@elaraai/e3-core 0.0.2-beta.9 → 1.0.1

package/dist/src/packages.js

@@ -10,29 +10,61 @@
  */
 import * as fs from 'fs/promises';
 import { createWriteStream } from 'fs';
-import * as path from 'path';
 import yauzl from 'yauzl';
 import yazl from 'yazl';
-import { decodeBeast2For } from '@elaraai/east';
-import { PackageObjectType } from '@elaraai/e3-types';
-import { objectWrite, objectRead } from './objects.js';
-import { PackageNotFoundError, PackageInvalidError, isNotFoundError, } from './errors.js';
+import { decodeBeast2For, encodeBeast2For } from '@elaraai/east';
+import { PackageObjectType, TaskObjectType, DataflowRunType, ExecutionStatusType, DatasetRefType } from '@elaraai/e3-types';
+import { PackageNotFoundError, PackageInvalidError, } from './errors.js';
 /**
  * Import a package from a .zip file into the repository.
  *
  * Extracts objects to `objects/`, creates ref at `packages/<name>/<version>`.
  *
- * @param repoPath - Path to .e3 repository
+ * @param storage - Storage backend
+ * @param repo - Repository identifier
  * @param zipPath - Path to the .zip package file
+ * @param options - Optional import options (e.g. progress callback)
  * @returns Import result with package name, version, and stats
  */
-export async function packageImport(repoPath, zipPath) {
+export async function packageImport(storage, repo, zipPath, options) {
     // Open the zip file
     const zipfile = await openZip(zipPath);
     let packageName;
     let packageVersion;
     let packageHash;
     let objectCount = 0;
+    // Track current execution being assembled (flush on directory change)
+    let currentExecDir = null;
+    let currentExecFiles = new Map();
+    const flushExecution = async () => {
+        if (currentExecDir === null)
+            return;
+        const [taskHash, inputsHash, executionId] = currentExecDir.split('/');
+        // Check if execution already exists — skip if so
+        const existingStatus = await storage.refs.executionGet(repo, taskHash, inputsHash, executionId);
+        if (existingStatus !== null) {
+            currentExecDir = null;
+            currentExecFiles = new Map();
+            return;
+        }
+        // Write status first
+        const statusData = currentExecFiles.get('status.beast2');
+        if (statusData) {
+            const statusDecoder = decodeBeast2For(ExecutionStatusType);
+            const status = statusDecoder(statusData);
+            await storage.refs.executionWrite(repo, taskHash, inputsHash, executionId, status);
+        }
+        // Write logs
+        for (const stream of ['stdout.txt', 'stderr.txt']) {
+            const logData = currentExecFiles.get(stream);
+            if (logData && logData.length > 0) {
+                const streamName = stream === 'stdout.txt' ? 'stdout' : 'stderr';
+                await storage.logs.append(repo, taskHash, inputsHash, executionId, streamName, logData.toString('utf-8'));
+            }
+        }
+        currentExecDir = null;
+        currentExecFiles = new Map();
+    };
     try {
         // Iterate through all entries
         for await (const entry of iterateZipEntries(zipfile)) {
@@ -51,19 +83,56 @@ export async function packageImport(repoPath, zipPath) {
                     const data = await getData();
                     packageHash = data.toString('utf-8').trim();
                     // Write the ref to the repository
-                    const refDir = path.join(repoPath, 'packages', packageName);
-                    await fs.mkdir(refDir, { recursive: true });
-                    const refPath = path.join(refDir, packageVersion);
-                    await fs.writeFile(refPath, packageHash + '\n');
+                    await storage.refs.packageWrite(repo, packageName, packageVersion, packageHash);
                 }
                 continue;
             }
             // Handle object: objects/<ab>/<cdef...>.beast2
             if (fileName.startsWith('objects/')) {
                 const data = await getData();
-                // Store the object (objectWrite will verify the hash matches)
-                await objectWrite(repoPath, data);
+                // Store the object (storage.objects.write will verify the hash matches)
+                await storage.objects.write(repo, data);
                 objectCount++;
+                if (options?.onProgress) {
+                    await options.onProgress({ objectsProcessed: objectCount });
+                }
+                continue;
+            }
+            // Handle dataflow runs: dataflows/<workspace>/<runId>.beast2
