@eir-labs/coltrane 0.5.0 → 0.5.1

package/README.md

@@ -20,11 +20,33 @@
 ## Run it
 
 ```bash
-git clone <repo-url> coltrane && cd coltrane
-npm install && npm run build
+npm install -g @eir-labs/coltrane
 ```
 
-Open Claude Code in this directory and say **hi**. The repo ships its own `.mcp.json`, so Coltrane's MCP server starts on its own — nothing to wire up. On a fresh clone, Claude offers to calibrate the instrument to you before any work starts.
+Three verbs and a JSON file:
+
+```bash
+coltrane validate                       # load the genome; non-zero exit on any error
+coltrane dispatch <standard> --input @in.json --depth skim
+coltrane trace <output-id>              # walk a result back to its root signals
+```
+
+`coltrane validate` is the one worth wiring into CI. It exits non-zero on any definition the
+loader cannot resolve, which turns a genome change from something a person has to remember to
+check into a job that fails in seconds without spending a token.
+
+**As an MCP server instead.** Point `.mcp.json` at the installed package and the
+`mcp__coltrane__*` tools appear in any MCP client:
+
+```json
+{ "mcpServers": { "coltrane": {
+    "command": "node",
+    "args": ["./node_modules/@eir-labs/coltrane/dist/src/server_entry.js"],
+    "env": { "COLTRANE_GENOME": "${PWD}" } } } }
+```
+
+Or clone this repo and open Claude Code in it — it ships its own `.mcp.json`, and on a fresh
+clone Claude offers to calibrate the instrument to you before any work starts.
 
 ## What this is
 
@@ -39,7 +61,7 @@ The bet underneath it: the reason jazz works is that music theory is well-define
 **Traceability — what ran, what changed, how it ran, why this result.**
 Every gig seals a `genome_hash` + `run_fingerprint` into an append-only ledger, and every output knows its parents. You can walk any result back to the raw input and the wiring that produced it — which standard ran, which agents filled which chairs, and which outputs fed which.
 
-`genome_hash` is a **structural** hash: it covers the standard's phase graph and each agent's slug, primitives, `input_types`, `output_types`, and domain. It deliberately does **not** cover an agent's `identity`, `method`, `constraints`, `behavioral_primitives`, `allowed_tools`, model tier, or `skill_slugs`. Two genomes that differ only in those fields produce the same `genome_hash` — and therefore the same `run_fingerprint` when their outputs coincide. So the chain answers *"was the wiring the same?"*, not *"was the prompt the same?"*. Authoring-time `content_hash`/`effective_hash` (sealed by `agent_define` and friends) *do* cover the full definition bytes; those are the hashes to compare when you need behavioral identity.
+`genome_hash` is a **structural** hash: it covers the standard's phase graph and each agent's slug, primitives, `input_types`, `output_types`, and domain. It deliberately does **not** cover an agent's `identity`, `method`, `constraints`, `behavioral_primitives`, `allowed_tools`, model tier, or `skill_slugs`. Two genomes that differ only in those fields produce the same `genome_hash` — and therefore the same `run_fingerprint` when their outputs coincide. So the chain answers *"was the wiring the same?"*, not *"was the prompt the same?"*. Authoring-time `content_hash`/`effective_hash` (sealed by `agent_define` and friends) *do* cover the full definition bytes; those are the hashes to compare when you need behavioral identity. Resume and reuse fold a third hash, `producers_sha`, over the whole agent definition plus each skill's verified `code_hash` — so an edit under a stable slug cannot silently splice two genomes together across a resume.
 
 **Reproducibility — can I run it reliably? Is it correct? Is it true?**
 The same genome replays byte-for-byte. The fingerprint distinguishes an honest replay from a tamper, so "it worked" becomes a checkable claim instead of a vibe.
@@ -60,6 +82,13 @@ Coltrane standards work the same way. The leverage is up top, at **definition ti
 - **Orientation is everything.** Players aren't freely swappable; the orientation of an agent is the single biggest predictor of whether the band coheres. Claude can play almost any instrument — you just have to point it at the right method *before* the work starts.
 - **The score is built at runtime.** Prompts don't live in hand-edited `.md` files. The work is **encoded into the genome** and **decoded at runtime** for whatever model is playing (Claude today; the pattern is model-agnostic). An agent doesn't wake up and figure out its life — it opens its eyes to a seat, an instrument, a score, and a downbeat. Then it plays.
 
