@eir-labs/coltrane 0.24.12 → 0.24.14

package/dist/src/cli.d.ts

@@ -31,7 +31,7 @@ export interface CliIO {
     /** Injected for tests. Production reads stdin for `--input -`. */
     stdin?: () => string;
 }
-export declare const USAGE = "coltrane 0.24.12\n\n  coltrane validate                     load the genome; exit non-zero on load errors\n  coltrane dispatch <standard>          run a standard\n  coltrane monitor <gig-id>             report a gig's progress\n  coltrane logs <gig-id>                per-chair logs for a gig\n  coltrane abort <gig-id>               stop a running gig\n  coltrane trace <output-id>            walk an output's provenance\n  coltrane simulate <standard>          cost/shape a standard without running it\n  coltrane health                       engine + store health\n  coltrane serve                        run the MCP server on stdio\n  coltrane enqueue <standard>           queue a gig on the LOCAL file queue (no store, no key)\n                                        (env: COLTRANE_QUEUE_DIR \u2014 its absence is the whole\n                                         difference between local and hosted)\n  coltrane work                         claim one queued gig from the org store and run it\n  coltrane work --check                  report whether this box's drain environment is configured\n                                        and exit without claiming (0 ready, 1 not ready)\n                                        (env: COLTRANE_STORE_URL, COLTRANE_STORE_ANON,\n                                         COLTRANE_AGENT_TOKEN; results drain via\n                                         COLTRANE_DRAIN_URL + COLTRANE_DRAIN_KEY;\n                                         checkpoints under COLTRANE_WORKER_CHECKPOINTS,\n                                         default ~/.coltrane/worker-checkpoints;\n                                         exit 0 complete or parked, 1 failed, 3 queue empty)\n\nOptions\n  --input <json|@file|->                dispatch payload; @file reads a file, - reads stdin\n  --depth <skim|standard|deep>          tighten the per-chair turn cap\n  --budget <dollars>                    per-gig ceiling; the run stops when it is gone\n  --reuse                               allow chair-level reuse of prior sealed outputs\n  --resume <gig-id>                     continue a gig that died mid-pipeline\n  --approve <role>=<json|@file>         a human chair's verdict; repeat once per chair\n  --as <name>                           who is approving; sealed as the verdict's author\n  --wait                                block until the run finishes\n  --follow                              poll until the gig reaches a terminal state\n  --direction <upstream|downstream|both>  for trace\n  --json                                print the raw result to stdout\n  --genome <path>                       genome root (default: $COLTRANE_GENOME or cwd)\n  --help, --version\n\nA dispatch that reaches a chair a HUMAN holds parks: it names the waiting chair and exits 0,\nbecause a gig waiting on a person is not a failed gig. Approve it on the resume \u2014\n\n  coltrane dispatch <standard> --resume <gig> \\\n      --approve approve=@verdict.json --as eugene\n\n--input is NOT required on an approve-only resume: when every remaining chair is human the\ncheckpoint's recorded payload stands and the omission inherits it. If you DO pass --input it is\nchecked against the checkpoint, and a disagreement still refuses the resume.\n";
+export declare const USAGE = "coltrane 0.24.14\n\n  coltrane validate                     load the genome; exit non-zero on load errors OR on an\n                                        orphan \u2014 a standards/|domain_types/|agents/ file with no\n                                        genome_mutation seal in the tracked genome ledger\n  coltrane seal-genome [<genome_dir>]   bulk-seal a pre-sealing genome: append a genome_mutation\n                                        seal for every standards/|domain_types/|agents/ file not yet\n                                        sealed, via the blessed sealDefinition path. Content is\n                                        byte-unchanged; a second run seals nothing already sealed.