+            if (fileName.startsWith('dataflows/')) {
+                const parts = fileName.split('/');
+                if (parts.length === 3 && parts[2].endsWith('.beast2')) {
+                    const workspace = parts[1];
+                    // Decode and write the dataflow run
+                    const data = await getData();
+                    const decoder = decodeBeast2For(DataflowRunType);
+                    const run = decoder(data);
+                    await storage.refs.dataflowRunWrite(repo, workspace, run);
+                }
+                continue;
+            }
+            // Handle executions: executions/<taskHash>/<inputsHash>/<executionId>/<file>
+            if (fileName.startsWith('executions/')) {
+                const parts = fileName.split('/');
+                if (parts.length >= 5) {
+                    const taskHash = parts[1];
+                    const inputsHash = parts[2];
+                    const executionId = parts[3];
+                    const file = parts.slice(4).join('/');
+                    const execDir = `${taskHash}/${inputsHash}/${executionId}`;
+                    // Flush previous execution if we've moved to a new one
+                    if (currentExecDir !== null && currentExecDir !== execDir) {
+                        await flushExecution();
+                    }
+                    currentExecDir = execDir;
+                    currentExecFiles.set(file, await getData());
+                }
+                continue;
+            }
+            // Handle data refs: data/<path>.ref
+            if (fileName.startsWith('data/') && fileName.endsWith('.ref')) {
+                // Per-dataset ref files in the zip are redundant — refs are stored
+                // inline in the PackageObject's data.refs field. Skip them.
                 continue;
             }
             // Unknown entry type - ignore for forward compatibility
@@ -73,6 +142,8 @@ export async function packageImport(repoPath, zipPath) {
         // Close the zip file
         zipfile.close();
     }
+    // Flush the last execution
+    await flushExecution();
     if (!packageName || !packageVersion || !packageHash) {
         throw new PackageInvalidError('missing package ref');
     }
@@ -88,67 +159,40 @@ export async function packageImport(repoPath, zipPath) {
  *
  * Objects remain until gc is run.
  *
- * @param repoPath - Path to .e3 repository
+ * @param storage - Storage backend
+ * @param repo - Repository identifier
  * @param name - Package name
  * @param version - Package version
  * @throws {PackageNotFoundError} If package doesn't exist
  */
-export async function packageRemove(repoPath, name, version) {
-    const refPath = path.join(repoPath, 'packages', name, version);
-    try {
-        await fs.unlink(refPath);
-    }
-    catch (err) {
-        if (isNotFoundError(err)) {
-            throw new PackageNotFoundError(name, version);
-        }
-        throw err;
-    }
-    // Try to remove the package name directory if empty
-    const packageDir = path.join(repoPath, 'packages', name);
-    try {
-        await fs.rmdir(packageDir);
-    }
-    catch {
-        // Directory not empty, that's fine
+export async function packageRemove(storage, repo, name, version) {
+    // Check if package exists first (storage.refs.packageRemove is idempotent)
+    const hash = await storage.refs.packageResolve(repo, name, version);
+    if (hash === null) {
+        throw new PackageNotFoundError(name, version);
     }
+    await storage.refs.packageRemove(repo, name, version);
 }
 /**
  * List all installed packages.
  *
- * @param repoPath - Path to .e3 repository
+ * @param storage - Storage backend
+ * @param repo - Repository identifier
  * @returns Array of (name, version) pairs
  */
-export async function packageList(repoPath) {
-    const packagesDir = path.join(repoPath, 'packages');
-    const packages = [];
-    try {
-        const names = await fs.readdir(packagesDir);
-        for (const name of names) {
-            const nameDir = path.join(packagesDir, name);
-            const stat = await fs.stat(nameDir);
-            if (stat.isDirectory()) {
-                const versions = await fs.readdir(nameDir);
-                for (const version of versions) {
-                    packages.push({ name, version });
-                }
-            }
-        }
-    }
-    catch {
-        // packages directory doesn't exist or is empty
-    }
-    return packages;
+export async function packageList(storage, repo) {
+    return storage.refs.packageList(repo);
 }
 /**
  * Get the latest version of a package.