+## Since the first release
+
+- **A command line.** The package shipped only an MCP server, so the engine was reachable from an interactive client and nowhere else — not CI, not cron, not a container. `coltrane` fixes that.
+- **Checkpoint and resume.** A run that stops partway no longer discards the phases that finished. `--resume` continues from the last sealed phase, and refuses rather than silently running cold if the genome, the producers, the payload or the model moved since.
+- **Improvement as a measurement.** `improvement_report` buckets a producer's outputs by version and by model tier, reporting cost and quality together — so "did that change help?" and "does the cheaper model still clear the bar?" are questions with answers. Unmeasured quantities report `null`, never `0`.
+- **The skill loop.** Browse, inspect, execute against fixtures, evolve, promote. A candidate runs against the current fixtures in a throwaway copy and lands only on a clean pass, so a skill cannot regress through that door — and a code skill must pass its own fixtures, deterministically, to become `active`.
+
 ## What's next
 
 - **Memory.** Cut the context a thread needs at cold start. A shared memory layer the runtime can fold into what it already constructs up front. 10x reduction in token usage is the target.

package/dist/src/cli.d.ts

@@ -28,7 +28,7 @@ export interface CliIO {
     /** Injected for tests. Production reads stdin for `--input -`. */
     stdin?: () => string;
 }
-export declare const USAGE = "coltrane 0.5.0\n\n  coltrane validate                     load the genome; exit non-zero on load errors\n  coltrane dispatch <standard>          run a standard\n  coltrane monitor <gig-id>             report a gig's progress\n  coltrane logs <gig-id>                per-chair logs for a gig\n  coltrane abort <gig-id>               stop a running gig\n  coltrane trace <output-id>            walk an output's provenance\n  coltrane simulate <standard>          cost/shape a standard without running it\n  coltrane health                       engine + store health\n  coltrane serve                        run the MCP server on stdio\n\nOptions\n  --input <json|@file|->                dispatch payload; @file reads a file, - reads stdin\n  --depth <skim|standard|deep>          tighten the per-chair turn cap\n  --budget <dollars>                    per-gig ceiling; the run stops when it is gone\n  --reuse                               allow chair-level reuse of prior sealed outputs\n  --resume <gig-id>                     continue a gig that died mid-pipeline\n  --wait                                block until the run finishes\n  --follow                              poll until the gig reaches a terminal state\n  --direction <upstream|downstream|both>  for trace\n  --json                                print the raw result to stdout\n  --genome <path>                       genome root (default: $COLTRANE_GENOME or cwd)\n  --help, --version\n";
+export declare const USAGE = "coltrane 0.5.1\n\n  coltrane validate                     load the genome; exit non-zero on load errors\n  coltrane dispatch <standard>          run a standard\n  coltrane monitor <gig-id>             report a gig's progress\n  coltrane logs <gig-id>                per-chair logs for a gig\n  coltrane abort <gig-id>               stop a running gig\n  coltrane trace <output-id>            walk an output's provenance\n  coltrane simulate <standard>          cost/shape a standard without running it\n  coltrane health                       engine + store health\n  coltrane serve                        run the MCP server on stdio\n\nOptions\n  --input <json|@file|->                dispatch payload; @file reads a file, - reads stdin\n  --depth <skim|standard|deep>          tighten the per-chair turn cap\n  --budget <dollars>                    per-gig ceiling; the run stops when it is gone\n  --reuse                               allow chair-level reuse of prior sealed outputs\n  --resume <gig-id>                     continue a gig that died mid-pipeline\n  --wait                                block until the run finishes\n  --follow                              poll until the gig reaches a terminal state\n  --direction <upstream|downstream|both>  for trace\n  --json                                print the raw result to stdout\n  --genome <path>                       genome root (default: $COLTRANE_GENOME or cwd)\n  --help, --version\n";
 interface Parsed {
     cmd: string | undefined;
     positional: string[];

