@eclipse-lyra/extension-notebook 0.7.33 → 0.7.38

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Files changed (22) hide show
  1. package/dist/index.d.ts +2 -1
  2. package/dist/index.d.ts.map +1 -1
  3. package/dist/index.js +7 -2
  4. package/dist/index.js.map +1 -1
  5. package/dist/javascript-kernel.d.ts +3 -0
  6. package/dist/javascript-kernel.d.ts.map +1 -0
  7. package/dist/{notebook-extension-CepcmisO.js → notebook-extension-DNAFwHgc.js} +47 -10
  8. package/dist/notebook-extension-DNAFwHgc.js.map +1 -0
  9. package/dist/notebook-extension.d.ts.map +1 -1
  10. package/dist/notebook-kernel-api--RBL5TaE.js +11 -0
  11. package/dist/notebook-kernel-api--RBL5TaE.js.map +1 -0
  12. package/dist/notebook-kernel-api.d.ts +34 -0
  13. package/dist/notebook-kernel-api.d.ts.map +1 -0
  14. package/dist/{notebook-runtime-yB3_aIh0.js → notebook-runtime-DFffRmNN.js} +267 -205
  15. package/dist/notebook-runtime-DFffRmNN.js.map +1 -0
  16. package/dist/notebook-runtime.d.ts +13 -7
  17. package/dist/notebook-runtime.d.ts.map +1 -1
  18. package/dist/notebook-types.d.ts +1 -0
  19. package/dist/notebook-types.d.ts.map +1 -1
  20. package/package.json +1 -2
  21. package/dist/notebook-extension-CepcmisO.js.map +0 -1
  22. package/dist/notebook-runtime-yB3_aIh0.js.map +0 -1
package/dist/notebook-runtime-DFffRmNN.js.map ADDED
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+ {"version":3,"file":"notebook-runtime-DFffRmNN.js","sources":["../src/notebook-runtime.ts"],"sourcesContent":["import { css, html } from \"lit\";\nimport { customElement, property, state } from \"lit/decorators.js\";\nimport { Ref, createRef, ref } from \"lit/directives/ref.js\";\nimport { repeat } from \"lit/directives/repeat.js\";\nimport { styleMap } from \"lit/directives/style-map.js\";\nimport { unsafeHTML } from \"lit/directives/unsafe-html.js\";\nimport { marked } from \"marked\";\nimport * as monaco from 'monaco-editor';\nimport monacoStyles from \"monaco-editor/min/vs/editor/editor.main.css?raw\";\nimport type { EditorInput } from \"@eclipse-lyra/core\";\nimport { File, createLogger, LyraPart, contributionRegistry, subscribe, unsubscribe, TOPIC_CONTRIBUTEIONS_CHANGED } from \"@eclipse-lyra/core\";\nimport type { NotebookCell, NotebookData, NotebookEditorLike } from \"./notebook-types\";\nimport type { NotebookKernel, NotebookKernelContribution } from \"./notebook-kernel-api\";\nimport { TARGET_NOTEBOOK_KERNELS } from \"./notebook-kernel-api\";\n\nconst logger = createLogger('NotebookRuntime');\n\n@customElement('lyra-notebook-editor')\nexport class LyraNotebookEditor extends LyraPart implements NotebookEditorLike {\n @property({ attribute: false })\n public input?: EditorInput;\n\n @state()\n public notebook?: NotebookData;\n\n @state()\n private cellOutputs: Map<number, any> = new Map();\n\n @state()\n private executingCells: Set<number> = new Set();\n\n @state()\n private availableKernels: NotebookKernelContribution[] = [];\n\n @state()\n private selectedKernelId: string | null = null;\n\n @state()\n private kernel: NotebookKernel | null = null;\n\n @state()\n private kernelConnected: boolean = false;\n\n @state()\n private kernelConnecting: boolean = false;\n\n @state()\n private kernelVersion: string | undefined = undefined;\n\n private unsubscribeContributionsToken?: string;\n\n @state()\n private editingMarkdownCells: Set<number> = new Set();\n\n @state()\n private executionCounter: number = 0;\n\n @state()\n private isRunningAll: boolean = false;\n\n @state()\n private highlightedCellIndex: number = -1;\n\n public focusedCellIndex: number = -1;\n private cancelRunAll: boolean = false;\n\n private monacoEditors: Map<number, monaco.editor.IStandaloneCodeEditor> = new Map();\n private cellRefs: Map<number, Ref<HTMLElement>> = new Map();\n private themeObserver?: MutationObserver;\n\n protected doClose() {\n this.input = undefined;\n this.notebook = undefined;\n this.cellOutputs.clear();\n this.executingCells.clear();\n\n // Dispose Monaco editors\n this.monacoEditors.forEach(editor => editor.dispose());\n this.monacoEditors.clear();\n this.cellRefs.clear();\n this.focusedCellIndex = -1;\n\n if (this.themeObserver) {\n this.themeObserver.disconnect();\n this.themeObserver = undefined;\n }\n\n if (this.unsubscribeContributionsToken) {\n unsubscribe(this.unsubscribeContributionsToken);\n this.unsubscribeContributionsToken = undefined;\n }\n\n if (this.kernel?.close) {\n void Promise.resolve(this.kernel.close());\n }\n this.kernel = null;\n this.kernelConnected = false;\n this.kernelVersion = undefined;\n }\n\n async save() {\n if (!this.notebook || !this.input) return;\n\n try {\n // Update cell contents from Monaco editors before saving\n this.saveEditorContents();\n\n this.notebook.cells.forEach((cell, index) => {\n if (cell.cell_type === 'code') {\n const output = this.cellOutputs.get(index);\n cell.outputs = output ? this.convertOutputToJupyter(output, cell.execution_count) : [];\n }\n });\n\n // Serialize notebook to JSON\n const notebookJson = JSON.stringify(this.notebook, null, 2);\n\n // Save to file\n const file: File = this.input.data;\n await file.saveContents(notebookJson);\n\n // Mark as not dirty\n this.markDirty(false);\n } catch (error) {\n console.error(\"Failed to save notebook:\", error);\n throw error;\n }\n }\n\n protected doBeforeUI() {\n // Start loading notebook asynchronously\n this.loadNotebook();\n }\n\n private async onKernelDropdownSelect(e: CustomEvent<{ item?: { value?: string } }>): Promise<void> {\n const value = e.detail?.item?.value ?? '';\n const nextId = value || null;\n if (this.selectedKernelId === nextId) return;\n if (this.kernel?.close) void Promise.resolve(this.kernel.close());\n this.kernel = null;\n this.kernelConnected = false;\n this.kernelVersion = undefined;\n this.selectedKernelId = nextId;\n if (this.notebook) {\n if (!this.notebook.metadata) this.notebook.metadata = {};\n this.notebook.metadata.kernel = nextId ?? undefined;\n }\n this.cellOutputs.clear();\n this.executionCounter = 0;\n this.notebook?.cells?.forEach((cell) => {\n if (cell.cell_type === 'code') {\n cell.execution_count = null;\n cell.outputs = [];\n }\n });\n this.resetCellState();\n await this.ensureKernelLoaded();\n this.requestUpdate();\n this.updateToolbar();\n }\n\n protected renderToolbar() {\n const kernels = this.availableKernels;\n const hasKernels = kernels.length > 0;\n const currentLabel = this.selectedKernelId\n ? kernels.find((c) => c.id === this.selectedKernelId)?.label ?? this.selectedKernelId\n : 'Select kernel';\n\n const connectionTitle = this.kernelConnecting\n ? 'Connecting...'\n : this.kernelConnected\n ? 'Kernel connected'\n : 'Kernel disconnected';\n const connectionText = this.kernelConnecting\n ? 'Connecting...'\n : this.kernelConnected\n ? (this.kernelVersion ?? 'Connected')\n : 'Not connected';\n const iconColor = this.kernelConnected\n ? 'var(--wa-color-green-40)'\n : this.kernelConnecting\n ? 'var(--wa-color-warning-500)'\n : 'var(--wa-color-red-40)';\n\n const runAllButton = this.isRunningAll ? html`\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.cancelAllCells()} title=\"Cancel running all cells\">\n <wa-icon name=\"stop\" label=\"Stop\"></wa-icon>\n Cancel All\n </wa-button>\n ` : html`\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.runAllCells()} title=\"Run all code cells sequentially\">\n <wa-icon name=\"play\" label=\"Run\"></wa-icon>\n Run All\n </wa-button>\n `;\n\n return html`\n <wa-dropdown\n class=\"kernel-select\"\n placement=\"bottom-start\"\n distance=\"4\"\n size=\"small\"\n @wa-select=${(e: CustomEvent<{ item?: { value?: string } }>) => void this.onKernelDropdownSelect(e)}\n >\n <wa-button\n slot=\"trigger\"\n appearance=\"plain\"\n size=\"small\"\n with-caret\n title=\"Notebook kernel\"\n >\n ${currentLabel}\n </wa-button>\n ${kernels.map(\n (c) => html`\n <wa-dropdown-item\n value=${c.id}\n type=\"checkbox\"\n ?checked=${c.id === this.selectedKernelId}\n >\n ${c.label}\n </wa-dropdown-item>\n `\n )}\n </wa-dropdown>\n ${runAllButton}\n <wa-button\n size=\"small\"\n appearance=\"plain\"\n @click=${() => this.clearAllOutputs()}\n title=\"Clear all outputs and reset execution counter\"\n >\n <wa-icon name=\"eraser\" label=\"Clear\"></wa-icon>\n Clear Outputs\n </wa-button>\n ${this.kernel?.restart ? html`\n <wa-button\n size=\"small\"\n appearance=\"plain\"\n @click=${() => void this.restartKernel()}\n title=\"Restart kernel\"\n ?disabled=${!this.kernelConnected || this.kernelConnecting}\n >\n <wa-icon name=\"arrows-rotate\" label=\"Restart\"></wa-icon>\n Restart Kernel\n </wa-button>\n ` : ''}\n ${this.kernel?.openPackageManager ? html`\n <wa-button\n size=\"small\"\n