@el-j/magic-agent-helix 4.0.0-beta.3 → 4.0.0-beta.4

package/dist/cli.mjs

@@ -6,7 +6,7 @@ import { resolve as ne, dirname as se, join as ie } from "node:path";
 import { fileURLToPath as U } from "node:url";
 import { Command as re } from "commander";
 import t from "picocolors";
-import { loadUserConfig as N, mergeConfigs as L, PluginRegistry as C, getFormatter as Y, validateInstructions as ae } from "@el-j/magic-helix-core";
+import { loadUserConfig as O, mergeConfigs as L, PluginRegistry as C, getFormatter as Y, validateInstructions as ae } from "@el-j/magic-helix-core";
 import W from "inquirer";
 import j from "ora";
 import q from "gradient-string";
@@ -14,7 +14,7 @@ import { glob as ce } from "glob";
 async function le() {
   console.log(t.cyan(`🧹 Cleaning generated instruction files...
 `));
-  const e = j("Loading configuration...").start(), n = N(), s = L(n);
+  const e = j("Loading configuration...").start(), n = O(), s = L(n);
   e.succeed("Configuration loaded.");
   const r = d.resolve(
     process.cwd(),
@@ -72,9 +72,9 @@ async function le() {
     )
   );
 }
-const _ = "magic-helix.config.json", O = "ai_templates", ge = {
+const _ = "magic-helix.config.json", I = "ai_templates", ge = {
   target: "github-copilot",
-  templateDirectory: O,
+  templateDirectory: I,
   outputDirectory: ".github/instructions",
   dependencyTagMap: {
     // "my-internal-package": "domain-my-rules"
@@ -94,7 +94,7 @@ const _ = "magic-helix.config.json", O = "ai_templates", ge = {
 async function ue() {
   const e = j(
     t.bold("Initializing Magic Helix for custom rules...")
-  ).start(), n = d.resolve(process.cwd(), _), s = d.resolve(process.cwd(), O);
+  ).start(), n = d.resolve(process.cwd(), _), s = d.resolve(process.cwd(), I);
   if (p.existsSync(n)) {
     e.stop();
     const { overwrite: a } = await W.prompt([
@@ -127,7 +127,7 @@ async function ue() {
   const r = d.resolve(s, "my-custom-rule.md");
   p.existsSync(r) ? e.succeed(
     t.green(
-      `Templates directory ${t.bold(O)} already exists.`
+      `Templates directory ${t.bold(I)} already exists.`
     )
   ) : (p.writeFileSync(
     r,
@@ -138,7 +138,7 @@ async function ue() {
     "utf-8"
   ), e.succeed(
     t.green(
-      `Created templates directory and example file: ${t.bold(O)}`
+      `Created templates directory and example file: ${t.bold(I)}`
     )
   )), console.log(
     q.pastel.multiline(
@@ -149,7 +149,7 @@ async function ue() {
 Next steps:`)), console.log(
     `  1. Edit ${t.bold(_)} to define your team's "tags".`
   ), console.log(
-    `  2. Add your custom .md instruction files to ${t.bold(O)}.`
+    `  2. Add your custom .md instruction files to ${t.bold(I)}.`
   ), console.log(
     `  3. Run ${t.bold("npx @el-j/magic-agent-helix run")} to generate your files.`
   );
@@ -157,7 +157,7 @@ Next steps:`)), console.log(
 async function de() {
   console.log(t.cyan(`📋 Listing project information...
 `));
-  const e = j("Loading configuration...").start(), n = N(), s = L(n);
+  const e = j("Loading configuration...").start(), n = O(), s = L(n);
   e.succeed("Configuration loaded.");
   const { dependencyTagMap: r, configFileTagMap: a, fileGlobTagMap: o, tagTemplateMap: c } = s, i = j("Scanning for projects...").start(), l = await fe();
   if (l.length === 0) {
@@ -458,7 +458,7 @@ function $(e, n) {
 }
 async function we(e = {}) {
   Q(e);
-  const n = j("Loading configurations...").start(), s = N(e.config), r = L(s);
+  const n = j("Loading configurations...").start(), s = O(e.config), r = L(s);
   e.target && (r.target = e.target), n.succeed("Configuration loaded.");
   const { dependencyTagMap: a, configFileTagMap: o, fileGlobTagMap: c, tagTemplateMap: i } = r, l = d.resolve(
     process.cwd(),
@@ -500,10 +500,10 @@ async function we(e = {}) {
     t.cyan(`
 Refreshing instruction files in ${r.outputDirectory}...`)
   );
-  let D = 0, E = 0;
+  let D = 0, N = 0;
   for (const y of w) {
     if (y.tags.size === 0) {
-      console.log(t.gray(`  Skipping: ${y.name} (No matching tags)`)), E++;
+      console.log(t.gray(`  Skipping: ${y.name} (No matching tags)`)), N++;
       continue;
     }
     console.log(t.bold(`  Processing: ${y.name}`)), console.log(t.gray(`    Tags: ${[...y.tags].join(", ")}`));
@@ -539,7 +539,7 @@ ${k}`;
     }
   }
   console.log(`
-✨ Refresh complete!`), console.log(t.green(`   Updated: ${D} files`)), console.log(t.gray(`   Skipped: ${E} projects`));
+✨ Refresh complete!`), console.log(t.green(`   Updated: ${D} files`)), console.log(t.gray(`   Skipped: ${N} projects`));
 }
 async function $e() {
   const e = [], n = process.cwd(), s = C.getInstance();
@@ -682,7 +682,7 @@ async function J(e = {}) {
     q.pastel.multiline("🤖 Running AI Convention Aligner...")
   ), n.dryRun && $("normal", s) && console.log(t.yellow(`🔍 DRY RUN MODE - No files will be written
 `));
-  const r = j("Loading configurations...").start(), a = N(n.config), o = L(a);
+  const r = j("Loading configurations...").start(), a = O(n.config), o = L(a);
   n.outputDir && (o.outputDirectory = n.outputDir), n.target && (o.target = n.target), r.succeed("Configuration loaded.");
   const { dependencyTagMap: c, configFileTagMap: i, fileGlobTagMap: l, tagTemplateMap: g } = o, u = d.resolve(
     process.cwd(),
@@ -714,7 +714,7 @@ Supported project types: Node.js, Python, Go, Rust, Java, Ruby, PHP, C#, Swift,
   }
   m.succeed(`Found ${v.length} projects.`);
   const D = j("Analyzing project tags...").start();
-  let E = 0;
+  let N = 0;
   for (const f of v) {
     if (n.project && f.name !== n.project) {
       $("verbose", s) && console.log(t.gray(`Skipping ${f.name} (not target project)`));
@@ -725,9 +725,9 @@ Supported project types: Node.js, Python, Go, Rust, Java, Ruby, PHP, C#, Swift,
       c,
       i,
       l
-    ), E += f.tags.size;
+    ), N += f.tags.size;
   }
-  D.succeed(`Project analysis complete. Found ${E} tags.`), n.dryRun ? $("verbose", s) && console.log(t.gray(`Would ensure directory: ${h}`)) : be(h);
+  D.succeed(`Project analysis complete. Found ${N} tags.`), n.dryRun ? $("verbose", s) && console.log(t.gray(`Would ensure directory: ${h}`)) : be(h);
   let y = g;
   if (n.template) {
     const f = n.template.split(",").map((x) => x.trim());
@@ -735,8 +735,8 @@ Supported project types: Node.js, Python, Go, Rust, Java, Ruby, PHP, C#, Swift,
     for (const [x, R] of Object.entries(g)) {
       const k = R.filter((b) => f.some((A) => {
         if (A.includes("*")) {
-          const I = new RegExp(A.replace(/\*/g, ".*"));
-          return I.test(b.template) || I.test(x);
+          const E = new RegExp(A.replace(/\*/g, ".*"));
+          return E.test(b.template) || E.test(x);
         }
         return b.template.includes(A) || x.includes(A);
       }));
@@ -797,7 +797,7 @@ Generating instruction files in ${o.outputDirectory}...`)
       if (k)
         for (const b of k) {
           F++;
-          const A = b.inlineContent ?? Re(u, b.template), I = b.inlineContent ? "Plugin" : "Custom";
+          const A = b.inlineContent ?? Re(u, b.template), E = b.inlineContent ? "Plugin" : "Custom";
           if (!A) {
             console.warn(t.yellow(`    ⚠️  Template not found: ${b.template}`));
             continue;
@@ -810,11 +810,11 @@ Generating instruction files in ${o.outputDirectory}...`)
 ${X}`, G = b.suffix, ee = d.join(h, G);
           P.push(G), n.dryRun ? $("normal", s) && console.log(
             t.cyan(
-              `    📝 Would generate: ${t.bold(G)} (from ${I})`
+              `    📝 Would generate: ${t.bold(G)} (from ${E})`
             )
           ) : (p.writeFileSync(ee, Z), $("normal", s) && console.log(
             t.green(
-              `    ✅ Generated: ${t.bold(G)} (from ${I})`
+              `    ✅ Generated: ${t.bold(G)} (from ${E})`
             )
           ));
         }
@@ -902,22 +902,22 @@ async function Se() {
       continue;
     }
     for (const o of a) {
-      const c = `${o.name}.md`;
-      let i = null;
+      const i = `${o.name.replace(/^lang-/, "").replace(/-core$/, "")}.instructions.md`;
+      let l = null;
       try {
-        i = typeof o.content == "function" ? await o.content() : o.content;
-      } catch (l) {
+        l = typeof o.content == "function" ? await o.content() : o.content;
+      } catch (g) {
         console.warn(
           t.yellow(
-            `⚠️  Plugin ${r.name} template ${o.name} failed to load: ${l.message}`
+            `⚠️  Plugin ${r.name} template ${o.name} failed to load: ${g.message}`
           )
         );
       }
-      for (const l of o.tags)
-        s[l] || (s[l] = []), s[l].push({
+      for (const g of o.tags)
+        s[g] || (s[g] = []), s[g].push({
           template: `plugin:${r.name}/${o.name}`,
-          suffix: c,
-          inlineContent: i ?? void 0
+          suffix: i,
+          inlineContent: l ?? void 0
         });
     }
   }
@@ -1043,7 +1043,7 @@ async function ke() {
     t.cyan(`🔍 Validating instruction files with quality scoring...
 `)
   );
-  const e = j("Loading configuration...").start(), n = N(), s = L(n);
+  const e = j("Loading configuration...").start(), n = O(), s = L(n);
   e.succeed("Configuration loaded.");
   const r = d.resolve(
     process.cwd(),
@@ -1167,8 +1167,8 @@ async function ze() {
     ), process.exit(1);
   }
 }
-const Ee = U(import.meta.url), V = process.argv[1] ? te(ne(process.argv[1])) : null;
-V && Ee === V && ze();
+const Ne = U(import.meta.url), V = process.argv[1] ? te(ne(process.argv[1])) : null;
+V && Ne === V && ze();
 export {
   ze as main
 };

package/dist/cli.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"cli.mjs","sources":["../src/commands/clean.ts","../src/commands/init.ts","../src/commands/list.ts","../src/commands/plugins.ts","../src/utils/file-extensions.ts","../src/utils/cli-options.ts","../src/commands/refresh.ts","../src/commands/run.ts","../src/commands/validate.ts","../src/cli.ts"],"sourcesContent":["import * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport { loadUserConfig, mergeConfigs } from '@el-j/magic-helix-core';\nimport inquirer from 'inquirer';\nimport ora from 'ora';\nimport pc from 'picocolors';\n\n/**\n * The 'clean' command.\n * Removes all generated instruction files.\n */\nexport async function clean() {\n  console.log(pc.cyan('🧹 Cleaning generated instruction files...\\n'));\n\n  const spinner = ora('Loading configuration...').start();\n\n  // Load config to find output directory\n  const userConfig = loadUserConfig();\n  const config = mergeConfigs(userConfig);\n  spinner.succeed('Configuration loaded.');\n\n  const targetDir = path.resolve(\n    process.cwd(),\n    config.outputDirectory as string,\n  );\n\n  // Check if directory exists\n  if (!fs.existsSync(targetDir)) {\n    console.log(\n      pc.yellow(\n        `⚠️  Output directory ${config.outputDirectory} does not exist. Nothing to clean.`,\n      ),\n    );\n    return;\n  }\n\n  // Find all .md files\n  const files = fs.readdirSync(targetDir).filter((f) => f.endsWith('.md'));\n\n  if (files.length === 0) {\n    console.log(pc.gray('No instruction files found. Nothing to clean.'));\n    return;\n  }\n\n  // Show files and ask for confirmation\n  console.log(\n    pc.yellow(`Found ${files.length} instruction file(s) to delete:\\n`),\n  );\n  for (const file of files) {\n    console.log(pc.gray(`  - ${file}`));\n  }\n  console.log();\n\n  const { confirm } = await inquirer.prompt([\n    {\n      type: 'confirm',\n      name: 'confirm',\n      message: pc.red(\n        `Are you sure you want to delete all ${files.length} file(s)?`,\n      ),\n      default: false,\n    },\n  ]);\n\n  if (!confirm) {\n    console.log(pc.yellow('Clean cancelled.'));\n    return;\n  }\n\n  // Delete files\n  const deleteSpinner = ora('Deleting files...').start();\n  let deleteCount = 0;\n  let errorCount = 0;\n\n  for (const file of files) {\n    try {\n      fs.unlinkSync(path.join(targetDir, file));\n      deleteCount++;\n    } catch (e) {\n      console.error(\n        pc.red(`  ❌ Error deleting ${file}: ${(e as Error).message}`),\n      );\n      errorCount++;\n    }\n  }\n\n  if (errorCount === 0) {\n    deleteSpinner.succeed(\n      pc.green(`✅ Successfully deleted ${deleteCount} file(s).`),\n    );\n  } else {\n    deleteSpinner.warn(\n      pc.yellow(\n        `⚠️  Deleted ${deleteCount} file(s), ${errorCount} error(s) occurred.`,\n      ),\n    );\n  }\n}\n","import * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport type { Config } from '@el-j/magic-helix-core';\nimport gradient from 'gradient-string';\nimport inquirer from 'inquirer';\nimport ora from 'ora';\nimport pc from 'picocolors';\n\n// --- CONFIGURATION ---\nconst CONFIG_FILENAME = 'magic-helix.config.json';\nconst DEFAULT_TEMPLATE_DIR = 'ai_templates';\n\n// This is the *minimal* config file 'init' will create.\n// It's designed for users who want to *extend* the built-in rules.\nconst MINIMAL_USER_CONFIG: Config = {\n  target: 'github-copilot',\n  templateDirectory: DEFAULT_TEMPLATE_DIR,\n  outputDirectory: '.github/instructions',\n  dependencyTagMap: {\n    // \"my-internal-package\": \"domain-my-rules\"\n  },\n  configFileTagMap: {\n    // \"my-custom-config.json\": \"domain-my-rules\"\n  },\n  fileGlobTagMap: {\n    // \"src/specific-folder/**/*.ts\": \"domain-my-rules\"\n  },\n  tagTemplateMap: {\n    // \"domain-my-rules\": [\n    //   { \"template\": \"my-custom-rule.md\", \"suffix\": \"my-rule.md\" }\n    // ]\n  },\n};\n\n/**\n * The 'init' command.\n * Creates a minimal config file and template directory\n * for users who want to *extend* the built-in conventions.\n */\nexport async function init() {\n  const spinner = ora(\n    pc.bold('Initializing Magic Helix for custom rules...'),\n  ).start();\n\n  const configPath = path.resolve(process.cwd(), CONFIG_FILENAME);\n  const templatePath = path.resolve(process.cwd(), DEFAULT_TEMPLATE_DIR);\n\n  // Check if config file already exists\n  if (fs.existsSync(configPath)) {\n    spinner.stop();\n    const { overwrite } = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'overwrite',\n        message: `A ${CONFIG_FILENAME} file already exists. Do you want to overwrite it with a minimal example?`,\n        default: false,\n      },\n    ]);\n    if (!overwrite) {\n      spinner.warn(pc.yellow('Operation cancelled.'));\n      return;\n    }\n    spinner.start('Overwriting existing config...');\n  }\n\n  // 1. Write the minimal config file\n  try {\n    fs.writeFileSync(\n      configPath,\n      JSON.stringify(MINIMAL_USER_CONFIG, null, 2),\n      'utf-8',\n    );\n    spinner.succeed(\n      pc.green(`Created minimal config file: ${pc.bold(CONFIG_FILENAME)}`),\n    );\n  } catch (e) {\n    spinner.fail(pc.red(`Error writing config file: ${(e as Error).message}`));\n    return;\n  }\n\n  spinner.start('Creating templates directory...');\n\n  // 2. Create the templates directory\n  if (!fs.existsSync(templatePath)) {\n    fs.mkdirSync(templatePath, { recursive: true });\n  }\n\n  // 3. Copy *one* example file to show them how it works\n  const exampleTemplatePath = path.resolve(templatePath, 'my-custom-rule.md');\n  if (!fs.existsSync(exampleTemplatePath)) {\n    fs.writeFileSync(\n      exampleTemplatePath,\n      '# My Team\\'s Custom Rule\\n- This rule is specific to our \"domain-my-rules\" tag.\\n- ALWAYS follow this important pattern.\\n',\n      'utf-8',\n    );\n    spinner.succeed(\n      pc.green(\n        `Created templates directory and example file: ${pc.bold(DEFAULT_TEMPLATE_DIR)}`,\n      ),\n    );\n  } else {\n    spinner.succeed(\n      pc.green(\n        `Templates directory ${pc.bold(DEFAULT_TEMPLATE_DIR)} already exists.