@elizaos/sweagent-root 2.0.0-alpha

package/python/tests/test_data/trajectories/gpt4__swe-bench-dev-easy_first_only__default__t-0.00__p-0.95__c-3.00__install-1/args.yaml

@@ -0,0 +1,520 @@
+actions:
+  apply_patch_locally: false
+  open_pr: false
+  push_gh_repo_url: ''
+  skip_if_commits_reference_issue: true
+agent:
+  config:
+    _commands:
+    - arguments:
+        line_number:
+          description: the line number to move the window to (if not provided, the
+            window will start at the top of the file)
+          required: false
+          type: integer
+        path:
+          description: the path to the file to open
+          required: true
+          type: string
+      code: 'open() {    if [ -z "$1" ]    then        echo "Usage: open <file>"        return    fi    #
+        Check if the second argument is provided    if [ -n "$2" ]; then        #
+        Check if the provided argument is a valid number        if ! [[ $2 =~ ^[0-9]+$
+        ]]; then            echo "Usage: open <file> [<line_number>]"            echo
+        "Error: <line_number> must be a number"            return  # Exit if the line
+        number is not valid        fi        local max_line=$(awk ''END {print NR}''
+        $1)        if [ $2 -gt $max_line ]; then            echo "Warning: <line_number>
+        ($2) is greater than the number of lines in the file ($max_line)"            echo
+        "Warning: Setting <line_number> to $max_line"            local line_number=$(jq
+        -n "$max_line")  # Set line number to max if greater than max        elif
+        [ $2 -lt 1 ]; then            echo "Warning: <line_number> ($2) is less than
+        1"            echo "Warning: Setting <line_number> to 1"            local
+        line_number=$(jq -n "1")  # Set line number to 1 if less than 1        else            local
+        OFFSET=$(jq -n "$WINDOW/6" | jq ''floor'')            local line_number=$(jq
+        -n "[$2 + $WINDOW/2 - $OFFSET, 1] | max | floor")        fi    else        local
+        line_number=$(jq -n "$WINDOW/2")  # Set default line number if not provided    fi    if
+        [ -f "$1" ]; then        export CURRENT_FILE=$(realpath $1)        export
+        CURRENT_LINE=$line_number        _constrain_line        _print    elif [ -d
+        "$1" ]; then        echo "Error: $1 is a directory. You can only open files.
+        Use cd or ls to navigate directories."    else        echo "File $1 not found"    fi}'
+      docstring: opens the file at the given path in the editor. If line_number is
+        provided, the window will be move to include that line
+      end_name: null
+      name: open
+      signature: open <path> [<line_number>]
+    - arguments:
+        line_number:
+          description: the line number to move the window to
+          required: true
+          type: integer
+      code: 'goto() {    if [ $# -gt 1 ]; then        echo "goto allows only one line
+        number at a time."        return    fi    if [ -z "$CURRENT_FILE" ]    then        echo
+        "No file open. Use the open command first."        return    fi    if [ -z
+        "$1" ]    then        echo "Usage: goto <line>"        return    fi    if
+        ! [[ $1 =~ ^[0-9]+$ ]]    then        echo "Usage: goto <line>"        echo
+        "Error: <line> must be a number"        return    fi    local max_line=$(awk
+        ''END {print NR}'' $CURRENT_FILE)    if [ $1 -gt $max_line ]    then        echo
+        "Error: <line> must be less than or equal to $max_line"        return    fi    local
+        OFFSET=$(jq -n "$WINDOW/6" | jq ''floor'')    export CURRENT_LINE=$(jq -n
+        "[$1 + $WINDOW/2 - $OFFSET, 1] | max | floor")    _constrain_line    _print}'
+      docstring: moves the window to show <line_number>
+      end_name: null
+      name: goto
+      signature: goto <line_number>
+    - arguments: null
+      code: scroll_down() {    if [ -z "$CURRENT_FILE" ]    then        echo "No file
+        open. Use the open command first."        return    fi    export CURRENT_LINE=$(jq
+        -n "$CURRENT_LINE + $WINDOW - $OVERLAP")    _constrain_line    _print}
+      docstring: moves the window down {WINDOW} lines
+      end_name: null
+      name: scroll_down