appearance=\"plain\"\n @click=${() => this.openPackageManager()}\n title=\"Manage packages\"\n >\n <wa-icon name=\"box\" label=\"Packages\"></wa-icon>\n Packages\n </wa-button>\n ` : ''}\n ${this.kernel ? (this.kernel.connect ? html`\n <wa-button\n appearance=\"plain\"\n size=\"small\"\n style=\"display: flex; align-items: center; gap: 0.5rem;\"\n ?disabled=${this.kernelConnecting}\n @click=${() => void this.connectKernel()}\n title=${connectionTitle}\n >\n <wa-icon name=\"circle\" label=\"Kernel status\" style=${styleMap({ color: iconColor })}></wa-icon>\n ${connectionText}\n </wa-button>\n ` : html`\n <span style=\"display: flex; align-items: center; gap: 0.5rem;\" title=${connectionTitle}>\n <wa-icon name=\"circle\" label=\"Kernel status\" style=${styleMap({ color: iconColor })}></wa-icon>\n ${connectionText}\n </span>\n `) : ''}\n `;\n }\n\n private async connectKernel(): Promise<void> {\n if (this.kernelConnecting || !this.kernel?.connect) return;\n try {\n this.kernelConnecting = true;\n this.requestUpdate();\n this.updateToolbar();\n await this.kernel.connect({\n requiredPackages: this.notebook?.metadata?.required_packages,\n });\n this.kernelConnected = true;\n if (this.kernel.getVersion) this.kernelVersion = await this.kernel.getVersion();\n } catch (err) {\n logger.error('Failed to connect kernel', err);\n } finally {\n this.kernelConnecting = false;\n this.requestUpdate();\n this.updateToolbar();\n }\n }\n\n protected async doInitUI() {\n this.setupThemeObserver();\n this.unsubscribeContributionsToken = subscribe(TOPIC_CONTRIBUTEIONS_CHANGED, (event: { target?: string }) => {\n if (event?.target === TARGET_NOTEBOOK_KERNELS) {\n void this.refreshKernels();\n }\n });\n await this.refreshKernels();\n }\n\n private resolveDefaultKernelId(contributions: NotebookKernelContribution[]): string | null {\n if (!contributions.length) return null;\n const fromMeta = this.notebook?.metadata?.kernel;\n if (fromMeta && contributions.some((c) => c.id === fromMeta)) return fromMeta;\n const python = contributions.find((c) => c.id === 'python');\n if (python) return python.id;\n const js = contributions.find((c) => c.id === 'javascript');\n if (js) return js.id;\n return contributions[0].id;\n }\n\n private async refreshKernels(): Promise<void> {\n const contributions = contributionRegistry.getContributions<NotebookKernelContribution>(TARGET_NOTEBOOK_KERNELS);\n this.availableKernels = contributions;\n if (!this.selectedKernelId && contributions.length) {\n this.selectedKernelId = this.resolveDefaultKernelId(contributions);\n if (this.notebook && this.selectedKernelId) {\n if (!this.notebook.metadata) this.notebook.metadata = {};\n this.notebook.metadata.kernel = this.selectedKernelId;\n }\n }\n if (this.selectedKernelId && !contributions.some((c) => c.id === this.selectedKernelId)) {\n this.selectedKernelId = contributions.length ? contributions[0].id : null;\n }\n this.requestUpdate();\n await this.ensureKernelLoaded();\n this.updateToolbar();\n }\n\n private async ensureKernelLoaded(): Promise<void> {\n const id = this.selectedKernelId;\n if (!id || this.kernel?.id === id) return;\n if (this.kernel?.close) void Promise.resolve(this.kernel.close());\n this.kernel = null;\n this.kernelConnected = false;\n this.kernelVersion = undefined;\n const contribution = this.availableKernels.find((c) => c.id === id);\n if (!contribution) return;\n try {\n this.kernelConnecting = true;\n this.requestUpdate();\n this.updateToolbar();\n const k = await contribution.loadKernel();\n if (this.selectedKernelId !== id) return;\n this.kernel = k;\n if (k.connect) {\n await k.connect({\n requiredPackages: this.notebook?.metadata?.required_packages,\n });\n }\n this.kernelConnected = true;\n if (k.getVersion) {\n this.kernelVersion = await k.getVersion();\n }\n } catch (err) {\n logger.error('Failed to load kernel', id, err);\n } finally {\n this.kernelConnecting = false;\n this.requestUpdate();\n this.updateToolbar();\n }\n }\n\n private async loadNotebook() {\n const file: File = this.input!.data;\n const contents = await file.getContents();\n\n try {\n this.notebook = JSON.parse(contents as string);\n } catch (e) {\n console.error(\"Failed to parse notebook:\", e);\n this.notebook = {\n cells: [{\n cell_type: 'markdown',\n source: ['# Error\\nFailed to parse notebook file.']\n }]\n };\n }\n\n if (this.notebook?.metadata?.kernel) {\n this.selectedKernelId = this.notebook.metadata.kernel;\n }\n\n if (this.notebook?.cells) {\n const maxCount = this.notebook.cells\n .filter(cell => cell.cell_type === 'code')\n .map(cell => cell.execution_count ?? 0)\n .reduce((max, count) => Math.max(max, count), 0);\n this.executionCounter = maxCount;\n\n this.notebook.cells.forEach((cell, index) => {\n if (cell.cell_type === 'code' && cell.outputs && cell.outputs.length > 0) {\n const output = this.convertOutputFromJupyter(cell.outputs[0]);\n if (output) {\n this.cellOutputs.set(index, output);\n }\n }\n });\n }\n\n void this.refreshKernels();\n }\n\n private setupThemeObserver() {\n const rootElement = document.documentElement;\n let currentTheme = this.getMonacoTheme();\n\n this.themeObserver = new MutationObserver(() => {\n const newTheme = this.getMonacoTheme();\n // Only update if theme actually changed\n if (newTheme !== currentTheme) {\n currentTheme = newTheme;\n monaco.editor.setTheme(newTheme);\n }\n });\n\n this.themeObserver.observe(rootElement, {\n attributes: true,\n attributeFilter: ['class']\n });\n }\n\n private getCellSource(cell: NotebookCell): string {\n return Array.isArray(cell.source) ? cell.source.join('') : cell.source;\n }\n\n private convertOutputToJupyter(output: any, executionCount: number | null | undefined): any[] {\n if (output.type === 'execute_result') {\n const data: any = {};\n if (output.imageData) data['image/png'] = output.imageData;\n if (output.data) data['text/plain'] = output.data;\n return [{\n output_type: 'execute_result',\n data,\n execution_count: executionCount,\n metadata: {}\n }];\n } else if (output.type === 'error') {\n return [{\n output_type: 'error',\n ename: 'Error',\n evalue: output.data,\n traceback: [output.data]\n }];\n }\n return [];\n }\n\n private convertOutputFromJupyter(jupyterOutput: any): any | null {\n if (jupyterOutput.output_type === 'execute_result' && jupyterOutput.data) {\n return {\n type: 'execute_result',\n data: jupyterOutput.data['text/plain'] || '',\n imageData: jupyterOutput.data['image/png'] || undefined\n };\n } else if (jupyterOutput.output_type === 'error') {\n return {\n type: 'error',\n data: jupyterOutput.evalue || jupyterOutput.traceback?.join('\\n') || 'Unknown error'\n };\n }\n return null;\n }\n\n private renderHeaderActions(index: number, additionalButton?: any) {\n return html`\n <div class=\"cell-header-actions\">\n ${additionalButton || ''}\n ${additionalButton ? html`<span class=\"divider\"></span>` : ''}\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index, 'code')} title=\"Add code cell before\">\n <wa-icon name=\"plus\"></wa-icon>\n <wa-icon name=\"code\" label=\"Code\"></wa-icon>\n </wa-button>\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index, 'markdown')} title=\"Add markdown cell before\">\n <wa-icon name=\"plus\"></wa-icon>\n <wa-icon name=\"font\" label=\"Markdown\"></wa-icon>\n </wa-button>\n <span class=\"divider\"></span>\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.deleteCell(index)} title=\"Delete cell\" ?disabled=${this.notebook!.cells.length <= 1}>\n <wa-icon name=\"trash\" label=\"Delete cell\"></wa-icon>\n </wa-button>\n </div>\n `;\n }\n\n private renderFooterActions(index: number) {\n return html`\n <div class=\"cell-footer\">\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index + 1, 'code')} title=\"Add code cell after\">\n <wa-icon name=\"code\" label=\"Code\"></wa-icon>\n <wa-icon name=\"plus\"></wa-icon>\n </wa-button>\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index + 1, 'markdown')} title=\"Add markdown cell after\">\n <wa-icon name=\"font\" label=\"Markdown\"></wa-icon>\n <wa-icon name=\"plus\"></wa-icon>\n </wa-button>\n </div>\n `;\n }\n\n // Helper to convert string to Jupyter source format\n private stringToSourceArray(content: string): string[] {\n if (!content) return [''];\n const lines = content.split('\\n').map(line => line + '\\n');\n // Remove trailing newline from last line\n if (lines.length > 0) {\n lines[lines.length - 1] = lines[lines.length - 1].replace(/\\n$/, '');\n }\n return lines;\n }\n\n // Helper to create a new cell\n private createCell(cellType: 'code' | 'markdown'): NotebookCell {\n const newCell: NotebookCell = {\n cell_type: cellType,\n source: [''],\n metadata: {}\n };\n\n if (cellType === 'code') {\n newCell.execution_count = null;\n newCell.outputs = [];\n }\n\n return newCell;\n }\n\n public async executeCell(cellIndex: number) {\n const cell = this.notebook!.cells[cellIndex];\n if (cell.cell_type !