`,\n      ),\n    );\n  }\n\n  console.log(\n    gradient.pastel.multiline(\n      '\\n✨ Success! Your project is ready for custom rules. ✨',\n    ),\n  );\n  console.log(pc.cyan('\\nNext steps:'));\n  console.log(\n    `  1. Edit ${pc.bold(CONFIG_FILENAME)} to define your team's \"tags\".`,\n  );\n  console.log(\n    `  2. Add your custom .md instruction files to ${pc.bold(DEFAULT_TEMPLATE_DIR)}.`,\n  );\n  console.log(\n    `  3. Run ${pc.bold('npx @el-j/magic-agent-helix run')} to generate your files.`,\n  );\n}\n","import * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport type {\n  ConfigFileTagMap,\n  DependencyTagMap,\n  FileGlobTagMap,\n} from '@el-j/magic-helix-core';\nimport {\n  PluginRegistry,\n  loadUserConfig,\n  mergeConfigs,\n} from '@el-j/magic-helix-core';\nimport ora from 'ora';\nimport pc from 'picocolors';\n\n/**\n * The 'list' command.\n * Shows detected projects, tags, and templates without generating files.\n */\nexport async function list() {\n  console.log(pc.cyan('📋 Listing project information...\\n'));\n\n  const spinner = ora('Loading configuration...').start();\n\n  // 1. Load Configs\n  const userConfig = loadUserConfig();\n  const config = mergeConfigs(userConfig);\n  spinner.succeed('Configuration loaded.');\n\n  const { dependencyTagMap, configFileTagMap, fileGlobTagMap, tagTemplateMap } =\n    config;\n\n  // 2. Find all projects\n  const projectSpinner = ora('Scanning for projects...').start();\n  const projects = await findProjects();\n  if (projects.length === 0) {\n    projectSpinner.warn(pc.yellow('No projects found.'));\n    return;\n  }\n  projectSpinner.succeed(`Found ${projects.length} projects.`);\n\n  // 3. Analyze projects\n  const analyzeSpinner = ora('Analyzing projects...').start();\n  for (const project of projects) {\n    await analyzeProject(\n      project,\n      dependencyTagMap,\n      configFileTagMap,\n      fileGlobTagMap,\n    );\n  }\n  analyzeSpinner.succeed('Analysis complete.\\n');\n\n  // 4. Display results\n  console.log(pc.cyan(pc.bold('Projects & Tags:\\n')));\n\n  for (const project of projects) {\n    console.log(pc.bold(`📦 ${project.name}`));\n    console.log(pc.gray(`   Path: ${project.path}`));\n\n    if (project.tags.size === 0) {\n      console.log(pc.yellow('   No tags detected'));\n    } else {\n      console.log(pc.green(`   Tags: ${[...project.tags].join(', ')}`));\n\n      // Show which templates would be applied\n      const templates: string[] = [];\n      for (const tag of project.tags) {\n        const tagTemplates = tagTemplateMap[tag];\n        if (tagTemplates) {\n          for (const t of tagTemplates) {\n            templates.push(`${project.name}.${t.suffix}`);\n          }\n        }\n      }\n\n      if (templates.length > 0) {\n        console.log(pc.gray(`   Would generate: ${templates.join(', ')}`));\n      }\n    }\n    console.log(); // Empty line\n  }\n\n  // 5. Show configuration summary\n  console.log(pc.cyan(pc.bold('Configuration:\\n')));\n  console.log(pc.gray(`   Output directory: ${config.outputDirectory}`));\n  console.log(pc.gray(`   Template directory: ${config.templateDirectory}`));\n  console.log(pc.gray(`   Target: ${config.target}`));\n}\n\n// --- HELPER FUNCTIONS ---\n\ninterface Project {\n  name: string;\n  path: string;\n  tags: Set<string>;\n}\n\nasync function findProjects(): Promise<Project[]> {\n  const projects: Project[] = [];\n  const rootPath = process.cwd();\n\n  // Use the new polyglot detection\n  const registry = PluginRegistry.getInstance();\n  await registry.initialize();\n  const detectedResults = await registry.detectAllProjects(rootPath);\n  const detectedProjects = detectedResults.map((r) => r.metadata);\n\n  if (detectedProjects.length === 0) {\n    return [];\n  }\n\n  for (const proj of detectedProjects) {\n    const relativePath = path.relative(rootPath, proj.projectPath);\n    projects.push({\n      name: proj.name || path.basename(proj.projectPath),\n      path: relativePath || '.',\n      tags: new Set<string>(),\n    });\n  }\n\n  return projects;\n}\n\nasync function analyzeProject(\n  project: Project,\n  depMap: DependencyTagMap,\n  configMap: ConfigFileTagMap,\n  globMap: FileGlobTagMap,\n) {\n  const projectRoot = path.resolve(process.cwd(), project.path);\n\n  // Analyze dependencies from any manifest file\n  try {\n    const registry = PluginRegistry.getInstance();\n    const detectedResults = await registry.detectAllProjects(projectRoot);\n    const detectedProjects = detectedResults.map((r) => r.metadata);\n    if (detectedProjects.length > 0) {\n      const projectMetadata = detectedProjects[0]; // Use first match\n\n      if (projectMetadata.tags?.length) {\n        for (const tag of projectMetadata.tags) {\n          project.tags.add(tag);\n        }\n      }\n\n      for (const dep in projectMetadata.dependencies) {\n        // Check both the full dependency name and the package/module name\n        if (depMap[dep]) {\n          project.tags.add(depMap[dep]);\n        }\n\n        // For scoped packages like @scope/pkg or group:artifact, try the base name too\n        const baseName = dep.split(/[@/:]/g).pop();\n        if (baseName && depMap[baseName]) {\n          project.tags.add(depMap[baseName]);\n        }\n      }\n    }\n  } catch (_e) {\n    // Skip errors\n  }\n\n  // Analyze config files\n  try {\n    for (const file in configMap) {\n      const tag = configMap[file];\n      const configPath = path.join(projectRoot, file);\n      if (fs.existsSync(configPath)) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (_e) {\n    // Skip errors\n  }\n\n  // Analyze file globs\n  try {\n    const { glob } = await import('glob');\n    for (const pattern in globMap) {\n      const tag = globMap[pattern];\n      const results = await glob(pattern, {\n        cwd: projectRoot,\n        nodir: true,\n        dot: true,\n      });\n      if (results.length > 0) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (_e) {\n    // Skip errors\n  }\n}\n","import { PluginRegistry } from '@el-j/magic-helix-core';\nimport pc from 'picocolors';\n\ninterface PluginsOptions {\n  verbose?: boolean;\n}\n\nexport async function pluginsCommand(\n  options: PluginsOptions = {},\n): Promise<void> {\n  console.log(pc.blue('🔌 MagicAgentHelix Plugin System'));\n  console.log();\n\n  try {\n    const registry = PluginRegistry.getInstance();\n    await registry.initialize({ verbose: options.verbose });\n\n    const plugins = await registry.getAllPlugins();\n    const stats = registry.getStatistics();\n\n    if (plugins.length === 0) {\n      console.log(pc.yellow('⚠️  No plugins loaded'));\n      return;\n    }\n\n    console.log(pc.green(`✅ ${plugins.length} plugin(s) loaded successfully`));\n    console.log();\n\n    // Display plugins grouped by priority\n    const sortedPlugins = plugins.sort((a, b) => b.priority - a.priority);\n\n    console.log(pc.bold('Available Language Plugins:'));\n    console.log('──────────────────────────────');\n\n    for (const plugin of sortedPlugins) {\n      const priorityColor =\n        plugin.priority >= 90\n          ? 'green'\n          : plugin.priority >= 70\n            ? 'yellow'\n            : 'cyan';\n\n      console.log(\n        `${pc.bold(plugin.displayName)} (${pc[priorityColor](`priority: ${plugin.priority}`)}) v${plugin.version}`,\n      );\n\n      if (options.verbose) {\n        const templates = plugin.getTemplates();\n        if (templates.length > 0) {\n          console.log(\n            `  📝 Templates: ${templates.map((t) => t.name).join(', ')}`,\n          );\n        }\n\n        const tagMap = plugin.getDependencyTagMap?.();\n        if (tagMap && Object.keys(tagMap).length > 0) {\n          console.log(\n            `  🏷️  Detects: ${Object.keys(tagMap).slice(0, 3).join(', ')}${Object.keys(tagMap).length > 3 ? '...' : ''}`,\n          );\n        }\n        console.log();\n      }\n    }\n\n    if (!options.verbose) {\n      console.log();\n      console.log(pc.dim('💡 Use --verbose for detailed plugin information'));\n    }\n\n    console.log();\n    console.log(pc.bold('System Statistics:'));\n    console.log('──────────────────');\n    console.log(`📊 Total plugins: ${stats.totalLoaded}`);\n    console.log(`⚡ Average load time: ${stats.averageLoadTime.toFixed(1)}ms`);\n    console.log(`❌ Load errors: ${stats.totalErrors}`);\n\n    if (stats.totalErrors > 0 && options.verbose) {\n      const errors = registry.getLoadErrors();\n      console.log();\n      console.log(pc.red('Load Errors:'));\n      console.log('────────────');\n      for (const error of errors) {\n        console.log(`❌ ${error.source.identifier}: ${error.error.message}`);\n      }\n    }\n  } catch (error) {\n    console.error(\n      pc.red('❌ Failed to load plugin registry:'),\n      (error as Error).message,\n    );\n    process.exit(1);\n  }\n}\n","/**\n * Utilities for mapping tags to appropriate file extensions\n */\n\nexport interface FileExtensionMapping {\n  extensions: string[];\n  description: string;\n}\n\n/**\n * Maps tags to their associated file extensions\n */\nexport const TAG_FILE_EXTENSIONS: Record<string, FileExtensionMapping> = {\n  // Frameworks\n  'framework-vue': {\n    extensions: ['vue'],\n    description: 'Vue components',\n  },\n  'framework-react': {\n    extensions: ['tsx', 'jsx', 'ts', 'js'],\n    description: 'React components',\n  },\n  'framework-angular': {\n    extensions: ['ts'],\n    description: 'Angular components',\n  },\n  'framework-nestjs': {\n    extensions: ['ts'],\n    description: 'NestJS controllers and services',\n  },\n\n  // Languages\n  'lang-typescript': {\n    extensions: ['ts', 'tsx'],\n    description: 'TypeScript files',\n  },\n  'lang-javascript': {\n    extensions: ['js', 'jsx'],\n    description: 'JavaScript files',\n  },\n  'lang-go': {\n    extensions: ['go'],\n    description: 'Go files',\n  },\n  'lang-python': {\n    extensions: ['py'],\n    description: 'Python files',\n  },\n  'lang-rust': {\n    extensions: ['rs'],\n    description: 'Rust files',\n  },\n  'rust-embedded': {\n    extensions: ['rs'],\n    description: 'Embedded Rust files',\n  },\n  hardware2rust: {\n    extensions: ['rs'],\n    description: 'Hardware2Rust project files',\n  },\n  'lang-java': {\n    extensions: ['java'],\n    description: 'Java files',\n  },\n  'lang-swift': {\n    extensions: ['swift'],\n    description: 'Swift files',\n  },\n  'lang-ruby': {\n    extensions: ['rb'],\n    description: 'Ruby files',\n  },\n  'lang-php': {\n    extensions: ['php'],\n    description: 'PHP files',\n  },\n  'lang-csharp': {\n    extensions: ['cs'],\n    description: 'C# files',\n  },\n  'lang-cpp': {\n    extensions: ['cpp', 'hpp', 'cc', 'h', 'cxx', 'hxx'],\n    description: 'C++ files',\n  },\n  'lang-c': {\n    extensions: ['c', 'h'],\n    description: 'C files',\n  },\n  'lang-kotlin': {\n    extensions: ['kt', 'kts'],\n    description: 'Kotlin files',\n  },\n  'lang-scala': {\n    extensions: ['scala', 'sc'],\n    description: 'Scala files',\n  },\n\n  // Styling\n  'style-tailwind': {\n    extensions: ['ts', 'tsx', 'js', 'jsx', 'vue'],\n    description: 'Files using Tailwind CSS',\n  },\n  'style-primevue': {\n    extensions: ['vue'],\n    description: 'Vue files with PrimeVue',\n  },\n  'style-mui': {\n    extensions: ['tsx', 'jsx'],\n    description: 'React files with Material UI',\n  },\n\n  // Testing\n  'test-vitest': {\n    extensions: ['test.ts', 'test.tsx', 'spec.ts', 'spec.tsx'],\n    description: 'Vitest test files',\n  },\n  'test-jest': {\n    extensions: [\n      'test.ts',\n      'test.tsx',\n      'test.js',\n      'test.jsx',\n      'spec.ts',\n      'spec.tsx',\n      'spec.js',\n      'spec.jsx',\n    ],\n    description: 'Jest test files',\n  },\n  'test-cypress': {\n    extensions: ['cy.ts', 'cy.js'],\n    description: 'Cypress test files',\n  },\n  'test-playwright': {\n    extensions: ['spec.ts', 'spec.js'],\n    description: 'Playwright test files',\n  },\n\n  // State management\n  'state-rxjs': {\n    extensions: ['ts', 'tsx'],\n    description: 'Files using RxJS',\n  },\n  'state-pinia': {\n    extensions: ['ts', 'vue'],\n    description: 'Vue files with Pinia',\n  },\n  'state-redux': {\n    extensions: ['ts', 'tsx', 'js', 'jsx'],\n    description: 'Files using Redux',\n  },\n  'state-zustand': {\n    extensions: ['ts', 'tsx', 'js', 'jsx'],\n    description: 'Files using Zustand',\n  },\n};\n\n/**\n * Get file extensions for a given tag\n */\nexport function getFileExtensionsForTag(tag: string): string[] {\n  return TAG_FILE_EXTENSIONS[tag]?.extensions || [];\n}\n\n/**\n * Build a precise glob pattern based on project path and tags\n */\nexport function buildPreciseGlobPattern(\n  projectPath: string,\n  tags: Set<string>,\n  excludePattern?: string,\n): string {\n  const allExtensions = new Set<string>();\n\n  // Collect all extensions from all tags\n  for (const tag of tags) {\n    const exts = getFileExtensionsForTag(tag);\n    for (const ext of exts) {\n      allExtensions.add(ext);\n    }\n  }\n\n  // Fallback to common extensions if no tags matched\n  if (allExtensions.size === 0) {\n    return `${projectPath}/src/**/*.{ts,js,vue,tsx,jsx}`;\n  }\n\n  // Build pattern\n  const extList = Array.from(allExtensions).join(',');\n  let pattern = `${projectPath}/src/**/*.{${extList}}`;\n\n  // Add exclude pattern if provided\n  if (excludePattern) {\n    // Convert exclude pattern to glob negation\n    const excludePatterns = excludePattern.split(',').map((p) => p.trim());\n    for (const exclude of excludePatterns) {\n      // Handle directory exclusions\n      if (exclude.endsWith('/**')) {\n        pattern += ` !(${projectPath}/src/${exclude})`;\n      } else if (exclude.includes('*')) {\n        pattern += ` !(${projectPath}/src/${exclude})`;\n      } else {\n        // Exact file match\n        pattern += ` !(${projectPath}/src/${exclude})`;\n      }\n    }\n  }\n\n  return pattern;\n}\n\n/**\n * Get a human-readable description of what file types apply\n */\nexport function getApplyToDescription(tags: Set<string>): string {\n  const descriptions: string[] = [];\n\n  for (const tag of tags) {\n    const mapping = TAG_FILE_EXTENSIONS[tag];\n    if (mapping) {\n      descriptions.push(mapping.description);\n    }\n  }\n\n  return descriptions.length > 0 ? descriptions.join(', ') : 'Source files';\n}\n","/**\n * Shared CLI options and types\n */\n\nexport interface CliOptions {\n  dryRun?: boolean;\n  force?: boolean;\n  skipPruning?: boolean;\n  outputDir?: string;\n  config?: string;\n  target?: 'github-copilot' | 'claude' | 'copilot-chat' | 'generic';\n  verbose?: boolean;\n  quiet?: boolean;\n  project?: string;\n  wizard?: boolean;\n  template?: string;\n  exclude?: string;\n}\n\n/**\n * Log level based on options\n */\nexport function getLogLevel(\n  options: CliOptions,\n): 'verbose' | 'normal' | 'quiet' {\n  if (options.quiet) return 'quiet';\n  if (options.verbose) return 'verbose';\n  return 'normal';\n}\n\n/**\n * Should we log this message at this level?\n */\nexport function shouldLog(\n  messageLevel: 'verbose' | 'normal' | 'error',\n  logLevel: 'verbose' | 'normal' | 'quiet',\n): boolean {\n  if (logLevel === 'quiet' && messageLevel !