@eclipse-lyra/extension-notebook 0.0.0

package/dist/notebook-runtime-CFgw3UmB.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"notebook-runtime-CFgw3UmB.js","sources":["../src/notebook-runtime.ts"],"sourcesContent":["import { css, html } from \"lit\";\nimport { customElement, property, state } from \"lit/decorators.js\";\nimport { Ref, createRef, ref } from \"lit/directives/ref.js\";\nimport { repeat } from \"lit/directives/repeat.js\";\nimport { styleMap } from \"lit/directives/style-map.js\";\nimport { unsafeHTML } from \"lit/directives/unsafe-html.js\";\nimport { marked } from \"marked\";\nimport * as monaco from 'monaco-editor';\nimport monacoStyles from \"monaco-editor/min/vs/editor/editor.main.css?raw\";\nimport type { EditorInput } from \"@eclipse-lyra/core\";\nimport { File, workspaceService } from \"@eclipse-lyra/core\";\nimport { PyEnv, pythonPackageManagerService } from \"@eclipse-lyra/extension-python-runtime/api\";\nimport { LyraPart } from \"@eclipse-lyra/core\";\nimport type { NotebookCell, NotebookData, NotebookEditorLike } from \"./notebook-types\";\n\n@customElement('lyra-notebook-editor')\nexport class LyraNotebookEditor extends LyraPart implements NotebookEditorLike {\n    @property({ attribute: false })\n    public input?: EditorInput;\n\n    @state()\n    public notebook?: NotebookData;\n\n    @state()\n    private cellOutputs: Map<number, any> = new Map();\n\n    @state()\n    private executingCells: Set<number> = new Set();\n\n    @state()\n    private pyenv?: PyEnv;\n\n    @state()\n    private pyConnected: boolean = false;\n\n    @state()\n    private pyConnecting: boolean = false;\n\n    @state()\n    private pyVersion?: string;\n\n    @state()\n    private editingMarkdownCells: Set<number> = new Set();\n\n    @state()\n    private executionCounter: number = 0;\n\n    @state()\n    private isRunningAll: boolean = false;\n\n    @state()\n    private highlightedCellIndex: number = -1;\n\n    public focusedCellIndex: number = -1;\n    private cancelRunAll: boolean = false;\n\n    private monacoEditors: Map<number, monaco.editor.IStandaloneCodeEditor> = new Map();\n    private cellRefs: Map<number, Ref<HTMLElement>> = new Map();\n    private themeObserver?: MutationObserver;\n\n    protected doClose() {\n        this.input = undefined;\n        this.notebook = undefined;\n        this.cellOutputs.clear();\n        this.executingCells.clear();\n\n        // Dispose Monaco editors\n        this.monacoEditors.forEach(editor => editor.dispose());\n        this.monacoEditors.clear();\n        this.cellRefs.clear();\n        this.focusedCellIndex = -1;\n\n        if (this.themeObserver) {\n            this.themeObserver.disconnect();\n            this.themeObserver = undefined;\n        }\n\n        if (this.pyenv) {\n            this.pyenv.close();\n            this.pyenv = undefined;\n        }\n\n        this.pyConnected = false;\n        this.pyVersion = undefined;\n    }\n\n    async save() {\n        if (!this.notebook || !this.input) return;\n\n        try {\n            // Update cell contents from Monaco editors before saving\n            this.saveEditorContents();\n\n            this.notebook.cells.forEach((cell, index) => {\n                if (cell.cell_type === 'code') {\n                    const output = this.cellOutputs.get(index);\n                    cell.outputs = output ? this.convertOutputToJupyter(output, cell.execution_count) : [];\n                }\n            });\n\n            // Serialize notebook to JSON\n            const notebookJson = JSON.stringify(this.notebook, null, 2);\n\n            // Save to file\n            const file: File = this.input.data;\n            await file.saveContents(notebookJson);\n\n            // Mark as not dirty\n            this.markDirty(false);\n        } catch (error) {\n            console.error(\"Failed to save notebook:\", error);\n            throw error;\n        }\n    }\n\n    protected doBeforeUI() {\n        // Start loading notebook asynchronously\n        this.loadNotebook();\n    }\n\n    protected renderToolbar() {\n        const connectionTitle = this.pyConnecting \n            ? 'Connecting to Python...' \n            : this.pyConnected \n                ? 'Python Connected' \n                : 'Python Disconnected - Click to connect';\n        \n        const connectionText = this.pyConnecting\n            ? 'Connecting...'