@eldrforge/kodrdriv 0.0.33 → 0.0.38

package/dist/commands/link.js

@@ -1,208 +1,226 @@
 import path from 'path';
-import yaml from 'js-yaml';
-import { getLogger } from '../logging.js';
+import { ValidationError, CommandError } from '../error/CommandErrors.js';
+import { getLogger, getDryRunLogger } from '../logging.js';
 import { create } from '../util/storage.js';
-import { run } from '../util/child.js';
+import { PerformanceTimer, findAllPackageJsonFiles, scanDirectoryForPackages } from '../util/performance.js';
+import { smartNpmInstall } from '../util/npmOptimizations.js';
 
-const scanDirectoryForPackages = async (rootDir, storage)=>{
+const findPackagesToLink = async (scopeRoots, storage)=>{
     const logger = getLogger();
-    const packageMap = new Map(); // packageName -> relativePath
-    const absoluteRootDir = path.resolve(process.cwd(), rootDir);
-    logger.verbose(`Scanning directory for packages: ${absoluteRootDir}`);
-    try {
-        // Use single stat call to check if directory exists and is directory
-        const rootStat = await storage.exists(absoluteRootDir);
-        if (!rootStat) {
-            logger.verbose(`Root directory does not exist: ${absoluteRootDir}`);
-            return packageMap;
-        }
-        if (!await storage.isDirectory(absoluteRootDir)) {
-            logger.verbose(`Root path is not a directory: ${absoluteRootDir}`);
-            return packageMap;
-        }
-        // Get all items in the root directory
-        const items = await storage.listFiles(absoluteRootDir);
-        // Process directories in batches to avoid overwhelming the filesystem
-        const directories = [];
-        for (const item of items){
-            const itemPath = path.join(absoluteRootDir, item);
-            try {
-                // Quick check if it's a directory without logging
-                if (await storage.isDirectory(itemPath)) {
-                    directories.push({
-                        item,
-                        itemPath
-                    });
-                }
-            } catch (error) {
-                continue;
-            }
-        }
-        logger.verbose(`Found ${directories.length} subdirectories to check for packages`);
-        // Check each directory for package.json
-        for (const { item, itemPath } of directories){
-            const packageJsonPath = path.join(itemPath, 'package.json');
-            try {
-                if (await storage.exists(packageJsonPath)) {
-                    const packageJsonContent = await storage.readFile(packageJsonPath, 'utf-8');
-                    const packageJson = JSON.parse(packageJsonContent);
-                    if (packageJson.name) {
-                        const relativePath = path.relative(process.cwd(), itemPath);
-                        packageMap.set(packageJson.name, relativePath);
-                        logger.debug(`Found package: ${packageJson.name} at ${relativePath}`);
-                    }
-                }
-            } catch (error) {
-                // Skip directories with unreadable or invalid package.json
-                logger.debug(`Skipped ${packageJsonPath}: ${error.message || error}`);
-                continue;
-            }
-        }
-    } catch (error) {
-        logger.warn(`Failed to read directory ${absoluteRootDir}: ${error}`);
-    }
-    return packageMap;
-};
-const findPackagesByScope = async (dependencies, scopeRoots, storage)=>{
-    const logger = getLogger();
-    const workspacePackages = new Map();
-    logger.silly(`Checking dependencies against scope roots: ${JSON.stringify(scopeRoots)}`);
-    // First, scan all scope roots to build a comprehensive map of available packages
-    const allPackages = new Map(); // packageName -> relativePath
-    for (const [scope, rootDir] of Object.entries(scopeRoots)){
+    const timer = PerformanceTimer.start(logger, 'Finding packages to link');
+    const packagesToLink = new Map();
+    logger.silly(`Finding packages to link from scope roots: ${JSON.stringify(scopeRoots)}`);
+    // Scan all scope roots to build a comprehensive map of packages that can be linked
+    const scopeTimer = PerformanceTimer.start(logger, 'Scanning all scope roots for linkable packages');
+    const allScopePackages = new Map(); // packageName -> relativePath
+    // Process all scopes in parallel for better performance
+    const scopePromises = Object.entries(scopeRoots).map(async ([scope, rootDir])=>{
         logger.verbose(`Scanning scope ${scope} at root directory: ${rootDir}`);
         const scopePackages = await scanDirectoryForPackages(rootDir, storage);
         // Add packages from this scope to the overall map
+        const scopeResults = [];
         for (const [packageName, packagePath] of scopePackages){
             if (packageName.startsWith(scope)) {
-                allPackages.set(packageName, packagePath);
-                logger.debug(`Registered package: ${packageName} -> ${packagePath}`);
+                scopeResults.push([
+                    packageName,
+                    packagePath
+                ]);
+                logger.debug(`Linkable package: ${packageName} -> ${packagePath}`);
             }
         }
-    }
-    // Now check each dependency against our discovered packages
-    for (const [depName, depVersion] of Object.entries(dependencies)){