  *
- * @param repoPath - Path to .e3 repository
+ * @param storage - Storage backend
+ * @param repo - Repository identifier
  * @param name - Package name
  * @returns Latest version string, or undefined if package not found
  */
-export async function packageGetLatestVersion(repoPath, name) {
-    const packages = await packageList(repoPath);
+export async function packageGetLatestVersion(storage, repo, name) {
+    const packages = await packageList(storage, repo);
     const versions = packages
         .filter(p => p.name === name)
         .map(p => p.version)
@@ -158,39 +202,40 @@ export async function packageGetLatestVersion(repoPath, name) {
 /**
  * Resolve a package to its PackageObject hash.
  *
- * @param repoPath - Path to .e3 repository
+ * @param storage - Storage backend
+ * @param repo - Repository identifier
  * @param name - Package name
  * @param version - Package version
  * @returns PackageObject hash
  * @throws {PackageNotFoundError} If package doesn't exist
  */
-export async function packageResolve(repoPath, name, version) {
-    const refPath = path.join(repoPath, 'packages', name, version);
-    try {
-        const content = await fs.readFile(refPath, 'utf-8');
-        return content.trim();
-    }
-    catch (err) {
-        if (isNotFoundError(err)) {
-            throw new PackageNotFoundError(name, version);
-        }
-        throw err;
+export async function packageResolve(storage, repo, name, version) {
+    const hash = await storage.refs.packageResolve(repo, name, version);
+    if (hash === null) {
+        throw new PackageNotFoundError(name, version);
     }
+    return hash;
 }
 /**
  * Read and parse a PackageObject.
  *
- * @param repoPath - Path to .e3 repository
+ * @param storage - Storage backend
+ * @param repo - Repository identifier
  * @param name - Package name
  * @param version - Package version
  * @returns Parsed PackageObject
  * @throws {PackageNotFoundError} If package doesn't exist
  */
-export async function packageRead(repoPath, name, version) {
-    const hash = await packageResolve(repoPath, name, version);
-    const data = await objectRead(repoPath, hash);
+export async function packageRead(storage, repo, name, version) {
+    const hash = await packageResolve(storage, repo, name, version);
+    const data = await storage.objects.read(repo, hash);
     const decoder = decodeBeast2For(PackageObjectType);
-    return decoder(Buffer.from(data));
+    try {
+        return decoder(Buffer.from(data));
+    }
+    catch (err) {
+        throw new Error(`Failed to decode package ${name}@${version} (hash: ${hash}, size: ${data.byteLength} bytes): ${err.message}`);
+    }
 }
 /**
  * Fixed mtime for deterministic zip output (Unix epoch)
@@ -201,16 +246,17 @@ const DETERMINISTIC_MTIME = new Date(0);
  *
  * Collects the package object and all transitively referenced objects.