+      signature: scroll_down
+    - arguments: null
+      code: scroll_up() {    if [ -z "$CURRENT_FILE" ]    then        echo "No file
+        open. Use the open command first."        return    fi    export CURRENT_LINE=$(jq
+        -n "$CURRENT_LINE - $WINDOW + $OVERLAP")    _constrain_line    _print}
+      docstring: moves the window down {WINDOW} lines
+      end_name: null
+      name: scroll_up
+      signature: scroll_down
+    - arguments:
+        filename:
+          description: the name of the file to create
+          required: true
+          type: string
+      code: "create() {    if [ -z \"$1\" ]; then        echo \"Usage: create <filename>\"\
+        \        return    fi    # Check if the file already exists    if [ -e \"\
+        $1\" ]; then        echo \"Error: File '$1' already exists.\"\t\topen \"$1\"\
+        \        return    fi    # Create the file an empty new line    printf \"\\\
+        n\" > \"$1\"    # Use the existing open command to open the created file \
+        \   open \"$1\"}"
+      docstring: creates and opens a new file with the given name
+      end_name: null
+      name: create
+      signature: create <filename>
+    - arguments: null
+      code: 'submit() {    cd $ROOT    # Check if the patch file exists and is non-empty    if
+        [ -s "/root/test.patch" ]; then        # Apply the patch in reverse        git
+        apply -R < "/root/test.patch"    fi    git add -A    git diff --cached > model.patch    echo
+        "<<SUBMISSION||"    cat model.patch    echo "||SUBMISSION>>"}'
+      docstring: submits your current code and terminates the session
+      end_name: null
+      name: submit
+      signature: submit
+    - arguments:
+        dir:
+          description: the directory to search in (if not provided, searches in the
+            current directory)
+          required: false
+          type: string
+        search_term:
+          description: the term to search for
+          required: true
+          type: string
+      code: 'search_dir() {    if [ $# -eq 1 ]; then        local search_term="$1"        local
+        dir="./"    elif [ $# -eq 2 ]; then        local search_term="$1"        if
+        [ -d "$2" ]; then            local dir="$2"        else            echo "Directory
+        $2 not found"            return        fi    else        echo "Usage: search_dir
+        <search_term> [<dir>]"        return    fi    dir=$(realpath "$dir")    local
+        matches=$(find "$dir" -type f ! -path ''*/.*'' -exec grep -nIH -- "$search_term"
+        {} + | cut -d: -f1 | sort | uniq -c)    # if no matches, return    if [ -z
+        "$matches" ]; then        echo "No matches found for \"$search_term\" in $dir"        return    fi    #
+        Calculate total number of matches    local num_matches=$(echo "$matches" |
+        awk ''{sum+=$1} END {print sum}'')    # calculate total number of files matched    local
+        num_files=$(echo "$matches" | wc -l | awk ''{$1=$1; print $0}'')    # if num_files
+        is > 100, print an error    if [ $num_files -gt 100 ]; then        echo "More
+        than $num_files files matched for \"$search_term\" in $dir. Please narrow
+        your search."        return    fi        echo "Found $num_matches matches
+        for \"$search_term\" in $dir:"    echo "$matches" | awk ''{$2=$2; gsub(/^\.+\/+/,
+        "./", $2); print $2 " ("$1" matches)"}''    echo "End of matches for \"$search_term\"
+        in $dir"}'
+      docstring: searches for search_term in all files in dir. If dir is not provided,
+        searches in the current directory
+      end_name: null
+      name: search_dir
+      signature: search_dir <search_term> [<dir>]
+    - arguments:
+        file:
+          description: the file to search in (if not provided, searches in the current
+            open file)
+          required: false
+          type: string
+        search_term:
+          description: the term to search for
+          required: true
+          type: string
+      code: 'search_file() {    # Check if the first argument is provided    if [
+        -z "$1" ]; then        echo "Usage: search_file <search_term> [<file>]"        return    fi    #
