@elixir-cloud/trs-filer 2.0.0-alpha.1

package/dist/events/ecc-tool-create-error.d.ts

@@ -0,0 +1,6 @@
+export type EccToolCreateErrorEvent = CustomEvent<Record<string, any>>;
+declare global {
+    interface GlobalEventHandlersEventMap {
+        "ecc-tool-create-error": EccToolCreateErrorEvent;
+    }
+}

package/dist/events/ecc-tool-create-success.d.ts

@@ -0,0 +1,6 @@
+export type EccToolCreateSuccessEvent = CustomEvent<Record<string, any>>;
+declare global {
+    interface GlobalEventHandlersEventMap {
+        "ecc-tool-create-success": EccToolCreateSuccessEvent;
+    }
+}

package/dist/events/ecc-tool-create-validation-error.d.ts

@@ -0,0 +1,6 @@
+export type EccToolCreateValidationErrorEvent = CustomEvent<Record<string, any>>;
+declare global {
+    interface GlobalEventHandlersEventMap {
+        "ecc-tool-create-validation-error": EccToolCreateValidationErrorEvent;
+    }
+}

package/dist/events/ecc-tool-created.d.ts

@@ -0,0 +1,6 @@
+export type EccToolCreatedEvent = CustomEvent<Record<string, any>>;
+declare global {
+    interface GlobalEventHandlersEventMap {
+        "ecc-tool-created": EccToolCreatedEvent;
+    }
+}

package/dist/events/ecc-tools-change.d.ts

@@ -0,0 +1,6 @@
+export type EccToolsChangeEvent = CustomEvent<Record<string, any>>;
+declare global {
+    interface GlobalEventHandlersEventMap {
+        "ecc-tools-change": EccToolsChangeEvent;
+    }
+}

package/dist/events/ecc-tools-click.d.ts

@@ -0,0 +1,6 @@
+export type EccToolsClickEvent = CustomEvent<Record<string, any>>;
+declare global {
+    interface GlobalEventHandlersEventMap {
+        "ecc-tools-click": EccToolsClickEvent;
+    }
+}

package/dist/events/index.d.ts

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+export type { EccToolsChangeEvent } from "./ecc-tools-change.js";
+export type { EccToolsClickEvent } from "./ecc-tools-click.js";
+export type { EccToolCreatedEvent } from "./ecc-tool-created.js";
+export type { EccToolCreateErrorEvent } from "./ecc-tool-create-error.js";
+export type { EccToolCreateSuccessEvent } from "./ecc-tool-create-success.js";
+export type { EccToolCreateValidationErrorEvent } from "./ecc-tool-create-validation-error.js";

package/dist/global.d.ts

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+export declare const GlobalStyles: import("lit").CSSResult;

package/dist/index.d.ts

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+import "./components/index.js";

package/dist/index.js

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+import './chunks/chunk.3WU6NPWM.js';
+import './chunks/chunk.C5TPOPDW.js';
+import './chunks/chunk.5A4EA5NE.js';
+import './chunks/chunk.Q5GOJN3Z.js';

package/dist/providers/index.d.ts

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+export { TrsFilerProvider } from "./trs-filer-provider.js";
+export { RestTrsFilerProvider } from "./rest-trs-filer-provider.js";
+export type { DescriptorType, DescriptorTypeWithPlain, DescriptorTypeVersion, ImageType, Tool, ToolClass, ToolVersion, ToolFile, FileWrapper, Checksum, ImageData, Error, TrsProvider, } from "./trs-filer-provider.js";
+export type { TypeRegister, ToolRegister, ToolClassRegister, ToolClassRegisterId, ToolVersionRegister, ToolVersionRegisterId, ToolFileRegister, FileWrapperRegister, FilesRegister, ChecksumRegister, ImageDataRegister, Service, ServiceRegister, ServiceType, ServiceTypeRegister, Organization, } from "./trs-filer-provider.js";