\n                                        (default genome_dir: cwd)\n  coltrane dispatch <standard>          run a standard\n  coltrane monitor <gig-id>             report a gig's progress\n  coltrane logs <gig-id>                per-chair logs for a gig\n  coltrane abort <gig-id>               stop a running gig\n  coltrane trace <output-id>            walk an output's provenance\n  coltrane simulate <standard>          cost/shape a standard without running it\n  coltrane health                       engine + store health\n  coltrane serve                        run the MCP server on stdio\n  coltrane enqueue <standard>           queue a gig on the LOCAL file queue (no store, no key)\n                                        (env: COLTRANE_QUEUE_DIR \u2014 its absence is the whole\n                                         difference between local and hosted)\n  coltrane work                         claim one queued gig from the org store and run it\n  coltrane work --check                  report whether this box's drain environment is configured\n                                        and exit without claiming (0 ready, 1 not ready)\n                                        (env: COLTRANE_STORE_URL, COLTRANE_STORE_ANON,\n                                         COLTRANE_AGENT_TOKEN; results drain via\n                                         COLTRANE_DRAIN_URL + COLTRANE_DRAIN_KEY;\n                                         checkpoints under COLTRANE_WORKER_CHECKPOINTS,\n                                         default ~/.coltrane/worker-checkpoints;\n                                         exit 0 complete or parked, 1 failed, 3 queue empty)\n\nOptions\n  --input <json|@file|->                dispatch payload; @file reads a file, - reads stdin\n  --depth <skim|standard|deep>          tighten the per-chair turn cap\n  --budget <dollars>                    per-gig ceiling; the run stops when it is gone\n  --reuse                               allow chair-level reuse of prior sealed outputs\n  --resume <gig-id>                     continue a gig that died mid-pipeline\n  --approve <role>=<json|@file>         a human chair's verdict; repeat once per chair\n  --as <name>                           who is approving; sealed as the verdict's author\n  --wait                                block until the run finishes\n  --follow                              poll until the gig reaches a terminal state\n  --direction <upstream|downstream|both>  for trace\n  --json                                print the raw result to stdout\n  --genome <path>                       genome root (default: $COLTRANE_GENOME or cwd)\n  --help, --version\n\nA dispatch that reaches a chair a HUMAN holds parks: it names the waiting chair and exits 0,\nbecause a gig waiting on a person is not a failed gig. Approve it on the resume \u2014\n\n  coltrane dispatch <standard> --resume <gig> \\\n      --approve approve=@verdict.json --as eugene\n\n--input is NOT required on an approve-only resume: when every remaining chair is human the\ncheckpoint's recorded payload stands and the omission inherits it. If you DO pass --input it is\nchecked against the checkpoint, and a disagreement still refuses the resume.\n";
 interface Parsed {
     cmd: string | undefined;
     positional: string[];

package/dist/src/cli.js

@@ -23,6 +23,9 @@
  *   - `--json` prints the tool's `data` verbatim; without it, a short human summary.
  */
 import { dispatchTool, bootstrapServerDeps } from "./server.js";
+import { detectGenomeOrphans } from "./genome_writer.js";
+import { sealGenome } from "./seal_genome.js";
+import { FileLedger, defaultGenomeLedgerPath } from "./ledger.js";
 import { COLTRANE_VERSION } from "./version.js";
 import { workOnce } from "./worker.js";
 import { openLocalQueue, selectQueueBacking, LOCAL_QUEUE_DIR_VAR } from "./local_queue.js";
@@ -33,7 +36,14 @@ import { dockerComposeRealizer } from "./venue_realizer.js";
 import { readFileSync } from "node:fs";
 export const USAGE = `coltrane ${COLTRANE_VERSION}
 
-  coltrane validate                     load the genome; exit non-zero on load errors
+  coltrane validate                     load the genome; exit non-zero on load errors OR on an
+                                        orphan — a standards/|domain_types/|agents/ file with no
+                                        genome_mutation seal in the tracked genome ledger
+  coltrane seal-genome [<genome_dir>]   bulk-seal a pre-sealing genome: append a genome_mutation
+                                        seal for every standards/|domain_types/|agents/ file not yet
+                                        sealed, via the blessed sealDefinition path. Content is
+                                        byte-unchanged; a second run seals nothing already sealed.