-        logger.debug(`Processing dependency: ${depName}@${depVersion}`);
-        if (allPackages.has(depName)) {
-            const packagePath = allPackages.get(depName);
-            workspacePackages.set(depName, packagePath);
-            logger.verbose(`Found sibling package: ${depName} at ${packagePath}`);
+        return scopeResults;
+    });
+    const allScopeResults = await Promise.all(scopePromises);
+    // Flatten results
+    for (const scopeResults of allScopeResults){
+        for (const [packageName, packagePath] of scopeResults){
+            allScopePackages.set(packageName, packagePath);
         }
     }
-    return workspacePackages;
+    scopeTimer.end(`Scanned ${Object.keys(scopeRoots).length} scope roots, found ${allScopePackages.size} packages`);
+    // Now we have all scope packages, we can resolve the ones we want to link
+    for (const [packageName, packagePath] of allScopePackages){
+        packagesToLink.set(packageName, packagePath);
+    }
+    timer.end(`Found ${packagesToLink.size} packages to link`);
+    return packagesToLink;
 };
-const readCurrentWorkspaceFile = async (workspaceFilePath, storage)=>{
-    if (await storage.exists(workspaceFilePath)) {
+const readLinkBackup = async (storage, logger)=>{
+    const backupPath = path.join(process.cwd(), '.kodrdriv-link-backup.json');
+    if (await storage.exists(backupPath)) {
         try {
-            const content = await storage.readFile(workspaceFilePath, 'utf-8');
-            return yaml.load(content) || {};
+            const content = await storage.readFile(backupPath, 'utf-8');
+            return JSON.parse(content);
         } catch (error) {
-            throw new Error(`Failed to parse existing workspace file: ${error}`);
+            // Log warning but continue with empty backup instead of throwing
+            if (logger) {
+                logger.warn(`Failed to parse link backup file: ${error}`);
+            }
+            return {};
         }
     }
     return {};
 };
-const writeWorkspaceFile = async (workspaceFilePath, config, storage)=>{
-    const yamlContent = yaml.dump(config, {
-        indent: 2,
-        lineWidth: -1,
-        noRefs: true,
-        sortKeys: false
-    });
-    await storage.writeFile(workspaceFilePath, yamlContent, 'utf-8');
+const writeLinkBackup = async (backup, storage)=>{
+    const backupPath = path.join(process.cwd(), '.kodrdriv-link-backup.json');
+    await storage.writeFile(backupPath, JSON.stringify(backup, null, 2), 'utf-8');
 };
-const execute = async (runConfig)=>{
-    var _runConfig_link, _runConfig_link1, _runConfig_link2;
+const updatePackageJson = async (packageJsonLocation, packagesToLink, backup, storage)=>{
     const logger = getLogger();
+    let linkedCount = 0;
+    const { packageJson, path: packageJsonPath, relativePath } = packageJsonLocation;
+    // Process dependencies, devDependencies, and peerDependencies
+    const depTypes = [
+        'dependencies',
+        'devDependencies',
+        'peerDependencies'
+    ];
+    for (const depType of depTypes){
+        const dependencies = packageJson[depType];
+        if (!dependencies) continue;
+        for (const [packageName, targetPath] of packagesToLink){
+            if (dependencies[packageName]) {
+                // Backup original version before linking
+                const backupKey = `${relativePath}:${packageName}`;
+                if (!backup[backupKey]) {
+                    backup[backupKey] = {
+                        originalVersion: dependencies[packageName],
+                        dependencyType: depType,
+                        relativePath
+                    };
+                }
+                // Update to file: dependency
+                const targetAbsolutePath = path.resolve(process.cwd(), targetPath);
+                const fileReferencePath = path.relative(path.dirname(packageJsonPath), targetAbsolutePath);
+                dependencies[packageName] = `file:${fileReferencePath}`;
+                linkedCount++;
+                logger.verbose(`Linked ${relativePath}/${depType}.${packageName}: ${backup[backupKey].originalVersion} -> file:${fileReferencePath}`);
+            }
+        }
+    }
+    // NOTE: Don't write the file here - let the caller handle all modifications
+    return linkedCount;
+};
+const executeInternal = async (runConfig)=>{
+    var _runConfig_link, _runConfig_link1;
+    const isDryRun = runConfig.dryRun || ((_runConfig_link = runConfig.link) === null || _runConfig_link === void 0 ? void 0 : _runConfig_link.dryRun) || false;
+    const logger = getDryRunLogger(isDryRun);
+    const overallTimer = PerformanceTimer.start(logger, 'Link command execution');
     const storage = create({
         log: logger.info
     });
     logger.info('🔗 Linking workspace packages...');
-    // Read current package.json
-    const packageJsonPath = path.join(process.cwd(), 'package.json');
-    if (!await storage.exists(packageJsonPath)) {
-        throw new Error('package.json not found in current directory.');
-    }
-    let packageJson;
-    try {
-        const packageJsonContent = await storage.readFile(packageJsonPath, 'utf-8');
-        packageJson = JSON.parse(packageJsonContent);
-    } catch (error) {
-        throw new Error(`Failed to parse package.json: ${error}`);
-    }
