@egentica/codemap 0.1.5

package/dist/mcp/operations/help.js

@@ -0,0 +1,322 @@
+"use strict";
+/**
+ * Help system for CodeMap - provides contextual documentation for agents.
+ *
+ * This tool reads markdown help files from the HelpRegistry and returns
+ * formatted help content to guide agents in using CodeMap effectively.
+ *
+ * Supports both core help topics and plugin-registered topics.
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.registerCoreHelpTopics = registerCoreHelpTopics;
+exports.getHelp = getHelp;
+const fs = __importStar(require("fs/promises"));
+const path = __importStar(require("path"));
+// ── Core Help Topics ─────────────────────────────────────────────────────────
+/**
+ * Register core help topics with the HelpRegistry.
+ * Called during CodeMap initialization to register built-in help content.
+ *
+ * @param registry - HelpRegistry instance
+ * @param docsPath - Optional custom path to docs/help directory
+ */
+async function registerCoreHelpTopics(registry, docsPath) {
+    const helpDir = docsPath || path.join(__dirname, '../../../docs/help');
+    const coreTopics = [
+        {
+            id: 'getting-started',
+            title: 'Getting Started with CodeMap',
+            description: 'Introduction to CodeMap, first steps, core concepts, and basic workflows.',
+            tags: ['core', 'beginner', 'setup']
+        },
+        {
+            id: 'tool-reference',
+            title: 'Complete Tool Reference',
+            description: 'Comprehensive reference for all 52 CodeMap tools organized by category.',
+            tags: ['core', 'reference', 'tools', 'commands']
+        },
+        {
+            id: 'search-patterns',
+            title: 'Search Patterns',
+            description: 'Complete guide to searching code effectively with different search modes.',
+            tags: ['core', 'search', 'query']
+        },
+        {
+            id: 'file-operations',
+            title: 'File Operations',
+            description: 'Reading and editing files with CodeMap, including best practices.',
+            tags: ['core', 'files', 'editing']
+        },
+        {
+            id: 'dependencies',
+            title: 'Dependency Analysis',
+            description: 'Understanding and analyzing code dependencies and import relationships.',
+            tags: ['core', 'graph', 'dependencies']
+        },
+        {
+            id: 'annotations',
+            title: 'Annotations Guide',
+            description: 'Using @codemap annotations for metadata and documentation.',
+            tags: ['core', 'annotations', 'metadata']
+        },
+        {
+            id: 'best-practices',
+            title: 'Best Practices',
+            description: 'Recommended patterns and workflows for using CodeMap effectively.',
+            tags: ['core', 'workflow', 'tips']
+        },
+        {
+            id: 'groups',
+            title: 'Code Groups',
+            description: 'Organizing code with persistent groups - categorize files, directories, and symbols.',
+            tags: ['core', 'groups', 'organization']
+        },
+        {
+            id: 'session-tracking',
+            title: 'Session Tracking',
+            description: 'Session tracking system - automatically track file operations, manage checklists, and maintain session continuity.',
+            tags: ['core', 'session', 'workflow', 'tracking']
+        },
+        {
+            id: 'checklist-management',
+            title: 'Checklist Management',
+            description: 'Managing workflow checklists at session start and close boundaries.',
+            tags: ['core', 'checklist', 'workflow', 'session']
+        },
+        {
+            id: 'enhanced-read',
+            title: 'Enhanced File Reading',
+            description: 'Advanced file reading with pagination, group context, and dependency information.',
+            tags: ['core', 'files', 'reading', 'context']
+        },
+        {
+            id: 'labels',
+            title: 'Labels System',
+            description: 'Visual tagging system for files, directories, and symbols with emoji + name format.',
+            tags: ['core', 'labels', 'tagging', 'organization']
+        },
+        {
+            id: 'backups',
+            title: 'Backup System',
+            description: 'Hybrid backup strategy for persistent storage files - daily and turn-based backups with restore capability.',
+            tags: ['core', 'backup', 'restore', 'recovery']
+        },
+        // Tool category topics
+        {
+            id: 'search-tools',
+            title: 'Search Tools',
+            description: 'Complete reference for 6 search and discovery tools: search, search-in-files, search-annotations, search-elements, find-by-name, find-relevant.',
+            tags: ['tools', 'search', 'discovery', 'reference']
+        },
+        {
+            id: 'groups-tools',
+            title: 'Code Groups Tools',
+            description: 'Complete reference for 3 code grouping tools: group-add, group-notate, group-search.',
+            tags: ['tools', 'groups', 'organization', 'reference']
+        },
+        {
+            id: 'graph-tools',
+            title: 'Graph & Dependencies Tools',
+            description: 'Complete reference for 4 dependency analysis tools: get-dependencies, get-related, impact-analysis, traverse.',
+            tags: ['tools', 'graph', 'dependencies', 'reference']
+        },
+        {
+            id: 'annotations-tools',
+            title: 'Annotations Tools',
+            description: 'Complete reference for 4 annotation tools: add-annotation, edit-annotation, remove-annotation, search-annotations.',
+            tags: ['tools', 'annotations', 'metadata', 'reference']
+        },
+        {
+            id: 'backup-tools',
+            title: 'Backup & Restore Tools',
+            description: 'Complete reference for 2 backup tools: backup-list, backup-restore.',
+            tags: ['tools', 'backup', 'restore', 'reference']
+        },
+        {
+            id: 'checklist-tools',
+            title: 'Workflow Checklists Tools',