package/dist/providers/rest-trs-filer-provider.d.ts

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+import { TrsFilerProvider, DescriptorType, Tool, ToolClass, ToolFile, ToolVersion, FileWrapper, ToolRegister, ToolClassRegister, ToolVersionRegister } from "./trs-filer-provider.js";
+/**
+ * Implementation of the TrsFilerProvider interface using direct REST API calls
+ * This class combines the functionality of TrsAPI and RestTrsProvider for TRS-Filer
+ */
+export declare class RestTrsFilerProvider implements TrsFilerProvider {
+    readonly baseUrl: string;
+    constructor(baseUrl: string);
+    getToolClasses(): Promise<ToolClass[]>;
+    getToolsList(limit: number, offset: number, filters: Record<string, string | undefined | boolean>, query: string): Promise<Tool[]>;
+    getTool(url: string, id: string): Promise<Tool>;
+    getToolVersions(url: string, id: string): Promise<ToolVersion[]>;
+    getToolVersion(url: string, id: string, versionId: string): Promise<ToolVersion>;
+    getToolFiles(url: string, id: string, version: string, descriptorType: DescriptorType, format?: "zip"): Promise<ToolFile[]>;
+    getToolDescriptor(url: string, id: string, version: string, descriptorType: DescriptorType): Promise<FileWrapper>;
+    getToolDescriptorByPath(url: string, id: string, version: string, descriptorType: DescriptorType, path: string): Promise<FileWrapper>;
+    getContainerfile(url: string, id: string, version: string): Promise<FileWrapper[]>;
+    getToolTests(url: string, id: string, version: string, descriptorType: DescriptorType): Promise<FileWrapper[]>;
+    createTool(tool: ToolRegister): Promise<string>;
+    createToolWithId(id: string, tool: ToolRegister): Promise<string>;
+    createToolVersion(toolId: string, version: ToolVersionRegister): Promise<string>;
+    createToolVersionWithId(toolId: string, versionId: string, version: ToolVersionRegister): Promise<string>;
+    createToolClass(toolClass: ToolClassRegister): Promise<string>;
+    createToolClassWithId(id: string, toolClass: ToolClassRegister): Promise<string>;
+}