+        Check if the second argument is provided    if [ -n "$2" ]; then        #
+        Check if the provided argument is a valid file        if [ -f "$2" ]; then            local
+        file="$2"  # Set file if valid        else            echo "Usage: search_file
+        <search_term> [<file>]"            echo "Error: File name $2 not found. Please
+        provide a valid file name."            return  # Exit if the file is not valid        fi    else        #
+        Check if a file is open        if [ -z "$CURRENT_FILE" ]; then            echo
+        "No file open. Use the open command first."            return  # Exit if no
+        file is open        fi        local file="$CURRENT_FILE"  # Set file to the
+        current open file    fi    local search_term="$1"    file=$(realpath "$file")    #
+        Use grep to directly get the desired formatted output    local matches=$(grep
+        -nH -- "$search_term" "$file")    # Check if no matches were found    if [
+        -z "$matches" ]; then        echo "No matches found for \"$search_term\" in
+        $file"        return    fi    # Calculate total number of matches    local
+        num_matches=$(echo "$matches" | wc -l | awk ''{$1=$1; print $0}'')        #
+        calculate total number of lines matched    local num_lines=$(echo "$matches"
+        | cut -d: -f1 | sort | uniq | wc -l | awk ''{$1=$1; print $0}'')    # if num_lines
+        is > 100, print an error    if [ $num_lines -gt 100 ]; then        echo "More
+        than $num_lines lines matched for \"$search_term\" in $file. Please narrow
+        your search."        return    fi    # Print the total number of matches and
+        the matches themselves    echo "Found $num_matches matches for \"$search_term\"
+        in $file:"    echo "$matches" | cut -d: -f1-2 | sort -u -t: -k2,2n | while
+        IFS=: read -r filename line_number; do        echo "Line $line_number:$(sed
+        -n "${line_number}p" "$file")"    done    echo "End of matches for \"$search_term\"
+        in $file"}'
+      docstring: searches for search_term in file. If file is not provided, searches
+        in the current open file
+      end_name: null
+      name: search_file
+      signature: search_file <search_term> [<file>]
+    - arguments:
+        dir:
+          description: the directory to search in (if not provided, searches in the
+            current directory)
+          required: false
+          type: string
+        file_name:
+          description: the name of the file to search for
+          required: true
+          type: string
+      code: 'find_file() {    if [ $# -eq 1 ]; then        local file_name="$1"        local
+        dir="./"    elif [ $# -eq 2 ]; then        local file_name="$1"        if
+        [ -d "$2" ]; then            local dir="$2"        else            echo "Directory
+        $2 not found"            return        fi    else        echo "Usage: find_file
+        <file_name> [<dir>]"        return    fi    dir=$(realpath "$dir")    local
+        matches=$(find "$dir" -type f -name "$file_name")    # if no matches, return    if
+        [ -z "$matches" ]; then        echo "No matches found for \"$file_name\" in
+        $dir"        return    fi    # Calculate total number of matches    local
+        num_matches=$(echo "$matches" | wc -l | awk ''{$1=$1; print $0}'')    echo
+        "Found $num_matches matches for \"$file_name\" in $dir:"    echo "$matches"
+        | awk ''{print $0}''}'
+      docstring: finds all files with the given name in dir. If dir is not provided,
+        searches in the current directory
+      end_name: null
+      name: find_file
+      signature: find_file <file_name> [<dir>]
+    - arguments:
+        end_line:
+          description: the line number to end the edit at (inclusive)
+          required: true
+          type: integer
+        replacement_text:
+          description: the text to replace the current selection with
+          required: true
+          type: string
+        start_line:
+          description: the line number to start the edit at
+          required: true
+          type: integer
+      code: 'edit() {    if [ -z "$CURRENT_FILE" ]    then        echo ''No file open.