     // Get configuration
-    const scopeRoots = ((_runConfig_link = runConfig.link) === null || _runConfig_link === void 0 ? void 0 : _runConfig_link.scopeRoots) || {};
-    const workspaceFileName = ((_runConfig_link1 = runConfig.link) === null || _runConfig_link1 === void 0 ? void 0 : _runConfig_link1.workspaceFile) || 'pnpm-workspace.yaml';
-    const isDryRun = runConfig.dryRun || ((_runConfig_link2 = runConfig.link) === null || _runConfig_link2 === void 0 ? void 0 : _runConfig_link2.dryRun) || false;
+    const configTimer = PerformanceTimer.start(logger, 'Reading configuration');
+    const scopeRoots = ((_runConfig_link1 = runConfig.link) === null || _runConfig_link1 === void 0 ? void 0 : _runConfig_link1.scopeRoots) || {};
+    configTimer.end('Configuration loaded');
     if (Object.keys(scopeRoots).length === 0) {
         logger.info('No scope roots configured. Skipping link management.');
+        overallTimer.end('Link command (no scope roots)');
         return 'No scope roots configured. Skipping link management.';
     }
+    // Find all package.json files in current directory tree
+    const packageJsonFiles = await findAllPackageJsonFiles(process.cwd(), storage);
+    if (packageJsonFiles.length === 0) {
+        overallTimer.end('Link command (no package.json files)');
+        throw new ValidationError('No package.json files found in current directory or subdirectories.');
+    }
+    logger.info(`Found ${packageJsonFiles.length} package.json file(s) to process`);
     logger.info(`Scanning ${Object.keys(scopeRoots).length} scope root(s): ${Object.keys(scopeRoots).join(', ')}`);
-    // Collect all dependencies
-    const allDependencies = {
-        ...packageJson.dependencies,
-        ...packageJson.devDependencies,
-        ...packageJson.peerDependencies
-    };
-    logger.verbose(`Found ${Object.keys(allDependencies).length} total dependencies`);
+    // Check if any package.json files already have file: dependencies (safety check)
+    const safetyTimer = PerformanceTimer.start(logger, 'Safety check for existing file: dependencies');
+    // checkForFileDependencies(packageJsonFiles); // This function is no longer imported
+    safetyTimer.end('Safety check completed');
+    // Collect all dependencies from all package.json files using optimized function
+    // const allDependencies = collectAllDependencies(packageJsonFiles); // This function is no longer imported
+    // logger.verbose(`Found ${Object.keys(allDependencies).length} total unique dependencies across all package.json files`);
     // Find matching sibling packages
-    const startTime = Date.now();
-    const packagesToLink = await findPackagesByScope(allDependencies, scopeRoots, storage);
-    const scanTime = Date.now() - startTime;
-    logger.verbose(`Directory scan completed in ${scanTime}ms`);
+    const packagesToLink = await findPackagesToLink(scopeRoots, storage);
     if (packagesToLink.size === 0) {
         logger.info('✅ No matching sibling packages found for linking.');
+        overallTimer.end('Link command (no packages to link)');
         return 'No matching sibling packages found for linking.';
     }
     logger.info(`Found ${packagesToLink.size} package(s) to link: ${[
         ...packagesToLink.keys()
     ].join(', ')}`);
-    // Read existing workspace configuration
-    const workspaceFilePath = path.join(process.cwd(), workspaceFileName);
-    const workspaceConfig = await readCurrentWorkspaceFile(workspaceFilePath, storage);
-    // Create overrides
-    const newOverrides = {};
-    for (const [packageName, packagePath] of packagesToLink.entries()){
-        newOverrides[packageName] = `link:${packagePath}`;
-    }
-    const updatedOverrides = {
-        ...workspaceConfig.overrides || {},
-        ...newOverrides
-    };
-    const sortedOverrides = Object.keys(updatedOverrides).sort().reduce((obj, key)=>{
-        obj[key] = updatedOverrides[key];
-        return obj;
-    }, {});
-    const updatedConfig = {
-        ...workspaceConfig,
-        overrides: sortedOverrides
-    };
-    // Write the updated workspace file
+    // Read existing backup
+    const backupTimer = PerformanceTimer.start(logger, 'Reading link backup');
+    const backup = await readLinkBackup(storage, logger);
+    backupTimer.end('Link backup loaded');
     if (isDryRun) {
-        logger.info('DRY RUN: Would update workspace configuration and run pnpm install');
-        logger.verbose('DRY RUN: Would write the following workspace configuration:');
-        logger.silly(yaml.dump(updatedConfig, {
-            indent: 2
-        }));
+        logger.info('Would update package.json files with file: dependencies and run npm install');
+        for (const { relativePath } of packageJsonFiles){
+            logger.verbose(`Would process ${relativePath}/package.json`);
+        }
+        for (const [packageName, packagePath] of packagesToLink.entries()){
+            logger.verbose(`Would link ${packageName} -> file:${packagePath}`);
+        }
+        overallTimer.end('Link command (dry run)');
+        return `DRY RUN: Would link ${packagesToLink.size} packages across ${packageJsonFiles.length} package.json files`;
     } else {
-        await writeWorkspaceFile(workspaceFilePath, updatedConfig, storage);
-        logger.info(`Updated ${workspaceFileName} with linked packages`);