package/dist/providers/trs-filer-provider.d.ts

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+/**
+ * Types for the GA4GH TRS API based on OpenAPI specification v2.0.1
+ */
+import { TrsProvider, DescriptorType, DescriptorTypeWithPlain, DescriptorTypeVersion, ImageType, Tool, ToolClass, ToolVersion, ToolFile, FileWrapper, Checksum, ImageData, Error } from "@elixir-cloud/trs/providers";
+/**
+ * TRS-Filer specific types that extend the base GA4GH TRS types
+ */
+export interface ChecksumRegister {
+    checksum: string;
+    type: string;
+}
+export interface ImageDataRegister {
+    registry_host?: string;
+    image_name?: string;
+    size?: number;
+    updated?: string;
+    checksum?: ChecksumRegister[];
+    image_type?: ImageType;
+}
+export interface ToolClassRegister {
+    name: string;
+    description?: string;
+}
+export interface ToolClassRegisterId {
+    id: string;
+    name: string;
+    description?: string;
+}
+export interface ToolFileRegister {
+    path: string;
+    file_type: "TEST_FILE" | "PRIMARY_DESCRIPTOR" | "SECONDARY_DESCRIPTOR" | "CONTAINERFILE" | "OTHER";
+}
+export interface FileWrapperRegister {
+    content?: string;
+    url?: string;
+    checksum?: ChecksumRegister[];
+}
+export interface FilesRegister {
+    tool_file: ToolFileRegister;
+    file_wrapper: FileWrapperRegister;
+    type: TypeRegister;
+}
+export type TypeRegister = DescriptorType | ImageType;
+export interface ToolVersionRegister {
+    author?: string[];
+    descriptor_type?: DescriptorType[];
+    files?: FilesRegister[];
+    images?: ImageDataRegister[];
+    included_apps?: string[];
+    is_production?: boolean;
+    name?: string;
+    signed?: boolean;
+    verified?: boolean;
+    verified_source?: string[];
+}
+export interface ToolVersionRegisterId {
+    id: string;
+    author?: string[];
+    descriptor_type?: DescriptorType[];
+    files?: FilesRegister[];
+    images?: ImageDataRegister[];
+    included_apps?: string[];
+    is_production?: boolean;
+    name?: string;
+    signed?: boolean;
+    verified?: boolean;
+    verified_source?: string[];
+}
+export interface ToolRegister {
+    aliases?: string[];
+    checker_url?: string;
+    description?: string;
+    has_checker?: boolean;
+    name?: string;
+    organization: string;
+    toolclass: ToolClassRegisterId;
+    versions: (ToolVersionRegister | ToolVersionRegisterId)[];
+}
+export interface ServiceType {
+    group: string;
+    artifact: string;
+    version: string;
+}
+export interface ServiceTypeRegister {
+    group: string;
+    artifact: string;
+    version: string;
+}
+export interface Organization {
+    name: string;
+    url: string;
+}
+export interface Service {
+    id: string;
+    name: string;
+    type: ServiceType;
+    organization: Organization;
+    version: string;
+    description?: string;
+    contactUrl?: string;
+    documentationUrl?: string;
+    createdAt?: string;
+    updatedAt?: string;
+    environment?: string;
+}
+export interface ServiceRegister {
+    id: string;
+    name: string;
+    type: ServiceTypeRegister;
+    organization: Organization;
+    version: string;
+    description?: string;
+    contactUrl?: string;
+    documentationUrl?: string;
+    createdAt?: string;
+    updatedAt?: string;
+    environment?: string;
+}
+/**
+ * Interface defining the operations required for TRS-Filer data providers
+ * Extends the base TrsProvider with TRS-Filer specific creation and deletion operations
+ */
+export interface TrsFilerProvider extends TrsProvider {
+    createTool(tool: ToolRegister): Promise<string>;
+    createToolWithId(id: string, tool: ToolRegister): Promise<string>;
+    createToolVersion(toolId: string, version: ToolVersionRegister): Promise<string>;
+    createToolVersionWithId(toolId: string, versionId: string, version: ToolVersionRegister): Promise<string>;
+    createToolClass(toolClass: ToolClassRegister): Promise<string>;
+    createToolClassWithId(id: string, toolClass: ToolClassRegister): Promise<string>;
+    deleteTool?(id: string): Promise<string>;
+    deleteToolVersion?(toolId: string, versionId: string): Promise<string>;
+    deleteToolClass?(id: string): Promise<string>;
+    getServiceInfo?(): Promise<Service>;
+    createOrUpdateServiceInfo?(service: ServiceRegister): Promise<void>;
+}
+export { TrsProvider, DescriptorType, DescriptorTypeWithPlain, DescriptorTypeVersion, ImageType, Tool, ToolClass, ToolVersion, ToolFile, FileWrapper, Checksum, ImageData, Error };

package/dist/react/ecc-client-elixir-trs-tool-create/index.d.ts

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+import { ECCClientElixirTrsToolCreate as Component } from "../../components/tool-create/tool-create.js";
+import type { EventName } from "@lit/react";
+import type { EccToolCreateValidationErrorEvent } from "../../events/index.js";
+import type { EccToolCreateErrorEvent } from "../../events/index.js";
+import type { EccToolCreateSuccessEvent } from "../../events/index.js";
+import type { EccToolCreatedEvent } from "../../events/index.js";
+export type { EccToolCreateValidationErrorEvent } from "../../events/index.js";
+export type { EccToolCreateErrorEvent } from "../../events/index.js";
+export type { EccToolCreateSuccessEvent } from "../../events/index.js";
+export type { EccToolCreatedEvent } from "../../events/index.js";
+/**
+ * @summary Component for creating new tools in TRS-Filer
+ * @since 2.0.0
+ *
+ * @property {string} baseUrl - Base URL of the TRS instance/gateway
+ * @property {TrsProvider} provider - Custom data provider (optional, overrides baseUrl)
+ *
+ * @fires ecc-tool-created - Fired when a tool is successfully created
+ * @fires ecc-tool-create-error - Fired when tool creation fails
+ * @fires ecc-tool-create-success - Fired when a tool is successfully created (includes success message)
+ * @fires ecc-tool-create-validation-error - Fired when there are validation errors during tool creation
+ */
+declare const reactWrapper: import("@lit/react").ReactWebComponent<Component, {
+    onEccToolCreateValidationError: EventName<EccToolCreateValidationErrorEvent>;
+    onEccToolCreateError: EventName<EccToolCreateErrorEvent>;
+    onEccToolCreateSuccess: EventName<EccToolCreateSuccessEvent>;
+    onEccToolCreated: EventName<EccToolCreatedEvent>;
+}>;
+export default reactWrapper;