package/dist/src/server_relay.d.ts

@@ -50,6 +50,8 @@ export declare function buildRestartError(id: string | number | null, reason: st
 export declare function buildNoChildError(id: string | number | null, method: string): JsonRpcMessage;
 /** How long a fresh child gets to answer the replayed `initialize` before the restart FAILS. */
 export declare const HANDSHAKE_REPLAY_TIMEOUT_MS = 10000;
+/** How long the OUTGOING child gets to honour SIGTERM before the relay escalates to SIGKILL. */
+export declare const GRACEFUL_EXIT_TIMEOUT_MS = 2000;
 /** The outcome of one child swap. `ok: false` must reach the client — see buildRestartError. */
 export type RestartOutcome = {
     ok: true;

package/dist/src/server_relay.js

@@ -142,6 +142,8 @@ export function buildNoChildError(id, method) {
 }
 /** How long a fresh child gets to answer the replayed `initialize` before the restart FAILS. */
 export const HANDSHAKE_REPLAY_TIMEOUT_MS = 10_000;
+/** How long the OUTGOING child gets to honour SIGTERM before the relay escalates to SIGKILL. */
+export const GRACEFUL_EXIT_TIMEOUT_MS = 2_000;
 /** Parse the `initialize` request's id from a captured raw line (null if unparseable). */
 export function initRequestId(line) {
     if (!line)
@@ -221,17 +223,38 @@ export async function runRelay(opts) {
     };
     forwardChildToParent(child);
     const restartChild = async () => {
-        if (child.exitCode === null && child.signalCode === null) {
-            child.kill("SIGTERM");
+        // `dying` is captured deliberately. `child` is reassigned a few lines below, and the
+        // escalation timer must be able to reach exactly ONE process: the one it was armed for.
+        //
+        // It used to close over `child` instead, and `Promise.race` discards the loser's value but
+        // does not cancel it — so on the ordinary path (old child exits promptly, the exit branch
+        // wins) the timer stayed armed, fired 2s later, read the CURRENT `child`, found the
+        // healthy replacement, and SIGKILLed it. Every restart killed the process it had just
+        // reported as serving. The relay answered "New child process is up and serving", and about
+        // two seconds later there was no server at all.
+        //
+        // Downstream that surfaced two ways, depending on where the next call landed: after the
+        // exit was observed, `buildNoChildError` — a visible error telling you to restart a client
+        // that had just restarted successfully; before it, a write into a dying pipe, silently
+        // discarded, and an unbounded hang. #260 made a FAILED swap reportable; this made a
+        // SUCCESSFUL one fatal, which is why it hid behind it.
+        const dying = child;
+        if (dying.exitCode === null && dying.signalCode === null) {
+            dying.kill("SIGTERM");
             // Give it 2s to exit cleanly; otherwise SIGKILL.
+            let escalate;
             await Promise.race([
-                new Promise((res) => child.once("exit", () => res())),
-                new Promise((res) => setTimeout(() => {
-                    if (child.exitCode === null && child.signalCode === null)
-                        child.kill("SIGKILL");
-                    res();
-                }, 2000)),
+                new Promise((res) => dying.once("exit", () => res())),
+                new Promise((res) => {
+                    escalate = setTimeout(() => {
+                        if (dying.exitCode === null && dying.signalCode === null)
+                            dying.kill("SIGKILL");
+                        res();
+                    }, GRACEFUL_EXIT_TIMEOUT_MS);
+                }),
             ]);
+            // Belt to the `dying` brace: nothing should be left armed once the swap moves on.
+            clearTimeout(escalate);
         }
         child = spawnChild(opts.entryPath);
         forwardChildToParent(child);

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package/dist/src/skill_subprocess.d.ts