+                                        (default genome_dir: cwd)
   coltrane dispatch <standard>          run a standard
   coltrane monitor <gig-id>             report a gig's progress
   coltrane logs <gig-id>                per-chair logs for a gig
@@ -189,7 +199,7 @@ export async function runCli(argv, io) {
         io.out(USAGE);
         return cmd === undefined ? 2 : 0;
     }
-    const KNOWN = ["validate", "dispatch", "enqueue", "monitor", "logs", "abort", "trace", "simulate", "health", "serve", "work"];
+    const KNOWN = ["validate", "seal-genome", "dispatch", "enqueue", "monitor", "logs", "abort", "trace", "simulate", "health", "serve", "work"];
     if (!KNOWN.includes(cmd)) {
         line(io, `unknown command "${cmd}"\n`);
         io.err(USAGE);
@@ -330,6 +340,30 @@ export async function runCli(argv, io) {
             (res.error ? ` — ${res.error}` : ""));
         return code;
     }
+    // `seal-genome` is the bulk-migration door (WO-F07 Article I). It needs ONLY the genome ledger
+    // and the genome dir — not bootstrapServerDeps, which would load every definition and couple the
+    // command to server init for no benefit. It reuses sealDefinition (the blessed write path), so it
+    // never reimplements sealing; it only iterates it. Exit 0 when every file is sealed-or-skipped,
+    // exit 1 if any file errored — a partial seal leaves detectGenomeOrphans non-empty, so exit 0
+    // would falsely signal a fully-sealed genome (matching the validate exit-code contract).
+    if (cmd === "seal-genome") {
+        const genome_dir = positional[0] ?? process.cwd();
+        let report;
+        try {
+            report = sealGenome(genome_dir, new FileLedger(defaultGenomeLedgerPath(genome_dir)));
+        }
+        catch (e) {
+            line(io, `seal-genome failed: ${e instanceof Error ? e.message : String(e)}`);
+            return 1;
+        }
+        for (const { path, error } of report.errors)
+            line(io, `error  ${path}: ${error}`);
+        if (emitJson(io, json, report))
+            return report.errors.length === 0 ? 0 : 1;
+        line(io, `sealed ${report.sealed.length}, skipped ${report.skipped.length}` +
+            (report.errors.length ? `, ${report.errors.length} error(s)` : ""));
+        return report.errors.length === 0 ? 0 : 1;
+    }
     // Booting loads the genome and constructs the invoker, so it happens only after the command
     // is known to be real — `--help` and a typo must not pay for it or fail inside it.
     let deps;
@@ -347,27 +381,51 @@ export async function runCli(argv, io) {
             const r = await call("genome_reload", {});
             const data = r.data;
             const errs = data?.load_errors ?? [];
+            // WO-F06 — the orphan invariant, folded into the CI gate so it ships wherever a genome repo
+            // already runs `coltrane validate`, with no per-repo .github/ wiring. Every genome file under
+            // standards/ | domain_types/ | agents/ must carry a genome_mutation seal in the git-tracked
+            // genome ledger; a file with none is an orphan — "no identity, outside the substrate"
+            // (src/genome_writer.ts:1-6). deps.ledger reads the genome ledger (defaultGenomeLedgerPath),
+            // so the seals CI sees are exactly the ones the repo shipped.
+            //
+            // Enforced ONLY when the genome ledger actually holds seals. A genome that ships no ledger at
+            // all predates sealing and has nothing to enforce against — failing it would break every bare,
+            // unsealed fixture and every pre-WO-F06 genome, which is not this gate's job. deps.genome_dir
+            // is absent in hosted/bare-deps mode, where there are no genome files on disk to scan.
+            let orphans = [];
+            if (deps.genome_dir) {
+                const seals = deps.ledger.query({ kind: "genome_mutation" });
+                if (seals.length > 0)
+                    orphans = detectGenomeOrphans(deps.genome_dir, deps.ledger);
+            }
             if (emitJson(io, json, r.data))
-                return errs.length === 0 ? 0 : 1;
-            if (errs.length === 0) {
-                // `changes` is {added|modified|removed} -> {class -> slug[]}, so a count means summing
-                // the leaf arrays. Reporting a bare `undefined` here would be its own small dishonesty.