package/dist/react/ecc-client-elixir-trs-tool-create/index.js

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+export { ecc_client_elixir_trs_tool_create_default as default } from '../../chunks/chunk.ULOGEPYW.js';
+import '../../chunks/chunk.5A4EA5NE.js';
+import '../../chunks/chunk.Q5GOJN3Z.js';

package/dist/react/index.d.ts

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+export { default as ECCClientElixirTrsToolCreate } from './ecc-client-elixir-trs-tool-create/index.js';

package/dist/react/index.js

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+export { ecc_client_elixir_trs_tool_create_default as ECCClientElixirTrsToolCreate } from '../chunks/chunk.ULOGEPYW.js';
+import '../chunks/chunk.5A4EA5NE.js';
+import '../chunks/chunk.Q5GOJN3Z.js';

package/dist/vscode.html-custom-data.json

@@ -0,0 +1,17 @@
+{
+  "$schema": "https://raw.githubusercontent.com/microsoft/vscode-html-languageservice/main/docs/customData.schema.json",
+  "version": 1.1,
+  "tags": [
+    {
+      "name": "ecc-client-elixir-trs-tool-create",
+      "description": "Component for creating new tools in TRS-Filer\n---\n\n\n### **Events:**\n - **ecc-tool-create-validation-error** - Fired when there are validation errors during tool creation\n- **ecc-tool-create-error** - Fired when tool creation fails\n- **ecc-tool-create-success** - Fired when a tool is successfully created (includes success message)\n- **ecc-tool-created** - Fired when a tool is successfully created",
+      "attributes": [],
+      "references": [
+        {
+          "name": "Documentation",
+          "url": "https://elixir-cloud-components.vercel.app/design/components/ecc-client-elixir-trs-tool-create.html"
+        }
+      ]
+    }
+  ]
+}