+        Use the `open` command first.''        return    fi    local start_line="$(echo
+        $1: | cut -d: -f1)"    local end_line="$(echo $1: | cut -d: -f2)"    if [
+        -z "$start_line" ] || [ -z "$end_line" ]    then        echo "Usage: edit
+        <start_line>:<end_line>"        return    fi    local re=''^[0-9]+$''    if
+        ! [[ $start_line =~ $re ]]; then        echo "Usage: edit <start_line>:<end_line>"        echo
+        "Error: start_line must be a number"        return    fi    if ! [[ $end_line
+        =~ $re ]]; then        echo "Usage: edit <start_line>:<end_line>"        echo
+        "Error: end_line must be a number"        return    fi    # Bash array starts
+        at 0, so let''s adjust    local start_line=$((start_line - 1))    local end_line=$((end_line))    local
+        line_count=0    local replacement=()    while IFS= read -r line    do        replacement+=("$line")        ((line_count++))    done    #
+        Create a backup of the current file    cp "$CURRENT_FILE" "/root/$(basename
+        "$CURRENT_FILE")_backup"    # Read the file line by line into an array    mapfile
+        -t lines < "$CURRENT_FILE"    local new_lines=("${lines[@]:0:$start_line}"
+        "${replacement[@]}" "${lines[@]:$((end_line))}")    # Write the new stuff
+        directly back into the original file    printf "%s\n" "${new_lines[@]}" >|
+        "$CURRENT_FILE"        # Run linter    if [[ $CURRENT_FILE == *.py ]]; then        lint_output=$(flake8
+        --select=F821,F822,F831,E111,E112,E113,E999,E902 "$CURRENT_FILE" 2>&1)    else        #
+        do nothing        lint_output=""    fi    # if there is no output, then the
+        file is good    if [ -z "$lint_output" ]; then        export CURRENT_LINE=$start_line        _constrain_line        _print        echo
+        "File updated. Please review the changes and make sure they are correct (correct
+        indentation, no duplicate lines, etc). Edit the file again if necessary."    else        echo
+        "Your proposed edit has introduced new syntax error(s). Please understand
+        the fixes and retry your edit command."        echo ""        echo "ERRORS:"        _split_string
+        "$lint_output"        echo ""        # Save original values        original_current_line=$CURRENT_LINE        original_window=$WINDOW        #
+        Update values        export CURRENT_LINE=$(( (line_count / 2) + start_line
+        )) # Set to "center" of edit        export WINDOW=$((line_count + 10)) # Show
+        +/- 5 lines around edit        echo "This is how your edit would have looked
+        if applied"        echo "-------------------------------------------------"        _constrain_line        _print        echo
+        "-------------------------------------------------"        echo ""        #
+        Restoring CURRENT_FILE to original contents.        cp "/root/$(basename "$CURRENT_FILE")_backup"
+        "$CURRENT_FILE"        export CURRENT_LINE=$(( ((end_line - start_line + 1)
+        / 2) + start_line ))        export WINDOW=$((end_line - start_line + 10))        echo
+        "This is the original code before your edit"        echo "-------------------------------------------------"        _constrain_line        _print        echo
+        "-------------------------------------------------"        # Restore original
+        values        export CURRENT_LINE=$original_current_line        export WINDOW=$original_window        echo
+        "Your changes have NOT been applied. Please fix your edit command and try
+        again."        echo "You either need to 1) Specify the correct start/end line
+        arguments or 2) Correct your edit code."        echo "DO NOT re-run the same
+        failed edit command. Running it again will lead to the same error."    fi    #
+        Remove backup file    rm -f "/root/$(basename "$CURRENT_FILE")_backup"}'
+      docstring: replaces lines <start_line> through <end_line> (inclusive) with the
+        given text in the open file. The replacement text is terminated by a line
+        with only end_of_edit on it. All of the <replacement text> will be entered,
+        so make sure your indentation is formatted properly. Python files will be
+        checked for syntax errors after the edit. If the system detects a syntax error,
+        the edit will not be executed. Simply try to edit the file again, but make
+        sure to read the error message and modify the edit command you issue accordingly.
+        Issuing the same command a second time will just lead to the same error message
+        again.