== 'error') return false;\n  if (logLevel === 'normal' && messageLevel === 'verbose') return false;\n  return true;\n}\n","import * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport type {\n  ConfigFileTagMap,\n  DependencyTagMap,\n  FileGlobTagMap,\n  TagTemplateMap,\n} from '@el-j/magic-helix-core';\nimport {\n  type AssistantTarget,\n  getFormatter,\n  loadUserConfig,\n  mergeConfigs,\n} from '@el-j/magic-helix-core';\nimport { PluginRegistry } from '@el-j/magic-helix-core';\nimport ora from 'ora';\nimport pc from 'picocolors';\nimport { buildPreciseGlobPattern } from '../utils/file-extensions';\n\n// --- TYPES ---\ninterface Project {\n  name: string;\n  path: string;\n  tags: Set<string>;\n}\n\nimport type { CliOptions } from '../utils/cli-options';\nimport { getLogLevel } from '../utils/cli-options';\n\n/**\n * The 'refresh' command.\n * Rescans the project and updates existing instruction files with new information.\n */\nexport async function refresh(options: CliOptions = {}) {\n  const _logLevel = getLogLevel(options);\n\n  const mainSpinner = ora('Loading configurations...').start();\n\n  // 1. Load Configs\n  const userConfig = loadUserConfig(options.config);\n  const config = mergeConfigs(userConfig);\n\n  // Override target if specified\n  if (options.target) {\n    config.target = options.target;\n  }\n\n  mainSpinner.succeed('Configuration loaded.');\n\n  const { dependencyTagMap, configFileTagMap, fileGlobTagMap, tagTemplateMap } =\n    config;\n\n  const userTemplateDir = path.resolve(\n    process.cwd(),\n    config.templateDirectory as string,\n  );\n  const targetDir = path.resolve(\n    process.cwd(),\n    config.outputDirectory as string,\n  );\n\n  // Get the formatter for the target assistant\n  const formatter = getFormatter(config.target as AssistantTarget);\n\n  // 2. Check if target directory exists\n  if (!fs.existsSync(targetDir)) {\n    console.log(\n      pc.yellow(\n        `⚠️  Output directory ${config.outputDirectory} does not exist.`,\n      ),\n    );\n    console.log(\n      pc.gray(`   Run 'magic-helix run' first to generate instruction files.`),\n    );\n    return;\n  }\n\n  // 3. Find all projects\n  const projectSpinner = ora('Scanning for projects...').start();\n  const projects = await findProjects();\n  if (projects.length === 0) {\n    projectSpinner.warn(\n      pc.yellow(\n        'No projects found. Make sure your root package.json has a \"workspaces\" field.',\n      ),\n    );\n    return;\n  }\n  projectSpinner.succeed(`Found ${projects.length} projects.`);\n\n  // 4. Analyze dependencies and tag projects\n  const analyzeSpinner = ora('Analyzing project tags...').start();\n  let totalTags = 0;\n  for (const project of projects) {\n    await analyzeProject(\n      project,\n      dependencyTagMap as DependencyTagMap,\n      configFileTagMap as ConfigFileTagMap,\n      fileGlobTagMap as FileGlobTagMap,\n    );\n    totalTags += project.tags.size;\n  }\n  analyzeSpinner.succeed(`Project analysis complete. Found ${totalTags} tags.`);\n\n  // 5. Update existing instruction files\n  console.log(\n    pc.cyan(`\\nRefreshing instruction files in ${config.outputDirectory}...`),\n  );\n\n  let updatedCount = 0;\n  let skippedCount = 0;\n\n  for (const project of projects) {\n    if (project.tags.size === 0) {\n      console.log(pc.gray(`  Skipping: ${project.name} (No matching tags)`));\n      skippedCount++;\n      continue;\n    }\n\n    console.log(pc.bold(`  Processing: ${project.name}`));\n    console.log(pc.gray(`    Tags: ${[...project.tags].join(', ')}`));\n\n    const globPattern = buildPreciseGlobPattern(project.path, project.tags);\n\n    for (const tag of project.tags) {\n      const templates = (tagTemplateMap as TagTemplateMap)[tag];\n      if (!templates) continue;\n\n      for (const t of templates) {\n        const outputFilename = `${project.name}.${t.suffix}`;\n        const outputPath = path.join(targetDir, outputFilename);\n\n        // Check if file exists\n        if (!fs.existsSync(outputPath)) {\n          console.log(\n            pc.yellow(`    ⚠️  File not found, skipping: ${outputFilename}`),\n          );\n          continue;\n        }\n\n        // Read template from user custom directory\n        const templateContent = readTemplate(userTemplateDir, t.template);\n        const source = 'Custom';\n\n        if (!templateContent) {\n          console.warn(pc.yellow(`    ⚠️  Template not found: ${t.template}`));\n          continue;\n        }\n\n        // Update header with new information\n        const header = formatter.getFrontmatter(globPattern, project.name);\n        const formattedContent = formatter.format(\n          templateContent,\n          globPattern,\n          project.name,\n        );\n        const fullContent = `${header}\\n${formattedContent}`;\n\n        // Write updated file\n        fs.writeFileSync(outputPath, fullContent);\n        updatedCount++;\n        console.log(\n          pc.green(\n            `    ✅ Refreshed: ${pc.bold(outputFilename)} (from ${source})`,\n          ),\n        );\n      }\n    }\n  }\n\n  console.log('\\n✨ Refresh complete!');\n  console.log(pc.green(`   Updated: ${updatedCount} files`));\n  console.log(pc.gray(`   Skipped: ${skippedCount} projects`));\n}\n\n// --- HELPER FUNCTIONS ---\n\nasync function findProjects(): Promise<Project[]> {\n  const projects: Project[] = [];\n  const rootPath = process.cwd();\n\n  // Use the new polyglot detection\n  const registry = PluginRegistry.getInstance();\n  await registry.initialize();\n  const detectedResults = await registry.detectAllProjects(rootPath);\n  const detectedProjects = detectedResults.map((r) => r.metadata);\n\n  if (detectedProjects.length === 0) {\n    return [];\n  }\n\n  for (const proj of detectedProjects) {\n    const relativePath = path.relative(rootPath, proj.projectPath);\n    projects.push({\n      name: proj.name || path.basename(proj.projectPath),\n      path: relativePath || '.',\n      tags: new Set<string>(),\n    });\n  }\n\n  return projects;\n}\n\nasync function analyzeProject(\n  project: Project,\n  depMap: DependencyTagMap,\n  configMap: ConfigFileTagMap,\n  globMap: FileGlobTagMap,\n) {\n  const projectRoot = path.resolve(process.cwd(), project.path);\n\n  // Strategy 1: Analyze dependencies from any manifest file\n  try {\n    const registry = PluginRegistry.getInstance();\n    const detectedResults = await registry.detectAllProjects(projectRoot);\n    const detectedProjects = detectedResults.map((r) => r.metadata);\n    if (detectedProjects.length > 0) {\n      const projectMetadata = detectedProjects[0]; // Use first match\n\n      if (projectMetadata.tags?.length) {\n        for (const tag of projectMetadata.tags) {\n          project.tags.add(tag);\n        }\n      }\n\n      for (const dep in projectMetadata.dependencies) {\n        // Check both the full dependency name and the package/module name\n        if (depMap[dep]) {\n          project.tags.add(depMap[dep]);\n        }\n\n        // For scoped packages like @scope/pkg or group:artifact, try the base name too\n        const baseName = dep.split(/[@/:]/g).pop();\n        if (baseName && depMap[baseName]) {\n          project.tags.add(depMap[baseName]);\n        }\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Could not analyze dependencies for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n\n  // Strategy 2: Analyze key config files\n  try {\n    for (const file in configMap) {\n      const tag = configMap[file];\n      const configPath = path.join(projectRoot, file);\n      if (fs.existsSync(configPath)) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Error scanning config files for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n\n  // Strategy 3: Analyze file globs\n  try {\n    const { glob } = await import('glob');\n    for (const pattern in globMap) {\n      const tag = globMap[pattern];\n      const results = await glob(pattern, {\n        cwd: projectRoot,\n        nodir: true,\n        dot: true,\n      });\n      if (results.length > 0) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Error scanning file globs for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n}\n\nfunction readTemplate(dir: string, templateFile: string): string | null {\n  const p = path.join(dir, templateFile);\n  try {\n    return fs.readFileSync(p, 'utf-8');\n  } catch (_e) {\n    return null;\n  }\n}\n","import * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport type {\n  ConfigFileTagMap,\n  DependencyTagMap,\n  FileGlobTagMap,\n  LanguagePlugin,\n  TagTemplateMap,\n} from '@el-j/magic-helix-core';\nimport {\n  type AssistantTarget,\n  PluginRegistry,\n  type TemplateDefinition,\n  getFormatter,\n  loadUserConfig,\n  mergeConfigs,\n} from '@el-j/magic-helix-core';\nimport { glob } from 'glob';\nimport gradient from 'gradient-string';\nimport inquirer from 'inquirer';\nimport ora from 'ora';\nimport pc from 'picocolors';\nimport type { CliOptions } from '../utils/cli-options';\nimport { getLogLevel, shouldLog } from '../utils/cli-options';\nimport { buildPreciseGlobPattern } from '../utils/file-extensions';\n\n// --- TYPES ---\ninterface Project {\n  name: string; // Sanitized package name, e.g., 'scope-my-app'\n  path: string; // Relative path from root, e.g., 'packages/my-app'\n  tags: Set<string>;\n}\n\ntype TemplateSource = {\n  template: string;\n  suffix: string;\n  inlineContent?: string;\n};\n\n/**\n * Interactive wizard to guide users through configuration options\n */\nasync function runWizard(): Promise<Partial<CliOptions>> {\n  console.log(\n    gradient.pastel.multiline('🤖 MagicAgentHelix Interactive Setup Wizard'),\n  );\n  console.log(\"Let's configure your AI instruction generation...\\n\");\n\n  const answers = await inquirer.prompt([\n    {\n      type: 'list',\n      name: 'target',\n      message: 'Which AI assistant are you using?',\n      choices: [\n        { name: 'GitHub Copilot', value: 'github-copilot' },\n        { name: 'Claude/Cursor', value: 'claude' },\n        { name: 'GitHub Copilot Chat', value: 'copilot-chat' },\n        { name: 'Generic Assistant', value: 'generic' },\n      ],\n      default: 'github-copilot',\n    },\n    {\n      type: 'confirm',\n      name: 'dryRun',\n      message:\n        'Would you like to preview what would be generated first (dry run)?',\n      default: true,\n    },\n    {\n      type: 'input',\n      name: 'outputDir',\n      message: 'Where should the instruction files be generated?',\n      default: '.ai',\n      when: (answers) => !answers.dryRun,\n    },\n    {\n      type: 'confirm',\n      name: 'force',\n      message: 'Overwrite existing files without prompting?',\n      default: false,\n      when: (answers) => !answers.dryRun,\n    },\n    {\n      type: 'list',\n      name: 'verbosity',\n      message: 'How much output would you like to see?',\n      choices: [\n        { name: 'Verbose (detailed information)', value: 'verbose' },\n        { name: 'Normal (standard output)', value: 'normal' },\n        { name: 'Quiet (minimal output)', value: 'quiet' },\n      ],\n      default: 'normal',\n    },\n  ]);\n\n  // Convert verbosity to CLI options\n  const options: Partial<CliOptions> = {\n    target: answers.target,\n    dryRun: answers.dryRun,\n  };\n\n  if (answers.outputDir) {\n    options.outputDir = answers.outputDir;\n  }\n\n  if (answers.force) {\n    options.force = answers.force;\n  }\n\n  if (answers.verbosity === 'verbose') {\n    options.verbose = true;\n  } else if (answers.verbosity === 'quiet') {\n    options.quiet = true;\n  }\n\n  console.log(pc.green('\\n✅ Configuration complete! Starting analysis...\\n'));\n\n  return options;\n}\n\n/**\n * The 'run' command.\n * Scans the monorepo and generates instruction files.\n */\nexport async function run(options: CliOptions = {}) {\n  // Run interactive wizard if requested\n  let effectiveOptions = options;\n  if (options.wizard) {\n    const wizardOptions = await runWizard();\n    // Merge wizard options with command line options (CLI options take precedence)\n    effectiveOptions = { ...wizardOptions, ...options };\n  }\n\n  const logLevel = getLogLevel(effectiveOptions);\n\n  if (shouldLog('normal', logLevel)) {\n    console.log(\n      gradient.pastel.multiline('🤖 Running AI Convention Aligner...'),\n    );\n  }\n\n  if (effectiveOptions.dryRun && shouldLog('normal', logLevel)) {\n    console.log(pc.yellow('🔍 DRY RUN MODE - No files will be written\\n'));\n  }\n\n  const mainSpinner = ora('Loading configurations...').start();\n\n  // 1. Load Configs (Built-in + Optional User)\n  const userConfig = loadUserConfig(effectiveOptions.config);\n  const config = mergeConfigs(userConfig);\n\n  // Override output directory if specified\n  if (effectiveOptions.outputDir) {\n    config.outputDirectory = effectiveOptions.outputDir;\n  }\n\n  // Override target if specified\n  if (effectiveOptions.target) {\n    config.target = effectiveOptions.target;\n  }\n\n  mainSpinner.succeed('Configuration loaded.');\n\n  const { dependencyTagMap, configFileTagMap, fileGlobTagMap, tagTemplateMap } =\n    config;\n\n  const userTemplateDir = path.resolve(\n    process.cwd(),\n    config.templateDirectory as string,\n  );\n  const targetDir = path.resolve(\n    process.cwd(),\n    config.outputDirectory as string,\n  );\n\n  // Get the formatter for the target assistant\n  const formatter = getFormatter(config.target as AssistantTarget);\n\n  // 2. Find all projects\n  const projectSpinner = ora('Scanning for projects...').start();\n  const projects = await findProjects();\n  if (projects.length === 0) {\n    projectSpinner.warn(\n      pc.yellow(\n        'No projects detected. The tool could not find any supported project types in the current directory.',\n      ),\n    );\n    console.log(\n      pc.gray(\n        '\\nSupported project types: Node.js, Python, Go, Rust, Java, Ruby, PHP, C#, Swift, C/C++, PlatformIO',\n      ),\n    );\n    console.log(\n      pc.gray(\n        'For monorepos, ensure your root package.json has a \"workspaces\" field.',\n      ),\n    );\n    console.log(\n      pc.gray(\n        'For standalone projects, ensure you have the appropriate manifest file (package.json, go.mod, Cargo.toml, platformio.ini, etc.)',\n      ),\n    );\n    return;\n  }\n  projectSpinner.succeed(`Found ${projects.length} projects.`);\n\n  // 3. Analyze dependencies and tag projects\n  const analyzeSpinner = ora('Analyzing project tags...').start();\n  let totalTags = 0;\n  for (const project of projects) {\n    // Skip if specific project requested and this isn't it\n    if (effectiveOptions.project && project.name !== effectiveOptions.project) {\n      if (shouldLog('verbose', logLevel)) {\n        console.log(pc.gray(`Skipping ${project.name} (not target project)`));\n      }\n      continue;\n    }\n\n    await analyzeProject(\n      project,\n      dependencyTagMap as DependencyTagMap,\n      configFileTagMap as ConfigFileTagMap,\n      fileGlobTagMap as FileGlobTagMap,\n    );\n    totalTags += project.tags.size;\n  }\n  analyzeSpinner.succeed(`Project analysis complete. Found ${totalTags} tags.`);\n\n  // 4. Ensure target directory exists\n  if (!effectiveOptions.dryRun) {\n    ensureTargetDir(targetDir);\n  } else if (shouldLog('verbose', logLevel)) {\n    console.log(pc.gray(`Would ensure directory: ${targetDir}`));\n  }\n\n  // Apply template filtering if specified\n  let filteredTagTemplateMap = tagTemplateMap as TagTemplateMap;\n  if (effectiveOptions.template) {\n    const templatePatterns = effectiveOptions.template\n      .split(',')\n      .map((p) => p.trim());\n    filteredTagTemplateMap = {} as TagTemplateMap;\n\n    for (const [tag, templates] of Object.entries(tagTemplateMap)) {\n      const filteredTemplates = templates.filter((template) => {\n        return templatePatterns.some((pattern) => {\n          // Support wildcard matching\n          if (pattern.includes('*')) {\n            const regex = new RegExp(pattern.replace(/\\*/g, '.