  *
- * @param repoPath - Path to .e3 repository
+ * @param storage - Storage backend
+ * @param repo - Repository identifier
  * @param name - Package name
  * @param version - Package version
  * @param zipPath - Path to write the .zip file
  * @returns Export result with package hash and object count
  */
-export async function packageExport(repoPath, name, version, zipPath) {
+export async function packageExport(storage, repo, name, version, zipPath, options) {
     const partialPath = `${zipPath}.partial`;
     // Resolve package to hash
-    const packageHash = await packageResolve(repoPath, name, version);
+    const packageHash = await packageResolve(storage, repo, name, version);
     // Create zip file
     const zipfile = new yazl.ZipFile();
     // Track which objects we've added to avoid duplicates
@@ -220,9 +266,11 @@ export async function packageExport(repoPath, name, version, zipPath) {
         if (addedObjects.has(hash))
             return;
         addedObjects.add(hash);
-        const data = await objectRead(repoPath, hash);
-        const zipPath = `objects/${hash.slice(0, 2)}/${hash.slice(2)}.beast2`;
-        zipfile.addBuffer(Buffer.from(data), zipPath, { mtime: DETERMINISTIC_MTIME });
+        const data = await storage.objects.read(repo, hash);
+        const objPath = `objects/${hash.slice(0, 2)}/${hash.slice(2)}.beast2`;
+        zipfile.addBuffer(Buffer.from(data), objPath, { mtime: DETERMINISTIC_MTIME });
+        if (options?.onProgress)
+            await options.onProgress({ objectsProcessed: addedObjects.size });
     };
     // Helper to collect children from a tree object
     // Tree objects are encoded as structs with DataRef fields
@@ -246,7 +294,7 @@ export async function packageExport(repoPath, name, version, zipPath) {
             try {
                 await addObject(potentialHash);
                 // Recursively collect children from this object
-                const childData = await objectRead(repoPath, potentialHash);
+                const childData = await storage.objects.read(repo, potentialHash);
                 await collectTreeChildren(childData);
             }
             catch {
@@ -258,20 +306,34 @@ export async function packageExport(repoPath, name, version, zipPath) {
     // Add the package object first
     await addObject(packageHash);
     // Load and parse the package object
-    const packageData = await objectRead(repoPath, packageHash);
+    const packageData = await storage.objects.read(repo, packageHash);
     const decoder = decodeBeast2For(PackageObjectType);
     const packageObject = decoder(Buffer.from(packageData));
-    // Collect all task objects
+    // Collect all task objects and their commandIr references
+    const taskDecoder = decodeBeast2For(TaskObjectType);
     for (const taskHash of packageObject.tasks.values()) {
         await addObject(taskHash);
-        // Note: Task objects reference datasets by path, not by hash,
-        // so we don't need to recursively collect from them
+        // Task objects contain commandIr hashes that must also be exported
+        const taskData = await storage.objects.read(repo, taskHash);
+        const taskObject = taskDecoder(Buffer.from(taskData));
+        // The commandIr is a hash reference to an IR object
+        await addObject(taskObject.commandIr);
+        // Recursively collect any objects referenced by the IR
+        const irData = await storage.objects.read(repo, taskObject.commandIr);
+        await collectTreeChildren(irData);
+    }
+    // Collect value objects from inline per-dataset refs and write data/ ref files
+    if (packageObject.data.refs instanceof Map) {
+        const refEncoder = encodeBeast2For(DatasetRefType);
+        for (const [refPath, ref] of packageObject.data.refs) {
+            if (ref.type === 'value' && typeof ref.value?.hash === 'string') {
+                await addObject(ref.value.hash);
+            }
+            // Write DatasetRef to data/ dir in zip for roundtrip compatibility
+            const refData = refEncoder(ref);
+            zipfile.addBuffer(Buffer.from(refData), `data/${refPath}.ref`, { mtime: DETERMINISTIC_MTIME });
+        }
     }
-    // Collect the root tree and all its children
-    const rootTreeHash = packageObject.data.value;
-    await addObject(rootTreeHash);
-    const rootTreeData = await objectRead(repoPath, rootTreeHash);
-    await collectTreeChildren(rootTreeData);
     // Write the package ref
     const refPath = `packages/${name}/${version}`;
     zipfile.addBuffer(Buffer.from(packageHash + '\n'), refPath, { mtime: DETERMINISTIC_MTIME });

package/dist/src/packages.js.map

@@ -1 +1 @@
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package/dist/src/packages.spec.d.ts

@@ -0,0 +1,6 @@
+/**
+ * Copyright (c) 2025 Elara AI Pty Ltd
+ * Licensed under BSL 1.1. See LICENSE for details.
+ */
+export {};
+//# sourceMappingURL=packages.spec.d.ts.map

package/dist/src/packages.spec.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"packages.spec.d.ts","sourceRoot":"","sources":["../../src/packages.spec.ts"],"names":[],"mappings":"AAAA;;;GAGG"}