+      end_name: end_of_edit
+      name: edit
+      signature: |-
+        edit <start_line>:<end_line>
+        <replacement_text>
+        end_of_edit
+    _subroutines: {}
+    blocklist:
+    - vim
+    - vi
+    - emacs
+    - nano
+    - nohup
+    - git
+    blocklist_error_template: Interactive operation '{name}' is not supported by this
+      environment
+    blocklist_standalone:
+    - python
+    - python3
+    - ipython
+    - bash
+    - sh
+    - exit
+    - /bin/bash
+    - /bin/sh
+    - nohup
+    - vi
+    - vim
+    - emacs
+    - nano
+    command_docs: |+
+      open:
+        docstring: opens the file at the given path in the editor. If line_number is provided, the window will be move to include that line
+        signature: open <path> [<line_number>]
+        arguments:
+          - path (string) [required]: the path to the file to open
+          - line_number (integer) [optional]: the line number to move the window to (if not provided, the window will start at the top of the file)
+
+      goto:
+        docstring: moves the window to show <line_number>
+        signature: goto <line_number>
+        arguments:
+          - line_number (integer) [required]: the line number to move the window to
+
+      scroll_down:
+        docstring: moves the window down {WINDOW} lines
+        signature: scroll_down
+
+      scroll_up:
+        docstring: moves the window down {WINDOW} lines
+        signature: scroll_down
+
+      create:
+        docstring: creates and opens a new file with the given name
+        signature: create <filename>
+        arguments:
+          - filename (string) [required]: the name of the file to create
+
+      submit:
+        docstring: submits your current code and terminates the session
+        signature: submit
+
+      search_dir:
+        docstring: searches for search_term in all files in dir. If dir is not provided, searches in the current directory
+        signature: search_dir <search_term> [<dir>]
+        arguments:
+          - search_term (string) [required]: the term to search for
+          - dir (string) [optional]: the directory to search in (if not provided, searches in the current directory)
+
+      search_file:
+        docstring: searches for search_term in file. If file is not provided, searches in the current open file
+        signature: search_file <search_term> [<file>]
+        arguments:
+          - search_term (string) [required]: the term to search for
+          - file (string) [optional]: the file to search in (if not provided, searches in the current open file)
+
+      find_file:
+        docstring: finds all files with the given name in dir. If dir is not provided, searches in the current directory
+        signature: find_file <file_name> [<dir>]
+        arguments:
+          - file_name (string) [required]: the name of the file to search for
+          - dir (string) [optional]: the directory to search in (if not provided, searches in the current directory)
+
+      edit:
+        docstring: replaces lines <start_line> through <end_line> (inclusive) with the given text in the open file. The replacement text is terminated by a line with only end_of_edit on it. All of the <replacement text> will be entered, so make sure your indentation is formatted properly. Python files will be checked for syntax errors after the edit. If the system detects a syntax error, the edit will not be executed. Simply try to edit the file again, but make sure to read the error message and modify the edit command you issue accordingly. Issuing the same command a second time will just lead to the same error message again.
+        signature: edit <start_line>:<end_line>
+      <replacement_text>
+      end_of_edit
+        arguments:
+          - start_line (integer) [required]: the line number to start the edit at
+          - end_line (integer) [required]: the line number to end the edit at (inclusive)
+          - replacement_text (string) [required]: the text to replace the current selection with
+
+    command_files:
+    - config/commands/defaults.sh
+    - config/commands/search.sh
+    - config/commands/edit_linting.sh
+    - config/commands/_split_string.py
+    demonstration_template: |
+      Here is a demonstration of how to correctly accomplish this task.
+      It is included to show you how to correctly use the interface.
+      You do not need to follow exactly what is done in the demonstration.
+      --- DEMONSTRATION ---
+      {demonstration}
+      --- END OF DEMONSTRATION ---
+    demonstrations:
+    - trajectories/demonstrations/replay__marshmallow-code__marshmallow-1867__default_sys-env_window100__t-0.20__p-0.95__c-2.00__install-1/marshmallow-code__marshmallow-1867.traj
+    env_variables:
+      CURRENT_FILE: ''
+      CURRENT_LINE: '0'
+      OVERLAP: '2'
+      SEARCH_FILES: ()
+      SEARCH_INDEX: '0'
+      SEARCH_RESULTS: ()
+      WINDOW: '100'
+    format_error_template: |
+      Your output was not formatted correctly. You must always include one discussion and one command as part of your response. Make sure you do not have multiple discussion/command tags.
+      Please make sure your output precisely matches the following format:
+      DISCUSSION
+      Discuss here with yourself about what your planning and what you're going to do in this step.