== 'code') return;\n\n this.executingCells.add(cellIndex);\n this.requestUpdate();\n\n try {\n await this.ensureKernelLoaded();\n const k = this.kernel;\n if (!k) {\n if (this.executingCells.has(cellIndex)) {\n this.cellOutputs.set(cellIndex, { type: 'error', data: 'No kernel selected' });\n }\n return;\n }\n\n const editor = this.monacoEditors.get(cellIndex);\n const code = editor ? editor.getValue() : this.getCellSource(cell);\n\n const result = await k.execute(code);\n\n if (result.error) {\n this.cellOutputs.set(cellIndex, { type: 'error', data: result.error });\n } else {\n this.cellOutputs.set(cellIndex, {\n type: 'execute_result',\n data: result.data,\n imageData: result.imageData,\n });\n }\n\n this.executionCounter++;\n cell.execution_count = this.executionCounter;\n this.markDirty(true);\n } catch (error) {\n if (this.executingCells.has(cellIndex)) {\n this.cellOutputs.set(cellIndex, {\n type: 'error',\n data: error instanceof Error ? error.message : String(error),\n });\n }\n } finally {\n this.executingCells.delete(cellIndex);\n this.requestUpdate();\n }\n }\n\n private cancelExecution(cellIndex: number) {\n if (this.kernel?.interrupt) {\n this.kernel.interrupt();\n } else {\n this.cellOutputs.set(cellIndex, {\n type: 'error',\n data: 'Cancellation not supported for this kernel',\n });\n this.executingCells.delete(cellIndex);\n this.requestUpdate();\n }\n }\n\n private clearAllOutputs() {\n // Clear all outputs\n this.cellOutputs.clear();\n\n // Reset execution counter\n this.executionCounter = 0;\n\n // Reset execution counts on all code cells\n if (this.notebook?.cells) {\n this.notebook.cells.forEach(cell => {\n if (cell.cell_type === 'code') {\n cell.execution_count = null;\n cell.outputs = [];\n }\n });\n }\n\n // Mark as dirty since we've modified the notebook\n this.markDirty(true);\n\n // Force re-render\n this.requestUpdate();\n }\n\n private async restartKernel() {\n if (!this.kernel?.restart || this.kernelConnecting) return;\n try {\n this.kernelConnecting = true;\n this.requestUpdate();\n this.updateToolbar();\n await this.kernel.restart();\n this.kernelConnected = true;\n if (this.kernel.getVersion) this.kernelVersion = await this.kernel.getVersion();\n } catch (error) {\n logger.error('Failed to restart kernel', error);\n } finally {\n this.kernelConnecting = false;\n this.requestUpdate();\n this.updateToolbar();\n }\n }\n\n private async runAllCells() {\n if (!this.notebook?.cells) return;\n\n this.isRunningAll = true;\n this.cancelRunAll = false;\n this.requestUpdate();\n\n try {\n // Execute all code cells sequentially\n for (let i = 0; i < this.notebook.cells.length; i++) {\n // Check if cancellation was requested\n if (this.cancelRunAll) {\n break;\n }\n\n const cell = this.notebook.cells[i];\n if (cell.cell_type === 'code') {\n await this.executeCell(i);\n }\n }\n } finally {\n this.isRunningAll = false;\n this.cancelRunAll = false;\n this.requestUpdate();\n }\n }\n\n private cancelAllCells() {\n this.cancelRunAll = true;\n this.kernel?.interrupt?.();\n }\n\n private toggleMarkdownEdit(index: number) {\n if (this.editingMarkdownCells.has(index)) {\n this.editingMarkdownCells.delete(index);\n } else {\n this.editingMarkdownCells.add(index);\n }\n this.requestUpdate();\n }\n\n private saveMarkdownEdit(index: number, event: Event) {\n const textarea = event.target as HTMLTextAreaElement;\n const newContent = textarea.value;\n\n // Update the cell source\n if (this.notebook && this.notebook.cells[index]) {\n const cell = this.notebook.cells[index];\n const oldContent = this.getCellSource(cell);\n\n cell.source = this.stringToSourceArray(newContent);\n\n // Mark dirty if content changed\n if (oldContent !== newContent) {\n this.markDirty(true);\n }\n }\n\n this.editingMarkdownCells.delete(index);\n this.requestUpdate();\n }\n\n private renderMarkdownCell(cell: NotebookCell, index: number) {\n const source = this.getCellSource(cell);\n const isEmpty = !source || source.trim() === '';\n const isEditing = this.editingMarkdownCells.has(index);\n\n if (isEditing) {\n const editButtons = html`\n <wa-button \n size=\"small\" \n appearance=\"plain\"\n @click=${(e: Event) => {\n const textarea = (e.target as HTMLElement).closest('.markdown-cell')?.querySelector('textarea');\n if (textarea) {\n this.saveMarkdownEdit(index, { target: textarea } as any);\n }\n }}\n title=\"Save changes\">\n <wa-icon name=\"check\" label=\"Save\"></wa-icon>\n </wa-button>\n <wa-button \n size=\"small\" \n appearance=\"plain\"\n @click=${() => this.toggleMarkdownEdit(index)}\n title=\"Cancel editing\">\n <wa-icon name=\"xmark\" label=\"Cancel\"></wa-icon>\n </wa-button>\n `;\n \n return html`\n <div class=\"cell-wrapper\">\n <wa-animation \n name=\"bounce\" \n duration=\"1000\" \n iterations=\"1\"\n ?play=${this.highlightedCellIndex === index}\n @wa-finish=${() => this.highlightedCellIndex = -1}>\n <div class=\"cell markdown-cell editing\">\n <div class=\"cell-header\">\n ${this.renderHeaderActions(index, editButtons)}\n <span class=\"cell-label\">Markdown</span>\n </div>\n <textarea \n class=\"markdown-editor\"\n .value=${source}\n @blur=${(e: Event) => this.saveMarkdownEdit(index, e)}\n placeholder=\"Enter markdown content here... (# for headings, ** for bold, etc.)\"></textarea>\n ${this.renderFooterActions(index)}\n </div>\n </wa-animation>\n </div>\n `;\n }\n\n const rendered = marked.parse(source) as string;\n\n const editButton = html`\n <wa-button \n size=\"small\" \n appearance=\"plain\"\n @click=${() => this.toggleMarkdownEdit(index)}\n title=\"Edit markdown\">\n <wa-icon name=\"pencil\" label=\"Edit\"></wa-icon>\n </wa-button>\n `;\n\n return html`\n <div class=\"cell-wrapper\">\n <wa-animation \n name=\"bounce\" \n duration=\"1000\" \n iterations=\"1\"\n ?play=${this.highlightedCellIndex === index}\n @wa-finish=${() => this.highlightedCellIndex = -1}>\n <div class=\"cell markdown-cell ${isEmpty ? 'empty' : ''}\" @dblclick=${() => this.toggleMarkdownEdit(index)}>\n <div class=\"cell-header\">\n ${this.renderHeaderActions(index, editButton)}\n <span class=\"cell-label\"></span>\n </div>\n <div class=\"cell-content\">\n ${isEmpty ? html`\n <div class=\"markdown-placeholder\">\n <wa-icon name=\"font\" label=\"Markdown\"></wa-icon>\n <span>Double-click or click the pencil icon to edit markdown</span>\n </div>\n ` : unsafeHTML(rendered)}\n </div>\n ${this.renderFooterActions(index)}\n </div>\n </wa-animation>\n </div>\n `;\n }\n\n private renderCodeCell(cell: NotebookCell, index: number) {\n const output = this.cellOutputs.get(index);\n const isExecuting = this.executingCells.has(index);\n\n // Create or get ref for this cell\n if (!this.cellRefs.has(index)) {\n this.cellRefs.set(index, createRef());\n }\n const cellRef = this.cellRefs.get(index)!;\n\n const runButton = isExecuting ? html`\n <wa-button \n size=\"small\" \n appearance=\"plain\"\n @click=${() => this.cancelExecution(index)}\n title=\"Stop execution\">\n <wa-icon name=\"stop\" label=\"Stop\" style=\"color: var(--wa-color-danger-500);\"></wa-icon>\n </wa-button>\n ` : html`\n <lyra-command \n cmd=\"notebook.runCell\"\n icon=\"play\"\n title=\"Run cell\"\n size=\"small\"\n appearance=\"plain\"\n .params=${{ cellIndex: index }}>\n </lyra-command>\n `;\n\n return html`\n <div class=\"cell-wrapper\">\n <wa-animation \n name=\"bounce\" \n duration=\"1000\" \n iterations=\"1\"\n ?play=${this.highlightedCellIndex === index}\n @wa-finish=${() => this.highlightedCellIndex = -1}>\n <div class=\"cell code-cell ${isExecuting ? 'executing' : ''}\">\n <div class=\"cell-header\">\n <span class=\"cell-label\">\n ${isExecuting ? html`\n In [<wa-animation name=\"pulse\" duration=\"1000\" iterations=\"Infinity\" ?play=${isExecuting}>\n <span class=\"executing-indicator\">*</span>\n </wa-animation>]\n ` : html`\n In [${cell.execution_count ?? ' '}]\n `}\n </span>\n ${this.renderHeaderActions(index, runButton)}\n </div>\n <div class=\"cell-input monaco-container\" ${ref(cellRef)} data-cell-index=\"${index}\"></div>\n ${output ? html`\n <div class=\"cell-output ${output.type === 'error' ? 