\n            : this.pyConnected && this.pyVersion \n                ? `Python ${this.pyVersion}` \n                : 'Not connected';\n        \n        const iconColor = this.pyConnected\n            ? \"var(--wa-color-green-40)\"\n            : this.pyConnecting\n                ? \"var(--wa-color-warning-500)\"\n                : \"var(--wa-color-red-40)\";\n\n        const runAllButton = this.isRunningAll ? html`\n            <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.cancelAllCells()} title=\"Cancel running all cells\">\n                <wa-icon name=\"stop\" label=\"Stop\"></wa-icon>\n                Cancel All\n            </wa-button>\n        ` : html`\n            <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.runAllCells()} title=\"Run all code cells sequentially\">\n                <wa-icon name=\"play\" label=\"Run\"></wa-icon>\n                Run All\n            </wa-button>\n        `;\n\n        return html`\n            <wa-button \n                appearance=\"plain\" \n                size=\"small\"\n                style=\"display: flex; align-items: center; gap: 0.5rem;\"\n                ?disabled=${this.pyConnecting}\n                @click=${() => this.connectPython()}\n                title=${connectionTitle}>\n                <wa-icon \n                    name=\"circle\"\n                    label=\"Python status\"\n                    style=${styleMap({ color: iconColor })}\n                ></wa-icon>\n                ${connectionText}\n            </wa-button>\n            ${runAllButton}\n            <wa-button \n                size=\"small\" \n                appearance=\"plain\"\n                @click=${() => this.clearAllOutputs()}\n                title=\"Clear all outputs and reset execution counter\">\n                <wa-icon name=\"eraser\" label=\"Clear\"></wa-icon>\n                Clear Outputs\n            </wa-button>\n            <wa-button \n                size=\"small\" \n                appearance=\"plain\"\n                @click=${() => this.restartKernel()}\n                title=\"Restart Python kernel (clears all variables and state)\"\n                ?disabled=${!this.pyConnected || this.pyConnecting}>\n                <wa-icon name=\"arrows-rotate\" label=\"Restart\"></wa-icon>\n                Restart Kernel\n            </wa-button>\n            <wa-button \n                size=\"small\" \n                appearance=\"plain\"\n                @click=${() => this.openPackageManager()}\n                title=\"Manage required packages for this notebook\">\n                <wa-icon name=\"box\" label=\"Packages\"></wa-icon>\n                Packages\n            </wa-button>\n        `;\n    }\n\n    protected doInitUI() {\n        this.setupThemeObserver();\n    }\n\n    private async loadNotebook() {\n        const file: File = this.input!.data;\n        const contents = await file.getContents();\n\n        try {\n            this.notebook = JSON.parse(contents as string);\n        } catch (e) {\n            console.error(\"Failed to parse notebook:\", e);\n            this.notebook = {\n                cells: [{\n                    cell_type: 'markdown',\n                    source: ['# Error\\nFailed to parse notebook file.']\n                }]\n            };\n        }\n\n        // Initialize execution counter from existing cells\n        if (this.notebook?.cells) {\n            const maxCount = this.notebook.cells\n                .filter(cell => cell.cell_type === 'code')\n                .map(cell => cell.execution_count ?? 0)\n                .reduce((max, count) => Math.max(max, count), 0);\n            this.executionCounter = maxCount;\n\n            this.notebook.cells.forEach((cell, index) => {\n                if (cell.cell_type === 'code' && cell.outputs && cell.outputs.length > 0) {\n                    const output = this.convertOutputFromJupyter(cell.outputs[0]);\n                    if (output) {\n                        this.cellOutputs.set(index, output);\n                    }\n                }\n            });\n        }\n    }\n\n    private setupThemeObserver() {\n        const rootElement = document.documentElement;\n        let currentTheme = this.getMonacoTheme();\n\n        this.themeObserver = new MutationObserver(() => {\n            const newTheme = this.getMonacoTheme();\n            // Only update if theme actually changed\n            if (newTheme !== currentTheme) {\n                currentTheme = newTheme;\n                monaco.editor.setTheme(newTheme);\n            }\n        });\n\n        this.themeObserver.observe(rootElement, {\n            attributes: true,\n            attributeFilter: ['class']\n        });\n    }\n\n    private getCellSource(cell: NotebookCell): string {\n        return Array.isArray(cell.source) ? cell.source.join('') : cell.source;\n    }\n\n    private convertOutputToJupyter(output: any, executionCount: number | null | undefined): any[] {\n        if (output.type === 'execute_result') {\n            const data: any = {};\n            if (output.imageData) data['image/png'] = output.imageData;\n            if (output.data) data['text/plain'] = output.data;\n            return [{\n                output_type: 'execute_result',\n                data,\n                execution_count: executionCount,\n                metadata: {}\n            }];\n        } else if (output.type === 'error') {\n            return [{\n                