+            description: 'Complete reference for 3 checklist tools: checklist-list, checklist-add-item, checklist-remove-item.',
+            tags: ['tools', 'checklist', 'workflow', 'reference']
+        },
+        {
+            id: 'labels-tools',
+            title: 'Labels Tools',
+            description: 'Complete reference for 8 label tagging tools: label-create, label-list, label-edit, label-delete, label-assign, label-unassign, label-migrate, label-search.',
+            tags: ['tools', 'labels', 'tagging', 'reference']
+        },
+        {
+            id: 'session-tools',
+            title: 'Session Management Tools',
+            description: 'Complete reference for 11 session tools: orient, session-start, session-list, session-read, close, next-session, execute-shell, scan, reindex, stats, help, audit.',
+            tags: ['tools', 'session', 'workflow', 'reference']
+        },
+        {
+            id: 'io-tools',
+            title: 'File Operations Tools',
+            description: 'Complete reference for 13 file I/O tools: read-file, read-multiple, write, create, append, replace-text, replace-many, delete, rename, list, get-symbols, get-annotations, peek.',
+            tags: ['tools', 'io', 'files', 'reference']
+        }
+    ];
+    for (const topic of coreTopics) {
+        const filePath = path.join(helpDir, `${topic.id}.md`);
+        registry.registerTopic({
+            id: topic.id,
+            title: topic.title,
+            source: 'core',
+            filePath,
+            description: topic.description,
+            tags: topic.tags
+        });
+    }
+}
+// ── Envelope helpers ─────────────────────────────────────────────────────────
+function okEnvelope(data) {
+    return { success: true, data };
+}
+function errorEnvelope(error) {
+    return { success: false, error };
+}
+/**
+ * Get help documentation for a specific topic.
+ *
+ * @param topic - Help topic to lookup (empty string or 'index' for list of topics)
+ * @param registry - HelpRegistry instance
+ * @returns Help content as markdown
+ */
+async function getHelp(topic, registry) {
+    // Empty topic or 'index' - show list of all topics
+    if (!topic || topic === 'index' || topic === '') {
+        const allTopics = registry.getAllTopicMetadata();
+        // Group topics by source
+        const coreTopics = allTopics.filter(t => t.source === 'core');
+        const pluginTopics = allTopics.filter(t => t.source !== 'core');
+        // Build index content dynamically
+        let indexContent = '# CodeMap Help Topics\n\n';
+        if (coreTopics.length > 0) {
+            indexContent += '## Core Topics\n\n';
+            for (const topic of coreTopics) {
+                indexContent += `### ${topic.id}\n`;
+                indexContent += `**${topic.title}**\n\n`;
+                if (topic.description) {
+                    indexContent += `${topic.description}\n\n`;
+                }
+                if (topic.tags && topic.tags.length > 0) {
+                    indexContent += `*Tags: ${topic.tags.join(', ')}*\n\n`;
+                }
+            }
+        }
+        if (pluginTopics.length > 0) {
+            indexContent += '## Plugin Topics\n\n';
+            for (const topic of pluginTopics) {
+                indexContent += `### ${topic.id}\n`;
+                indexContent += `**${topic.title}** *(from ${topic.source})*\n\n`;
+                if (topic.description) {
+                    indexContent += `${topic.description}\n\n`;
+                }
+                if (topic.tags && topic.tags.length > 0) {
+                    indexContent += `*Tags: ${topic.tags.join(', ')}*\n\n`;
+                }
+            }
+        }
+        indexContent += '\n## How to Use Help\n\n';
+        indexContent += '### View a specific topic:\n';
+        indexContent += '```\n';
+        indexContent += 'codemap_help(topic: "search-patterns")\n';
+        indexContent += '```\n\n';
+        indexContent += '### List all topics:\n';
+        indexContent += '```\n';
+        indexContent += 'codemap_help(topic: "")\n';
+        indexContent += '```\n\n';
+        return okEnvelope({
+            topic: 'index',
+            content: indexContent,
+            availableTopics: registry.getAllTopicIds(),
+            topicCount: {
+                total: allTopics.length,
+                core: coreTopics.length,
+                plugin: pluginTopics.length
+            }
+        });
+    }
+    // Check if topic exists
+    if (!registry.hasTopic(topic)) {
+        const availableTopics = registry.getAllTopicIds();
+        return errorEnvelope({
+            code: 'TOPIC_NOT_FOUND',
+            message: `Help topic "${topic}" not found. Available topics: ${availableTopics.join(', ')}`,
+            availableTopics,
+            requestedTopic: topic,
+            suggestion: 'Use codemap_help() or codemap_help(topic: "index") to see all available topics'
+        });
+    }
+    // Load the requested help topic
+    const helpTopic = registry.getTopic(topic);
+    let content;
+    try {
+        if (helpTopic.filePath) {
+            // Load from file
+            content = await fs.readFile(helpTopic.filePath, 'utf-8');
+        }
+        else if (helpTopic.content) {
+            // Use inline content
+            content = helpTopic.content;
+        }
+        else {
+            // This should never happen due to validation in registerTopic
+            return errorEnvelope({
+                code: 'INVALID_TOPIC',
+                message: `Help topic "${topic}" has neither filePath nor content`
+            });
+        }
+        return okEnvelope({
+            topic,
+            title: helpTopic.title,
+            source: helpTopic.source,
+            tags: helpTopic.tags,
+            content,
+            availableTopics: registry.getAllTopicIds()
+        });
+    }
+    catch (error) {
+        return errorEnvelope({
+            code: 'HELP_FILE_NOT_FOUND',
+            message: `Help file for topic "${topic}" could not be loaded`,
+            filePath: helpTopic.filePath,
+            error: error instanceof Error ? error.message : String(error)
+        });
+    }
+}
+//# sourceMappingURL=help.js.map