*'));\n            return regex.test(template.template) || regex.test(tag);\n          }\n          return template.template.includes(pattern) || tag.includes(pattern);\n        });\n      });\n\n      if (filteredTemplates.length > 0) {\n        filteredTagTemplateMap[tag] = filteredTemplates;\n      }\n    }\n\n    if (shouldLog('verbose', logLevel)) {\n      console.log(\n        pc.gray(`Template filter applied: ${effectiveOptions.template}`),\n      );\n    }\n  }\n\n  // Merge plugin-provided templates (inline content) with config templates\n  const pluginTemplateMap = await getPluginTemplates();\n  const combinedTemplateMap: Record<string, TemplateSource[]> = {};\n\n  for (const [tag, templates] of Object.entries(filteredTagTemplateMap)) {\n    combinedTemplateMap[tag] = templates.map((t) => ({\n      template: t.template,\n      suffix: t.suffix,\n    }));\n  }\n\n  for (const [tag, templates] of Object.entries(pluginTemplateMap)) {\n    if (!combinedTemplateMap[tag]) {\n      combinedTemplateMap[tag] = [];\n    }\n    combinedTemplateMap[tag].push(...templates);\n  }\n\n  // Debug logging for template maps\n  if (shouldLog('verbose', logLevel)) {\n    console.log(pc.gray('\\n--- Template Map Debug ---'));\n    console.log(\n      pc.gray(\n        `Plugin templates: ${Object.keys(pluginTemplateMap).length} tags`,\n      ),\n    );\n    console.log(\n      pc.gray(`  Tags: ${Object.keys(pluginTemplateMap).join(', ')}`),\n    );\n    console.log(\n      pc.gray(\n        `Config templates: ${Object.keys(filteredTagTemplateMap).length} tags`,\n      ),\n    );\n    console.log(\n      pc.gray(`  Tags: ${Object.keys(filteredTagTemplateMap).join(', ')}`),\n    );\n    console.log(\n      pc.gray(\n        `Combined templates: ${Object.keys(combinedTemplateMap).length} tags`,\n      ),\n    );\n    console.log(\n      pc.gray(`  Tags: ${Object.keys(combinedTemplateMap).join(', ')}`),\n    );\n  }\n\n  // 5. Generate files\n  if (shouldLog('normal', logLevel)) {\n    console.log(\n      pc.cyan(`\\nGenerating instruction files in ${config.outputDirectory}...`),\n    );\n  }\n  const generateSpinner = ora('Generating instruction files...').start();\n  const generatedFiles: string[] = [];\n  let processedProjects = 0;\n  let totalTemplates = 0;\n  for (const project of projects) {\n    // Skip if specific project requested and this isn't it\n    if (effectiveOptions.project && project.name !== effectiveOptions.project) {\n      continue;\n    }\n\n    if (project.tags.size === 0) {\n      if (shouldLog('normal', logLevel)) {\n        console.log(pc.gray(`  Skipping: ${project.name} (No matching tags)`));\n      }\n      continue;\n    }\n\n    processedProjects++;\n    if (shouldLog('normal', logLevel)) {\n      console.log(pc.bold(`  Processing: ${project.name}`));\n    }\n    if (shouldLog('verbose', logLevel)) {\n      console.log(pc.gray(`    Tags: ${[...project.tags].join(', ')}`));\n    }\n\n    const globPattern = buildPreciseGlobPattern(\n      project.path,\n      project.tags,\n      effectiveOptions.exclude,\n    );\n\n    for (const tag of project.tags) {\n      const templates = combinedTemplateMap[tag];\n      if (!templates) continue;\n\n      for (const t of templates) {\n        totalTemplates++;\n        // Use plugin inline content or user custom templates\n        const templateContent =\n          t.inlineContent ?? readTemplate(userTemplateDir, t.template);\n        const source = t.inlineContent ? 'Plugin' : 'Custom';\n\n        if (!templateContent) {\n          console.warn(pc.yellow(`    ⚠️  Template not found: ${t.template}`));\n          continue;\n        }\n\n        const header = formatter.getFrontmatter(globPattern, project.name);\n        const formattedContent = formatter.format(\n          templateContent,\n          globPattern,\n          project.name,\n        );\n        const fullContent = `${header}\\n${formattedContent}`;\n\n        // Use just the suffix as the filename (e.g., \"typescript.instructions.md\")\n        // This follows GitHub Copilot's naming convention for path-specific instructions\n        const outputFilename = t.suffix;\n        const outputPath = path.join(targetDir, outputFilename);\n\n        generatedFiles.push(outputFilename);\n\n        if (effectiveOptions.dryRun) {\n          if (shouldLog('normal', logLevel)) {\n            console.log(\n              pc.cyan(\n                `    📝 Would generate: ${pc.bold(outputFilename)} (from ${source})`,\n              ),\n            );\n          }\n        } else {\n          fs.writeFileSync(outputPath, fullContent);\n          if (shouldLog('normal', logLevel)) {\n            console.log(\n              pc.green(\n                `    ✅ Generated: ${pc.bold(outputFilename)} (from ${source})`,\n              ),\n            );\n          }\n        }\n      }\n    }\n  }\n\n  generateSpinner.succeed(\n    `Generated ${generatedFiles.length} files from ${totalTemplates} templates across ${processedProjects} projects`,\n  );\n\n  // 6. Pruning: Ask to remove old files\n  if (!effectiveOptions.dryRun && !effectiveOptions.skipPruning) {\n    await pruneOldFiles(targetDir, generatedFiles, effectiveOptions.force);\n  } else if (effectiveOptions.dryRun && shouldLog('verbose', logLevel)) {\n    console.log(pc.gray('\\nWould check for old files to prune...'));\n  }\n\n  if (shouldLog('normal', logLevel)) {\n    console.log(`\\n${'═'.repeat(60)}`);\n    if (effectiveOptions.dryRun) {\n      console.log(pc.cyan('✨ Dry run complete! No files were modified.'));\n      console.log(\n        pc.gray(\n          `📋 Would have generated ${generatedFiles.length} instruction file(s)`,\n        ),\n      );\n      console.log(\n        pc.gray(\n          `📊 From ${totalTemplates} template(s) across ${processedProjects} project(s)`,\n        ),\n      );\n    } else {\n      console.log(pc.green('✨ AI instruction alignment complete!'));\n      console.log(\n        pc.bold(`📁 Generated ${generatedFiles.length} instruction file(s)`),\n      );\n      console.log(\n        pc.gray(\n          `📊 From ${totalTemplates} template(s) across ${processedProjects} project(s)`,\n        ),\n      );\n      console.log(\n        pc.gray(`📂 Files are located in: ${pc.bold(config.outputDirectory)}`),\n      );\n    }\n    console.log('═'.repeat(60));\n  }\n\n  if (config.target === 'github-copilot' && shouldLog('normal', logLevel)) {\n    console.log('\\n--- VS Code + GitHub Copilot Tip ---');\n    console.log(\n      \"To maximize Copilot's awareness, add this to your workspace .vscode/settings.json:\",\n    );\n    console.log(`\n  \"github.copilot.advanced\": {\n    \"instructions\": \".github/instructions\"\n  }\n    `);\n    console.log(\n      'This tells Copilot to *always* read these files. Restart VS Code after adding.',\n    );\n  }\n}\n\n// --- HELPER FUNCTIONS ---\n\nfunction ensureTargetDir(targetDir: string) {\n  const spinner = ora(`Checking target directory: ${targetDir}`).start();\n  if (!fs.existsSync(targetDir)) {\n    spinner.text = 'Target directory not found. Creating...';\n    try {\n      fs.mkdirSync(targetDir, { recursive: true });\n      spinner.succeed(`Created ${targetDir}`);\n    } catch (error) {\n      spinner.fail(\n        pc.red(\n          `Error creating directory: ${(error as Error).message}. Please check permissions.`,\n        ),\n      );\n      process.exit(1);\n    }\n  } else {\n    spinner.succeed('Target directory OK.');\n  }\n}\n\nasync function ensureRegistryInitialized() {\n  const registry = PluginRegistry.getInstance();\n  // initialize will short-circuit if already initialized\n  await registry.initialize();\n}\n\nasync function getPluginTemplates(): Promise<Record<string, TemplateSource[]>> {\n  await ensureRegistryInitialized();\n  const registry = PluginRegistry.getInstance();\n  let plugins: LanguagePlugin[] = [];\n\n  try {\n    // Direct method call instead of type casting\n    plugins = await registry.getAllPlugins();\n  } catch (e) {\n    console.warn(\n      pc.yellow(`⚠️  Failed to get plugins: ${(e as Error).message}`),\n    );\n    console.warn(\n      pc.yellow(\n        `⚠️  Registry type: ${typeof registry}, has getAllPlugins: ${typeof registry?.getAllPlugins}`,\n      ),\n    );\n  }\n\n  if (plugins.length === 0) {\n    console.warn(pc.yellow('⚠️  No plugins loaded from registry!'));\n  }\n\n  const map: Record<string, TemplateSource[]> = {};\n\n  for (const plugin of plugins) {\n    let templates: TemplateDefinition[] = [];\n    try {\n      const maybeTemplates = await plugin.getTemplates();\n      templates = Array.isArray(maybeTemplates) ? maybeTemplates : [];\n    } catch (e) {\n      console.warn(\n        pc.yellow(\n          `⚠️  Plugin ${plugin.name} getTemplates failed: ${(e as Error).message}`,\n        ),\n      );\n      continue;\n    }\n\n    for (const tmpl of templates) {\n      const suffix = `${tmpl.name}.md`;\n      let content: string | null = null;\n      try {\n        content =\n          typeof tmpl.content === 'function'\n            ? await tmpl.content()\n            : tmpl.content;\n      } catch (e) {\n        console.warn(\n          pc.yellow(\n            `⚠️  Plugin ${plugin.name} template ${tmpl.name} failed to load: ${(e as Error).message}`,\n          ),\n        );\n      }\n\n      for (const tag of tmpl.tags) {\n        if (!map[tag]) map[tag] = [];\n        map[tag].push({\n          template: `plugin:${plugin.name}/${tmpl.name}`,\n          suffix,\n          inlineContent: content ?? undefined,\n        });\n      }\n    }\n  }\n\n  return map;\n}\n\nasync function findProjects(): Promise<Project[]> {\n  await ensureRegistryInitialized();\n  const projects: Project[] = [];\n  const rootPath = process.cwd();\n\n  // Initialize plugin registry and detect projects\n  const registry = PluginRegistry.getInstance();\n  const detectedProjects = await registry.detectAllProjects(rootPath);\n\n  if (detectedProjects.length === 0) {\n    return [];\n  }\n\n  for (const result of detectedProjects) {\n    const relativePath = path.relative(rootPath, result.metadata.projectPath);\n    projects.push({\n      name: sanitizeProjectName(\n        result.metadata.name || path.basename(result.metadata.projectPath),\n      ),\n      path: relativePath || '.',\n      tags: new Set<string>(),\n    });\n  }\n\n  return projects;\n}\n\n/**\n * Sanitize project names for filesystem-safe output filenames.\n * - Convert scoped names like \"@scope/app\" to \"scope-app\"\n * - Replace path separators and whitespace with '-'\n * - Remove leading '@'\n */\nfunction sanitizeProjectName(name: string): string {\n  const trimmed = name.trim();\n  // Replace slashes with dashes, remove leading '@'\n  let sanitized = trimmed.replace(/^@/, '').replace(/[\\\\/\\s]+/g, '-');\n  // Collapse multiple dashes\n  sanitized = sanitized.replace(/-+/g, '-');\n  return sanitized;\n}\n\nasync function analyzeProject(\n  project: Project,\n  depMap: DependencyTagMap,\n  configMap: ConfigFileTagMap,\n  globMap: FileGlobTagMap,\n) {\n  await ensureRegistryInitialized();\n  const projectRoot = path.resolve(process.cwd(), project.path);\n\n  // Strategy 1: Analyze dependencies from any manifest file\n  try {\n    const registry = PluginRegistry.getInstance();\n    const detectedProjects = await registry.detectAllProjects(projectRoot);\n    if (detectedProjects.length > 0) {\n      const projectMetadata = detectedProjects[0].metadata; // Use first match\n\n      if (projectMetadata.tags?.length) {\n        for (const tag of projectMetadata.tags) {\n          project.tags.add(tag);\n        }\n      }\n\n      for (const dep in projectMetadata.dependencies) {\n        // Check both the full dependency name and the package/module name\n        if (depMap[dep]) {\n          project.tags.add(depMap[dep]);\n        }\n\n        // For scoped packages like @scope/pkg or group:artifact, try the base name too\n        const baseName = dep.split(/[@/:]/g).pop();\n        if (baseName && depMap[baseName]) {\n          project.tags.add(depMap[baseName]);\n        }\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Could not analyze dependencies for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n\n  // Strategy 2: Analyze key config files\n  try {\n    for (const file in configMap) {\n      const tag = configMap[file];\n      const configPath = path.join(projectRoot, file);\n      if (fs.existsSync(configPath)) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Error scanning config files for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n\n  // Strategy 3: Analyze file globs\n  try {\n    for (const pattern in globMap) {\n      const tag = globMap[pattern];\n      // Use 'glob' package for async globbing\n      const results = await glob(pattern, {\n        cwd: projectRoot,\n        nodir: true,\n        dot: true, // Include dotfiles if needed, though 'src' patterns usually don't\n      });\n      if (results.length > 0) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Error scanning file globs for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n}\n\nfunction readTemplate(dir: string, templateFile: string): string | null {\n  const p = path.join(dir, templateFile);\n  try {\n    return fs.readFileSync(p, 'utf-8');\n  } catch (_e) {\n    return null; // Will be handled in the main function\n  }\n}\n\nasync function pruneOldFiles(\n  targetDir: string,\n  generatedFiles: string[],\n  force = false,\n) {\n  const existingFiles = fs\n    .readdirSync(targetDir)\n    .filter((f) => f.endsWith('.md'));\n\n  const oldFiles = existingFiles.filter((f) => !generatedFiles.includes(f));\n\n  if (oldFiles.length > 0) {\n    console.warn(\n      pc.yellow(\n        `\\n⚠️  Found ${oldFiles.length} instruction files that are no longer generated:`,\n      ),\n    );\n    for (const f of oldFiles) {\n      console.warn(pc.yellow(`  - ${f}`));\n    }\n\n    let prune = force;\n\n    if (!force) {\n      const answer = await inquirer.prompt([\n        {\n          type: 'confirm',\n          name: 'prune',\n          message: `Do you want to delete these ${oldFiles.length} old files?`,\n          default: false,\n        },\n      ]);\n      prune = answer.prune;\n    }\n\n    if (prune) {\n      let deleteCount = 0;\n      for (const file of oldFiles) {\n        try {\n          fs.unlinkSync(path.join(targetDir, file));\n          deleteCount++;\n        } catch (e) {\n          console.error(\n            pc.red(`  ❌ Error deleting ${file}: ${(e as Error).message}`),\n          );\n        }\n      }\n      console.log(`✅ Pruned ${deleteCount} old files.`);\n    }\n  }\n}\n","import * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport {\n  loadUserConfig,\n  mergeConfigs,\n  validateInstructions,\n} from '@el-j/magic-helix-core';\nimport ora from 'ora';\nimport pc from 'picocolors';\n\n/**\n * The 'validate' command.\n * Checks instruction files for quality based on awesome-ai-system-prompts best practices.\n */\nexport async function validate() {\n  console.log(\n    pc.cyan('🔍 Validating instruction files with quality scoring...