'output-error' : ''}\">\n <div class=\"output-label\">Out [${index + 1}]:</div>\n ${output.imageData ? html`\n <img src=\"data:image/png;base64,${output.imageData}\" alt=\"Output image\" class=\"output-image\" />\n ` : ''}\n ${output.data ? html`<pre><code>${output.data}</code></pre>` : ''}\n </div>\n ` : ''}\n ${this.renderFooterActions(index)}\n </div>\n </wa-animation>\n </div>\n `;\n }\n\n private renderCell(cell: NotebookCell, index: number) {\n if (cell.cell_type === 'markdown') {\n return this.renderMarkdownCell(cell, index);\n } else if (cell.cell_type === 'code') {\n return this.renderCodeCell(cell, index);\n } else {\n // raw cell\n const source = this.getCellSource(cell);\n return html`\n <div class=\"cell raw-cell\">\n <pre><code>${source}</code></pre>\n </div>\n `;\n }\n }\n\n private addCell(index: number, cellType: 'code' | 'markdown' = 'code') {\n if (!this.notebook) return;\n\n // Save editor contents BEFORE modifying the cells array\n this.saveEditorContents();\n \n this.shiftIndices(index, 'up');\n \n this.notebook.cells.splice(index, 0, this.createCell(cellType));\n \n // Automatically enter edit mode for new markdown cells\n if (cellType === 'markdown') {\n this.editingMarkdownCells.add(index);\n }\n \n this.resetCellState();\n \n // Trigger animation and scroll to the new cell\n this.highlightedCellIndex = index;\n this.updateComplete.then(() => {\n this.scrollToCell(index);\n });\n }\n\n private scrollToCell(index: number) {\n // Find the cell wrapper element\n const cellWrapper = this.shadowRoot?.querySelectorAll('.cell-wrapper')[index];\n if (!cellWrapper) return;\n\n // Find the wa-scroller container (parent of this component)\n const scroller = this.closest('wa-scroller');\n if (!scroller) {\n // Fallback to default scrollIntoView if no scroller found\n cellWrapper.scrollIntoView({ \n behavior: 'smooth', \n block: 'center',\n inline: 'nearest'\n });\n return;\n }\n\n // Manually scroll the wa-scroller to the cell position\n const scrollerRect = scroller.getBoundingClientRect();\n const cellRect = cellWrapper.getBoundingClientRect();\n const scrollTop = scroller.scrollTop;\n \n // Calculate target scroll position (center the cell)\n const targetScroll = scrollTop + (cellRect.top - scrollerRect.top) - (scrollerRect.height / 2) + (cellRect.height / 2);\n \n scroller.scrollTo({\n top: targetScroll,\n behavior: 'smooth'\n });\n }\n\n private saveEditorContents() {\n // Update cell contents from Monaco editors\n this.monacoEditors.forEach((editor, index) => {\n const cell = this.notebook!.cells[index];\n if (cell && cell.cell_type === 'code') {\n cell.source = this.stringToSourceArray(editor.getValue());\n }\n });\n }\n\n private resetCellState() {\n // Clear Monaco editors and refs since indices have changed\n this.monacoEditors.forEach(editor => editor.dispose());\n this.monacoEditors.clear();\n this.cellRefs.clear();\n this.markDirty(true);\n }\n\n private deleteCell(index: number) {\n if (!this.notebook || this.notebook.cells.length <= 1) return;\n\n // Save editor contents BEFORE modifying the cells array\n this.saveEditorContents();\n \n // Remove state for the deleted cell\n this.cellOutputs.delete(index);\n this.executingCells.delete(index);\n this.editingMarkdownCells.delete(index);\n \n this.notebook.cells.splice(index, 1);\n \n this.shiftIndices(index, 'down');\n \n this.resetCellState();\n }\n\n private shiftIndices(startIndex: number, direction: 'up' | 'down') {\n const shift = direction === 'up' ? 1 : -1;\n const filterFn = direction === 'up' \n ? (idx: number) => idx >= startIndex\n : (idx: number) => idx > startIndex;\n const sortFn = direction === 'up'\n ? (a: number, b: number) => b - a\n : (a: number, b: number) => a - b;\n\n const shiftMap = <T>(map: Map<number, T>) => {\n const indices = Array.from(map.keys()).filter(filterFn).sort(sortFn);\n indices.forEach(oldIndex => {\n const value = map.get(oldIndex);\n map.delete(oldIndex);\n map.set(oldIndex + shift, value!);\n });\n };\n\n const shiftSet = (set: Set<number>) => {\n const indices = Array.from(set).filter(filterFn).sort(sortFn);\n indices.forEach(oldIndex => {\n set.delete(oldIndex);\n set.add(oldIndex + shift);\n });\n };\n\n shiftMap(this.cellOutputs);\n shiftSet(this.executingCells);\n shiftSet(this.editingMarkdownCells);\n }\n\n private initializeMonacoEditor(container: HTMLElement, cell: NotebookCell, index: number) {\n const source = this.getCellSource(cell);\n const lineCount = source.split('\\n').length;\n const lineHeight = 19;\n const padding = 10;\n const minHeight = 100;\n const calculatedHeight = Math.max(minHeight, lineCount * lineHeight + padding);\n\n container.style.height = `${calculatedHeight}px`;\n\n const language = this.kernel?.language ?? 'javascript';\n const editor = monaco.editor.create(container, {\n value: source,\n language,\n theme: this.getMonacoTheme(),\n minimap: { enabled: false },\n scrollBeyondLastLine: false,\n lineNumbers: 'on',\n renderLineHighlight: 'all',\n automaticLayout: true,\n fontSize: 14,\n tabSize: 4,\n wordWrap: 'on',\n });\n\n let isEditorFocused = false;\n editor.onDidFocusEditorText(() => { \n isEditorFocused = true;\n this.focusedCellIndex = index;\n });\n editor.onDidBlurEditorText(() => { \n isEditorFocused = false;\n if (this.focusedCellIndex === index) {\n this.focusedCellIndex = -1;\n }\n });\n\n container.addEventListener('wheel', (e: WheelEvent) => {\n if (!isEditorFocused) {\n const scrollTop = editor.getScrollTop();\n const scrollHeight = editor.getScrollHeight();\n const contentHeight = editor.getContentHeight();\n const canScroll = scrollHeight > contentHeight;\n const atBoundary = (e.deltaY < 0 && scrollTop <= 0) || \n (e.deltaY > 0 && scrollTop + contentHeight >= scrollHeight);\n\n if (!canScroll || atBoundary) {\n e.stopImmediatePropagation();\n }\n }\n }, { passive: true, capture: true });\n\n editor.onDidContentSizeChange(() => {\n const contentHeight = editor.getContentHeight();\n container.style.height = `${Math.max(minHeight, contentHeight + padding)}px`;\n editor.layout();\n });\n\n editor.onDidChangeModelContent(() => {\n const currentValue = editor.getValue();\n const originalValue = this.getCellSource(cell);\n if (currentValue !== originalValue) {\n this.markDirty(true);\n }\n });\n\n this.monacoEditors.set(index, editor);\n }\n\n private getMonacoTheme(): string {\n const rootElement = document.documentElement;\n if (rootElement.classList.contains('wa-dark')) {\n return 'vs-dark';\n } else if (rootElement.classList.contains('wa-light')) {\n return 'vs';\n }\n return 'vs-dark';\n }\n\n private openPackageManager() {\n if (!this.kernel?.openPackageManager) return;\n const packages = this.notebook?.metadata?.required_packages ?? [];\n this.kernel.openPackageManager({\n requiredPackages: packages,\n onPackageAdded: (packageName: string) => {\n if (!this.notebook) return;\n if (!this.notebook.metadata) this.notebook.metadata = {};\n if (!this.notebook.metadata.required_packages) this.notebook.metadata.required_packages = [];\n if (!this.notebook.metadata.required_packages.includes(packageName)) {\n this.notebook.metadata.required_packages.push(packageName);\n this.markDirty(true);\n }\n },\n onPackageRemoved: (packageName: string) => {\n if (!this.notebook?.metadata?.required_packages) return;\n const index = this.notebook.metadata.required_packages.indexOf(packageName);\n if (index > -1) {\n this.notebook.metadata.required_packages.splice(index, 1);\n this.markDirty(true);\n }\n },\n });\n }\n\n protected updated(changedProperties: Map<string, any>) {\n super.updated(changedProperties);\n\n if (\n changedProperties.has('kernelConnected') ||\n changedProperties.has('kernelConnecting') ||\n changedProperties.has('kernelVersion') ||\n changedProperties.has('isRunningAll') ||\n changedProperties.has('availableKernels') ||\n changedProperties.has('selectedKernelId')\n ) {\n this.updateToolbar();\n }\n\n if (this.notebook?.cells) {\n this.notebook.cells.forEach((cell, index) => {\n if (cell.cell_type === 'code') {\n const ref = this.cellRefs.get(index);\n if (ref?.value && !this.monacoEditors.has(index)) {\n this.initializeMonacoEditor(ref.value, cell, index);\n }\n }\n });\n }\n }\n\n protected render() {\n if (!this.notebook) {\n return html`<div class=\"loading\">Loading notebook...