output_type: 'error',\n                ename: 'Error',\n                evalue: output.data,\n                traceback: [output.data]\n            }];\n        }\n        return [];\n    }\n\n    private convertOutputFromJupyter(jupyterOutput: any): any | null {\n        if (jupyterOutput.output_type === 'execute_result' && jupyterOutput.data) {\n            return {\n                type: 'execute_result',\n                data: jupyterOutput.data['text/plain'] || '',\n                imageData: jupyterOutput.data['image/png'] || undefined\n            };\n        } else if (jupyterOutput.output_type === 'error') {\n            return {\n                type: 'error',\n                data: jupyterOutput.evalue || jupyterOutput.traceback?.join('\\n') || 'Unknown error'\n            };\n        }\n        return null;\n    }\n\n    private renderHeaderActions(index: number, additionalButton?: any) {\n        return html`\n            <div class=\"cell-header-actions\">\n                ${additionalButton || ''}\n                ${additionalButton ? html`<span class=\"divider\"></span>` : ''}\n                <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index, 'code')} title=\"Add code cell before\">\n                    <wa-icon name=\"plus\"></wa-icon>\n                    <wa-icon name=\"code\" label=\"Code\"></wa-icon>\n                </wa-button>\n                <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index, 'markdown')} title=\"Add markdown cell before\">\n                    <wa-icon name=\"plus\"></wa-icon>\n                    <wa-icon name=\"font\" label=\"Markdown\"></wa-icon>\n                </wa-button>\n                <span class=\"divider\"></span>\n                <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.deleteCell(index)} title=\"Delete cell\" ?disabled=${this.notebook!.cells.length <= 1}>\n                    <wa-icon name=\"trash\" label=\"Delete cell\"></wa-icon>\n                </wa-button>\n            </div>\n        `;\n    }\n\n    private renderFooterActions(index: number) {\n        return html`\n            <div class=\"cell-footer\">\n                <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index + 1, 'code')} title=\"Add code cell after\">\n                    <wa-icon name=\"code\" label=\"Code\"></wa-icon>\n                    <wa-icon name=\"plus\"></wa-icon>\n                </wa-button>\n                <wa-button size=\"small\" appearance=\"plain\" @click=${() => this.addCell(index + 1, 'markdown')} title=\"Add markdown cell after\">\n                    <wa-icon name=\"font\" label=\"Markdown\"></wa-icon>\n                    <wa-icon name=\"plus\"></wa-icon>\n                </wa-button>\n            </div>\n        `;\n    }\n\n    // Helper to convert string to Jupyter source format\n    private stringToSourceArray(content: string): string[] {\n        if (!content) return [''];\n        const lines = content.split('\\n').map(line => line + '\\n');\n        // Remove trailing newline from last line\n        if (lines.length > 0) {\n            lines[lines.length - 1] = lines[lines.length - 1].replace(/\\n$/, '');\n        }\n        return lines;\n    }\n\n    // Helper to create a new cell\n    private createCell(cellType: 'code' | 'markdown'): NotebookCell {\n        const newCell: NotebookCell = {\n            cell_type: cellType,\n            source: [''],\n            metadata: {}\n        };\n\n        if (cellType === 'code') {\n            newCell.execution_count = null;\n            newCell.outputs = [];\n        }\n\n        return newCell;\n    }\n\n    private async initPyodide() {\n        if (!this.pyenv) {\n            this.pyenv = new PyEnv();\n            const workspace = await workspaceService.getWorkspace();\n            if (workspace) {\n                await this.pyenv.init(workspace);\n                this.pyConnected = true;\n\n                // Get Python version using sys.version\n                try {\n                    const response = await this.pyenv.execCode('import sys; sys.version.split()[0]');\n                    this.pyVersion = response?.result || 'Unknown';\n                } catch (error) {\n                    console.error(\"Failed to get Python version:\", error);\n                    this.pyVersion = 'Unknown';\n                }\n\n                // Load required packages from notebook metadata\n                const requiredPackages = this.notebook?.metadata?.required_packages || [];\n                if (requiredPackages.length > 0) {\n                    try {\n                        await this.pyenv.loadPackages(requiredPackages);\n                    } catch (error) {\n                        console.error(\"Failed to load required packages:\", error);\n                    }\n                }\n\n                // Set up matplotlib backend and patch plt.show() if matplotlib is installed\n                try {\n                    await this.pyenv.execCode(`\ntry:\n    import matplotlib\n    matplotlib.use('agg')\n    \n    import matplotlib.pyplot as plt\n    import io\n    import base64\n    \n    _original_show = plt.show\n    _display_data = None\n    \n    def _patched_show(*args, **kwargs):\n        \"\"\"Patched plt.show() that captures the current figure for notebook display.