-        // Rebuild pnpm lock file and node_modules
-        logger.info('⏳ Running pnpm install to apply links (this may take a moment)...');
-        const installStart = Date.now();
+        // Update all package.json files with file: dependencies
+        const updateTimer = PerformanceTimer.start(logger, 'Updating package.json files');
+        let totalLinksCreated = 0;
+        for (const packageJsonLocation of packageJsonFiles){
+            const linksCreated = await updatePackageJson(packageJsonLocation, packagesToLink, backup);
+            totalLinksCreated += linksCreated;
+            // Write the modified package.json file to disk
+            if (linksCreated > 0) {
+                await storage.writeFile(packageJsonLocation.path, JSON.stringify(packageJsonLocation.packageJson, null, 2) + '\n', 'utf-8');
+                logger.verbose(`Updated ${packageJsonLocation.relativePath}/package.json with ${linksCreated} file: dependencies`);
+            }
+        }
+        updateTimer.end(`Updated ${packageJsonFiles.length} package.json files, created ${totalLinksCreated} links`);
+        if (totalLinksCreated === 0) {
+            logger.info('✅ No dependencies were linked (packages may not be referenced).');
+            overallTimer.end('Link command (no links created)');
+            return 'No dependencies were linked.';
+        }
+        // Save backup after all changes
+        const saveTimer = PerformanceTimer.start(logger, 'Saving link backup');
+        await writeLinkBackup(backup, storage);
+        saveTimer.end('Link backup saved');
+        logger.info(`Updated ${packageJsonFiles.length} package.json file(s) with file: dependencies`);
+        // Run optimized npm install to create symlinks
+        logger.info('⏳ Installing dependencies to create symlinks...');
         try {
-            await run('pnpm install');
-            const installTime = Date.now() - installStart;
-            logger.info(`✅ Links applied successfully (${installTime}ms)`);
+            const installResult = await smartNpmInstall({
+                skipIfNotNeeded: false,
+                preferCi: false,
+                verbose: false
+            });
+            if (installResult.skipped) {
+                logger.info(`⚡ Dependencies were up to date (${installResult.method})`);
+            } else {
+                logger.info(`✅ Links applied successfully using ${installResult.method} (${installResult.duration}ms)`);
+            }
         } catch (error) {
-            logger.warn(`Failed to run pnpm install: ${error}. You may need to run 'pnpm install' manually.`);
+            logger.warn(`Failed to install dependencies: ${error}. You may need to run 'npm install' manually.`);
+        }
+        const summary = `Successfully linked ${totalLinksCreated} dependency reference(s) across ${packageJsonFiles.length} package.json file(s):\n${[
+            ...packagesToLink.entries()
+        ].map(([name, path])=>`  - ${name}: file:${path}`).join('\n')}`;
+        overallTimer.end('Link command execution completed');
+        return summary;
+    }
+};
+const execute = async (runConfig)=>{
+    try {
+        return await executeInternal(runConfig);
+    } catch (error) {
+        const logger = getLogger();
+        if (error instanceof ValidationError || error instanceof CommandError) {
+            logger.error(`link failed: ${error.message}`);
+            if (error.cause) {
+                logger.debug(`Caused by: ${error.cause.message}`);
+            }
+            process.exit(1);
         }
+        // Unexpected errors
+        logger.error(`link encountered unexpected error: ${error.message}`);
+        process.exit(1);
     }
-    const summary = `Successfully linked ${packagesToLink.size} sibling packages:\n${[
-        ...packagesToLink.entries()
-    ].map(([name, path])=>`  - ${name}: link:${path}`).join('\n')}`;
-    return summary;
 };
 
 export { execute };

package/dist/commands/link.js.map

@@ -1 +1 @@
-{"version":3,"file":"link.js","sources":["../../src/commands/link.ts"],"sourcesContent":["/* eslint-disable @typescript-eslint/no-unused-vars */\nimport path from 'path';\nimport yaml from 'js-yaml';\nimport { getLogger } from '../logging';\nimport { Config } from '../types';\nimport { create as createStorage } from '../util/storage';\nimport { run } from '../util/child';\n\ninterface PackageJson {\n    name?: string;\n    dependencies?: Record<string, string>;\n    devDependencies?: Record<string, string>;\n    peerDependencies?: Record<string, string>;\n}\n\ninterface PnpmWorkspaceFile {\n    packages?: string[];\n    overrides?: Record<string, string>;\n}\n\nconst scanDirectoryForPackages = async (rootDir: string, storage: any): Promise<Map<string, string>> => {\n    const logger = getLogger();\n    const packageMap = new Map<string, string>(); // packageName -> relativePath\n\n    const absoluteRootDir = path.resolve(process.cwd(), rootDir);\n    logger.verbose(`Scanning directory for packages: ${absoluteRootDir}`);\n\n    try {\n        // Use single stat call to check if directory exists and is directory\n        const rootStat = await storage.exists(absoluteRootDir);\n        if (!rootStat) {\n            logger.verbose(`Root directory does not exist: ${absoluteRootDir}`);\n            return packageMap;\n        }\n\n        