</div>`;\n }\n\n return html`\n <style>\n ${monacoStyles}\n </style>\n <div class=\"noteboocells\">\n ${repeat(\n this.notebook.cells,\n (_cell, index) => index,\n (cell, index) => this.renderCell(cell, index)\n )}\n </div>\n `;\n }\n\n static styles = css`\n :host {\n display: block;\n width: 100%;\n }\n\n .kernel-select {\n max-width: 10rem;\n }\n\n .noteboocells {\n display: flex;\n flex-direction: column;\n gap: 3rem;\n max-width: 1200px;\n margin: 0 auto;\n padding: 2rem 1rem;\n width: 100%;\n box-sizing: border-box;\n }\n\n .cell-wrapper {\n position: relative;\n }\n\n .cell {\n border-radius: 4px;\n overflow: hidden;\n opacity: 0.9;\n position: relative;\n }\n\n .cell-header-actions {\n display: flex;\n gap: 0.25rem;\n align-items: center;\n opacity: 0.5;\n transition: opacity 0.2s;\n }\n\n .cell-header-actions .divider {\n width: 1px;\n height: 1rem;\n background: var(--wa-color-outline);\n margin: 0 0.25rem;\n opacity: 0.5;\n }\n\n .cell-header:hover .cell-header-actions {\n opacity: 1;\n }\n\n .cell-footer {\n display: flex;\n gap: 0.5rem;\n align-items: center;\n justify-content: flex-start;\n padding: 0.5rem;\n border-top: 1px solid var(--wa-color-outline);\n opacity: 0.5;\n transition: opacity 0.2s;\n }\n\n .cell-footer:hover {\n opacity: 1;\n }\n\n .markdown-cell {\n cursor: pointer;\n transition: opacity 0.2s;\n }\n\n .markdown-cell:hover:not(.editing) {\n opacity: 0.9;\n }\n \n .markdown-cell .cell-content {\n padding: 1rem;\n }\n\n .markdown-cell.editing {\n cursor: default;\n padding: 0;\n }\n \n .markdown-cell.editing .cell-actions {\n display: none;\n }\n\n .markdown-editor {\n width: 100%;\n min-height: 200px;\n padding: 1rem;\n font-family: monospace;\n font-size: 0.95rem;\n line-height: 1.6;\n border: none;\n outline: none;\n resize: vertical;\n background: transparent;\n color: inherit;\n }\n\n .code-cell {\n border-left: 3px solid var(--wa-color-primary-500);\n transition: all 0.3s ease;\n }\n \n .code-cell.executing {\n border-left: 4px solid var(--wa-color-primary-500);\n box-shadow: 0 0 0 2px var(--wa-color-primary-500, rgba(59, 130, 246, 0.3));\n animation: pulse-cell 2s ease-in-out infinite;\n }\n \n @keyframes pulse-cell {\n 0%, 100% {\n box-shadow: 0 0 0 2px var(--wa-color-primary-500, rgba(59, 130, 246, 0.3));\n opacity: 1;\n }\n 50% {\n box-shadow: 0 0 0 4px var(--wa-color-primary-500, rgba(59, 130, 246, 0.5));\n opacity: 0.95;\n }\n }\n\n .cell-header {\n display: flex;\n align-items: center;\n justify-content: flex-start;\n gap: 0.5rem;\n padding: 0.5rem 1rem;\n flex-wrap: nowrap;\n }\n\n .cell-label {\n font-family: monospace;\n font-weight: bold;\n flex-shrink: 0;\n }\n \n .executing-indicator {\n display: inline-block;\n color: var(--wa-color-primary-500);\n font-weight: bold;\n font-size: 1.2em;\n }\n\n .cell-input {\n margin: 0;\n }\n\n .monaco-container {\n min-height: 100px;\n height: auto;\n width: 100%;\n }\n\n .cell-output {\n padding: 1rem;\n }\n\n .output-label {\n font-family: monospace;\n font-weight: bold;\n margin-bottom: 0.5rem;\n opacity: 0.7;\n }\n\n .cell-output pre {\n margin: 0;\n overflow-x: auto;\n }\n\n .cell-output code {\n font-family: 'Courier New', monospace;\n font-size: 0.9rem;\n line-height: 1.5;\n }\n\n .output-image {\n max-width: 100%;\n height: auto;\n display: block;\n margin: 0.5rem 0;\n border-radius: 4px;\n }\n\n .output-error {\n border-left: 3px solid var(--wa-color-danger-500);\n }\n\n .raw-cell {\n padding: 1rem;\n }\n\n .raw-cell pre {\n margin: 0;\n }\n\n .loading {\n display: flex;\n align-items: center;\n justify-content: center;\n height: 100%;\n font-size: 1.2rem;\n }\n\n .markdown-placeholder {\n display: flex;\n align-items: center;\n justify-content: center;\n gap: 0.75rem;\n padding: 3rem 1rem;\n opacity: 0.5;\n font-style: italic;\n transition: opacity 0.2s;\n }\n\n .markdown-cell.empty:hover .markdown-placeholder {\n opacity: 0.8;\n }\n\n .markdown-placeholder wa-icon {\n font-size: 1.5rem;\n }\n 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package/dist/notebook-runtime.d.ts CHANGED
@@ -5,10 +5,13 @@ export declare class LyraNotebookEditor extends LyraPart implements NotebookEdit
5
5
  notebook?: NotebookData;
6
6
  private cellOutputs;
7
7
  private executingCells;
8
- private pyenv?;
9
- private pyConnected;
10
- private pyConnecting;
11
- private pyVersion?;
8
+ private availableKernels;
9
+ private selectedKernelId;
10
+ private kernel;
11
+ private kernelConnected;
12
+ private kernelConnecting;
13
+ private kernelVersion;
14
+ private unsubscribeContributionsToken?;
12
15
  private editingMarkdownCells;
13
16
  private executionCounter;
14
17
  private isRunningAll;
@@ -21,8 +24,13 @@ export declare class LyraNotebookEditor extends LyraPart implements NotebookEdit
21
24
  protected doClose(): void;
22
25
  save(): Promise<void>;
23
26
  protected doBeforeUI(): void;
27
+ private onKernelDropdownSelect;
24
28
  protected renderToolbar(): import('lit-html').TemplateResult<1>;
25
- protected doInitUI(): void;
29
+ private connectKernel;
30
+ protected doInitUI(): Promise<void>;
31
+ private resolveDefaultKernelId;
32
+ private refreshKernels;
33
+ private ensureKernelLoaded;
26
34
  private loadNotebook;
27
35
  private setupThemeObserver;
28
36
  private getCellSource;
@@ -32,7 +40,6 @@ export declare class LyraNotebookEditor extends LyraPart implements NotebookEdit
32
40
  private renderFooterActions;
33
41
  private stringToSourceArray;
34
42
  private createCell;
35
- private initPyodide;
36
43
  executeCell(cellIndex: number): Promise<void>;
37
44
  private cancelExecution;
38
45
  private clearAllOutputs;
@@ -44,7 +51,6 @@ export declare class LyraNotebookEditor extends LyraPart implements NotebookEdit
44
51
  private renderMarkdownCell;
45
52
  private renderCodeCell;
46
53
  private renderCell;
47
- private connectPython;
48
54
  private addCell;
49
55
  private scrollToCell;
50
56
  private saveEditorContents;
package/dist/notebook-runtime.d.ts.map CHANGED
@@ -1 +1 @@
1
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package/dist/notebook-types.d.ts CHANGED
@@ -8,6 +8,7 @@ export interface NotebookCell {
8
8
  export interface NotebookData {
9
9
  cells: NotebookCell[];
10
10
  metadata?: {
11
+ kernel?: string;
11
12
  required_packages?: string[];
12
13
  [key: string]: any;
13
14
  };
package/dist/notebook-types.d.ts.map CHANGED
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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@eclipse-lyra/extension-notebook",
3
- "version": "0.7.33",
3
+ "version": "0.7.38",
4
4
  "type": "module",
5
5
  "main": "./dist/index.js",
6
6
  "exports": {
@@ -11,7 +11,6 @@
11
11
  },
12
12
  "dependencies": {
13
13
  "@eclipse-lyra/core": "*",
14
- "@eclipse-lyra/extension-python-runtime": "*",
15
14
  "marked": "^12.0.0 || ^16.4.1",
16
15
  "monaco-editor": "0.55.1"
17
16
  },
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- {"version":3,"file":"notebook-runtime-yB3_aIh0.js","sources":["../src/notebook-runtime.ts"],"sourcesContent":["import { css, html } from \"lit\";\nimport { customElement, property, state } from \"lit/decorators.js\";\nimport { Ref, createRef, ref } from \"lit/directives/ref.js\";\nimport { repeat } from \"lit/directives/repeat.js\";\nimport { styleMap } from \"lit/directives/style-map.js\";\nimport { unsafeHTML } from \"lit/directives/unsafe-html.js\";\nimport { marked } from \"marked\";\nimport * as monaco from 'monaco-editor';\nimport monacoStyles from \"monaco-editor/min/vs/editor/editor.main.css?raw\";\nimport type { EditorInput } from \"@eclipse-lyra/core\";\nimport { File, workspaceService, createLogger, LyraPart } from \"@eclipse-lyra/core\";\nimport { PyEnv, pythonPackageManagerService } from \"@eclipse-lyra/extension-python-runtime/api\";\nimport type { NotebookCell, NotebookData, NotebookEditorLike } from \"./notebook-types\";\n\nconst logger = createLogger('NotebookRuntime');\n\n@customElement('lyra-notebook-editor')\nexport class LyraNotebookEditor extends LyraPart implements NotebookEditorLike {\n @property({ attribute: false })\n public input?: EditorInput;\n\n @state()\n public notebook?: NotebookData;\n\n @state()\n private cellOutputs: Map<number, any> = new Map();\n\n @state()\n private executingCells: Set<number> = new Set();\n\n @state()\n private pyenv?: PyEnv;\n\n @state()\n private pyConnected: boolean = false;\n\n @state()\n private pyConnecting: boolean = false;\n\n @state()\n private pyVersion?: string;\n\n @state()\n private editingMarkdownCells: Set<number> = new Set();\n\n @state()\n private executionCounter: number = 0;\n\n @state()\n private isRunningAll: boolean = false;\n\n @state()\n private highlightedCellIndex: number = -1;\n\n public focusedCellIndex: number = -1;\n private cancelRunAll: boolean = false;\n\n private monacoEditors: Map<number, monaco.editor.IStandaloneCodeEditor> = new Map();\n private cellRefs: Map<number, Ref<HTMLElement>> = new Map();\n private themeObserver?: MutationObserver;\n\n protected doClose() {\n this.input = undefined;\n this.notebook = undefined;\n this.cellOutputs.clear();\n this.executingCells.clear();\n\n // Dispose Monaco editors\n this.monacoEditors.forEach(editor => editor.dispose());\n this.monacoEditors.clear();\n this.cellRefs.clear();\n this.focusedCellIndex = -1;\n\n if (this.themeObserver) {\n this.themeObserver.disconnect();\n this.themeObserver = undefined;\n }\n\n if (this.pyenv) {\n this.pyenv.close();\n this.pyenv = undefined;\n }\n\n this.pyConnected = false;\n this.pyVersion = undefined;\n }\n\n async save() {\n if (!this.notebook || !this.input) return;\n\n try {\n // Update cell contents from Monaco editors before saving\n this.saveEditorContents();\n\n this.notebook.cells.forEach((cell, index) => {\n if (cell.cell_type === 'code') {\n const output = this.cellOutputs.get(index);\n cell.outputs = output ? this.convertOutputToJupyter(output, cell.execution_count) : [];\n }\n });\n\n // Serialize notebook to JSON\n const notebookJson = JSON.stringify(this.notebook, null, 2);\n\n // Save to file\n const file: File = this.input.data;\n await file.saveContents(notebookJson);\n\n // Mark as not dirty\n this.markDirty(false);\n } catch (error) {\n console.error(\"Failed to save notebook:\", error);\n throw error;\n }\n }\n\n protected doBeforeUI() {\n // Start loading notebook asynchronously\n this.loadNotebook();\n }\n\n protected renderToolbar() {\n const connectionTitle = this.pyConnecting \n ? 