+
+      ```
+      command(s) that you're going to run
+      ```
+    history_processors: []
+    instance_template: "We're currently solving the following issue within our repository.\
+      \ Here's the issue text:\nISSUE:\n{issue}\n\nINSTRUCTIONS:\nNow, you're going\
+      \ to solve this issue on your own. Your terminal session has started and you're\
+      \ in the repository's root directory. You can use any bash commands or the special\
+      \ interface to help you. Edit all the files you need to and run any checks or\
+      \ tests that you want. \nRemember, YOU CAN ONLY ENTER ONE COMMAND AT A TIME.\
+      \ You should always wait for feedback after every command. \nWhen you're satisfied\
+      \ with all of the changes you've made, you can submit your changes to the code\
+      \ base by simply running the submit command.\nNote however that you cannot use\
+      \ any interactive session commands (e.g. python, vim) in this environment, but\
+      \ you can write scripts and run them. E.g. you can write a python script and\
+      \ then run it with `python <script_name>.py`.\n\nNOTE ABOUT THE EDIT COMMAND:\
+      \ Indentation really matters! When editing a file, make sure to insert appropriate\
+      \ indentation before each line! \n\nIMPORTANT TIPS:\n1. Always start by trying\
+      \ to replicate the bug that the issues discusses. \n   If the issue includes\
+      \ code for reproducing the bug, we recommend that you re-implement that in your\
+      \ environment, and run it to make sure you can reproduce the bug.\n   Then start\
+      \ trying to fix it.\n   When you think you've fixed the bug, re-run the bug\
+      \ reproduction script to make sure that the bug has indeed been fixed.\n   \n\
+      \   If the bug reproduction script does not print anything when it successfully\
+      \ runs, we recommend adding a print(\"Script completed successfully, no errors.\"\
+      ) command at the end of the file,\n   so that you can be sure that the script\
+      \ indeed ran fine all the way through. \n\n2. If you run a command and it doesn't\
+      \ work, try running a different command. A command that did not work once will\
+      \ not work the second time unless you modify it!\n\n3. If you open a file and\
+      \ need to get to an area around a specific line that is not in the first 100\
+      \ lines, say line 583, don't just use the scroll_down command multiple times.\
+      \ Instead, use the goto 583 command. It's much quicker. \n   \n4. If the bug\
+      \ reproduction script requires inputting/reading a specific file, such as buggy-input.png,\
+      \ and you'd like to understand how to input that file, conduct a search in the\
+      \ existing repo code, to see whether someone else has already done that. Do\
+      \ this by running the command: find_file \"buggy-input.png\" If that doensn't\
+      \ work, use the linux 'find' command. \n\n5. Always make sure to look at the\
+      \ currently open file and the current working directory (which appears right\
+      \ after the currently open file). The currently open file might be in a different\
+      \ directory than the working directory! Note that some commands, such as 'create',\
+      \ open files, so they might change the current  open file.\n\n6. When editing\
+      \ files, it is easy to accidentally specify a wrong line number or to write\
+      \ code with incorrect indentation. Always check the code after you issue an\
+      \ edit to make sure that it reflects what you wanted to accomplish. If it didn't,\
+      \ issue another command to fix it.\n   \n\n(Open file: {open_file})\n(Current\
+      \ directory: {working_dir})\nbash-$"
+    next_step_no_output_template: |-
+      Your command ran successfully and did not produce any output.
+      (Open file: {open_file})
+      (Current directory: {working_dir})
+      bash-$
+    next_step_template: |-
+      {observation}
+      (Open file: {open_file})
+      (Current directory: {working_dir})
+      bash-$
+    parse_command: {}
+    parse_function: {}
+    put_demos_in_history: false
+    strategy_template: null
+    submit_command: submit
+    subroutine_types: []
+    system_template: "SETTING: You are an autonomous programmer, and you're working\
+      \ directly in the command line with a special interface.\n\nThe special interface\
+      \ consists of a file editor that shows you {WINDOW} lines of a file at a time.\n\
+      In addition to typical bash commands, you can also use the following commands\
+      \ to help you navigate and edit files.\n\nCOMMANDS:\n{command_docs}\n\nPlease\
+      \ note that THE EDIT COMMAND REQUIRES PROPER INDENTATION. \nIf you'd like to\
+      \ add the line '        print(x)' you must fully write that out, with all those\
+      \ spaces before the code! Indentation is important and code that is not indented\
+      \ correctly will fail and require fixing before it can be run.\n\nRESPONSE FORMAT:\n\
+      Your shell prompt is formatted as follows:\n(Open file: <path>) <cwd> $\n\n\
+      You need to format your output using two fields; discussion and command.\nYour\
+      \ output should always include _one_ discussion and _one_ command field EXACTLY\
+      \ as in the following example:\nDISCUSSION\nFirst I'll start by using ls to\
+      \ see what files are in the current directory. Then maybe we can look at some\
+      \ relevant files to see what they look like.\n```\nls -a\n```\n\nYou should\
+      \ only include a *SINGLE* command in the command section and then wait for a\
+      \ response from the shell before continuing with more discussion and commands.\
+      \ Everything you include in the DISCUSSION section will be saved for future\
+      \ reference.\nIf you'd like to issue two commands at once, PLEASE DO NOT DO\
+      \ THAT! Please instead first submit just the first command, and then after receiving\
+      \ a response you'll be able to issue the second command. \nYou're free to use\
+      \ any other bash commands you want (e.g. find, grep, cat, ls, cd) in addition\
+      \ to the special commands listed above.\nHowever, the environment does NOT support\
+      \ interactive session commands (e.g. python, vim), so please do not invoke them."