\\n'),\n  );\n\n  const spinner = ora('Loading configuration...').start();\n\n  // Load config\n  const userConfig = loadUserConfig();\n  const config = mergeConfigs(userConfig);\n  spinner.succeed('Configuration loaded.');\n\n  const targetDir = path.resolve(\n    process.cwd(),\n    config.outputDirectory as string,\n  );\n\n  // Check if directory exists\n  if (!fs.existsSync(targetDir)) {\n    spinner.fail(\n      pc.red(\n        `❌ Output directory ${config.outputDirectory} does not exist. Run 'magic-helix run' first.`,\n      ),\n    );\n    return;\n  }\n\n  // Find all .md files\n  const files = fs.readdirSync(targetDir).filter((f) => f.endsWith('.md'));\n\n  if (files.length === 0) {\n    console.log(\n      pc.yellow(\"No instruction files found. Run 'magic-helix run' first.\"),\n    );\n    return;\n  }\n\n  console.log(pc.gray(`Checking ${files.length} instruction file(s)...\\n`));\n\n  // Telemetry (optional): fall back to no-op if unavailable\n  let telemetry: { track: (event: unknown) => void } = { track: () => {} };\n  try {\n    const core = await import('@el-j/magic-helix-core');\n    // Check if createTelemetry is available in the imported core module\n    const coreExports = core as Record<string, unknown>;\n    if (typeof coreExports.createTelemetry === 'function') {\n      const createTelemetry = coreExports.createTelemetry as (\n        config: Record<string, unknown>,\n      ) => { track: (event: unknown) => void };\n      telemetry = createTelemetry({});\n    }\n  } catch {\n    // ignore if core import fails in test/browser\n  }\n\n  let passCount = 0;\n  let failCount = 0;\n  const results: Array<{ file: string; score: number; grade: string }> = [];\n\n  for (const file of files) {\n    const filePath = path.join(targetDir, file);\n\n    try {\n      const content = fs.readFileSync(filePath, 'utf-8');\n\n      // Run quality validation\n      const quality = validateInstructions(content);\n      const grade = getQualityGrade(quality.overallScore);\n\n      results.push({ file, score: quality.overallScore, grade });\n\n      if (quality.overallScore >= 70) {\n        passCount++;\n      } else {\n        failCount++;\n      }\n\n      // Display individual file results\n      const scoreColor =\n        quality.overallScore >= 90\n          ? pc.green\n          : quality.overallScore >= 70\n            ? pc.blue\n            : pc.yellow;\n\n      console.log(\n        scoreColor(`${grade} ${quality.overallScore}/100`) +\n          pc.gray(` - ${file}`),\n      );\n\n      if (quality.missingElements.length > 0) {\n        console.log(\n          pc.red(`     Missing: ${quality.missingElements.join(', ')}`),\n        );\n      }\n\n      if (quality.recommendations.length > 0 && quality.overallScore < 90) {\n        console.log(pc.gray(`     Tip: ${quality.recommendations[0]}`));\n      }\n\n      // Track per-file validation result\n      telemetry.track({\n        type: 'instruction_validation',\n        file,\n        score: quality.overallScore,\n        structureScore: quality.structureScore,\n        clarityScore: quality.clarityScore,\n        completenessScore: quality.completenessScore,\n        missingCount: quality.missingElements.length,\n      });\n    } catch (e) {\n      failCount++;\n      console.log(pc.red(`ERROR - ${file}: ${(e as Error).message}`));\n    }\n  }\n\n  // Display summary\n  console.log(pc.bold('\\n=== Validation Summary ===\\n'));\n  console.log(pc.green(`✅ Passed (≥70): ${passCount}`));\n  console.log(pc.red(`❌ Failed (<70): ${failCount}`));\n\n  const avgScore =\n    results.reduce((sum, r) => sum + r.score, 0) / results.length;\n  console.log(pc.cyan(`📊 Average Score: ${Math.round(avgScore)}/100`));\n\n  telemetry.track({\n    type: 'summary',\n    files: results.length,\n    pass: passCount,\n    fail: failCount,\n    averageScore: Math.round(avgScore),\n  });\n\n  if (failCount === 0 && avgScore >= 80) {\n    console.log(pc.green('\\n✨ All instruction files meet quality standards!'));\n  } else if (failCount > 0) {\n    console.log(\n      pc.yellow(\n        `\\n⚠️  ${failCount} file(s) need improvement. Run with --verbose for details.`,\n      ),\n    );\n  }\n}\n\nfunction getQualityGrade(score: number): string {\n  if (score >= 90) return 'A';\n  if (score >= 80) return 'B';\n  if (score >= 70) return 'C';\n  if (score >= 60) return 'D';\n  return 'F';\n}\n","#!/usr/bin/env node\n\nimport { readFileSync } from 'node:fs';\nimport { realpathSync } from 'node:fs';\nimport { dirname, join, resolve } from 'node:path';\nimport { fileURLToPath } from 'node:url';\nimport { Command } from 'commander';\nimport pc from 'picocolors';\nimport { clean } from './commands/clean';\nimport { init } from './commands/init';\nimport { list } from './commands/list';\nimport { pluginsCommand } from './commands/plugins';\nimport { refresh } from './commands/refresh';\nimport { run } from './commands/run';\nimport { validate } from './commands/validate';\n\n// This is the main entry point for the CLI tool.\n// It uses 'commander' to set up sub-commands: 'init' and 'run'.\n\n// Read version from 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Nothing to clean.`,\n      ),\n    );\n    return;\n  }\n\n  // Find all .md files\n  const files = fs.readdirSync(targetDir).filter((f) => f.endsWith('.md'));\n\n  if (files.length === 0) {\n    console.log(pc.gray('No instruction files found. Nothing to clean.'));\n    return;\n  }\n\n  // Show files and ask for confirmation\n  console.log(\n    pc.yellow(`Found ${files.length} instruction file(s) to delete:\\n`),\n  );\n  for (const file of files) {\n    console.log(pc.gray(`  - ${file}`));\n  }\n  console.log();\n\n  const { confirm } = await inquirer.prompt([\n    {\n      type: 'confirm',\n      name: 'confirm',\n      message: pc.red(\n        `Are you sure you want to delete all ${files.length} file(s)?`,\n      ),\n      default: false,\n    },\n  ]);\n\n  if (!confirm) {\n    console.log(pc.yellow('Clean cancelled.'));\n    return;\n  }\n\n  // Delete files\n  const deleteSpinner = ora('Deleting files...').start();\n  let deleteCount = 0;\n  let errorCount = 0;\n\n  for (const file of files) {\n    try {\n      fs.unlinkSync(path.join(targetDir, file));\n      deleteCount++;\n    } catch (e) {\n      console.error(\n        pc.red(`  ❌ Error deleting ${file}: ${(e as Error).message}`),\n      );\n      errorCount++;\n    }\n  }\n\n  if (errorCount === 0) {\n    deleteSpinner.succeed(\n      pc.green(`✅ Successfully deleted ${deleteCount} file(s).`),\n    );\n  } else {\n    deleteSpinner.warn(\n      pc.yellow(\n        `⚠️  Deleted ${deleteCount} file(s), ${errorCount} error(s) occurred.`,\n      ),\n    );\n  }\n}\n","import * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport type { Config } from '@el-j/magic-helix-core';\nimport gradient from 'gradient-string';\nimport inquirer from 'inquirer';\nimport ora from 'ora';\nimport pc from 'picocolors';\n\n// --- CONFIGURATION ---\nconst CONFIG_FILENAME = 'magic-helix.config.json';\nconst DEFAULT_TEMPLATE_DIR = 'ai_templates';\n\n// This is the *minimal* config file 'init' will create.\n// It's designed for users who want to *extend* the built-in rules.\nconst MINIMAL_USER_CONFIG: Config = {\n  target: 'github-copilot',\n  templateDirectory: DEFAULT_TEMPLATE_DIR,\n  outputDirectory: '.github/instructions',\n  dependencyTagMap: {\n    // \"my-internal-package\": \"domain-my-rules\"\n  },\n  configFileTagMap: {\n    // \"my-custom-config.json\": \"domain-my-rules\"\n  },\n  fileGlobTagMap: {\n    // \"src/specific-folder/**/*.ts\": \"domain-my-rules\"\n  },\n  tagTemplateMap: {\n    // \"domain-my-rules\": [\n    //   { \"template\": \"my-custom-rule.md\", \"suffix\": \"my-rule.md\" }\n    // ]\n  },\n};\n\n/**\n * The 'init' command.\n * Creates a minimal config file and template directory\n * for users who want to *extend* the built-in conventions.\n */\nexport async function init() {\n  const spinner = ora(\n    pc.bold('Initializing Magic Helix for custom rules...'),\n  ).start();\n\n  const configPath = path.resolve(process.cwd(), CONFIG_FILENAME);\n  const templatePath = path.resolve(process.cwd(), DEFAULT_TEMPLATE_DIR);\n\n  // Check if config file already exists\n  if (fs.existsSync(configPath)) {\n    spinner.stop();\n    const { overwrite } = await inquirer.prompt([\n      {\n        type: 'confirm',\n        name: 'overwrite',\n        message: `A ${CONFIG_FILENAME} file already exists. Do you want to overwrite it with a minimal example?`,\n        default: false,\n      },\n    ]);\n    if (!overwrite) {\n      spinner.warn(pc.yellow('Operation cancelled.'));\n      return;\n    }\n    spinner.start('Overwriting existing config...');\n  }\n\n  // 1. Write the minimal config file\n  try {\n    fs.writeFileSync(\n      configPath,\n      JSON.stringify(MINIMAL_USER_CONFIG, null, 2),\n      'utf-8',\n    );\n    spinner.succeed(\n      pc.green(`Created minimal config file: ${pc.bold(CONFIG_FILENAME)}`),\n    );\n  } catch (e) {\n    spinner.fail(pc.red(`Error writing config file: ${(e as Error).message}`));\n    return;\n  }\n\n  spinner.start('Creating templates directory...');\n\n  // 2. Create the templates directory\n  if (!fs.existsSync(templatePath)) {\n    fs.mkdirSync(templatePath, { recursive: true });\n  }\n\n  // 3. Copy *one* example file to show them how it works\n  const exampleTemplatePath = path.resolve(templatePath, 'my-custom-rule.md');\n  if (!fs.existsSync(exampleTemplatePath)) {\n    fs.writeFileSync(\n      exampleTemplatePath,\n      '# My Team\\'s Custom Rule\\n- This rule is specific to our \"domain-my-rules\" tag.\\n- ALWAYS follow this important pattern.\\n',\n      'utf-8',\n    );\n    spinner.succeed(\n      pc.green(\n        `Created templates directory and example file: ${pc.bold(DEFAULT_TEMPLATE_DIR)}`,\n      ),\n    );\n  } else {\n    spinner.succeed(\n      pc.green(\n        `Templates directory ${pc.bold(DEFAULT_TEMPLATE_DIR)} already exists.`,\n      ),\n    );\n  }\n\n  console.log(\n    gradient.pastel.multiline(\n      '\\n✨ Success! Your project is ready for custom rules. ✨',\n    ),\n  );\n  console.log(pc.cyan('\\nNext steps:'));\n  console.log(\n    `  1. Edit ${pc.bold(CONFIG_FILENAME)} to define your team's \"tags\".`,\n  );\n  console.log(\n    `  2. Add your custom .md instruction files to ${pc.bold(DEFAULT_TEMPLATE_DIR)}.`,\n  );\n  console.log(\n    `  3. Run ${pc.bold('npx @el-j/magic-agent-helix run')} to generate your files.`,\n  );\n}\n","import * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport type {\n  ConfigFileTagMap,\n  DependencyTagMap,\n  FileGlobTagMap,\n} from '@el-j/magic-helix-core';\nimport {\n  PluginRegistry,\n  loadUserConfig,\n  mergeConfigs,\n} from '@el-j/magic-helix-core';\nimport ora from 'ora';\nimport pc from 'picocolors';\n\n/**\n * The 'list' command.\n * Shows detected projects, tags, and templates without generating files.\n */\nexport async function list() {\n  console.log(pc.cyan('📋 Listing project information...\\n'));\n\n  const spinner = ora('Loading configuration...').start();\n\n  // 1. Load Configs\n  const userConfig = loadUserConfig();\n  const config = mergeConfigs(userConfig);\n  spinner.succeed('Configuration loaded.');\n\n  const { dependencyTagMap, configFileTagMap, fileGlobTagMap, tagTemplateMap } =\n    config;\n\n  // 2. Find all projects\n  const projectSpinner = ora('Scanning for projects...').start();\n  const projects = await findProjects();\n  if (projects.length === 0) {\n    projectSpinner.warn(pc.yellow('No projects found.'));\n    return;\n  }\n  projectSpinner.succeed(`Found ${projects.length} projects.`);\n\n  // 3. Analyze projects\n  const analyzeSpinner = ora('Analyzing projects...').start();\n  for (const project of projects) {\n    await analyzeProject(\n      project,\n      dependencyTagMap,\n      configFileTagMap,\n      fileGlobTagMap,\n    );\n  }\n  analyzeSpinner.succeed('Analysis complete.\\n');\n\n  // 4. Display results\n  console.log(pc.cyan(pc.bold('Projects & Tags:\\n')));\n\n  for (const project of projects) {\n    console.log(pc.bold(`📦 ${project.name}`));\n    console.log(pc.gray(`   Path: ${project.path}`));\n\n    if (project.tags.size === 0) {\n      console.log(pc.yellow('   No tags detected'));\n    } else {\n      console.log(pc.green(`   Tags: ${[...project.tags].join(', ')}`));\n\n      // Show which templates would be applied\n      const templates: string[] = [];\n      for (const tag of project.tags) {\n        const tagTemplates = tagTemplateMap[tag];\n        if (tagTemplates) {\n          for (const t of tagTemplates) {\n            templates.push(`${project.name}.${t.suffix}`);\n          }\n        }\n      }\n\n      if (templates.length > 0) {\n        console.log(pc.gray(`   Would generate: ${templates.join(', ')}`));\n      }\n    }\n    console.log(); // Empty line\n  }\n\n  // 5. Show configuration summary\n  console.log(pc.cyan(pc.bold('Configuration:\\n')));\n  console.log(pc.gray(`   Output directory: ${config.outputDirectory}`));\n  console.log(pc.gray(`   Template directory: ${config.templateDirectory}`));\n  console.log(pc.gray(`   Target: ${config.target}`));\n}\n\n// --- HELPER FUNCTIONS ---\n\ninterface Project {\n  name: string;\n  path: string;\n  tags: Set<string>;\n}\n\nasync function findProjects(): Promise<Project[]> {\n  const projects: Project[] = [];\n  const rootPath = process.cwd();\n\n  // Use the new polyglot detection\n  const registry = PluginRegistry.getInstance();\n  await registry.initialize();\n  const detectedResults = await registry.detectAllProjects(rootPath);\n  const detectedProjects = detectedResults.map((r) => r.metadata);\n\n  if (detectedProjects.length === 0) {\n    return [];\n  }\n\n  for (const proj of detectedProjects) {\n    const relativePath = path.relative(rootPath, proj.projectPath);\n    projects.push({\n      name: proj.name || path.basename(proj.projectPath),\n      path: relativePath || '.',\n      tags: new Set<string>(),\n    });\n  }\n\n  return projects;\n}\n\nasync function analyzeProject(\n  project: Project,\n  depMap: DependencyTagMap,\n  configMap: ConfigFileTagMap,\n  globMap: FileGlobTagMap,\n) {\n  const projectRoot = path.resolve(process.cwd(), project.path);\n\n  // Analyze dependencies from any manifest file\n  try {\n    const registry = PluginRegistry.getInstance();\n    const detectedResults = await registry.detectAllProjects(projectRoot);\n    const detectedProjects = detectedResults.map((r) => r.metadata);\n    if (detectedProjects.length > 0) {\n      const projectMetadata = detectedProjects[0]; // Use first match\n\n      if (projectMetadata.tags?.length) {\n        for (const tag of projectMetadata.tags) {\n          project.tags.add(tag);\n        }\n      }\n\n      for (const dep in projectMetadata.dependencies) {\n        // Check both the full dependency name and the package/module name\n        if (depMap[dep]) {\n          project.tags.add(depMap[dep]);\n        }\n\n        // For scoped packages like @scope/pkg or group:artifact, try the base name too\n        const baseName = dep.split(/[@/:]/g).pop();\n        if (baseName && depMap[baseName]) {\n          project.tags.add(depMap[baseName]);\n        }\n      }\n    }\n  } catch (_e) {\n    // Skip errors\n  }\n\n  // Analyze config files\n  try {\n    for (const file in configMap) {\n      const tag = configMap[file];\n      const configPath = path.join(projectRoot, file);\n      if (fs.existsSync(configPath)) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (_e) {\n    // Skip errors\n  }\n\n  // Analyze file globs\n  try {\n    const { glob } = await import('glob');\n    for (const pattern in globMap) {\n      const tag = globMap[pattern];\n      const results = await glob(pattern, {\n        cwd: projectRoot,\n        nodir: true,\n        dot: true,\n      });\n      if (results.length > 0) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (_e) {\n    // Skip errors\n  }\n}\n","import { PluginRegistry } from '@el-j/magic-helix-core';\nimport pc from 'picocolors';\n\ninterface PluginsOptions {\n  verbose?: boolean;\n}\n\nexport async function pluginsCommand(\n  options: PluginsOptions = {},\n): Promise<void> {\n  console.log(pc.blue('🔌 MagicAgentHelix Plugin System'));\n  console.log();\n\n  try {\n    const registry = PluginRegistry.getInstance();\n    await registry.initialize({ verbose: options.verbose });\n\n    const plugins = await registry.getAllPlugins();\n    const stats = registry.getStatistics();\n\n    if (plugins.length === 0) {\n      console.log(pc.yellow('⚠️  No plugins loaded'));\n      return;\n    }\n\n    console.log(pc.green(`✅ ${plugins.length} plugin(s) loaded successfully`));\n    console.log();\n\n    // Display plugins grouped by priority\n    const sortedPlugins = plugins.sort((a, b) => b.priority - a.priority);\n\n    console.log(pc.bold('Available Language Plugins:'));\n    console.log('──────────────────────────────');\n\n    for (const plugin of sortedPlugins) {\n      const priorityColor =\n        plugin.priority >= 90\n          ? 