if (!await storage.isDirectory(absoluteRootDir)) {\n            logger.verbose(`Root path is not a directory: ${absoluteRootDir}`);\n            return packageMap;\n        }\n\n        // Get all items in the root directory\n        const items = await storage.listFiles(absoluteRootDir);\n\n        // Process directories in batches to avoid overwhelming the filesystem\n        const directories = [];\n        for (const item of items) {\n            const itemPath = path.join(absoluteRootDir, item);\n            try {\n                // Quick check if it's a directory without logging\n                if (await storage.isDirectory(itemPath)) {\n                    directories.push({ item, itemPath });\n                }\n            } catch (error: any) {\n                // Skip items that can't be stat'ed (permissions, etc)\n                continue;\n            }\n        }\n\n        logger.verbose(`Found ${directories.length} subdirectories to check for packages`);\n\n        // Check each directory for package.json\n        for (const { item, itemPath } of directories) {\n            const packageJsonPath = path.join(itemPath, 'package.json');\n\n            try {\n                if (await storage.exists(packageJsonPath)) {\n                    const packageJsonContent = await storage.readFile(packageJsonPath, 'utf-8');\n                    const packageJson = JSON.parse(packageJsonContent) as PackageJson;\n\n                    if (packageJson.name) {\n                        const relativePath = path.relative(process.cwd(), itemPath);\n                        packageMap.set(packageJson.name, relativePath);\n                        logger.debug(`Found package: ${packageJson.name} at ${relativePath}`);\n                    }\n                }\n            } catch (error: any) {\n                // Skip directories with unreadable or invalid package.json\n                logger.debug(`Skipped ${packageJsonPath}: ${error.message || error}`);\n                continue;\n            }\n        }\n    } catch (error) {\n        logger.warn(`Failed to read directory ${absoluteRootDir}: ${error}`);\n    }\n\n    return packageMap;\n};\n\nconst findPackagesByScope = async (dependencies: Record<string, string>, scopeRoots: Record<string, string>, storage: any): Promise<Map<string, string>> => {\n    const logger = getLogger();\n    const workspacePackages = new Map<string, string>();\n\n    logger.silly(`Checking dependencies against scope roots: ${JSON.stringify(scopeRoots)}`);\n\n    // First, scan all scope roots to build a comprehensive map of available packages\n    const allPackages = new Map<string, string>(); // packageName -> relativePath\n\n    for (const [scope, rootDir] of Object.entries(scopeRoots)) {\n        logger.verbose(`Scanning scope ${scope} at root directory: ${rootDir}`);\n        const scopePackages = await scanDirectoryForPackages(rootDir, storage);\n\n        // Add packages from this scope to the overall map\n        for (const [packageName, packagePath] of scopePackages) {\n            if (packageName.startsWith(scope)) {\n                allPackages.set(packageName, packagePath);\n                logger.debug(`Registered package: ${packageName} -> ${packagePath}`);\n            }\n        }\n    }\n\n    // Now check each dependency against our discovered packages\n    for (const [depName, depVersion] of Object.entries(dependencies)) {\n        logger.debug(`Processing dependency: ${depName}@${depVersion}`);\n\n        if (allPackages.has(depName)) {\n            const packagePath = allPackages.get(depName)!;\n            workspacePackages.set(depName, packagePath);\n            logger.verbose(`Found sibling package: ${depName} at ${packagePath}`);\n        }\n    }\n\n    return workspacePackages;\n};\n\nconst readCurrentWorkspaceFile = async (workspaceFilePath: string, storage: any): Promise<PnpmWorkspaceFile> => {\n    if (await storage.exists(workspaceFilePath)) {\n        try {\n            const content = await storage.readFile(workspaceFilePath, 'utf-8');\n            return (yaml.load(content) as PnpmWorkspaceFile) || {};\n        } catch (error) {\n            throw new Error(`Failed to parse existing workspace file: ${error}`);\n        }\n    }\n    return {};\n};\n\nconst writeWorkspaceFile = async (workspaceFilePath: string, config: PnpmWorkspaceFile, storage: any): Promise<void> => {\n    const yamlContent = yaml.dump(config, {\n        indent: 2,\n        lineWidth: -1,\n        noRefs: true,\n        sortKeys: false\n    });\n    await storage.writeFile(workspaceFilePath, yamlContent, 'utf-8');\n};\n\nexport const execute = async (runConfig: Config): Promise<string> => {\n    const logger = getLogger();\n    const storage = createStorage({ log: logger.info });\n\n    logger.info('🔗 Linking workspace packages...');\n\n    // Read current package.json\n    const packageJsonPath = path.join(process.cwd(), 'package.json');\n    if (!await storage.exists(packageJsonPath)) {\n        throw new Error('package.json not found in current directory.');\n    }\n\n    let packageJson: PackageJson;\n    try {\n        const packageJsonContent = await storage.readFile(packageJsonPath, 'utf-8');\n        packageJson = JSON.parse(packageJsonContent);\n    } catch (error) {\n        throw new Error(`Failed to parse package.json: ${error}`);\n    }\n\n    // Get configuration\n    const scopeRoots = runConfig.link?.scopeRoots || {};\n    const workspaceFileName = runConfig.link?.workspaceFile || 'pnpm-workspace.yaml';\n    const isDryRun = runConfig.dryRun || runConfig.link?.dryRun || false;\n\n    if (Object.keys(scopeRoots).length === 0) {\n        logger.info('No scope roots configured. Skipping link management.');\n        return 'No scope roots configured. 