+    util_functions:
+    - arguments: null
+      code: '_print() {    local total_lines=$(awk ''END {print NR}'' $CURRENT_FILE)    echo
+        "[File: $(realpath $CURRENT_FILE) ($total_lines lines total)]"    lines_above=$(jq
+        -n "$CURRENT_LINE - $WINDOW/2" | jq ''[0, .] | max | floor'')    lines_below=$(jq
+        -n "$total_lines - $CURRENT_LINE - $WINDOW/2" | jq ''[0, .] | max | round'')    if
+        [ $lines_above -gt 0 ]; then        echo "($lines_above more lines above)"    fi    cat
+        $CURRENT_FILE | grep -n $ | head -n $(jq -n "[$CURRENT_LINE + $WINDOW/2, $WINDOW/2]
+        | max | floor") | tail -n $(jq -n "$WINDOW")    if [ $lines_below -gt 0 ];
+        then        echo "($lines_below more lines below)"    fi}'
+      docstring: null
+      end_name: null
+      name: _print
+      signature: _print
+    - arguments: null
+      code: _constrain_line() {    if [ -z "$CURRENT_FILE" ]    then        echo "No
+        file open. Use the open command first."        return    fi    local max_line=$(awk
+        'END {print NR}' $CURRENT_FILE)    local half_window=$(jq -n "$WINDOW/2" |
+        jq 'floor')    export CURRENT_LINE=$(jq -n "[$CURRENT_LINE, $max_line - $half_window]
+        | min")    export CURRENT_LINE=$(jq -n "[$CURRENT_LINE, $half_window] | max")}
+      docstring: null
+      end_name: null
+      name: _constrain_line
+      signature: _constrain_line
+  config_file: config/anthropic_filemap.yaml
+  model:
+    host_url: localhost:11434
+    model_name: gpt4
+    per_instance_cost_limit: 3.0
+    replay_path: null
+    temperature: 0.0
+    top_p: 0.95
+    total_cost_limit: 0.0
+environment:
+  base_commit: null
+  container_name: null
+  data_path: tests/test_data/data_sources/swe-bench-dev-easy_first_only.json
+  environment_setup: null
+  image_name: sweagent/swe-agent:latest
+  install_environment: true
+  no_mirror: false
+  repo_path: ''
+  split: dev
+  timeout: 35
+  verbose: true
+instance_filter: .*
+raise_exceptions: false
+skip_existing: true
+suffix: ''

package/python/tests/test_data/trajectories/gpt4__swe-bench-dev-easy_first_only__default__t-0.00__p-0.95__c-3.00__install-1/patches/pydicom__pydicom-1458.patch

@@ -0,0 +1,18 @@
+
+diff --git a/pydicom/pixel_data_handlers/numpy_handler.py b/pydicom/pixel_data_handlers/numpy_handler.py
+index 8e8d319ae..6a1221b72 100644
+--- a/pydicom/pixel_data_handlers/numpy_handler.py
++++ b/pydicom/pixel_data_handlers/numpy_handler.py
+@@ -285,9 +285,10 @@ def get_pixeldata(ds: "Dataset", read_only: bool = False) -> "np.ndarray":
+         )
+
+     required_elements = [
+-        'BitsAllocated', 'Rows', 'Columns', 'PixelRepresentation',
+-        'SamplesPerPixel', 'PhotometricInterpretation'
++        'BitsAllocated', 'Rows', 'Columns', 'SamplesPerPixel', 'PhotometricInterpretation'
+     ]
++    if 'PixelData' in ds:
++        required_elements.append('PixelRepresentation')
+     missing = [elem for elem in required_elements if elem not in ds]
+     if missing:
+         raise AttributeError(