-                const c = data?.changes;
-                const counts = c
-                    ? Object.entries(c)
-                        .map(([k, byClass]) => [k, Object.values(byClass ?? {}).reduce((n, a2) => n + (a2?.length ?? 0), 0)])
-                        .filter(([, n]) => n > 0)
-                        .map(([k, n]) => `${n} ${k}`)
-                        .join(", ")
-                    : "";
-                io.out(`genome ok${counts ? ` — ${counts}` : ", no changes"}\n`);
-                return 0;
+                return errs.length === 0 && orphans.length === 0 ? 0 : 1;
+            // Non-zero exit is the whole feature: this is what a CI job branches on. Load errors first —
+            // a genome that will not load is a harder failure than one that loads with an unsealed file.
+            if (errs.length > 0) {
+                line(io, `genome has ${errs.length} load error(s):`);
+                for (const e of errs)
+                    line(io, `  ${typeof e === "string" ? e : JSON.stringify(e)}`);
+                return 1;
             }
-            // Non-zero exit is the whole feature: this is what a CI job branches on.
-            line(io, `genome has ${errs.length} load error(s):`);
-            for (const e of errs)
-                line(io, `  ${typeof e === "string" ? e : JSON.stringify(e)}`);
-            return 1;
+            if (orphans.length > 0) {
+                line(io, `genome has ${orphans.length} orphan(s) — a genome file with no ledger seal has no identity:`);
+                for (const o of orphans)
+                    line(io, `  ${o}`);
+                return 1;
+            }
+            // `changes` is {added|modified|removed} -> {class -> slug[]}, so a count means summing
+            // the leaf arrays. Reporting a bare `undefined` here would be its own small dishonesty.
+            const c = data?.changes;
+            const counts = c
+                ? Object.entries(c)
+                    .map(([k, byClass]) => [k, Object.values(byClass ?? {}).reduce((n, a2) => n + (a2?.length ?? 0), 0)])
+                    .filter(([, n]) => n > 0)
+                    .map(([k, n]) => `${n} ${k}`)
+                    .join(", ")
+                : "";
+            io.out(`genome ok${counts ? ` — ${counts}` : ", no changes"}\n`);
+            return 0;
         }
         case "dispatch": {
             const standard = positional[0];

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package/dist/src/genome_writer.d.ts

@@ -7,9 +7,11 @@ import { type Ledger } from "./ledger.js";
  * an existing slug is recoverable, not just provably-changed.
  *
  * When <subdir>/<slug>.json already exists with DIFFERENT bytes, the old bytes are
- * snapshotted to .coltrane/history/<subdir>/<slug>/<oldContentHash>.json (gitignored,
- * local) before the overwrite. Identical bytes → no snapshot (idempotent no-op).
- * Returns the prior content hash when an overwrite displaced real content.
+ * snapshotted to genome/history/<subdir>/<slug>/<oldContentHash>.json before the overwrite
+ * (WO-F06: a git-TRACKED sibling of genome/ledger.jsonl, so a fresh clone carries prior
+ * versions instead of losing them to the gitignored .coltrane/). Identical bytes → no
+ * snapshot (idempotent no-op). Returns the prior content hash when an overwrite displaced
+ * real content.
  */
 export declare function writeGenomeFileVersioned(genome_dir: string, subdir: string, slug: string, jsonText: string): {
     overwritten: boolean;
@@ -65,3 +67,25 @@ export declare function sealSkillPackage(def: Record<string, unknown> & {
     dependency_hash: string;
     effective_hash: string;
 };
+/** The genome subdirectories whose files each carry a substrate identity — a flat `<slug>.json`
+ *  whose slug must match a `genome_mutation` seal. `skills/` is deliberately excluded: a skill is a
+ *  PACKAGE directory (`skills/<slug>/meta.json …`, see sealSkillPackage), not a flat file, so it
+ *  needs a different scan and is reserved for a follow-up (WO-F06 non-goal). */
+export declare const ORPHAN_SCAN_SUBDIRS: readonly ["standards", "domain_types", "agents"];
+/**
+ * The orphan detector (WO-F06). Correlate every genome file under `standards/`, `domain_types/`,
+ * `agents/` with the `kind:"genome_mutation"` seals in the (git-tracked) genome ledger, and return
+ * the files that have NONE — the orphans this module's header calls "outside the substrate": a
+ * hand-edited file with no ledger entry has no identity.