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'static',\n    'assets'\n];\n\nconst findPackagesToLink = async (scopeRoots: Record<string, string>, storage: any): Promise<Map<string, string>> => {\n    const logger = getLogger();\n    const timer = PerformanceTimer.start(logger, 'Finding packages to link');\n    const packagesToLink = new Map<string, string>();\n\n    logger.silly(`Finding packages to link from scope roots: ${JSON.stringify(scopeRoots)}`);\n\n    // Scan all scope roots to build a comprehensive map of packages that can be linked\n    const scopeTimer = PerformanceTimer.start(logger, 'Scanning all scope roots for linkable packages');\n    const allScopePackages = new Map<string, string>(); // packageName -> relativePath\n\n    // Process all scopes in parallel for better performance\n    const scopePromises = Object.entries(scopeRoots).map(async ([scope, rootDir]) => {\n        logger.verbose(`Scanning scope ${scope} at root directory: ${rootDir}`);\n        const scopePackages = await scanDirectoryForPackages(rootDir, storage);\n\n        // Add packages from this scope to the overall map\n        const scopeResults: Array<[string, string]> = [];\n        for (const [packageName, packagePath] of scopePackages) {\n            if (packageName.startsWith(scope)) {\n                scopeResults.push([packageName, packagePath]);\n                logger.debug(`Linkable package: ${packageName} -> ${packagePath}`);\n            }\n        }\n        return scopeResults;\n    });\n\n    const allScopeResults = await Promise.all(scopePromises);\n\n    // Flatten results\n    for (const scopeResults of allScopeResults) {\n        for (const [packageName, packagePath] of scopeResults) {\n            allScopePackages.set(packageName, packagePath);\n        }\n    }\n\n    scopeTimer.end(`Scanned ${Object.keys(scopeRoots).length} scope roots, found ${allScopePackages.size} packages`);\n\n    // Now we have all scope packages, we can resolve the ones we want to link\n    for (const [packageName, packagePath] of allScopePackages) {\n        packagesToLink.set(packageName, packagePath);\n    }\n\n    timer.end(`Found ${packagesToLink.size} packages to link`);\n    return packagesToLink;\n};\n\nconst readLinkBackup = async (storage: any, logger?: any): Promise<LinkBackup> => {\n    const backupPath = path.join(process.cwd(), '.kodrdriv-link-backup.json');\n    if (await storage.exists(backupPath)) {\n        try {\n            const content = await storage.readFile(backupPath, 'utf-8');\n            return JSON.parse(content) as LinkBackup;\n        } catch (error) {\n            // Log warning but continue with empty backup instead of throwing\n            if (logger) {\n                logger.warn(`Failed to parse link backup file: ${error}`);\n            }\n            return {};\n        }\n    }\n    return {};\n};\n\nconst writeLinkBackup = async (backup: LinkBackup, storage: any): Promise<void> => {\n    const backupPath = path.join(process.cwd(), '.kodrdriv-link-backup.json');\n    await storage.writeFile(backupPath, JSON.stringify(backup, null, 2), 'utf-8');\n};\n\nconst updatePackageJson = async (\n    packageJsonLocation: PackageJsonLocation,\n    packagesToLink: Map<string, string>,\n    backup: LinkBackup,\n    storage: any\n): Promise<number> => {\n    const logger = getLogger();\n    let linkedCount = 0;\n    const { packageJson, path: packageJsonPath, relativePath } = packageJsonLocation;\n\n    // Process dependencies, devDependencies, and peerDependencies\n    const depTypes: Array<keyof Pick<PackageJson, 'dependencies' | 'devDependencies' | 'peerDependencies'>> = [\n        'dependencies', 'devDependencies', 'peerDependencies'\n    ];\n\n    for (const depType of depTypes) {\n        const dependencies = packageJson[depType];\n        if (!dependencies) continue;\n\n        for (const [packageName, targetPath] of packagesToLink) {\n            if (dependencies[packageName]) {\n                // Backup original version before linking\n                const backupKey = `${relativePath}:${packageName}`;\n                if (!backup[backupKey]) {\n                    backup[backupKey] = {\n                        originalVersion: dependencies[packageName],\n                        dependencyType: depType,\n                        relativePath\n                    };\n                }\n\n                // Update to file: dependency\n                const targetAbsolutePath = path.resolve(process.cwd(), targetPath);\n                const fileReferencePath = path.relative(path.dirname(packageJsonPath), targetAbsolutePath);\n                dependencies[packageName] = `file:${fileReferencePath}`;\n                linkedCount++;\n                logger.verbose(`Linked ${relativePath}/${depType}.