package/dist/web-types.json

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+{
+  "$schema": "https://raw.githubusercontent.com/JetBrains/web-types/master/schema/web-types.json",
+  "name": "@elixir-cloud/trs-filer",
+  "version": "2.0.0-alpha.1",
+  "description-markup": "markdown",
+  "contributions": {
+    "html": {
+      "elements": [
+        {
+          "name": "ecc-client-elixir-trs-tool-create",
+          "description": "Component for creating new tools in TRS-Filer\n---\n\n\n### **Events:**\n - **ecc-tool-create-validation-error** - Fired when there are validation errors during tool creation\n- **ecc-tool-create-error** - Fired when tool creation fails\n- **ecc-tool-create-success** - Fired when a tool is successfully created (includes success message)\n- **ecc-tool-created** - Fired when a tool is successfully created",
+          "doc-url": "",
+          "attributes": [],
+          "events": [
+            {
+              "name": "ecc-tool-create-validation-error",
+              "description": "Fired when there are validation errors during tool creation"
+            },
+            {
+              "name": "ecc-tool-create-error",
+              "description": "Fired when tool creation fails"
+            },
+            {
+              "name": "ecc-tool-create-success",
+              "description": "Fired when a tool is successfully created (includes success message)"
+            },
+            {
+              "name": "ecc-tool-created",
+              "description": "Fired when a tool is successfully created"
+            }
+          ],
+          "js": {
+            "properties": [
+              {
+                "name": "baseUrl",
+                "description": "Base URL of the TRS instance/gateway",
+                "value": { "type": "string" }
+              },
+              {
+                "name": "provider",
+                "description": "Custom data provider (optional, overrides baseUrl)",
+                "value": { "type": "TrsProvider" }
+              },
+              { "name": "toolClasses", "value": { "type": "ToolClass[]" } },
+              { "name": "loading", "value": { "type": "boolean" } },
+              { "name": "error", "value": { "type": "string | null" } },
+              { "name": "success", "value": { "type": "string | null" } },
+              {
+                "name": "formData",
+                "value": {
+                  "type": "{\n    name: string;\n    organization: string;\n    description: string;\n    toolClassId: string;\n    aliases: string[];\n    checkerUrl: string;\n    hasChecker: boolean;\n    customToolId: string;\n    useCustomId: boolean;\n  }"
+                }
+              },
+              {
+                "name": "versions",
+                "value": {
+                  "type": "{\n    name: string;\n    author: string[];\n    descriptorTypes: DescriptorType[];\n    isProduction: boolean;\n    signed: boolean;\n    verified: boolean;\n    verifiedSource: string[];\n    includedApps: string[];\n    files: {\n      path: string;\n      fileType: FileType;\n      content?: string;\n      file?: File;\n      checksumType: string;\n      checksumValue: string;\n      descriptorType?: DescriptorType;\n    }[];\n    images: ImageDataRegister[];\n    customVersionId: string;\n    useCustomVersionId: boolean;\n  }[]"
+                }
+              },
+              {
+                "name": "_provider",
+                "value": { "type": "TrsFilerProvider | null" }
+              },
+              {
+                "name": "activeFileIndex",
+                "value": { "type": "{ [versionIndex: number]: number }" }
+              },
+              {
+                "name": "activeDescriptorType",
+                "value": {
+                  "type": "{\n    [versionIndex: number]: DescriptorType | \"ALL\";\n  }"
+                }
+              },
+              { "name": "loadToolClasses", "value": {} },
+              { "name": "handleInputChange", "value": {} },
+              { "name": "handleArrayInputChange", "value": {} },
+              { "name": "handleVersionChange", "value": {} },
+              { "name": "addVersion", "value": {} },
+              { "name": "removeVersion", "value": {} },
+              { "name": "addFileToVersion", "value": {} },
+              { "name": "removeFileFromVersion", "value": {} },
+              { "name": "handleFileUpload", "value": {} },
+              { "name": "handleBulkFileUpload", "value": {} },
+              { "name": "handleZipFileUpload", "value": {} },
+              { "name": "extractFileFromZip", "value": {} },
+              { "name": "isTextFile", "value": {} },
+              { "name": "getDefaultFileType", "value": {} },
+              { "name": "getDefaultDescriptorType", "value": {} },
+              { "name": "getContainerImageType", "value": {} },
+              { "name": "getFileExtension", "value": {} },
+              { "name": "handleFileFieldChange", "value": {} },
+              { "name": "addImageToVersion", "value": {} },
+              { "name": "removeImageFromVersion", "value": {} },
+              { "name": "handleSubmit", "value": {} },
+              { "name": "resetForm", "value": {} },
+              { "name": "renderBasicFields", "value": {} },
+              { "name": "renderAdvancedFields", "value": {} },
+              { "name": "renderVersions", "value": {} },
+              { "name": "renderVersionContent", "value": {} },
+              { "name": "renderFilesLayout", "value": {} },
+              { "name": "renderFileContentArea", "value": {} },
+              { "name": "renderFileInput", "value": {} },
+              { "name": "getVersionTags", "value": {} },
+              { "name": "handleVersionTagsChange", "value": {} }
+            ],
+            "events": [
+              {
+                "name": "ecc-tool-create-validation-error",
+                "description": "Fired when there are validation errors during tool creation"
+              },
+              {
+                "name": "ecc-tool-create-error",
+                "description": "Fired when tool creation fails"
+              },
+              {
+                "name": "ecc-tool-create-success",
+                "description": "Fired when a tool is successfully created (includes success message)"
+              },
+              {
+                "name": "ecc-tool-created",
+                "description": "Fired when a tool is successfully created"
+              }
+            ]
+          }
+        }
+      ]
+    }
+  }
+}