+ *
+ * A file's slug is its basename without `.json`. It is considered sealed when some seal's
+ * `subject_slug` equals that slug, OR equals that slug carrying a version tag (`<slug>@v2` — the
+ * identity `type_extend`/`agent_evolve` record while still materialising `<slug>.json`, so the
+ * versioned seal must not read as leaving the base file an orphan). Returns genome-relative paths
+ * (`standards/orphan.json`) so a caller can name the offending file to CI.
+ *
+ * PURE over its two inputs: it makes no decision about WHETHER orphans should fail a run — that
+ * policy (only enforced once the genome ledger actually holds seals) lives at the `coltrane validate`
+ * call site, so this stays a reusable "which files lack a seal" query.
+ */
+export declare function detectGenomeOrphans(genome_dir: string, ledger: Ledger): string[];

package/dist/src/genome_writer.js

@@ -4,7 +4,7 @@
 // genome_dir is given) write the content-addressed file AND append a ledger entry keyed
 // standard_slug="agent_define", genome_hash=effective_hash. A hand-edited file with no
 // such ledger entry is an orphan — no identity, outside the substrate.
-import { writeFileSync, mkdirSync, existsSync, readFileSync } from "node:fs";
+import { writeFileSync, mkdirSync, existsSync, readFileSync, readdirSync } from "node:fs";
 import { writeFileAtomic } from "./fs_atomic.js";
 import { join } from "node:path";
 import { randomUUID } from "node:crypto";
@@ -18,9 +18,11 @@ import { LEDGER_SCHEMA_VERSION } from "./ledger.js";
  * an existing slug is recoverable, not just provably-changed.
  *
  * When <subdir>/<slug>.json already exists with DIFFERENT bytes, the old bytes are
- * snapshotted to .coltrane/history/<subdir>/<slug>/<oldContentHash>.json (gitignored,
- * local) before the overwrite. Identical bytes → no snapshot (idempotent no-op).
- * Returns the prior content hash when an overwrite displaced real content.
+ * snapshotted to genome/history/<subdir>/<slug>/<oldContentHash>.json before the overwrite
+ * (WO-F06: a git-TRACKED sibling of genome/ledger.jsonl, so a fresh clone carries prior
+ * versions instead of losing them to the gitignored .coltrane/). Identical bytes → no
+ * snapshot (idempotent no-op). Returns the prior content hash when an overwrite displaced
+ * real content.
  */
 export function writeGenomeFileVersioned(genome_dir, subdir, slug, jsonText) {
     const dir = join(genome_dir, subdir);
@@ -31,7 +33,7 @@ export function writeGenomeFileVersioned(genome_dir, subdir, slug, jsonText) {
         const oldBytes = readFileSync(path, "utf-8");
         if (oldBytes !== jsonText) {
             const prior = sha256Hex(oldBytes);
-            const histDir = join(genome_dir, ".coltrane", "history", subdir, slug);
+            const histDir = join(genome_dir, "genome", "history", subdir, slug);
             mkdirSync(histDir, { recursive: true });
             // History first, and atomically: this is the only copy of the bytes about to be replaced.
             writeFileAtomic(join(histDir, `${prior}.json`), oldBytes);
@@ -197,4 +199,48 @@ export function sealSkillPackage(def, ledger, genome_dir) {
     }
     return { content_hash, dependency_hash, effective_hash };
 }
+/** The genome subdirectories whose files each carry a substrate identity — a flat `<slug>.json`
+ *  whose slug must match a `genome_mutation` seal. `skills/` is deliberately excluded: a skill is a
+ *  PACKAGE directory (`skills/<slug>/meta.json …`, see sealSkillPackage), not a flat file, so it
+ *  needs a different scan and is reserved for a follow-up (WO-F06 non-goal). */
+export const ORPHAN_SCAN_SUBDIRS = ["standards", "domain_types", "agents"];
+/**
+ * The orphan detector (WO-F06). Correlate every genome file under `standards/`, `domain_types/`,
+ * `agents/` with the `kind:"genome_mutation"` seals in the (git-tracked) genome ledger, and return
+ * the files that have NONE — the orphans this module's header calls "outside the substrate": a
+ * hand-edited file with no ledger entry has no identity.