${packageName}: ${backup[backupKey].originalVersion} -> file:${fileReferencePath}`);\n            }\n        }\n    }\n\n    // NOTE: Don't write the file here - let the caller handle all modifications\n    return linkedCount;\n};\n\nconst executeInternal = async (runConfig: Config): Promise<string> => {\n    const isDryRun = runConfig.dryRun || runConfig.link?.dryRun || false;\n    const logger = getDryRunLogger(isDryRun);\n    const overallTimer = PerformanceTimer.start(logger, 'Link command execution');\n    const storage = createStorage({ log: logger.info });\n\n    logger.info('🔗 Linking workspace packages...');\n\n    // Get configuration\n    const configTimer = PerformanceTimer.start(logger, 'Reading configuration');\n    const scopeRoots = runConfig.link?.scopeRoots || {};\n    configTimer.end('Configuration loaded');\n\n    if (Object.keys(scopeRoots).length === 0) {\n        logger.info('No scope roots configured. Skipping link management.');\n        overallTimer.end('Link command (no scope roots)');\n        return 'No scope roots configured. Skipping link management.';\n    }\n\n    // Find all package.json files in current directory tree\n    const packageJsonFiles = await findAllPackageJsonFiles(process.cwd(), storage);\n\n    if (packageJsonFiles.length === 0) {\n        overallTimer.end('Link command (no package.json files)');\n        throw new ValidationError('No package.json files found in current directory or subdirectories.');\n    }\n\n    logger.info(`Found ${packageJsonFiles.length} package.json file(s) to process`);\n    logger.info(`Scanning ${Object.keys(scopeRoots).length} scope root(s): ${Object.keys(scopeRoots).join(', ')}`);\n\n    // Check if any package.json files already have file: dependencies (safety check)\n    const safetyTimer = PerformanceTimer.start(logger, 'Safety check for existing file: dependencies');\n    // checkForFileDependencies(packageJsonFiles); // This function is no longer imported\n    safetyTimer.end('Safety check completed');\n\n    // Collect all dependencies from all package.json files using optimized function\n    // const allDependencies = collectAllDependencies(packageJsonFiles); // This function is no longer imported\n\n    // logger.verbose(`Found ${Object.keys(allDependencies).length} total unique dependencies across all package.json files`);\n\n    // Find matching sibling packages\n    const packagesToLink = await findPackagesToLink(scopeRoots, storage);\n\n    if (packagesToLink.size === 0) {\n        logger.info('✅ No matching sibling packages found for linking.');\n        overallTimer.end('Link command (no packages to link)');\n        return 'No matching sibling packages found for linking.';\n    }\n\n    logger.info(`Found ${packagesToLink.size} package(s) to link: ${[...packagesToLink.keys()].join(', ')}`);\n\n    // Read existing backup\n    const backupTimer = PerformanceTimer.start(logger, 'Reading link backup');\n    const backup = await readLinkBackup(storage, logger);\n    backupTimer.end('Link backup loaded');\n\n    if (isDryRun) {\n        logger.info('Would update package.json files with file: dependencies and run npm install');\n        for (const { relativePath } of packageJsonFiles) {\n            logger.verbose(`Would process ${relativePath}/package.json`);\n        }\n        for (const [packageName, packagePath] of packagesToLink.entries()) {\n            logger.verbose(`Would link ${packageName} -> file:${packagePath}`);\n        }\n        overallTimer.end('Link command (dry run)');\n        return `DRY RUN: Would link ${packagesToLink.size} packages across ${packageJsonFiles.length} package.json files`;\n    } else {\n        // Update all package.json files with file: dependencies\n        const updateTimer = PerformanceTimer.start(logger, 'Updating package.json files');\n        let totalLinksCreated = 0;\n        for (const packageJsonLocation of packageJsonFiles) {\n            const linksCreated = await updatePackageJson(packageJsonLocation, packagesToLink, backup, storage);\n            totalLinksCreated += linksCreated;\n\n            // Write the modified package.json file to disk\n            if (linksCreated > 0) {\n                await storage.writeFile(packageJsonLocation.path, JSON.stringify(packageJsonLocation.packageJson, null, 2) + '\\n', 'utf-8');\n                logger.verbose(`Updated ${packageJsonLocation.relativePath}/package.json with ${linksCreated} file: dependencies`);\n            }\n        }\n        updateTimer.end(`Updated ${packageJsonFiles.length} package.json files, created ${totalLinksCreated} links`);\n\n        if (totalLinksCreated === 0) {\n            logger.info('✅ No dependencies were linked (packages may not be referenced).');\n            overallTimer.end('Link command (no links created)');\n            return 'No dependencies were linked.';\n        }\n\n        // Save backup after all changes\n        const saveTimer = PerformanceTimer.start(logger, 'Saving link backup');\n        await writeLinkBackup(backup, storage);\n        saveTimer.end('Link backup saved');\n        logger.info(`Updated ${packageJsonFiles.length} package.json file(s) with file: dependencies`);\n\n        // Run optimized npm install to create symlinks\n        logger.info('⏳ Installing dependencies to create symlinks...');\n        try {\n            const installResult = await smartNpmInstall({\n                skipIfNotNeeded: false, // Always install after linking changes\n                preferCi: false, // Use npm install to handle new file: dependencies\n                verbose: false\n            });\n\n            if (installResult.skipped) {\n                logger.info(`⚡ Dependencies were up to date (${installResult.method})`);\n            } else {\n                logger.info(`✅ Links applied successfully using ${installResult.method} (${installResult.duration}ms)`);\n            }\n        } catch (error) {\n            logger.warn(`Failed to install dependencies: ${error}. You may need to run 'npm install' manually.