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'Connecting...'\n : this.pyConnected && this.pyVersion \n ? `Python ${this.pyVersion}` \n : 'Not connected';\n \n const iconColor = this.pyConnected\n ? \"var(--wa-color-green-40)\"\n : this.pyConnecting\n ? \"var(--wa-color-warning-500)\"\n : \"var(--wa-color-red-40)\";\n\n const runAllButton = this.isRunningAll ? html`\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.cancelAllCells()} title=\"Cancel running all cells\">\n <wa-icon name=\"stop\" label=\"Stop\"></wa-icon>\n Cancel All\n </wa-button>\n ` : html`\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.runAllCells()} title=\"Run all code cells sequentially\">\n <wa-icon name=\"play\" label=\"Run\"></wa-icon>\n Run All\n </wa-button>\n `;\n\n return html`\n <wa-button \n appearance=\"plain\" \n size=\"small\"\n style=\"display: flex; align-items: center; gap: 0.5rem;\"\n ?disabled=${this.pyConnecting}\n @click=${() => this.connectPython()}\n title=${connectionTitle}>\n <wa-icon \n name=\"circle\"\n label=\"Python status\"\n style=${styleMap({ color: iconColor })}\n ></wa-icon>\n ${connectionText}\n </wa-button>\n ${runAllButton}\n <wa-button \n size=\"small\" \n appearance=\"plain\"\n @click=${() => this.clearAllOutputs()}\n title=\"Clear all outputs and reset execution counter\">\n <wa-icon name=\"eraser\" label=\"Clear\"></wa-icon>\n Clear Outputs\n </wa-button>\n <wa-button \n size=\"small\" \n appearance=\"plain\"\n @click=${() => this.restartKernel()}\n title=\"Restart Python kernel (clears all variables and state)\"\n ?disabled=${!this.pyConnected || this.pyConnecting}>\n <wa-icon name=\"arrows-rotate\" label=\"Restart\"></wa-icon>\n Restart Kernel\n </wa-button>\n <wa-button \n size=\"small\" \n appearance=\"plain\"\n @click=${() => this.openPackageManager()}\n title=\"Manage required packages for this notebook\">\n <wa-icon name=\"box\" label=\"Packages\"></wa-icon>\n Packages\n </wa-button>\n `;\n }\n\n protected doInitUI() {\n this.setupThemeObserver();\n }\n\n private async loadNotebook() {\n const file: File = this.input!.data;\n const contents = await file.getContents();\n\n try {\n this.notebook = JSON.parse(contents as string);\n } catch (e) {\n console.error(\"Failed to parse notebook:\", e);\n this.notebook = {\n cells: [{\n cell_type: 'markdown',\n source: ['# Error\\nFailed to parse notebook file.']\n }]\n };\n }\n\n // Initialize execution counter from existing cells\n if (this.notebook?.cells) {\n const maxCount = this.notebook.cells\n .filter(cell => cell.cell_type === 'code')\n .map(cell => cell.execution_count ?? 0)\n .reduce((max, count) => Math.max(max, count), 0);\n this.executionCounter = maxCount;\n\n this.notebook.cells.forEach((cell, index) => {\n if (cell.cell_type === 'code' && cell.outputs && cell.outputs.length > 0) {\n const output = this.convertOutputFromJupyter(cell.outputs[0]);\n if (output) {\n this.cellOutputs.set(index, output);\n }\n }\n });\n }\n }\n\n private setupThemeObserver() {\n const rootElement = document.documentElement;\n let currentTheme = this.getMonacoTheme();\n\n this.themeObserver = new MutationObserver(() => {\n const newTheme = this.getMonacoTheme();\n // Only update if theme actually changed\n if (newTheme !== currentTheme) {\n currentTheme = newTheme;\n monaco.editor.setTheme(newTheme);\n }\n });\n\n this.themeObserver.observe(rootElement, {\n attributes: true,\n attributeFilter: ['class']\n });\n }\n\n private getCellSource(cell: NotebookCell): string {\n return Array.isArray(cell.source) ? cell.source.join('') : cell.source;\n }\n\n private convertOutputToJupyter(output: any, executionCount: number | null | undefined): any[] {\n if (output.type === 'execute_result') {\n const data: any = {};\n if (output.imageData) data['image/png'] = output.imageData;\n if (output.data) data['text/plain'] = output.data;\n return [{\n output_type: 'execute_result',\n data,\n execution_count: executionCount,\n metadata: {}\n }];\n } else if (output.type === 'error') {\n return [{\n output_type: 'error',\n ename: 'Error',\n evalue: output.data,\n traceback: [output.data]\n }];\n }\n return [];\n }\n\n private convertOutputFromJupyter(jupyterOutput: any): any | null {\n if (jupyterOutput.output_type === 'execute_result' && jupyterOutput.data) {\n return {\n type: 'execute_result',\n data: jupyterOutput.data['text/plain'] || '',\n imageData: jupyterOutput.data['image/png'] || undefined\n };\n } else if (jupyterOutput.output_type === 'error') {\n return {\n type: 'error',\n data: jupyterOutput.evalue || jupyterOutput.traceback?.join('\\n') || 'Unknown error'\n };\n }\n return null;\n }\n\n private renderHeaderActions(index: number, additionalButton?: any) {\n return html`\n <div class=\"cell-header-actions\">\n ${additionalButton || ''}\n ${additionalButton ? html`<span class=\"divider\"></span>` : ''}\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index, 'code')} title=\"Add code cell before\">\n <wa-icon name=\"plus\"></wa-icon>\n <wa-icon name=\"code\" label=\"Code\"></wa-icon>\n </wa-button>\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index, 'markdown')} title=\"Add markdown cell before\">\n <wa-icon name=\"plus\"></wa-icon>\n <wa-icon name=\"font\" label=\"Markdown\"></wa-icon>\n </wa-button>\n <span class=\"divider\"></span>\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.deleteCell(index)} title=\"Delete cell\" ?disabled=${this.notebook!.cells.length <= 1}>\n <wa-icon name=\"trash\" label=\"Delete cell\"></wa-icon>\n </wa-button>\n </div>\n `;\n }\n\n private renderFooterActions(index: number) {\n return html`\n <div class=\"cell-footer\">\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index + 1, 'code')} title=\"Add code cell after\">\n <wa-icon name=\"code\" label=\"Code\"></wa-icon>\n <wa-icon name=\"plus\"></wa-icon>\n </wa-button>\n <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index + 1, 'markdown')} title=\"Add markdown cell after\">\n <wa-icon name=\"font\" label=\"Markdown\"></wa-icon>\n <wa-icon name=\"plus\"></wa-icon>\n </wa-button>\n </div>\n `;\n }\n\n // Helper to convert string to Jupyter source format\n private stringToSourceArray(content: string): string[] {\n if (!content) return [''];\n const lines = content.split('\\n').map(line => line + '\\n');\n // Remove trailing newline from last line\n if (lines.length > 0) {\n lines[lines.length - 1] = lines[lines.length - 1].replace(/\\n$/, '');\n }\n return lines;\n }\n\n // Helper to create a new cell\n private createCell(cellType: 'code' | 'markdown'): NotebookCell {\n const newCell: NotebookCell = {\n cell_type: cellType,\n source: [''],\n metadata: {}\n };\n\n if (cellType === 'code') {\n newCell.execution_count = null;\n newCell.outputs = [];\n }\n\n return newCell;\n }\n\n private async initPyodide() {\n if (!this.pyenv) {\n this.pyenv = new PyEnv();\n const workspace = await workspaceService.getWorkspace();\n if (workspace) {\n await this.pyenv.init(workspace);\n this.pyConnected = true;\n\n // Get Python version using sys.version\n try {\n const response = await this.pyenv.execCode('import sys; sys.version.split()[0]');\n this.pyVersion = response?.result || 'Unknown';\n } catch (error) {\n console.error(\"Failed to get Python version:\", error);\n this.pyVersion = 'Unknown';\n }\n\n // Load required packages from notebook metadata\n const requiredPackages = this.notebook?.metadata?.required_packages || [];\n if (requiredPackages.length > 0) {\n try {\n await this.pyenv.loadPackages(requiredPackages);\n } catch (error) {\n console.error(\"Failed to load required packages:\", error);\n }\n }\n\n // Set up matplotlib backend and patch plt.show() if matplotlib is installed\n try {\n await this.pyenv.execCode(`\ntry:\n import matplotlib\n matplotlib.use('agg')\n \n import matplotlib.pyplot as plt\n import io\n import base64\n \n _original_show = plt.show\n _display_data = None\n \n def _patched_show(*args, **kwargs):\n \"\"\"Patched plt.show() that captures the current figure for notebook display.