+ *
+ * A file's slug is its basename without `.json`. It is considered sealed when some seal's
+ * `subject_slug` equals that slug, OR equals that slug carrying a version tag (`<slug>@v2` — the
+ * identity `type_extend`/`agent_evolve` record while still materialising `<slug>.json`, so the
+ * versioned seal must not read as leaving the base file an orphan). Returns genome-relative paths
+ * (`standards/orphan.json`) so a caller can name the offending file to CI.
+ *
+ * PURE over its two inputs: it makes no decision about WHETHER orphans should fail a run — that
+ * policy (only enforced once the genome ledger actually holds seals) lives at the `coltrane validate`
+ * call site, so this stays a reusable "which files lack a seal" query.
+ */
+export function detectGenomeOrphans(genome_dir, ledger) {
+    const sealed = new Set();
+    for (const e of ledger.query({ kind: "genome_mutation" })) {
+        const slug = e.subject_slug;
+        // Fold `<slug>@v<n>` back to `<slug>`: the versioned identity seals the same flat file.
+        if (typeof slug === "string")
+            sealed.add(slug.split("@")[0]);
+    }
+    const orphans = [];
+    for (const subdir of ORPHAN_SCAN_SUBDIRS) {
+        const dir = join(genome_dir, subdir);
+        if (!existsSync(dir))
+            continue;
+        for (const entry of readdirSync(dir, { withFileTypes: true })) {
+            if (!entry.isFile() || !entry.name.endsWith(".json"))
+                continue;
+            const slug = entry.name.slice(0, -".json".length);
+            if (!sealed.has(slug))
+                orphans.push(`${subdir}/${entry.name}`);
+        }
+    }
+    return orphans;
+}
 //# sourceMappingURL=genome_writer.js.map

package/dist/src/genome_writer.js.map

@@ -1 +1 @@
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package/dist/src/ledger.d.ts

@@ -200,6 +200,22 @@ export declare const isGovernance: (e: LedgerEntry) => e is GovernanceLedgerEntr
  * `.gitignore` already carries `.coltrane/`.
  */
 export declare function defaultLedgerPath(root?: string): string;
+/**
+ * Resolve the GENOME ledger file — where `kind:"genome_mutation"` seals live. `COLTRANE_GENOME_LEDGER_PATH`
+ * wins; otherwise `<root>/genome/ledger.jsonl`.
+ *
+ * Deliberately OUTSIDE `.coltrane/` (WO-F06). `.gitignore` excludes all of `.coltrane/`, so a genome
+ * repo that kept its seals there shipped every `standards/`, `domain_types/`, `agents/` file WITHOUT
+ * the seal that gives it identity — on a fresh clone every genome object was an orphan by the engine's
+ * own invariant (`src/genome_writer.ts:1-6`). `genome/ledger.jsonl` is a git-TRACKED sibling of the
+ * genome files, so provenance travels WITH the repo and no `.gitignore` edit is required.
+ *
+ * A SEPARATE override from `COLTRANE_LEDGER_PATH` (which governs the gig ledger, and only it): the two
+ * ledgers are now distinct stores with distinct lifecycles — one ships, one is machine-local — so a
+ * caller relocating one must not drag the other with it. `defaultLedgerPath` is unchanged and its
+ * override is untouched.
+ */
+export declare function defaultGenomeLedgerPath(root?: string): string;
 /**
  * THE shared validator. Both implementations call this; the duplicated guard triplet it
  * replaces (v1 `src/ledger.ts:56-58` and `:102-104`) is how the MemoryLedger/FileLedger
@@ -247,4 +263,49 @@ export declare class MemoryLedger implements Ledger {
      *  `path` is empty because there is no file — not because we failed to find one. */
     integrity(): LedgerIntegrityReport;
 }
+/**
+ * Two backing ledgers behind ONE `Ledger` handle, routed by `entry.kind` (WO-F06).