'green'\n          : plugin.priority >= 70\n            ? 'yellow'\n            : 'cyan';\n\n      console.log(\n        `${pc.bold(plugin.displayName)} (${pc[priorityColor](`priority: ${plugin.priority}`)}) v${plugin.version}`,\n      );\n\n      if (options.verbose) {\n        const templates = plugin.getTemplates();\n        if (templates.length > 0) {\n          console.log(\n            `  📝 Templates: ${templates.map((t) => t.name).join(', ')}`,\n          );\n        }\n\n        const tagMap = plugin.getDependencyTagMap?.();\n        if (tagMap && Object.keys(tagMap).length > 0) {\n          console.log(\n            `  🏷️  Detects: ${Object.keys(tagMap).slice(0, 3).join(', ')}${Object.keys(tagMap).length > 3 ? '...' : ''}`,\n          );\n        }\n        console.log();\n      }\n    }\n\n    if (!options.verbose) {\n      console.log();\n      console.log(pc.dim('💡 Use --verbose for detailed plugin information'));\n    }\n\n    console.log();\n    console.log(pc.bold('System Statistics:'));\n    console.log('──────────────────');\n    console.log(`📊 Total plugins: ${stats.totalLoaded}`);\n    console.log(`⚡ Average load time: ${stats.averageLoadTime.toFixed(1)}ms`);\n    console.log(`❌ Load errors: ${stats.totalErrors}`);\n\n    if (stats.totalErrors > 0 && options.verbose) {\n      const errors = registry.getLoadErrors();\n      console.log();\n      console.log(pc.red('Load Errors:'));\n      console.log('────────────');\n      for (const error of errors) {\n        console.log(`❌ ${error.source.identifier}: ${error.error.message}`);\n      }\n    }\n  } catch (error) {\n    console.error(\n      pc.red('❌ Failed to load plugin registry:'),\n      (error as Error).message,\n    );\n    process.exit(1);\n  }\n}\n","/**\n * Utilities for mapping tags to appropriate file extensions\n */\n\nexport interface FileExtensionMapping {\n  extensions: string[];\n  description: string;\n}\n\n/**\n * Maps tags to their associated file extensions\n */\nexport const TAG_FILE_EXTENSIONS: Record<string, FileExtensionMapping> = {\n  // Frameworks\n  'framework-vue': {\n    extensions: ['vue'],\n    description: 'Vue components',\n  },\n  'framework-react': {\n    extensions: ['tsx', 'jsx', 'ts', 'js'],\n    description: 'React components',\n  },\n  'framework-angular': {\n    extensions: ['ts'],\n    description: 'Angular components',\n  },\n  'framework-nestjs': {\n    extensions: ['ts'],\n    description: 'NestJS controllers and services',\n  },\n\n  // Languages\n  'lang-typescript': {\n    extensions: ['ts', 'tsx'],\n    description: 'TypeScript files',\n  },\n  'lang-javascript': {\n    extensions: ['js', 'jsx'],\n    description: 'JavaScript files',\n  },\n  'lang-go': {\n    extensions: ['go'],\n    description: 'Go files',\n  },\n  'lang-python': {\n    extensions: ['py'],\n    description: 'Python files',\n  },\n  'lang-rust': {\n    extensions: ['rs'],\n    description: 'Rust files',\n  },\n  'rust-embedded': {\n    extensions: ['rs'],\n    description: 'Embedded Rust files',\n  },\n  hardware2rust: {\n    extensions: ['rs'],\n    description: 'Hardware2Rust project files',\n  },\n  'lang-java': {\n    extensions: ['java'],\n    description: 'Java files',\n  },\n  'lang-swift': {\n    extensions: ['swift'],\n    description: 'Swift files',\n  },\n  'lang-ruby': {\n    extensions: ['rb'],\n    description: 'Ruby files',\n  },\n  'lang-php': {\n    extensions: ['php'],\n    description: 'PHP files',\n  },\n  'lang-csharp': {\n    extensions: ['cs'],\n    description: 'C# files',\n  },\n  'lang-cpp': {\n    extensions: ['cpp', 'hpp', 'cc', 'h', 'cxx', 'hxx'],\n    description: 'C++ files',\n  },\n  'lang-c': {\n    extensions: ['c', 'h'],\n    description: 'C files',\n  },\n  'lang-kotlin': {\n    extensions: ['kt', 'kts'],\n    description: 'Kotlin files',\n  },\n  'lang-scala': {\n    extensions: ['scala', 'sc'],\n    description: 'Scala files',\n  },\n\n  // Styling\n  'style-tailwind': {\n    extensions: ['ts', 'tsx', 'js', 'jsx', 'vue'],\n    description: 'Files using Tailwind CSS',\n  },\n  'style-primevue': {\n    extensions: ['vue'],\n    description: 'Vue files with PrimeVue',\n  },\n  'style-mui': {\n    extensions: ['tsx', 'jsx'],\n    description: 'React files with Material UI',\n  },\n\n  // Testing\n  'test-vitest': {\n    extensions: ['test.ts', 'test.tsx', 'spec.ts', 'spec.tsx'],\n    description: 'Vitest test files',\n  },\n  'test-jest': {\n    extensions: [\n      'test.ts',\n      'test.tsx',\n      'test.js',\n      'test.jsx',\n      'spec.ts',\n      'spec.tsx',\n      'spec.js',\n      'spec.jsx',\n    ],\n    description: 'Jest test files',\n  },\n  'test-cypress': {\n    extensions: ['cy.ts', 'cy.js'],\n    description: 'Cypress test files',\n  },\n  'test-playwright': {\n    extensions: ['spec.ts', 'spec.js'],\n    description: 'Playwright test files',\n  },\n\n  // State management\n  'state-rxjs': {\n    extensions: ['ts', 'tsx'],\n    description: 'Files using RxJS',\n  },\n  'state-pinia': {\n    extensions: ['ts', 'vue'],\n    description: 'Vue files with Pinia',\n  },\n  'state-redux': {\n    extensions: ['ts', 'tsx', 'js', 'jsx'],\n    description: 'Files using Redux',\n  },\n  'state-zustand': {\n    extensions: ['ts', 'tsx', 'js', 'jsx'],\n    description: 'Files using Zustand',\n  },\n};\n\n/**\n * Get file extensions for a given tag\n */\nexport function getFileExtensionsForTag(tag: string): string[] {\n  return TAG_FILE_EXTENSIONS[tag]?.extensions || [];\n}\n\n/**\n * Build a precise glob pattern based on project path and tags\n */\nexport function buildPreciseGlobPattern(\n  projectPath: string,\n  tags: Set<string>,\n  excludePattern?: string,\n): string {\n  const allExtensions = new Set<string>();\n\n  // Collect all extensions from all tags\n  for (const tag of tags) {\n    const exts = getFileExtensionsForTag(tag);\n    for (const ext of exts) {\n      allExtensions.add(ext);\n    }\n  }\n\n  // Fallback to common extensions if no tags matched\n  if (allExtensions.size === 0) {\n    return `${projectPath}/src/**/*.{ts,js,vue,tsx,jsx}`;\n  }\n\n  // Build pattern\n  const extList = Array.from(allExtensions).join(',');\n  let pattern = `${projectPath}/src/**/*.{${extList}}`;\n\n  // Add exclude pattern if provided\n  if (excludePattern) {\n    // Convert exclude pattern to glob negation\n    const excludePatterns = excludePattern.split(',').map((p) => p.trim());\n    for (const exclude of excludePatterns) {\n      // Handle directory exclusions\n      if (exclude.endsWith('/**')) {\n        pattern += ` !(${projectPath}/src/${exclude})`;\n      } else if (exclude.includes('*')) {\n        pattern += ` !(${projectPath}/src/${exclude})`;\n      } else {\n        // Exact file match\n        pattern += ` !(${projectPath}/src/${exclude})`;\n      }\n    }\n  }\n\n  return pattern;\n}\n\n/**\n * Get a human-readable description of what file types apply\n */\nexport function getApplyToDescription(tags: Set<string>): string {\n  const descriptions: string[] = [];\n\n  for (const tag of tags) {\n    const mapping = TAG_FILE_EXTENSIONS[tag];\n    if (mapping) {\n      descriptions.push(mapping.description);\n    }\n  }\n\n  return descriptions.length > 0 ? descriptions.join(', ') : 'Source files';\n}\n","/**\n * Shared CLI options and types\n */\n\nexport interface CliOptions {\n  dryRun?: boolean;\n  force?: boolean;\n  skipPruning?: boolean;\n  outputDir?: string;\n  config?: string;\n  target?: 'github-copilot' | 'claude' | 'copilot-chat' | 'generic';\n  verbose?: boolean;\n  quiet?: boolean;\n  project?: string;\n  wizard?: boolean;\n  template?: string;\n  exclude?: string;\n}\n\n/**\n * Log level based on options\n */\nexport function getLogLevel(\n  options: CliOptions,\n): 'verbose' | 'normal' | 'quiet' {\n  if (options.quiet) return 'quiet';\n  if (options.verbose) return 'verbose';\n  return 'normal';\n}\n\n/**\n * Should we log this message at this level?\n */\nexport function shouldLog(\n  messageLevel: 'verbose' | 'normal' | 'error',\n  logLevel: 'verbose' | 'normal' | 'quiet',\n): boolean {\n  if (logLevel === 'quiet' && messageLevel !== 'error') return false;\n  if (logLevel === 'normal' && messageLevel === 'verbose') return false;\n  return true;\n}\n","import * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport type {\n  ConfigFileTagMap,\n  DependencyTagMap,\n  FileGlobTagMap,\n  TagTemplateMap,\n} from '@el-j/magic-helix-core';\nimport {\n  type AssistantTarget,\n  getFormatter,\n  loadUserConfig,\n  mergeConfigs,\n} from '@el-j/magic-helix-core';\nimport { PluginRegistry } from '@el-j/magic-helix-core';\nimport ora from 'ora';\nimport pc from 'picocolors';\nimport { buildPreciseGlobPattern } from '../utils/file-extensions';\n\n// --- TYPES ---\ninterface Project {\n  name: string;\n  path: string;\n  tags: Set<string>;\n}\n\nimport type { CliOptions } from '../utils/cli-options';\nimport { getLogLevel } from '../utils/cli-options';\n\n/**\n * The 'refresh' command.\n * Rescans the project and updates existing instruction files with new information.\n */\nexport async function refresh(options: CliOptions = {}) {\n  const _logLevel = getLogLevel(options);\n\n  const mainSpinner = ora('Loading configurations...').start();\n\n  // 1. Load Configs\n  const userConfig = loadUserConfig(options.config);\n  const config = mergeConfigs(userConfig);\n\n  // Override target if specified\n  if (options.target) {\n    config.target = options.target;\n  }\n\n  mainSpinner.succeed('Configuration loaded.');\n\n  const { dependencyTagMap, configFileTagMap, fileGlobTagMap, tagTemplateMap } =\n    config;\n\n  const userTemplateDir = path.resolve(\n    process.cwd(),\n    config.templateDirectory as string,\n  );\n  const targetDir = path.resolve(\n    process.cwd(),\n    config.outputDirectory as string,\n  );\n\n  // Get the formatter for the target assistant\n  const formatter = getFormatter(config.target as AssistantTarget);\n\n  // 2. Check if target directory exists\n  if (!fs.existsSync(targetDir)) {\n    console.log(\n      pc.yellow(\n        `⚠️  Output directory ${config.outputDirectory} does not exist.`,\n      ),\n    );\n    console.log(\n      pc.gray(`   Run 'magic-helix run' first to generate instruction files.`),\n    );\n    return;\n  }\n\n  // 3. Find all projects\n  const projectSpinner = ora('Scanning for projects...').start();\n  const projects = await findProjects();\n  if (projects.length === 0) {\n    projectSpinner.warn(\n      pc.yellow(\n        'No projects found. Make sure your root package.json has a \"workspaces\" field.',\n      ),\n    );\n    return;\n  }\n  projectSpinner.succeed(`Found ${projects.length} projects.`);\n\n  // 4. Analyze dependencies and tag projects\n  const analyzeSpinner = ora('Analyzing project tags...').start();\n  let totalTags = 0;\n  for (const project of projects) {\n    await analyzeProject(\n      project,\n      dependencyTagMap as DependencyTagMap,\n      configFileTagMap as ConfigFileTagMap,\n      fileGlobTagMap as FileGlobTagMap,\n    );\n    totalTags += project.tags.size;\n  }\n  analyzeSpinner.succeed(`Project analysis complete. Found ${totalTags} tags.`);\n\n  // 5. Update existing instruction files\n  console.log(\n    pc.cyan(`\\nRefreshing instruction files in ${config.outputDirectory}...`),\n  );\n\n  let updatedCount = 0;\n  let skippedCount = 0;\n\n  for (const project of projects) {\n    if (project.tags.size === 0) {\n      console.log(pc.gray(`  Skipping: ${project.name} (No matching tags)`));\n      skippedCount++;\n      continue;\n    }\n\n    console.log(pc.bold(`  Processing: ${project.name}`));\n    console.log(pc.gray(`    Tags: ${[...project.tags].join(', ')}`));\n\n    const globPattern = buildPreciseGlobPattern(project.path, project.tags);\n\n    for (const tag of project.tags) {\n      const templates = (tagTemplateMap as TagTemplateMap)[tag];\n      if (!templates) continue;\n\n      for (const t of templates) {\n        const outputFilename = `${project.name}.