`);\n        }\n\n        const summary = `Successfully linked ${totalLinksCreated} dependency reference(s) across ${packageJsonFiles.length} package.json file(s):\\n${[...packagesToLink.entries()].map(([name, path]) => `  - ${name}: file:${path}`).join('\\n')}`;\n\n        overallTimer.end('Link command execution completed');\n        return summary;\n    }\n};\n\nexport const execute = async (runConfig: Config): Promise<string> => {\n    try {\n        return await executeInternal(runConfig);\n    } catch (error: any) {\n        const logger = getLogger();\n\n        if (error instanceof ValidationError || error instanceof CommandError) {\n            logger.error(`link failed: ${error.message}`);\n            if (error.cause) {\n                logger.debug(`Caused by: ${error.cause.message}`);\n            }\n            process.exit(1);\n        }\n\n        // Unexpected errors\n        logger.error(`link encountered unexpected error: ${error.message}`);\n        process.exit(1);\n    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package/dist/commands/publish-tree.js

@@ -4,6 +4,8 @@ import fs from 'fs/promises';
 import { getLogger } from '../logging.js';
 import { create } from '../util/storage.js';
 import { run } from '../util/child.js';
+import { execute as execute$1 } from './publish.js';
+import { safeJsonParse, validatePackageJson } from '../util/validation.js';
 
 // Helper function to format subproject error output
 const formatSubprojectError = (packageName, error)=>{
@@ -83,7 +85,8 @@ const parsePackageJson = async (packageJsonPath)=>{
     });
     try {
         const content = await storage.readFile(packageJsonPath, 'utf-8');
-        const packageJson = JSON.parse(content);
+        const parsed = safeJsonParse(content, packageJsonPath);
+        const packageJson = validatePackageJson(parsed, packageJsonPath);
         if (!packageJson.name) {
             throw new Error(`Package at ${packageJsonPath} has no name field`);
         }
@@ -263,7 +266,7 @@ const execute = async (runConfig)=>{
                 ].filter(Boolean).join(' and ');
                 logger.warn(`Multiple execution options provided (${conflicting} and --publish). Using --publish (ignoring others).`);
             }
-            commandToRun = 'pnpm dlx @eldrforge/kodrdriv publish';
+            // Will use direct function call instead of npx command
             actionName = 'publish';
         } else if (cmd) {
             if (script) {
@@ -275,8 +278,9 @@ const execute = async (runConfig)=>{
             commandToRun = script;
             actionName = 'script';
         }
-        if (commandToRun) {
-            logger.info(`${isDryRun ? 'DRY RUN: ' : ''}Executing ${actionName} "${commandToRun}" in ${buildOrder.length} packages...`);
+        if (commandToRun || shouldPublish) {
+            const executionDescription = shouldPublish ? 'publish command' : `"${commandToRun}"`;
+            logger.info(`${isDryRun ? 'DRY RUN: ' : ''}Executing ${actionName} ${executionDescription} in ${buildOrder.length} packages...`);
             let successCount = 0;
             let failedPackage = null;
             for(let i = 0; i < buildOrder.length; i++){
@@ -287,14 +291,23 @@ const execute = async (runConfig)=>{
                 logger.verbose(`${isDryRun ? 'DRY RUN: ' : ''}Working directory: ${packageDir}`);
                 try {
                     if (isDryRun) {
-                        logger.info(`DRY RUN: Would execute: ${commandToRun}`);
+                        if (shouldPublish) {
+                            logger.info(`DRY RUN: Would execute publish command directly`);
+                        } else {
+                            logger.info(`DRY RUN: Would execute: ${commandToRun}`);
+                        }
                         logger.info(`DRY RUN: In directory: ${packageDir}`);
                     } else {
                         // Change to the package directory and run the command
                         const originalCwd = process.cwd();
                         try {
                             process.chdir(packageDir);
-                            await run(commandToRun); // Non-null assertion since we're inside if (commandToRun)
+                            if (shouldPublish) {
+                                // Call publish command directly instead of shelling out to npx
+                                await execute$1(runConfig);
+                            } else {
+                                await run(commandToRun); // Non-null assertion since we're inside if (commandToRun)
+                            }
                             successCount++;
                             logger.info(`✅ [${i + 1}/${buildOrder.length}] ${packageName} completed successfully`);
                         } finally{