+ *
+ *   kind:"genome_mutation" → genomeLedger  (git-TRACKED `genome/ledger.jsonl`; ships with the repo)
+ *   kind:"gig" | "governance" → gigLedger  (gitignored `.coltrane/ledger.jsonl`; machine-local)
+ *
+ * WHY a wrapper rather than threading two ledgers to every append site, or a `kind` parameter on
+ * `Ledger.append`: `append` is reached from ~a dozen seal and seal-adjacent sites across
+ * `src/genome_writer.ts` and `src/server.ts`, several of them un-audited. A per-call-site split has
+ * unbounded blast radius, and a `kind` parameter would break the interface contract for every caller.
+ * This confines the routing decision to the ONE fact that already discriminates the entry — its own
+ * `kind` — and leaves the interface, every append() caller, and every reader untouched.
+ *
+ * `governance` rides with `gig` deliberately: WO-F06 tracks only `genome_mutation`, and keeping
+ * governance on the runtime side preserves the invariant "only genome_mutation travels with the
+ * genome" and keeps governance rows out of the orphan-detector's seal source. Reversible if
+ * governance provenance is later required to ship.
+ *
+ * Reads UNION both sources so `genome_reload` and every existing consumer still see one ledger. A
+ * kind-filtered read short-circuits to the single side that can hold that kind, so a gig query never
+ * parses the genome file (and vice versa) — the union is paid for only by an unfiltered read.
+ */
+export declare class SplitLedger implements Ledger {
+    private readonly genomeLedger;
+    private readonly gigLedger;
+    constructor(genomeLedger: Ledger, gigLedger: Ledger);
+    append(entry: LedgerEntry): void;
+    query(filter: GigOnlyQuery): GigLedgerEntry[];
+    query(filter: LedgerQuery & {
+        kind: "genome_mutation";
+    }): GenomeMutationLedgerEntry[];
+    query(filter: LedgerQuery & {
+        kind: "governance";
+    }): GovernanceLedgerEntry[];
+    query(filter?: LedgerQuery): LedgerEntry[];
+    count(filter?: LedgerQuery): number;
+    /** Whole only if BOTH backing files are whole; the report unions their entry counts and any torn
+     *  lines, so an operator asking one handle "is my audit trail intact" learns the truth about the
+     *  split store, not half of it. `path`, by its `LedgerIntegrityReport.path: string` contract
+     *  (see interface above), is a SINGLE ledger path and reports the gig ledger's — the report lands
+     *  verbatim in an MCP system_health response an operator reads, and a joined string is not a path.
+     *  The genome ledger's path is deliberately NOT concatenated in; a caller needing it reads the
+     *  genome-side handle directly rather than parsing it back out of this field. */
+    integrity(): LedgerIntegrityReport;
+}
 export {};

package/dist/src/ledger.js

@@ -26,6 +26,27 @@ export function defaultLedgerPath(root) {
         return override;
     return join(root ?? process.cwd(), ".coltrane", "ledger.jsonl");
 }
+/**
+ * Resolve the GENOME ledger file — where `kind:"genome_mutation"` seals live. `COLTRANE_GENOME_LEDGER_PATH`
+ * wins; otherwise `<root>/genome/ledger.jsonl`.
+ *
+ * Deliberately OUTSIDE `.coltrane/` (WO-F06). `.gitignore` excludes all of `.coltrane/`, so a genome
+ * repo that kept its seals there shipped every `standards/`, `domain_types/`, `agents/` file WITHOUT
+ * the seal that gives it identity — on a fresh clone every genome object was an orphan by the engine's
+ * own invariant (`src/genome_writer.ts:1-6`). `genome/ledger.jsonl` is a git-TRACKED sibling of the
+ * genome files, so provenance travels WITH the repo and no `.gitignore` edit is required.
+ *
+ * A SEPARATE override from `COLTRANE_LEDGER_PATH` (which governs the gig ledger, and only it): the two
+ * ledgers are now distinct stores with distinct lifecycles — one ships, one is machine-local — so a
+ * caller relocating one must not drag the other with it. `defaultLedgerPath` is unchanged and its
+ * override is untouched.