\"\"\"\n global _display_data\n if plt.get_fignums():\n fig = plt.gcf()\n buffer = io.BytesIO()\n fig.savefig(buffer, format='png', bbox_inches='tight', dpi=100)\n buffer.seek(0)\n _display_data = base64.b64encode(buffer.read()).decode('utf-8')\n plt.close(fig)\n # Don't call original show() as it would try to display in a window\n \n plt.show = _patched_show\nexcept ImportError:\n # matplotlib not installed - skip configuration\n pass\n`);\n } catch (error) {\n console.error(\"Failed to configure matplotlib:\", error);\n }\n }\n }\n }\n\n public async executeCell(cellIndex: number) {\n const cell = this.notebook!.cells[cellIndex];\n if (cell.cell_type !== 'code') return;\n\n this.executingCells.add(cellIndex);\n this.requestUpdate();\n\n try {\n await this.initPyodide();\n\n // Get code from Monaco editor if available, otherwise from cell source\n const editor = this.monacoEditors.get(cellIndex);\n let code = editor ? editor.getValue() : this.getCellSource(cell);\n\n // PyEnv now runs in a worker and returns { result, console }\n const response = await this.pyenv!.execCode(code);\n\n // Build output from console output and result\n const outputParts: string[] = [];\n\n // Add console output (stdout/stderr) if present\n if (response && typeof response === 'object' && 'console' in response) {\n const consoleOutput = response.console;\n if (Array.isArray(consoleOutput) && consoleOutput.length > 0) {\n const filteredOutput = consoleOutput.filter(s => s && s.trim());\n if (filteredOutput.length > 0) {\n outputParts.push(...filteredOutput);\n }\n }\n }\n\n // Check if plt.show() was called (which stores data in _display_data)\n let imageData: string | undefined = undefined;\n try {\n const checkDisplayData = await this.pyenv!.execCode('_display_data if \"_display_data\" in dir() else None');\n const displayResult = checkDisplayData && typeof checkDisplayData === 'object' ? \n checkDisplayData.result : checkDisplayData;\n \n if (displayResult && String(displayResult) !== 'None' && String(displayResult) !== 'undefined') {\n imageData = String(displayResult);\n // Clear the display data for next execution\n await this.pyenv!.execCode('_display_data = None');\n }\n } catch (e) {\n logger.debug('No display data to retrieve:', e);\n }\n\n // Add the return value if it exists, but only if we didn't capture a matplotlib figure\n // (matplotlib functions return objects like Text, Line2D etc that aren't useful to display)\n if (!imageData) {\n const result = response && typeof response === 'object' ? response.result : response;\n if (result !== undefined && result !== null && String(result) !== 'undefined') {\n const resultStr = String(result);\n if (resultStr && resultStr !== 'undefined') {\n outputParts.push(resultStr);\n }\n }\n }\n\n this.cellOutputs.set(cellIndex, {\n type: 'execute_result',\n data: outputParts.length > 0 ? outputParts.join('\\n') : undefined,\n imageData: imageData\n });\n\n // Update execution count\n this.executionCounter++;\n cell.execution_count = this.executionCounter;\n this.markDirty(true);\n\n } catch (error) {\n // Check if execution is still marked as running (not cancelled)\n if (this.executingCells.has(cellIndex)) {\n this.cellOutputs.set(cellIndex, {\n type: 'error',\n data: String(error)\n });\n }\n } finally {\n this.executingCells.delete(cellIndex);\n this.requestUpdate();\n }\n }\n\n private async cancelExecution(cellIndex: number) {\n if (!this.pyenv) return;\n\n // Check if graceful interrupt is available (requires SharedArrayBuffer)\n if (this.pyenv.canInterrupt()) {\n // Use interrupt buffer - Python will raise KeyboardInterrupt\n this.pyenv.interrupt();\n // The KeyboardInterrupt will be caught in executeCell's catch block\n } else {\n // SharedArrayBuffer not available - must terminate worker\n this.cellOutputs.set(cellIndex, {\n type: 'error',\n data: 'Execution cancelled by user (worker terminated - SharedArrayBuffer not available for graceful interrupt)'\n });\n\n this.executingCells.delete(cellIndex);\n\n // Terminate and reinitialize\n this.pyenv.close();\n this.pyenv = undefined;\n this.pyConnected = false;\n this.pyVersion = undefined;\n\n // Reinitialize for future executions\n try {\n await this.initPyodide();\n } catch (error) {\n console.error(\"Failed to reinitialize Python after cancellation:\", error);\n }\n\n this.requestUpdate();\n }\n }\n\n private clearAllOutputs() {\n // Clear all outputs\n this.cellOutputs.clear();\n\n // Reset execution counter\n this.executionCounter = 0;\n\n // Reset execution counts on all code cells\n if (this.notebook?.cells) {\n this.notebook.cells.forEach(cell => {\n if (cell.cell_type === 'code') {\n cell.execution_count = null;\n cell.outputs = [];\n }\n });\n }\n\n // Mark as dirty since we've modified the notebook\n this.markDirty(true);\n\n // Force re-render\n this.requestUpdate();\n }\n\n private async restartKernel() {\n if (!this.pyenv || this.pyConnecting) return;\n\n try {\n this.pyConnecting = true;\n \n // Close current environment\n this.pyenv.close();\n this.pyenv = undefined;\n this.pyConnected = false;\n this.pyVersion = undefined;\n\n // Force re-render to show reconnecting state\n this.requestUpdate();\n\n // Reinitialize\n await this.initPyodide();\n\n // Force re-render to show connected state\n this.requestUpdate();\n } catch (error) {\n console.error(\"Failed to restart kernel:\", error);\n } finally {\n this.pyConnecting = false;\n }\n }\n\n private async runAllCells() {\n if (!this.notebook?.cells) return;\n\n this.isRunningAll = true;\n this.cancelRunAll = false;\n this.requestUpdate();\n\n try {\n // Execute all code cells sequentially\n for (let i = 0; i < this.notebook.cells.length; i++) {\n // Check if cancellation was requested\n if (this.cancelRunAll) {\n break;\n }\n\n const cell = this.notebook.cells[i];\n if (cell.cell_type === 'code') {\n await this.executeCell(i);\n }\n }\n } finally {\n this.isRunningAll = false;\n this.cancelRunAll = false;\n this.requestUpdate();\n }\n }\n\n private cancelAllCells() {\n this.cancelRunAll = true;\n }\n\n private toggleMarkdownEdit(index: number) {\n if (this.editingMarkdownCells.has(index)) {\n this.editingMarkdownCells.delete(index);\n } else {\n this.editingMarkdownCells.add(index);\n }\n this.requestUpdate();\n }\n\n private saveMarkdownEdit(index: number, event: Event) {\n const textarea = event.target as HTMLTextAreaElement;\n const newContent = textarea.value;\n\n // Update the cell source\n if (this.notebook && this.notebook.cells[index]) {\n const cell = this.notebook.cells[index];\n const oldContent = this.getCellSource(cell);\n\n cell.source = this.stringToSourceArray(newContent);\n\n // Mark dirty if content changed\n if (oldContent !== newContent) {\n this.markDirty(true);\n }\n }\n\n this.editingMarkdownCells.delete(index);\n this.requestUpdate();\n }\n\n private renderMarkdownCell(cell: NotebookCell, index: number) {\n const source = this.getCellSource(cell);\n const isEmpty = !source || source.trim() === '';\n const isEditing = this.editingMarkdownCells.has(index);\n\n if (isEditing) {\n const editButtons = html`\n <wa-button \n size=\"small\" \n appearance=\"plain\"\n @click=${(e: Event) => {\n const textarea = (e.target as HTMLElement).closest('.markdown-cell')?.querySelector('textarea');\n if (textarea) {\n this.saveMarkdownEdit(index, { target: textarea } as any);\n }\n }}\n title=\"Save changes\">\n <wa-icon name=\"check\" label=\"Save\"></wa-icon>\n </wa-button>\n <wa-button \n size=\"small\" \n appearance=\"plain\"\n @click=${() => this.toggleMarkdownEdit(index)}\n title=\"Cancel editing\">\n <wa-icon name=\"xmark\" label=\"Cancel\"></wa-icon>\n </wa-button>\n `;\n \n return html`\n <div class=\"cell-wrapper\">\n <wa-animation \n name=\"bounce\" \n duration=\"1000\" \n iterations=\"1\"\n ?play=${this.highlightedCellIndex === index}\n @wa-finish=${() => this.highlightedCellIndex = -1}>\n <div class=\"cell markdown-cell editing\">\n <div class=\"cell-header\">\n ${this.renderHeaderActions(index, editButtons)}\n <span class=\"cell-label\">Markdown</span>\n </div>\n <textarea \n class=\"markdown-editor\"\n .value=${source}\n @blur=${(e: Event) => this.saveMarkdownEdit(index, e)}\n placeholder=\"Enter markdown content here... (# for headings, ** for bold, etc.)