package/dist/mcp/operations/help.js.map

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package/dist/mcp/operations/session.d.ts

@@ -0,0 +1,13 @@
+import type { CodeMap } from '../../core/CodeMap';
+interface OperationContext {
+    codemap: CodeMap;
+    rootPath: string;
+}
+type OperationHandler = (args: Record<string, unknown>, ctx: OperationContext) => Promise<unknown>;
+export declare const closeSession: OperationHandler;
+export declare const reindex: OperationHandler;
+export declare const audit: OperationHandler;
+export declare const executeShell: OperationHandler;
+export declare const nextSession: OperationHandler;
+export {};
+//# sourceMappingURL=session.d.ts.map

package/dist/mcp/operations/session.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"session.d.ts","sourceRoot":"","sources":["../../../src/mcp/operations/session.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAQlD,UAAU,gBAAgB;IACxB,OAAO,EAAE,OAAO,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED,KAAK,gBAAgB,GAAG,CAAC,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,GAAG,EAAE,gBAAgB,KAAK,OAAO,CAAC,OAAO,CAAC,CAAC;AAcnG,eAAO,MAAM,YAAY,EAAE,gBAgB1B,CAAC;AAIF,eAAO,MAAM,OAAO,EAAE,gBAuBrB,CAAC;AAIF,eAAO,MAAM,KAAK,EAAE,gBA4BnB,CAAC;AAIF,eAAO,MAAM,YAAY,EAAE,gBAuB1B,CAAC;AAIF,eAAO,MAAM,WAAW,EAAE,gBAkBzB,CAAC"}