+ */
+export function defaultGenomeLedgerPath(root) {
+    const override = process.env["COLTRANE_GENOME_LEDGER_PATH"];
+    if (override && override.length > 0)
+        return override;
+    return join(root ?? process.cwd(), "genome", "ledger.jsonl");
+}
 function isNonEmptyString(v) {
     return typeof v === "string" && v.length > 0;
 }
@@ -307,4 +328,74 @@ export class MemoryLedger {
         return { ok: true, path: "", entries: this.entries.length, corrupt: [] };
     }
 }
+/**
+ * Two backing ledgers behind ONE `Ledger` handle, routed by `entry.kind` (WO-F06).
+ *
+ *   kind:"genome_mutation" → genomeLedger  (git-TRACKED `genome/ledger.jsonl`; ships with the repo)
+ *   kind:"gig" | "governance" → gigLedger  (gitignored `.coltrane/ledger.jsonl`; machine-local)
+ *
+ * WHY a wrapper rather than threading two ledgers to every append site, or a `kind` parameter on
+ * `Ledger.append`: `append` is reached from ~a dozen seal and seal-adjacent sites across
+ * `src/genome_writer.ts` and `src/server.ts`, several of them un-audited. A per-call-site split has
+ * unbounded blast radius, and a `kind` parameter would break the interface contract for every caller.
+ * This confines the routing decision to the ONE fact that already discriminates the entry — its own
+ * `kind` — and leaves the interface, every append() caller, and every reader untouched.
+ *
+ * `governance` rides with `gig` deliberately: WO-F06 tracks only `genome_mutation`, and keeping
+ * governance on the runtime side preserves the invariant "only genome_mutation travels with the
+ * genome" and keeps governance rows out of the orphan-detector's seal source. Reversible if
+ * governance provenance is later required to ship.
+ *
+ * Reads UNION both sources so `genome_reload` and every existing consumer still see one ledger. A
+ * kind-filtered read short-circuits to the single side that can hold that kind, so a gig query never
+ * parses the genome file (and vice versa) — the union is paid for only by an unfiltered read.
+ */
+export class SplitLedger {
+    genomeLedger;
+    gigLedger;
+    constructor(genomeLedger, gigLedger) {
+        this.genomeLedger = genomeLedger;
+        this.gigLedger = gigLedger;
+        // Bound like its siblings: `deps.ledger` is a service handle that gets passed around and
+        // destructured, never used as a prototype (see the FileLedger constructor note).
+        this.append = this.append.bind(this);
+        this.query = this.query.bind(this);
+        this.count = this.count.bind(this);
+        this.integrity = this.integrity.bind(this);
+    }
+    append(entry) {
+        // Validation still happens in each backing ledger's append(); routing is the only decision here.
+        if (entry.kind === "genome_mutation")
+            this.genomeLedger.append(entry);
+        else
+            this.gigLedger.append(entry);
+    }
+    query(filter = {}) {
+        if (filter.kind === "genome_mutation")
+            return this.genomeLedger.query(filter);
+        if (filter.kind === "gig" || filter.kind === "governance")
+            return this.gigLedger.query(filter);
+        return [...this.genomeLedger.query(filter), ...this.gigLedger.query(filter)];
+    }
+    count(filter = {}) {
+        return this.query(filter).length;
+    }
+    /** Whole only if BOTH backing files are whole; the report unions their entry counts and any torn
+     *  lines, so an operator asking one handle "is my audit trail intact" learns the truth about the
+     *  split store, not half of it. `path`, by its `LedgerIntegrityReport.path: string` contract
+     *  (see interface above), is a SINGLE ledger path and reports the gig ledger's — the report lands
+     *  verbatim in an MCP system_health response an operator reads, and a joined string is not a path.
+     *  The genome ledger's path is deliberately NOT concatenated in; a caller needing it reads the
+     *  genome-side handle directly rather than parsing it back out of this field. */
+    integrity() {
+        const g = this.genomeLedger.integrity();
+        const r = this.gigLedger.integrity();
+        return {
+            ok: g.ok && r.ok,
+            path: r.path,
+            entries: g.entries + r.entries,
+            corrupt: [...g.corrupt, ...r.corrupt],
+        };
+    }
+}
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