package/package.json

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+{
+  "name": "@elixir-cloud/trs-filer",
+  "description": "Web Component for interacting with Elixir TRS Filer",
+  "license": "Apache-2.0",
+  "version": "2.0.0-alpha.1",
+  "type": "module",
+  "main": "./dist/index.js",
+  "module": "./dist/index.mjs",
+  "types": "./dist/index.d.ts",
+  "exports": {
+    ".": {
+      "types": "./dist/index.d.ts",
+      "import": "./dist/index.js"
+    },
+    "./custom-elements.json": "./dist/custom-elements.json",
+    "./components/*": "./dist/components/*",
+    "./react": "./dist/react/index.js",
+    "./react/*": "./dist/react/*",
+    "./events": "./dist/events/index.js",
+    "./events/*": "./dist/events/*",
+    "./providers": "./dist/providers/index.js",
+    "./providers/*": "./dist/providers/*"
+  },
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/elixir-cloud-aai/cloud-components.git"
+  },
+  "customElements": "dist/custom-elements.json",
+  "files": [
+    "dist",
+    "README.md",
+    "package.json",
+    "LICENSE"
+  ],
+  "scripts": {
+    "analyze": "cem analyze --litelement",
+    "build:tailwind": "node ../../scripts/tailwind/index.js",
+    "build": "node ../../scripts/tailwind/index.js && node ../../scripts/build.js -p ecc-client-elixir-trs-filer-",
+    "dev": "concurrently -r \"node ../../scripts/tailwind/index.js --watch\" \"node ../../scripts/build.js -p ecc-client-elixir-trs-filer- --watch\" \"wds\"",
+    "clean": "rm -rf dist node_modules custom-elements-manifest.config.js src/output.css src/tailwind.ts",
+    "test": "wtr --coverage",
+    "test:watch": "wtr --watch",
+    "lint": "npx eslint .",
+    "lint:fix": "npm run lint -- --fix",
+    "prepublish": "npm run build"
+  },
+  "dependencies": {
+    "@elixir-cloud/design": "2.0.0-alpha.6",
+    "@elixir-cloud/trs": "2.0.0-alpha.9",
+    "@lit/react": "^1.0.2",
+    "@progress/jszip-esm": "^1.0.4",
+    "lit": "^2.8.0"
+  },
+  "devDependencies": {
+    "@custom-elements-manifest/analyzer": "^0.4.17",
+    "@elixir-cloud/eslint-config": "*",
+    "@open-wc/eslint-config": "^9.2.1",
+    "@open-wc/testing": "^3.1.6",
+    "@tailwindcss/cli": "^4.1.4",
+    "@types/jszip": "^3.4.0",
+    "@typescript-eslint/eslint-plugin": "^5.48.0",
+    "@typescript-eslint/parser": "^5.48.0",
+    "@web/dev-server": "^0.1.34",
+    "@web/dev-server-esbuild": "^0.3.0",
+    "@web/test-runner": "^0.19.0",
+    "commander": "*",
+    "concurrently": "^5.3.0",
+    "custom-element-jet-brains-integration": "*",
+    "custom-element-vs-code-integration": "*",
+    "eslint": "^8.31.0",
+    "eslint-config-prettier": "^8.3.0",
+    "react": "*",
+    "tailwindcss": "^4.1.4",
+    "tslib": "^2.3.1",
+    "tsup": "^7.2.0",
+    "tw-animate-css": "^1.2.6",
+    "typescript": "*"
+  }
+}