package/dist/mcp/operations/session.js

@@ -0,0 +1,169 @@
+"use strict";
+// operations/session.ts
+// Session operations: close_session, reindex, audit, execute_shell, next_session
+// Follows Prime's operation handler pattern with okEnvelope/errorEnvelope
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.nextSession = exports.executeShell = exports.audit = exports.reindex = exports.closeSession = void 0;
+const child_process_1 = require("child_process");
+const util_1 = require("util");
+const nodefs = __importStar(require("fs/promises"));
+const path = __importStar(require("path"));
+const execAsync = (0, util_1.promisify)(child_process_1.exec);
+// ── Envelope helpers ─────────────────────────────────────────────────────────
+function okEnvelope(data) {
+    return { success: true, data };
+}
+function errorEnvelope(code, message) {
+    return { success: false, error: { code, message } };
+}
+// ── close_session ────────────────────────────────────────────────────────────
+const closeSession = async (_args, ctx) => {
+    try {
+        // Get stats from CodeMap (not QueryEngine)
+        const stats = ctx.codemap.getStats();
+        return okEnvelope({
+            message: 'Session closed',
+            stats: {
+                files: stats.files,
+                symbols: stats.symbols,
+                dependencies: stats.dependencies,
+            },
+        });
+    }
+    catch (err) {
+        return errorEnvelope('CLOSE_ERROR', err instanceof Error ? err.message : String(err));
+    }
+};
+exports.closeSession = closeSession;
+// ── reindex ──────────────────────────────────────────────────────────────────
+const reindex = async (_args, ctx) => {
+    try {
+        // Get stats before scan
+        const before = ctx.codemap.getStats();
+        // Use public scan() method
+        await ctx.codemap.scan();
+        // Get stats after scan
+        const after = ctx.codemap.getStats();
+        return okEnvelope({
+            message: 'Reindex complete',
+            before: { files: before.files, symbols: before.symbols },
+            after: { files: after.files, symbols: after.symbols },
+            changes: {
+                files: after.files - before.files,
+                symbols: after.symbols - before.symbols,
+            },
+        });
+    }
+    catch (err) {
+        return errorEnvelope('REINDEX_ERROR', err instanceof Error ? err.message : String(err));
+    }
+};
+exports.reindex = reindex;
+// ── audit ────────────────────────────────────────────────────────────────────
+const audit = async (_args, ctx) => {
+    try {
+        // Placeholder: would check architecture violations using annotations
+        const allFiles = ctx.codemap.query['graph'].getAllFiles();
+        const violations = [];
+        for (const file of allFiles) {
+            const annotations = file.categorizedAnnotations || [];
+            // Audit logic would go here
+            // For now, just report files with policy annotations
+            if (annotations.length > 0) {
+                const resolved = await ctx.codemap.resolver.resolve(file.relativePath);
+                violations.push({
+                    file: resolved.relativePath,
+                    message: `${annotations.length} annotations found`,
+                });
+            }
+        }
+        return okEnvelope({
+            violations,
+            violationCount: violations.length,
+            clean: violations.length === 0,
+        });
+    }
+    catch (err) {
+        return errorEnvelope('AUDIT_ERROR', err instanceof Error ? err.message : String(err));
+    }
+};
+exports.audit = audit;
+// ── execute_shell ────────────────────────────────────────────────────────────
+const executeShell = async (args, ctx) => {
+    const cmd = args.cmd ? String(args.cmd) : '';
+    if (!cmd)
+        return errorEnvelope('MISSING_ARGS', 'cmd is required');
+    const timeout = args.timeout ? Number(args.timeout) : 30000;
+    const cwd = args.cwd ? String(args.cwd) : ctx.rootPath;
+    try {
+        const { stdout, stderr } = await execAsync(cmd, { cwd, timeout });
+        return okEnvelope({
+            stdout,
+            stderr,
+            exitCode: 0,
+        });
+    }
+    catch (err) {
+        return okEnvelope({
+            stdout: err.stdout || '',
+            stderr: err.stderr || '',
+            exitCode: err.code || 1,
+            error: err.message,
+        });
+    }
+};
+exports.executeShell = executeShell;
+// ── next_session ─────────────────────────────────────────────────────────────
+const nextSession = async (args, ctx) => {
+    const text = args.text ? String(args.text) : '';
+    if (!text)
+        return errorEnvelope('MISSING_ARGS', 'text is required');
+    try {
+        const sessionDir = path.join(ctx.rootPath, '.codemap', 'sessions');
+        await nodefs.mkdir(sessionDir, { recursive: true });
+        const nextSessionPath = path.join(sessionDir, 'NEXT_SESSION.md');
+        await nodefs.writeFile(nextSessionPath, text, 'utf-8');
+        return okEnvelope({
+            written: nextSessionPath,
+            bytes: text.length,
+        });
+    }
+    catch (err) {
+        return errorEnvelope('FS_ERROR', err instanceof Error ? err.message : String(err));
+    }
+};
+exports.nextSession = nextSession;
+//# sourceMappingURL=session.js.map

package/dist/mcp/operations/session.js.map

@@ -0,0 +1 @@
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package/dist/mcp/operations/writes.d.ts

@@ -0,0 +1,14 @@
+import type { CodeMap } from '../../core/CodeMap';
+interface OperationContext {
+    codemap: CodeMap;
+    rootPath: string;
+}
+type OperationHandler = (args: Record<string, unknown>, ctx: OperationContext) => Promise<unknown>;
+export declare const createFile: OperationHandler;
+export declare const appendFile: OperationHandler;
+export declare const replaceText: OperationHandler;
+export declare const replaceMany: OperationHandler;
+export declare const deleteFile: OperationHandler;
+export declare const renameFile: OperationHandler;
+export {};
+//# sourceMappingURL=writes.d.ts.map

package/dist/mcp/operations/writes.d.ts.map

@@ -0,0 +1 @@
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