${t.suffix}`;\n        const outputPath = path.join(targetDir, outputFilename);\n\n        // Check if file exists\n        if (!fs.existsSync(outputPath)) {\n          console.log(\n            pc.yellow(`    ⚠️  File not found, skipping: ${outputFilename}`),\n          );\n          continue;\n        }\n\n        // Read template from user custom directory\n        const templateContent = readTemplate(userTemplateDir, t.template);\n        const source = 'Custom';\n\n        if (!templateContent) {\n          console.warn(pc.yellow(`    ⚠️  Template not found: ${t.template}`));\n          continue;\n        }\n\n        // Update header with new information\n        const header = formatter.getFrontmatter(globPattern, project.name);\n        const formattedContent = formatter.format(\n          templateContent,\n          globPattern,\n          project.name,\n        );\n        const fullContent = `${header}\\n${formattedContent}`;\n\n        // Write updated file\n        fs.writeFileSync(outputPath, fullContent);\n        updatedCount++;\n        console.log(\n          pc.green(\n            `    ✅ Refreshed: ${pc.bold(outputFilename)} (from ${source})`,\n          ),\n        );\n      }\n    }\n  }\n\n  console.log('\\n✨ Refresh complete!');\n  console.log(pc.green(`   Updated: ${updatedCount} files`));\n  console.log(pc.gray(`   Skipped: ${skippedCount} projects`));\n}\n\n// --- HELPER FUNCTIONS ---\n\nasync function findProjects(): Promise<Project[]> {\n  const projects: Project[] = [];\n  const rootPath = process.cwd();\n\n  // Use the new polyglot detection\n  const registry = PluginRegistry.getInstance();\n  await registry.initialize();\n  const detectedResults = await registry.detectAllProjects(rootPath);\n  const detectedProjects = detectedResults.map((r) => r.metadata);\n\n  if (detectedProjects.length === 0) {\n    return [];\n  }\n\n  for (const proj of detectedProjects) {\n    const relativePath = path.relative(rootPath, proj.projectPath);\n    projects.push({\n      name: proj.name || path.basename(proj.projectPath),\n      path: relativePath || '.',\n      tags: new Set<string>(),\n    });\n  }\n\n  return projects;\n}\n\nasync function analyzeProject(\n  project: Project,\n  depMap: DependencyTagMap,\n  configMap: ConfigFileTagMap,\n  globMap: FileGlobTagMap,\n) {\n  const projectRoot = path.resolve(process.cwd(), project.path);\n\n  // Strategy 1: Analyze dependencies from any manifest file\n  try {\n    const registry = PluginRegistry.getInstance();\n    const detectedResults = await registry.detectAllProjects(projectRoot);\n    const detectedProjects = detectedResults.map((r) => r.metadata);\n    if (detectedProjects.length > 0) {\n      const projectMetadata = detectedProjects[0]; // Use first match\n\n      if (projectMetadata.tags?.length) {\n        for (const tag of projectMetadata.tags) {\n          project.tags.add(tag);\n        }\n      }\n\n      for (const dep in projectMetadata.dependencies) {\n        // Check both the full dependency name and the package/module name\n        if (depMap[dep]) {\n          project.tags.add(depMap[dep]);\n        }\n\n        // For scoped packages like @scope/pkg or group:artifact, try the base name too\n        const baseName = dep.split(/[@/:]/g).pop();\n        if (baseName && depMap[baseName]) {\n          project.tags.add(depMap[baseName]);\n        }\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Could not analyze dependencies for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n\n  // Strategy 2: Analyze key config files\n  try {\n    for (const file in configMap) {\n      const tag = configMap[file];\n      const configPath = path.join(projectRoot, file);\n      if (fs.existsSync(configPath)) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Error scanning config files for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n\n  // Strategy 3: Analyze file globs\n  try {\n    const { glob } = await import('glob');\n    for (const pattern in globMap) {\n      const tag = globMap[pattern];\n      const results = await glob(pattern, {\n        cwd: projectRoot,\n        nodir: true,\n        dot: true,\n      });\n      if (results.length > 0) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Error scanning file globs for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n}\n\nfunction readTemplate(dir: string, templateFile: string): string | null {\n  const p = path.join(dir, templateFile);\n  try {\n    return fs.readFileSync(p, 'utf-8');\n  } catch (_e) {\n    return null;\n  }\n}\n","import * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport type {\n  ConfigFileTagMap,\n  DependencyTagMap,\n  FileGlobTagMap,\n  LanguagePlugin,\n  TagTemplateMap,\n} from '@el-j/magic-helix-core';\nimport {\n  type AssistantTarget,\n  PluginRegistry,\n  type TemplateDefinition,\n  getFormatter,\n  loadUserConfig,\n  mergeConfigs,\n} from '@el-j/magic-helix-core';\nimport { glob } from 'glob';\nimport gradient from 'gradient-string';\nimport inquirer from 'inquirer';\nimport ora from 'ora';\nimport pc from 'picocolors';\nimport type { CliOptions } from '../utils/cli-options';\nimport { getLogLevel, shouldLog } from '../utils/cli-options';\nimport { buildPreciseGlobPattern } from '../utils/file-extensions';\n\n// --- TYPES ---\ninterface Project {\n  name: string; // Sanitized package name, e.g., 'scope-my-app'\n  path: string; // Relative path from root, e.g., 'packages/my-app'\n  tags: Set<string>;\n}\n\ntype TemplateSource = {\n  template: string;\n  suffix: string;\n  inlineContent?: string;\n};\n\n/**\n * Interactive wizard to guide users through configuration options\n */\nasync function runWizard(): Promise<Partial<CliOptions>> {\n  console.log(\n    gradient.pastel.multiline('🤖 MagicAgentHelix Interactive Setup Wizard'),\n  );\n  console.log(\"Let's configure your AI instruction generation...\\n\");\n\n  const answers = await inquirer.prompt([\n    {\n      type: 'list',\n      name: 'target',\n      message: 'Which AI assistant are you using?',\n      choices: [\n        { name: 'GitHub Copilot', value: 'github-copilot' },\n        { name: 'Claude/Cursor', value: 'claude' },\n        { name: 'GitHub Copilot Chat', value: 'copilot-chat' },\n        { name: 'Generic Assistant', value: 'generic' },\n      ],\n      default: 'github-copilot',\n    },\n    {\n      type: 'confirm',\n      name: 'dryRun',\n      message:\n        'Would you like to preview what would be generated first (dry run)?',\n      default: true,\n    },\n    {\n      type: 'input',\n      name: 'outputDir',\n      message: 'Where should the instruction files be generated?',\n      default: '.ai',\n      when: (answers) => !answers.dryRun,\n    },\n    {\n      type: 'confirm',\n      name: 'force',\n      message: 'Overwrite existing files without prompting?',\n      default: false,\n      when: (answers) => !answers.dryRun,\n    },\n    {\n      type: 'list',\n      name: 'verbosity',\n      message: 'How much output would you like to see?',\n      choices: [\n        { name: 'Verbose (detailed information)', value: 'verbose' },\n        { name: 'Normal (standard output)', value: 'normal' },\n        { name: 'Quiet (minimal output)', value: 'quiet' },\n      ],\n      default: 'normal',\n    },\n  ]);\n\n  // Convert verbosity to CLI options\n  const options: Partial<CliOptions> = {\n    target: answers.target,\n    dryRun: answers.dryRun,\n  };\n\n  if (answers.outputDir) {\n    options.outputDir = answers.outputDir;\n  }\n\n  if (answers.force) {\n    options.force = answers.force;\n  }\n\n  if (answers.verbosity === 'verbose') {\n    options.verbose = true;\n  } else if (answers.verbosity === 'quiet') {\n    options.quiet = true;\n  }\n\n  console.log(pc.green('\\n✅ Configuration complete! Starting analysis...\\n'));\n\n  return options;\n}\n\n/**\n * The 'run' command.\n * Scans the monorepo and generates instruction files.\n */\nexport async function run(options: CliOptions = {}) {\n  // Run interactive wizard if requested\n  let effectiveOptions = options;\n  if (options.wizard) {\n    const wizardOptions = await runWizard();\n    // Merge wizard options with command line options (CLI options take precedence)\n    effectiveOptions = { ...wizardOptions, ...options };\n  }\n\n  const logLevel = getLogLevel(effectiveOptions);\n\n  if (shouldLog('normal', logLevel)) {\n    console.log(\n      gradient.pastel.multiline('🤖 Running AI Convention Aligner...'),\n    );\n  }\n\n  if (effectiveOptions.dryRun && shouldLog('normal', logLevel)) {\n    console.log(pc.yellow('🔍 DRY RUN MODE - No files will be written\\n'));\n  }\n\n  const mainSpinner = ora('Loading configurations...').start();\n\n  // 1. Load Configs (Built-in + Optional User)\n  const userConfig = loadUserConfig(effectiveOptions.config);\n  const config = mergeConfigs(userConfig);\n\n  // Override output directory if specified\n  if (effectiveOptions.outputDir) {\n    config.outputDirectory = effectiveOptions.outputDir;\n  }\n\n  // Override target if specified\n  if (effectiveOptions.target) {\n    config.target = effectiveOptions.target;\n  }\n\n  mainSpinner.succeed('Configuration loaded.');\n\n  const { dependencyTagMap, configFileTagMap, fileGlobTagMap, tagTemplateMap } =\n    config;\n\n  const userTemplateDir = path.resolve(\n    process.cwd(),\n    config.templateDirectory as string,\n  );\n  const targetDir = path.resolve(\n    process.cwd(),\n    config.outputDirectory as string,\n  );\n\n  // Get the formatter for the target assistant\n  const formatter = getFormatter(config.target as AssistantTarget);\n\n  // 2. Find all projects\n  const projectSpinner = ora('Scanning for projects...').start();\n  const projects = await findProjects();\n  if (projects.length === 0) {\n    projectSpinner.warn(\n      pc.yellow(\n        'No projects detected. The tool could not find any supported project types in the current directory.',\n      ),\n    );\n    console.log(\n      pc.gray(\n        '\\nSupported project types: Node.js, Python, Go, Rust, Java, Ruby, PHP, C#, Swift, C/C++, PlatformIO',\n      ),\n    );\n    console.log(\n      pc.gray(\n        'For monorepos, ensure your root package.json has a \"workspaces\" field.',\n      ),\n    );\n    console.log(\n      pc.gray(\n        'For standalone projects, ensure you have the appropriate manifest file (package.json, go.mod, Cargo.toml, platformio.ini, etc.)',\n      ),\n    );\n    return;\n  }\n  projectSpinner.succeed(`Found ${projects.length} projects.`);\n\n  // 3. Analyze dependencies and tag projects\n  const analyzeSpinner = ora('Analyzing project tags...').start();\n  let totalTags = 0;\n  for (const project of projects) {\n    // Skip if specific project requested and this isn't it\n    if (effectiveOptions.project && project.name !== effectiveOptions.project) {\n      if (shouldLog('verbose', logLevel)) {\n        console.log(pc.gray(`Skipping ${project.name} (not target project)`));\n      }\n      continue;\n    }\n\n    await analyzeProject(\n      project,\n      dependencyTagMap as DependencyTagMap,\n      configFileTagMap as ConfigFileTagMap,\n      fileGlobTagMap as FileGlobTagMap,\n    );\n    totalTags += project.tags.size;\n  }\n  analyzeSpinner.succeed(`Project analysis complete. Found ${totalTags} tags.`);\n\n  // 4. Ensure target directory exists\n  if (!effectiveOptions.dryRun) {\n    ensureTargetDir(targetDir);\n  } else if (shouldLog('verbose', logLevel)) {\n    console.log(pc.gray(`Would ensure directory: ${targetDir}`));\n  }\n\n  // Apply template filtering if specified\n  let filteredTagTemplateMap = tagTemplateMap as TagTemplateMap;\n  if (effectiveOptions.template) {\n    const templatePatterns = effectiveOptions.template\n      .split(',')\n      .map((p) => p.trim());\n    filteredTagTemplateMap = {} as TagTemplateMap;\n\n    for (const [tag, templates] of Object.entries(tagTemplateMap)) {\n      const filteredTemplates = templates.filter((template) => {\n        return templatePatterns.some((pattern) => {\n          // Support wildcard matching\n          if (pattern.includes('*')) {\n            const regex = new RegExp(pattern.replace(/\\*/g, '.*'));\n            return regex.test(template.template) || regex.test(tag);\n          }\n          return template.template.includes(pattern) || tag.includes(pattern);\n        });\n      });\n\n      if (filteredTemplates.length > 0) {\n        filteredTagTemplateMap[tag] = filteredTemplates;\n      }\n    }\n\n    if (shouldLog('verbose', logLevel)) {\n      console.log(\n        pc.gray(`Template filter applied: ${effectiveOptions.template}`),\n      );\n    }\n  }\n\n  // Merge plugin-provided templates (inline content) with config templates\n  const pluginTemplateMap = await getPluginTemplates();\n  const combinedTemplateMap: Record<string, TemplateSource[]> = {};\n\n  for (const [tag, templates] of Object.entries(filteredTagTemplateMap)) {\n    combinedTemplateMap[tag] = templates.map((t) => ({\n      template: t.template,\n      suffix: t.suffix,\n    }));\n  }\n\n  for (const [tag, templates] of Object.entries(pluginTemplateMap)) {\n    if (!combinedTemplateMap[tag]) {\n      combinedTemplateMap[tag] = [];\n    }\n    combinedTemplateMap[tag].push(...templates);\n  }\n\n  // Debug logging for template maps\n  if (shouldLog('verbose', logLevel)) {\n    console.log(pc.gray('\\n--- Template Map Debug ---'));\n    console.log(\n      pc.gray(\n        `Plugin templates: ${Object.keys(pluginTemplateMap).length} tags`,\n      ),\n    );\n    console.log(\n      pc.gray(`  Tags: ${Object.keys(pluginTemplateMap).join(', ')}`),\n    );\n    console.log(\n      pc.gray(\n        `Config templates: ${Object.keys(filteredTagTemplateMap).length} tags`,\n      ),\n    );\n    console.log(\n      pc.gray(`  Tags: ${Object.keys(filteredTagTemplateMap).join(', ')}`),\n    );\n    console.log(\n      pc.gray(\n        `Combined templates: ${Object.keys(combinedTemplateMap).length} tags`,\n      ),\n    );\n    console.log(\n      pc.gray(`  Tags: ${Object.keys(combinedTemplateMap).join(', ')}`),\n    );\n  }\n\n  // 5. Generate files\n  if (shouldLog('normal', logLevel)) {\n    console.log(\n      pc.cyan(`\\nGenerating instruction files in ${config.outputDirectory}...`),\n    );\n  }\n  const generateSpinner = ora('Generating instruction files...').start();\n  const generatedFiles: string[] = [];\n  let processedProjects = 0;\n  let totalTemplates = 0;\n  for (const project of projects) {\n    // Skip if specific project requested and this isn't it\n    if (effectiveOptions.project && project.name !== effectiveOptions.project) {\n      continue;\n    }\n\n    if (project.tags.size === 0) {\n      if (shouldLog('normal', logLevel)) {\n        console.log(pc.gray(`  Skipping: ${project.name} (No matching tags)`));\n      }\n      continue;\n    }\n\n    processedProjects++;\n    if (shouldLog('normal', logLevel)) {\n      console.log(pc.bold(`  Processing: ${project.name}`));\n    }\n    if (shouldLog('verbose', logLevel)) {\n      console.log(pc.gray(`    Tags: ${[...project.tags].join(', ')}`));\n    }\n\n    const globPattern = buildPreciseGlobPattern(\n      project.path,\n      project.tags,\n      effectiveOptions.exclude,\n    );\n\n    for (const tag of project.tags) {\n      const templates = combinedTemplateMap[tag];\n      if (!templates) continue;\n\n      for (const t of templates) {\n        totalTemplates++;\n        // Use plugin inline content or user custom templates\n        const templateContent =\n          t.inlineContent ?? readTemplate(userTemplateDir, t.template);\n        const source = t.inlineContent ? 