tif (!existsSync(p)) continue;\n\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(p);\n\t\t\t\tif (stats.isFile()) {\n\t\t\t\t\tfiles.push(p);\n\t\t\t\t} else if (stats.isDirectory()) {\n\t\t\t\t\tfiles.push(...collectResourceFiles(p, resourceType));\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\t// Ignore errors\n\t\t\t}\n\t\t}\n\t\treturn files;\n\t}\n\n\tprivate getTargetMap(\n\t\taccumulator: ResourceAccumulator,\n\t\tresourceType: ResourceType,\n\t): Map<string, { metadata: PathMetadata; enabled: boolean }> {\n\t\tswitch (resourceType) {\n\t\t\tcase \"extensions\":\n\t\t\t\treturn accumulator.extensions;\n\t\t\tcase \"skills\":\n\t\t\t\treturn accumulator.skills;\n\t\t\tcase \"prompts\":\n\t\t\t\treturn accumulator.prompts;\n\t\t\tcase \"themes\":\n\t\t\t\treturn accumulator.themes;\n\t\t\tdefault:\n\t\t\t\tthrow new Error(`Unknown resource type: ${resourceType}`);\n\t\t}\n\t}\n\n\tprivate addResource(\n\t\tmap: Map<string, { metadata: PathMetadata; enabled: boolean }>,\n\t\tpath: string,\n\t\tmetadata: PathMetadata,\n\t\tenabled: boolean,\n\t): void {\n\t\tif (!path) return;\n\t\tif (!map.has(path)) {\n\t\t\tmap.set(path, { metadata, enabled });\n\t\t}\n\t}\n\n\tprivate createAccumulator(): ResourceAccumulator {\n\t\treturn {\n\t\t\textensions: new Map(),\n\t\t\tskills: new Map(),\n\t\t\tprompts: new Map(),\n\t\t\tthemes: new Map(),\n\t\t};\n\t}\n\n\tprivate toResolvedPaths(accumulator: ResourceAccumulator): ResolvedPaths {\n\t\tconst mapToResolved = (\n\t\t\tentries: Map<string, { metadata: PathMetadata; enabled: boolean }>,\n\t\t): ResolvedResource[] => {\n\t\t\tconst resolved = Array.from(entries.entries()).map(([path, { metadata, enabled }]) => ({\n\t\t\t\tpath,\n\t\t\t\tenabled,\n\t\t\t\tmetadata,\n\t\t\t}));\n\t\t\tresolved.sort((a, b) => resourcePrecedenceRank(a.metadata) - resourcePrecedenceRank(b.metadata));\n\n\t\t\tconst seen = new Set<string>();\n\t\t\treturn resolved.filter((entry) => {\n\t\t\t\tconst canonicalPath = canonicalizePath(entry.path);\n\t\t\t\tif (seen.has(canonicalPath)) return false;\n\t\t\t\tseen.add(canonicalPath);\n\t\t\t\treturn true;\n\t\t\t});\n\t\t};\n\n\t\treturn {\n\t\t\textensions: mapToResolved(accumulator.extensions),\n\t\t\tskills: mapToResolved(accumulator.skills),\n\t\t\tprompts: mapToResolved(accumulator.prompts),\n\t\t\tthemes: mapToResolved(accumulator.themes),\n\t\t};\n\t}\n\n\tprivate shouldUseWindowsShell(command: string): boolean {\n\t\tif (process.platform !== \"win32\") {\n\t\t\treturn false;\n\t\t}\n\t\tconst commandName = basename(command).toLowerCase();\n\t\treturn (\n\t\t\tcommandName === \"npm\" ||\n\t\t\tcommandName === \"npx\" ||\n\t\t\tcommandName === \"pnpm\" ||\n\t\t\tcommandName === \"yarn\" ||\n\t\t\tcommandName === \"yarnpkg\" ||\n\t\t\tcommandName === \"corepack\" ||\n\t\t\tcommandName.endsWith(\".cmd\") ||\n\t\t\tcommandName.endsWith(\".bat\")\n\t\t);\n\t}\n\n\tprivate spawnCommand(command: string, args: string[], options?: { cwd?: string }): ChildProcess {\n\t\treturn spawn(command, args, {\n\t\t\tcwd: options?.cwd,\n\t\t\tstdio: isStdoutTakenOver() ? [\"ignore\", 2, 2] : \"inherit\",\n\t\t\tshell: this.shouldUseWindowsShell(command),\n\t\t\tenv: getEnv(),\n\t\t});\n\t}\n\n\tprivate spawnCaptureCommand(\n\t\tcommand: string,\n\t\targs: string[],\n\t\toptions?: { cwd?: string; env?: Record<string, string> },\n\t): ChildProcessByStdio<null, Readable, Readable> {\n\t\tconst baseEnv = getEnv();\n\t\treturn spawn(command, args, {\n\t\t\tcwd: options?.cwd,\n\t\t\tstdio: [\"ignore\", \"pipe\", \"pipe\"],\n\t\t\tshell: this.shouldUseWindowsShell(command),\n\t\t\tenv: options?.env ? { ...baseEnv, ...options.env } : baseEnv,\n\t\t});\n\t}\n\n\tprivate runCommandCapture(\n\t\tcommand: string,\n\t\targs: string[],\n\t\toptions?: { cwd?: string; timeoutMs?: number; env?: Record<string, string> },\n\t): Promise<string> {\n\t\treturn new Promise((resolvePromise, reject) => {\n\t\t\tconst child = this.spawnCaptureCommand(command, args, options);\n\t\t\tlet stdout = \"\";\n\t\t\tlet stderr = \"\";\n\t\t\tlet timedOut = false;\n\t\t\tconst timeout =\n\t\t\t\ttypeof options?.timeoutMs === \"number\"\n\t\t\t\t\t? setTimeout(() => {\n\t\t\t\t\t\t\ttimedOut = true;\n\t\t\t\t\t\t\tchild.kill();\n\t\t\t\t\t\t}, options.timeoutMs)\n\t\t\t\t\t: undefined;\n\n\t\t\tchild.stdout?.on(\"data\", (data) => {\n\t\t\t\tstdout += data.toString();\n\t\t\t});\n\t\t\tchild.stderr?.on(\"data\", (data) => {\n\t\t\t\tstderr += data.toString();\n\t\t\t});\n\t\t\tchild.once(\"error\", (error) => {\n\t\t\t\tif (timeout) clearTimeout(timeout);\n\t\t\t\treject(error);\n\t\t\t});\n\t\t\tchild.once(\"close\", (code, signal) => {\n\t\t\t\tif (timeout) clearTimeout(timeout);\n\t\t\t\tif (timedOut) {\n\t\t\t\t\treject(new Error(`${command} ${args.join(\" \")} timed out after ${options?.timeoutMs}ms`));\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tif (code === 0) {\n\t\t\t\t\tresolvePromise(stdout.trim());\n\t\t\t\t\treturn;\n\t\t\t\t}\n\t\t\t\tconst exitStatus = code === null ? `signal ${signal ?? \"unknown\"}` : `code ${code}`;\n\t\t\t\treject(new Error(`${command} ${args.join(\" \")} failed with ${exitStatus}: ${stderr || stdout}`));\n\t\t\t});\n\t\t});\n\t}\n\n\tprivate runCommand(command: string, args: string[], options?: { cwd?: string }): Promise<void> {\n\t\treturn new Promise((resolvePromise, reject) => {\n\t\t\tconst child = this.spawnCommand(command, args, options);\n\t\t\tchild.on(\"error\", reject);\n\t\t\tchild.on(\"exit\", (code) => {\n\t\t\t\tif (code === 0) {\n\t\t\t\t\tresolvePromise();\n\t\t\t\t} else {\n\t\t\t\t\treject(new Error(`${command} ${args.join(\" \")} failed with code ${code}`));\n\t\t\t\t}\n\t\t\t});\n\t\t});\n\t}\n\n\tprivate runCommandSync(command: string, args: string[]): string {\n\t\tconst result = spawnSync(command, args, {\n\t\t\tstdio: [\"ignore\", \"pipe\", \"pipe\"],\n\t\t\tencoding: \"utf-8\",\n\t\t\tshell: this.shouldUseWindowsShell(command),\n\t\t\tenv: getEnv(),\n\t\t});\n\t\tif (result.error || result.status !== 0) {\n\t\t\tthrow new Error(\n\t\t\t\t`Failed to run ${command} ${args.join(\" \")}: ${result.error?.message || result.stderr || result.stdout}`,\n\t\t\t);\n\t\t}\n\t\treturn (result.stdout || result.stderr || \"\").trim();\n\t}\n}\n"]}