\"></textarea>\n ${this.renderFooterActions(index)}\n </div>\n </wa-animation>\n </div>\n `;\n }\n\n const rendered = marked.parse(source) as string;\n\n const editButton = html`\n <wa-button \n size=\"small\" \n appearance=\"plain\"\n @click=${() => this.toggleMarkdownEdit(index)}\n title=\"Edit markdown\">\n <wa-icon name=\"pencil\" label=\"Edit\"></wa-icon>\n </wa-button>\n `;\n\n return html`\n <div class=\"cell-wrapper\">\n <wa-animation \n name=\"bounce\" \n duration=\"1000\" \n iterations=\"1\"\n ?play=${this.highlightedCellIndex === index}\n @wa-finish=${() => this.highlightedCellIndex = -1}>\n <div class=\"cell markdown-cell ${isEmpty ? 'empty' : ''}\" @dblclick=${() => this.toggleMarkdownEdit(index)}>\n <div class=\"cell-header\">\n ${this.renderHeaderActions(index, editButton)}\n <span class=\"cell-label\"></span>\n </div>\n <div class=\"cell-content\">\n ${isEmpty ? html`\n <div class=\"markdown-placeholder\">\n <wa-icon name=\"font\" label=\"Markdown\"></wa-icon>\n <span>Double-click or click the pencil icon to edit markdown</span>\n </div>\n ` : unsafeHTML(rendered)}\n </div>\n ${this.renderFooterActions(index)}\n </div>\n </wa-animation>\n </div>\n `;\n }\n\n private renderCodeCell(cell: NotebookCell, index: number) {\n const output = this.cellOutputs.get(index);\n const isExecuting = this.executingCells.has(index);\n\n // Create or get ref for this cell\n if (!this.cellRefs.has(index)) {\n this.cellRefs.set(index, createRef());\n }\n const cellRef = this.cellRefs.get(index)!;\n\n const runButton = isExecuting ? html`\n <wa-button \n size=\"small\" \n appearance=\"plain\"\n @click=${() => this.cancelExecution(index)}\n title=\"Stop execution\">\n <wa-icon name=\"stop\" label=\"Stop\" style=\"color: var(--wa-color-danger-500);\"></wa-icon>\n </wa-button>\n ` : html`\n <lyra-command \n cmd=\"python\"\n icon=\"play\"\n title=\"Run cell\"\n size=\"small\"\n appearance=\"plain\"\n .params=${{ cellIndex: index }}>\n </lyra-command>\n `;\n\n return html`\n <div class=\"cell-wrapper\">\n <wa-animation \n name=\"bounce\" \n duration=\"1000\" \n iterations=\"1\"\n ?play=${this.highlightedCellIndex === index}\n @wa-finish=${() => this.highlightedCellIndex = -1}>\n <div class=\"cell code-cell ${isExecuting ? 'executing' : ''}\">\n <div class=\"cell-header\">\n <span class=\"cell-label\">\n ${isExecuting ? html`\n In [<wa-animation name=\"pulse\" duration=\"1000\" iterations=\"Infinity\" ?play=${isExecuting}>\n <span class=\"executing-indicator\">*</span>\n </wa-animation>]\n ` : html`\n In [${cell.execution_count ?? ' '}]\n `}\n </span>\n ${this.renderHeaderActions(index, runButton)}\n </div>\n <div class=\"cell-input monaco-container\" ${ref(cellRef)} data-cell-index=\"${index}\"></div>\n ${output ? html`\n <div class=\"cell-output ${output.type === 'error' ? 'output-error' : ''}\">\n <div class=\"output-label\">Out [${index + 1}]:</div>\n ${output.imageData ? html`\n <img src=\"data:image/png;base64,${output.imageData}\" alt=\"Output image\" class=\"output-image\" />\n ` : ''}\n ${output.data ? html`<pre><code>${output.data}</code></pre>` : ''}\n </div>\n ` : ''}\n ${this.renderFooterActions(index)}\n </div>\n </wa-animation>\n </div>\n `;\n }\n\n private renderCell(cell: NotebookCell, index: number) {\n if (cell.cell_type === 'markdown') {\n return this.renderMarkdownCell(cell, index);\n } else if (cell.cell_type === 'code') {\n return this.renderCodeCell(cell, index);\n } else {\n // raw cell\n const source = this.getCellSource(cell);\n return html`\n <div class=\"cell raw-cell\">\n <pre><code>${source}</code></pre>\n </div>\n `;\n }\n }\n\n private async connectPython() {\n if (this.pyConnecting || this.pyConnected) {\n return;\n }\n \n try {\n this.pyConnecting = true;\n await this.initPyodide();\n } catch (error) {\n console.error(\"Failed to initialize Pyodide:\", error);\n } finally {\n this.pyConnecting = false;\n }\n }\n\n\n private addCell(index: number, cellType: 'code' | 'markdown' = 'code') {\n if (!this.notebook) return;\n\n // Save editor contents BEFORE modifying the cells array\n this.saveEditorContents();\n \n this.shiftIndices(index, 'up');\n \n this.notebook.cells.splice(index, 0, this.createCell(cellType));\n \n // Automatically enter edit mode for new markdown cells\n if (cellType === 'markdown') {\n this.editingMarkdownCells.add(index);\n }\n \n this.resetCellState();\n \n // Trigger animation and scroll to the new cell\n this.highlightedCellIndex = index;\n this.updateComplete.then(() => {\n this.scrollToCell(index);\n });\n }\n\n private scrollToCell(index: number) {\n // Find the cell wrapper element\n const cellWrapper = this.shadowRoot?.querySelectorAll('.cell-wrapper')[index];\n if (!cellWrapper) return;\n\n // Find the wa-scroller container (parent of this component)\n const scroller = this.closest('wa-scroller');\n if (!scroller) {\n // Fallback to default scrollIntoView if no scroller found\n cellWrapper.scrollIntoView({ \n behavior: 'smooth', \n block: 'center',\n inline: 'nearest'\n });\n return;\n }\n\n // Manually scroll the wa-scroller to the cell position\n const scrollerRect = scroller.getBoundingClientRect();\n const cellRect = cellWrapper.getBoundingClientRect();\n const scrollTop = scroller.scrollTop;\n \n // Calculate target scroll position (center the cell)\n const targetScroll = scrollTop + (cellRect.top - scrollerRect.top) - (scrollerRect.height / 2) + (cellRect.height / 2);\n \n scroller.scrollTo({\n top: targetScroll,\n behavior: 'smooth'\n });\n }\n\n private saveEditorContents() {\n // Update cell contents from Monaco editors\n this.monacoEditors.forEach((editor, index) => {\n const cell = this.notebook!.cells[index];\n if (cell && cell.cell_type === 'code') {\n cell.source = this.stringToSourceArray(editor.getValue());\n }\n });\n }\n\n private resetCellState() {\n // Clear Monaco editors and refs since indices have changed\n this.monacoEditors.forEach(editor => editor.dispose());\n this.monacoEditors.clear();\n this.cellRefs.clear();\n this.markDirty(true);\n }\n\n private deleteCell(index: number) {\n if (!this.notebook || this.notebook.cells.length <= 1) return;\n\n // Save editor contents BEFORE modifying the cells array\n this.saveEditorContents();\n \n // Remove state for the deleted cell\n this.cellOutputs.delete(index);\n this.executingCells.delete(index);\n this.editingMarkdownCells.delete(index);\n \n this.notebook.cells.splice(index, 1);\n \n this.shiftIndices(index, 'down');\n \n this.resetCellState();\n }\n\n private shiftIndices(startIndex: number, direction: 'up' | 'down') {\n const shift = direction === 'up' ? 1 : -1;\n const filterFn = direction === 'up' \n ? (idx: number) => idx >= startIndex\n : (idx: number) => idx > startIndex;\n const sortFn = direction === 'up'\n ? (a: number, b: number) => b - a\n : (a: number, b: number) => a - b;\n\n const shiftMap = <T>(map: Map<number, T>) => {\n const indices = Array.from(map.keys()).filter(filterFn).sort(sortFn);\n indices.forEach(oldIndex => {\n const value = map.get(oldIndex);\n map.delete(oldIndex);\n map.set(oldIndex + shift, value!);\n });\n };\n\n const shiftSet = (set: Set<number>) => {\n const indices = Array.from(set).filter(filterFn).sort(sortFn);\n indices.forEach(oldIndex => {\n set.delete(oldIndex);\n set.add(oldIndex + shift);\n });\n };\n\n shiftMap(this.cellOutputs);\n shiftSet(this.executingCells);\n shiftSet(this.editingMarkdownCells);\n }\n\n private initializeMonacoEditor(container: HTMLElement, cell: NotebookCell, index: number) {\n const source = this.getCellSource(cell);\n const lineCount = source.split('\\n').length;\n const lineHeight = 19;\n const padding = 10;\n const minHeight = 100;\n const calculatedHeight = Math.max(minHeight, lineCount * lineHeight + padding);\n\n container.style.height = `${calculatedHeight}px`;\n\n const editor = monaco.editor.create(container, {\n value: source,\n language: 'python',\n theme: this.getMonacoTheme(),\n minimap: { enabled: false },\n scrollBeyondLastLine: false,\n lineNumbers: 'on',\n renderLineHighlight: 'all',\n automaticLayout: true,\n fontSize: 14,\n tabSize: 4,\n wordWrap: 'on',\n });\n\n let isEditorFocused = false;\n editor.onDidFocusEditorText(() => { \n isEditorFocused = true;\n this.focusedCellIndex = index;\n });\n editor.onDidBlurEditorText(() => { \n isEditorFocused = false;\n if (this.focusedCellIndex === index) {\n this.focusedCellIndex = -1;\n }\n });\n\n container.addEventListener('wheel', (e: WheelEvent) => {\n if (!isEditorFocused) {\n const scrollTop = editor.getScrollTop();\n const scrollHeight = editor.getScrollHeight();\n const contentHeight = editor.getContentHeight();\n const canScroll = scrollHeight > contentHeight;\n const atBoundary = (e.deltaY < 0 && scrollTop <= 0) || \n (e.deltaY > 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