'Plugin' : 'Custom';\n\n        if (!templateContent) {\n          console.warn(pc.yellow(`    ⚠️  Template not found: ${t.template}`));\n          continue;\n        }\n\n        const header = formatter.getFrontmatter(globPattern, project.name);\n        const formattedContent = formatter.format(\n          templateContent,\n          globPattern,\n          project.name,\n        );\n        const fullContent = `${header}\\n${formattedContent}`;\n\n        // Use just the suffix as the filename (e.g., \"typescript.instructions.md\")\n        // This follows GitHub Copilot's naming convention for path-specific instructions\n        const outputFilename = t.suffix;\n        const outputPath = path.join(targetDir, outputFilename);\n\n        generatedFiles.push(outputFilename);\n\n        if (effectiveOptions.dryRun) {\n          if (shouldLog('normal', logLevel)) {\n            console.log(\n              pc.cyan(\n                `    📝 Would generate: ${pc.bold(outputFilename)} (from ${source})`,\n              ),\n            );\n          }\n        } else {\n          fs.writeFileSync(outputPath, fullContent);\n          if (shouldLog('normal', logLevel)) {\n            console.log(\n              pc.green(\n                `    ✅ Generated: ${pc.bold(outputFilename)} (from ${source})`,\n              ),\n            );\n          }\n        }\n      }\n    }\n  }\n\n  generateSpinner.succeed(\n    `Generated ${generatedFiles.length} files from ${totalTemplates} templates across ${processedProjects} projects`,\n  );\n\n  // 6. Pruning: Ask to remove old files\n  if (!effectiveOptions.dryRun && !effectiveOptions.skipPruning) {\n    await pruneOldFiles(targetDir, generatedFiles, effectiveOptions.force);\n  } else if (effectiveOptions.dryRun && shouldLog('verbose', logLevel)) {\n    console.log(pc.gray('\\nWould check for old files to prune...'));\n  }\n\n  if (shouldLog('normal', logLevel)) {\n    console.log(`\\n${'═'.repeat(60)}`);\n    if (effectiveOptions.dryRun) {\n      console.log(pc.cyan('✨ Dry run complete! No files were modified.'));\n      console.log(\n        pc.gray(\n          `📋 Would have generated ${generatedFiles.length} instruction file(s)`,\n        ),\n      );\n      console.log(\n        pc.gray(\n          `📊 From ${totalTemplates} template(s) across ${processedProjects} project(s)`,\n        ),\n      );\n    } else {\n      console.log(pc.green('✨ AI instruction alignment complete!'));\n      console.log(\n        pc.bold(`📁 Generated ${generatedFiles.length} instruction file(s)`),\n      );\n      console.log(\n        pc.gray(\n          `📊 From ${totalTemplates} template(s) across ${processedProjects} project(s)`,\n        ),\n      );\n      console.log(\n        pc.gray(`📂 Files are located in: ${pc.bold(config.outputDirectory)}`),\n      );\n    }\n    console.log('═'.repeat(60));\n  }\n\n  if (config.target === 'github-copilot' && shouldLog('normal', logLevel)) {\n    console.log('\\n--- VS Code + GitHub Copilot Tip ---');\n    console.log(\n      \"To maximize Copilot's awareness, add this to your workspace .vscode/settings.json:\",\n    );\n    console.log(`\n  \"github.copilot.advanced\": {\n    \"instructions\": \".github/instructions\"\n  }\n    `);\n    console.log(\n      'This tells Copilot to *always* read these files. Restart VS Code after adding.',\n    );\n  }\n}\n\n// --- HELPER FUNCTIONS ---\n\nfunction ensureTargetDir(targetDir: string) {\n  const spinner = ora(`Checking target directory: ${targetDir}`).start();\n  if (!fs.existsSync(targetDir)) {\n    spinner.text = 'Target directory not found. Creating...';\n    try {\n      fs.mkdirSync(targetDir, { recursive: true });\n      spinner.succeed(`Created ${targetDir}`);\n    } catch (error) {\n      spinner.fail(\n        pc.red(\n          `Error creating directory: ${(error as Error).message}. Please check permissions.`,\n        ),\n      );\n      process.exit(1);\n    }\n  } else {\n    spinner.succeed('Target directory OK.');\n  }\n}\n\nasync function ensureRegistryInitialized() {\n  const registry = PluginRegistry.getInstance();\n  // initialize will short-circuit if already initialized\n  await registry.initialize();\n}\n\nasync function getPluginTemplates(): Promise<Record<string, TemplateSource[]>> {\n  await ensureRegistryInitialized();\n  const registry = PluginRegistry.getInstance();\n  let plugins: LanguagePlugin[] = [];\n\n  try {\n    // Direct method call instead of type casting\n    plugins = await registry.getAllPlugins();\n  } catch (e) {\n    console.warn(\n      pc.yellow(`⚠️  Failed to get plugins: ${(e as Error).message}`),\n    );\n    console.warn(\n      pc.yellow(\n        `⚠️  Registry type: ${typeof registry}, has getAllPlugins: ${typeof registry?.getAllPlugins}`,\n      ),\n    );\n  }\n\n  if (plugins.length === 0) {\n    console.warn(pc.yellow('⚠️  No plugins loaded from registry!'));\n  }\n\n  const map: Record<string, TemplateSource[]> = {};\n\n  for (const plugin of plugins) {\n    let templates: TemplateDefinition[] = [];\n    try {\n      const maybeTemplates = await plugin.getTemplates();\n      templates = Array.isArray(maybeTemplates) ? maybeTemplates : [];\n    } catch (e) {\n      console.warn(\n        pc.yellow(\n          `⚠️  Plugin ${plugin.name} getTemplates failed: ${(e as Error).message}`,\n        ),\n      );\n      continue;\n    }\n\n    for (const tmpl of templates) {\n      // Convert template name to suffix: 'lang-typescript' → 'typescript.instructions.md'\n      // 'react-core' → 'react.instructions.md', etc.\n      const baseName = tmpl.name.replace(/^lang-/, '').replace(/-core$/, '');\n      const suffix = `${baseName}.instructions.md`;\n      let content: string | null = null;\n      try {\n        content =\n          typeof tmpl.content === 'function'\n            ? await tmpl.content()\n            : tmpl.content;\n      } catch (e) {\n        console.warn(\n          pc.yellow(\n            `⚠️  Plugin ${plugin.name} template ${tmpl.name} failed to load: ${(e as Error).message}`,\n          ),\n        );\n      }\n\n      for (const tag of tmpl.tags) {\n        if (!map[tag]) map[tag] = [];\n        map[tag].push({\n          template: `plugin:${plugin.name}/${tmpl.name}`,\n          suffix,\n          inlineContent: content ?? undefined,\n        });\n      }\n    }\n  }\n\n  return map;\n}\n\nasync function findProjects(): Promise<Project[]> {\n  await ensureRegistryInitialized();\n  const projects: Project[] = [];\n  const rootPath = process.cwd();\n\n  // Initialize plugin registry and detect projects\n  const registry = PluginRegistry.getInstance();\n  const detectedProjects = await registry.detectAllProjects(rootPath);\n\n  if (detectedProjects.length === 0) {\n    return [];\n  }\n\n  for (const result of detectedProjects) {\n    const relativePath = path.relative(rootPath, result.metadata.projectPath);\n    projects.push({\n      name: sanitizeProjectName(\n        result.metadata.name || path.basename(result.metadata.projectPath),\n      ),\n      path: relativePath || '.',\n      tags: new Set<string>(),\n    });\n  }\n\n  return projects;\n}\n\n/**\n * Sanitize project names for filesystem-safe output filenames.\n * - Convert scoped names like \"@scope/app\" to \"scope-app\"\n * - Replace path separators and whitespace with '-'\n * - Remove leading '@'\n */\nfunction sanitizeProjectName(name: string): string {\n  const trimmed = name.trim();\n  // Replace slashes with dashes, remove leading '@'\n  let sanitized = trimmed.replace(/^@/, '').replace(/[\\\\/\\s]+/g, '-');\n  // Collapse multiple dashes\n  sanitized = sanitized.replace(/-+/g, '-');\n  return sanitized;\n}\n\nasync function analyzeProject(\n  project: Project,\n  depMap: DependencyTagMap,\n  configMap: ConfigFileTagMap,\n  globMap: FileGlobTagMap,\n) {\n  await ensureRegistryInitialized();\n  const projectRoot = path.resolve(process.cwd(), project.path);\n\n  // Strategy 1: Analyze dependencies from any manifest file\n  try {\n    const registry = PluginRegistry.getInstance();\n    const detectedProjects = await registry.detectAllProjects(projectRoot);\n    if (detectedProjects.length > 0) {\n      const projectMetadata = detectedProjects[0].metadata; // Use first match\n\n      if (projectMetadata.tags?.length) {\n        for (const tag of projectMetadata.tags) {\n          project.tags.add(tag);\n        }\n      }\n\n      for (const dep in projectMetadata.dependencies) {\n        // Check both the full dependency name and the package/module name\n        if (depMap[dep]) {\n          project.tags.add(depMap[dep]);\n        }\n\n        // For scoped packages like @scope/pkg or group:artifact, try the base name too\n        const baseName = dep.split(/[@/:]/g).pop();\n        if (baseName && depMap[baseName]) {\n          project.tags.add(depMap[baseName]);\n        }\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Could not analyze dependencies for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n\n  // Strategy 2: Analyze key config files\n  try {\n    for (const file in configMap) {\n      const tag = configMap[file];\n      const configPath = path.join(projectRoot, file);\n      if (fs.existsSync(configPath)) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Error scanning config files for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n\n  // Strategy 3: Analyze file globs\n  try {\n    for (const pattern in globMap) {\n      const tag = globMap[pattern];\n      // Use 'glob' package for async globbing\n      const results = await glob(pattern, {\n        cwd: projectRoot,\n        nodir: true,\n        dot: true, // Include dotfiles if needed, though 'src' patterns usually don't\n      });\n      if (results.length > 0) {\n        project.tags.add(tag);\n      }\n    }\n  } catch (e) {\n    console.warn(\n      pc.yellow(\n        `⚠️  Error scanning file globs for ${project.name}: ${(e as Error).message}`,\n      ),\n    );\n  }\n}\n\nfunction readTemplate(dir: string, templateFile: string): string | null {\n  const p = path.join(dir, templateFile);\n  try {\n    return fs.readFileSync(p, 'utf-8');\n  } catch (_e) {\n    return null; // Will be handled in the main function\n  }\n}\n\nasync function pruneOldFiles(\n  targetDir: string,\n  generatedFiles: string[],\n  force = false,\n) {\n  const existingFiles = fs\n    .readdirSync(targetDir)\n    .filter((f) => f.endsWith('.md'));\n\n  const oldFiles = existingFiles.filter((f) => !generatedFiles.includes(f));\n\n  if (oldFiles.length > 0) {\n    console.warn(\n      pc.yellow(\n        `\\n⚠️  Found ${oldFiles.length} instruction files that are no longer generated:`,\n      ),\n    );\n    for (const f of oldFiles) {\n      console.warn(pc.yellow(`  - ${f}`));\n    }\n\n    let prune = force;\n\n    if (!force) {\n      const answer = await inquirer.prompt([\n        {\n          type: 'confirm',\n          name: 'prune',\n          message: `Do you want to delete these ${oldFiles.length} old files?`,\n          default: false,\n        },\n      ]);\n      prune = answer.prune;\n    }\n\n    if (prune) {\n      let deleteCount = 0;\n      for (const file of oldFiles) {\n        try {\n          fs.unlinkSync(path.join(targetDir, file));\n          deleteCount++;\n        } catch (e) {\n          console.error(\n            pc.red(`  ❌ Error deleting ${file}: ${(e as Error).message}`),\n          );\n        }\n      }\n      console.log(`✅ Pruned ${deleteCount} old files.`);\n    }\n  }\n}\n","import * as fs from 'node:fs';\nimport * as path from 'node:path';\nimport {\n  loadUserConfig,\n  mergeConfigs,\n  validateInstructions,\n} from '@el-j/magic-helix-core';\nimport ora from 'ora';\nimport pc from 'picocolors';\n\n/**\n * The 'validate' command.\n * Checks instruction files for quality based on awesome-ai-system-prompts best practices.\n */\nexport async function validate() {\n  console.log(\n    pc.cyan('🔍 Validating instruction files with quality scoring...\\n'),\n  );\n\n  const spinner = ora('Loading configuration...').start();\n\n  // Load config\n  const userConfig = loadUserConfig();\n  const config = mergeConfigs(userConfig);\n  spinner.succeed('Configuration loaded.');\n\n  const targetDir = path.resolve(\n    process.cwd(),\n    config.outputDirectory as string,\n  );\n\n  // Check if directory exists\n  if (!fs.existsSync(targetDir)) {\n    spinner.fail(\n      pc.red(\n        `❌ Output directory ${config.outputDirectory} does not exist. Run 'magic-helix run' first.`,\n      ),\n    );\n    return;\n  }\n\n  // Find all .md files\n  const files = fs.readdirSync(targetDir).filter((f) => f.endsWith('.md'));\n\n  if (files.length === 0) {\n    console.log(\n      pc.yellow(\"No instruction files found. Run 'magic-helix run' first.\"),\n    );\n    return;\n  }\n\n  console.log(pc.gray(`Checking ${files.length} instruction file(s)...\\n`));\n\n  // Telemetry (optional): fall back to no-op if unavailable\n  let telemetry: { track: (event: unknown) => void } = { track: () => {} };\n  try {\n    const core = await import('@el-j/magic-helix-core');\n    // Check if createTelemetry is available in the imported core module\n    const coreExports = core as Record<string, unknown>;\n    if (typeof coreExports.createTelemetry === 'function') {\n      const createTelemetry = coreExports.createTelemetry as (\n        config: Record<string, unknown>,\n      ) => { track: (event: unknown) => void };\n      telemetry = createTelemetry({});\n    }\n  } catch {\n    // ignore if core import fails in test/browser\n  }\n\n  let passCount = 0;\n  let failCount = 0;\n  const results: Array<{ file: string; score: number; grade: string }> = [];\n\n  for (const file of files) {\n    const filePath = path.join(targetDir, file);\n\n    try {\n      const content = fs.readFileSync(filePath, 'utf-8');\n\n      // Run quality validation\n      const quality = validateInstructions(content);\n      const grade = getQualityGrade(quality.overallScore);\n\n      results.push({ file, score: quality.overallScore, grade });\n\n      if (quality.overallScore >= 70) {\n        passCount++;\n      } else {\n        failCount++;\n      }\n\n      // Display individual file results\n      const scoreColor =\n        quality.overallScore >= 90\n          ? pc.green\n          : quality.overallScore >= 70\n            ? pc.blue\n            : pc.yellow;\n\n      console.log(\n        scoreColor(`${grade} ${quality.overallScore}/100`) +\n          pc.gray(` - ${file}`),\n      );\n\n      if (quality.missingElements.length > 0) {\n        console.log(\n          pc.red(`     Missing: ${quality.missingElements.join(', ')}`),\n        );\n      }\n\n      if (quality.recommendations.length > 0 && quality.overallScore < 90) {\n        console.log(pc.gray(`     Tip: ${quality.recommendations[0]}`));\n      }\n\n      // Track per-file validation result\n      telemetry.track({\n        type: 'instruction_validation',\n        file,\n        score: quality.overallScore,\n        structureScore: quality.structureScore,\n        clarityScore: quality.clarityScore,\n        completenessScore: quality.completenessScore,\n        missingCount: quality.missingElements.length,\n      });\n    } catch (e) {\n      failCount++;\n      console.log(pc.red(`ERROR - ${file}: ${(e as Error).message}`));\n    }\n  }\n\n  // Display summary\n  console.log(pc.bold('\\n=== Validation Summary ===\\n'));\n  console.log(pc.green(`✅ Passed (≥70): ${passCount}`));\n  console.log(pc.red(`❌ Failed (<70): ${failCount}`));\n\n  const avgScore =\n    results.reduce((sum, r) => sum + r.score, 0) / results.length;\n  console.log(pc.cyan(`📊 Average Score: ${Math.round(avgScore)}/100`));\n\n  telemetry.track({\n    type: 'summary',\n    files: results.length,\n    pass: passCount,\n    fail: failCount,\n    averageScore: Math.round(avgScore),\n  });\n\n  if (failCount === 0 && avgScore >= 80) {\n    console.log(pc.green('\\n✨ All instruction files meet quality standards!'));\n  } else if (failCount > 0) {\n    console.log(\n      pc.yellow(\n        `\\n⚠️  ${failCount} file(s) need improvement. Run with --verbose for details.`,\n      ),\n    );\n  }\n}\n\nfunction getQualityGrade(score: number): string {\n  if (score >= 90) return 'A';\n  if (score >= 80) return 'B';\n  if (score >= 70) return 'C';\n  if (score >= 60) return 'D';\n  return 'F';\n}\n","#!/usr/bin/env node\n\nimport { readFileSync } from 'node:fs';\nimport { realpathSync } from 'node:fs';\nimport { dirname, join, resolve } from 'node:path';\nimport { fileURLToPath } from 'node:url';\nimport { Command } from 'commander';\nimport pc from 'picocolors';\nimport { clean } from './commands/clean';\nimport { init } from './commands/init';\nimport { list } from './commands/list';\nimport { pluginsCommand } from './commands/plugins';\nimport { refresh } from './commands/refresh';\nimport { run } from './commands/run';\nimport { validate } from './commands/validate';\n\n// This is the main entry point for the CLI tool.\n// It uses 'commander' to set up sub-commands: 'init' and 'run'.\n\n// Read version from 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@el-j/magic-agent-helix",
-  "version": "4.0.0-beta.3",
+  "version": "4.0.0-beta.4",
   "type": "module",
   "description": "A CLI to inspect a project and generate granular, path-specific AI instructions for agents like GitHub Copilot.",
   "engines": {