@@ -29,26 +29,18 @@ export interface ExecuteResult {
     duration_ms: number;
 }
 /**
- * Permission tier → Node --permission flags, SCOPED TO THE SKILL.
+ * The runtime floor for skill execution, checked where it can be explained.
  *
- * This used to be `--allow-fs-read=*` for every tier, with a comment asserting that tier 0
- * "cannot write, spawn, or reach the network". Probed through `executeSkill` on a real
- * machine, a tier-0 skill read `/etc/passwd`, read all 77 of the parent's environment
- * variables, and completed an outbound HTTPS request. `--allow-fs-read=*` is literally
- * "read every file", so the first was never confined at all.
+ * The sandbox spawns with `--permission`, which is Node 22+. On Node 20 the child dies with
+ * `node: bad option: --permission` — a message that names the flag rather than the reason, and
+ * appears once per skill rather than once per process. `engines` in package.json says `>=22`,
+ * but npm treats that as advisory, so a consumer on 20 reaches here anyway.
  *
- * The reads are now scoped to the skill's own package directory plus the runner that has to
- * import it. `tests/skill_sandbox_confinement.test.ts` probes the capability rather than the
- * flag string, because asserting on flags is how the previous claim survived being false.
- *
- * WHAT THIS DOES NOT DO: Node's permission model has no network gate. There is no flag here
- * that stops `fetch`, and there was never one — the old guarantee was unimplementable in this
- * runtime, not merely misconfigured. A pre-open-source ancestor of this engine ran skills under
- * Deno (`--allow-read=<dir>` plus a net allowlist), which is the runtime with the primitive
- * this wants. Until that returns, an outbound request from a skill is possible and is stated
- * rather than denied. What has changed is that the credential is no longer in reach: the child
- * gets an explicit minimal environment (see `skillEnv`), so there is nothing worth exfiltrating.
+ * Refusing loudly is the only honest option. There is no degraded mode: running a skill on a
+ * runtime with no permission model means running it UNSANDBOXED, and silently doing that would
+ * invert the guarantee this module exists to provide.
  */
+export declare const MIN_NODE_FOR_SANDBOX = 22;
 export declare function tierFlags(tier: number, skillDir?: string): string[];
 /**
  * The environment a skill child receives.

package/dist/src/skill_subprocess.js

@@ -32,6 +32,31 @@ const RUNNER = fileURLToPath(new URL("./skill_runner.mjs", import.meta.url));
  * rather than denied. What has changed is that the credential is no longer in reach: the child
  * gets an explicit minimal environment (see `skillEnv`), so there is nothing worth exfiltrating.
  */
+/** Node major running this process. */
+function nodeMajor() {
+    return Number(process.versions.node.split(".")[0] ?? 0);
+}
+/**
+ * The runtime floor for skill execution, checked where it can be explained.
+ *
+ * The sandbox spawns with `--permission`, which is Node 22+. On Node 20 the child dies with
+ * `node: bad option: --permission` — a message that names the flag rather than the reason, and
+ * appears once per skill rather than once per process. `engines` in package.json says `>=22`,
+ * but npm treats that as advisory, so a consumer on 20 reaches here anyway.
+ *
+ * Refusing loudly is the only honest option. There is no degraded mode: running a skill on a
+ * runtime with no permission model means running it UNSANDBOXED, and silently doing that would
+ * invert the guarantee this module exists to provide.
+ */
+export const MIN_NODE_FOR_SANDBOX = 22;
+function assertSandboxCapableRuntime() {
+    const major = nodeMajor();
+    if (major < MIN_NODE_FOR_SANDBOX) {
+        throw new Error(`coltrane needs Node ${MIN_NODE_FOR_SANDBOX}+ to execute skills; this is Node ${process.versions.node}. ` +
+            `Skill execution is sandboxed with --permission, which does not exist before Node ${MIN_NODE_FOR_SANDBOX}. ` +
+            `Running without it would execute skill code unsandboxed, so it is refused rather than degraded.`);
+    }
+}
 export function tierFlags(tier, skillDir) {
     // `RUNNER` lives in this package's dist/; the child must be able to read it to start, and to
     // read the skill it imports. Nothing else.
@@ -124,6 +149,7 @@ export function executeSkill(skillDir, input, timeoutMs = 120_000, tierOverride)
     // SIGTERM-trapping child can't survive the timeout.
     const timeout = typeof meta.timeout_ms === "number" ? Math.min(timeoutMs, meta.timeout_ms) : timeoutMs;
     const started = Date.now();
+    assertSandboxCapableRuntime();
     const dir = realDir(skillDir);
     const res = spawnSync("node", [...tierFlags(tier, dir), RUNNER, dir], {
         input: JSON.stringify(input),
@@ -179,6 +205,7 @@ export async function executeSkillAsync(skillDir, input, timeoutMs = 120_000, op
     // runaway code half cannot outlive its budget.
     const timeout = typeof meta.timeout_ms === "number" ? Math.min(timeoutMs, meta.timeout_ms) : timeoutMs;
     return await new Promise((resolve) => {
+        assertSandboxCapableRuntime();
         const dir = realDir(skillDir);
         const child = spawn("node", [...tierFlags(tier, dir), RUNNER, dir], {
             stdio: ["pipe", "pipe", "pipe"], env: skillEnv(),

package/dist/src/skill_subprocess.js.map

@@ -1 +1 @@
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package/dist/src/version.d.ts

@@ -1,5 +1,5 @@
 /** Engine semver. Keep in lockstep with package.json `version` (enforced by test). */
-export declare const COLTRANE_VERSION = "0.5.0";
+export declare const COLTRANE_VERSION = "0.5.1";
 /**
  * The commit this engine checkout is sitting on, or null when it can't be determined.
  *

package/dist/src/version.js

@@ -1,11 +1,15 @@
 // The engine's version identity — the thing a consumer can assert against.
 //
-// Why this exists: coltrane is not published to npm, so downstreams vendor it as a
-// git clone. Without an exported version there is no way for a consumer to answer
-// "is the engine I just loaded the engine I was built against?" — the only available
-// check was duck-typing two function names, which passes for *every* revision of the
-// engine and therefore proves nothing. A version mismatch then surfaces as a contract
-// failure deep inside a running gig, minutes and dollars in, instead of at boot.
+// Why this exists: a consumer needs to answer "is the engine I just loaded the engine I
+// was built against?" The only available check was duck-typing two function names, which
+// passes for *every* revision of the engine and therefore proves nothing. A version
+// mismatch then surfaces as a contract failure deep inside a running gig, minutes and
+// dollars in, instead of at boot.
+//
+// This predates publication — it was written when downstreams vendored the engine as a
+// git clone and the range in their package.json could not be the answer. It still is not:
+// a semver range says what npm was asked to install, not what got loaded, and the vendored
+// path remains supported.
 //
 // COLTRANE_VERSION is the single source of truth in code and MUST equal package.json's
 // `version` — `tests/version_identity.test.ts` fails the build if they drift.
@@ -13,7 +17,7 @@ import { existsSync, readFileSync, statSync } from "node:fs";
 import { dirname, join, resolve } from "node:path";
 import { fileURLToPath } from "node:url";
 /** Engine semver. Keep in lockstep with package.json `version` (enforced by test). */
-export const COLTRANE_VERSION = "0.5.0";
+export const COLTRANE_VERSION = "0.5.1";
 /**
  * The commit this engine checkout is sitting on, or null when it can't be determined.
  *

package/dist/src/version.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,17 +1,17 @@
 {
   "name": "@eir-labs/coltrane",
-  "version": "0.5.0",
+  "version": "0.5.1",
   "description": "A methodology engine \u2014 a typed substrate for defining agents, composing multi-phase standards, dispatching gigs, and sealing every output to a content-addressed ledger. Ships as an MCP server.",
   "type": "module",
   "license": "Apache-2.0",
   "author": "Eir",
-  "homepage": "https://github.com/eir-dev/coltrane#readme",
+  "homepage": "https://github.com/eir-labs/coltrane#readme",
   "repository": {
     "type": "git",
-    "url": "git+https://github.com/eir-dev/coltrane.git"
+    "url": "git+https://github.com/eir-labs/coltrane.git"
   },
   "bugs": {
-    "url": "https://github.com/eir-dev/coltrane/issues"
+    "url": "https://github.com/eir-labs/coltrane/issues"
   },
   "keywords": [
     "mcp",
@@ -22,7 +22,7 @@
     "workflow-engine"
   ],
   "engines": {
-    "node": ">=20"
+    "node": ">=22"
   },
   "bin": {
     "coltrane": "./dist/src/cli_entry.js",