\"\"\"\n        global _display_data\n        if plt.get_fignums():\n            fig = plt.gcf()\n            buffer = io.BytesIO()\n            fig.savefig(buffer, format='png', bbox_inches='tight', dpi=100)\n            buffer.seek(0)\n            _display_data = base64.b64encode(buffer.read()).decode('utf-8')\n            plt.close(fig)\n        # Don't call original show() as it would try to display in a window\n    \n    plt.show = _patched_show\nexcept ImportError:\n    # matplotlib not installed - skip configuration\n    pass\n`);\n                } catch (error) {\n                    console.error(\"Failed to configure matplotlib:\", error);\n                }\n            }\n        }\n    }\n\n    public async executeCell(cellIndex: number) {\n        const cell = this.notebook!.cells[cellIndex];\n        if (cell.cell_type !== 'code') return;\n\n        this.executingCells.add(cellIndex);\n        this.requestUpdate();\n\n        try {\n            await this.initPyodide();\n\n            // Get code from Monaco editor if available, otherwise from cell source\n            const editor = this.monacoEditors.get(cellIndex);\n            let code = editor ? editor.getValue() : this.getCellSource(cell);\n\n            // PyEnv now runs in a worker and returns { result, console }\n            const response = await this.pyenv!.execCode(code);\n\n            // Build output from console output and result\n            const outputParts: string[] = [];\n\n            // Add console output (stdout/stderr) if present\n            if (response && typeof response === 'object' && 'console' in response) {\n                const consoleOutput = response.console;\n                if (Array.isArray(consoleOutput) && consoleOutput.length > 0) {\n                    const filteredOutput = consoleOutput.filter(s => s && s.trim());\n                    if (filteredOutput.length > 0) {\n                        outputParts.push(...filteredOutput);\n                    }\n                }\n            }\n\n            // Check if plt.show() was called (which stores data in _display_data)\n            let imageData: string | undefined = undefined;\n            try {\n                const checkDisplayData = await this.pyenv!.execCode('_display_data if \"_display_data\" in dir() else None');\n                const displayResult = checkDisplayData && typeof checkDisplayData === 'object' ? \n                    checkDisplayData.result : checkDisplayData;\n                \n                if (displayResult && String(displayResult) !== 'None' && String(displayResult) !== 'undefined') {\n                    imageData = String(displayResult);\n                    // Clear the display data for next execution\n                    await this.pyenv!.execCode('_display_data = None');\n                }\n            } catch (e) {\n                // No display data, which is fine\n                console.debug('No display data to retrieve:', e);\n            }\n\n            // Add the return value if it exists, but only if we didn't capture a matplotlib figure\n            // (matplotlib functions return objects like Text, Line2D etc that aren't useful to display)\n            if (!imageData) {\n                const result = response && typeof response === 'object' ? response.result : response;\n                if (result !== undefined && result !== null && String(result) !== 'undefined') {\n                    const resultStr = String(result);\n                    if (resultStr && resultStr !== 'undefined') {\n                        outputParts.push(resultStr);\n                    }\n                }\n            }\n\n            this.cellOutputs.set(cellIndex, {\n                type: 'execute_result',\n                data: outputParts.length > 0 ? outputParts.join('\\n') : undefined,\n                imageData: imageData\n            });\n\n            // Update execution count\n            this.executionCounter++;\n            cell.execution_count = this.executionCounter;\n            this.markDirty(true);\n\n        } catch (error) {\n            // Check if execution is still marked as running (not cancelled)\n            if (this.executingCells.has(cellIndex)) {\n                this.cellOutputs.set(cellIndex, {\n                    type: 'error',\n                    data: String(error)\n                });\n            }\n        } finally {\n            this.executingCells.delete(cellIndex);\n            this.requestUpdate();\n        }\n    }\n\n    private async cancelExecution(cellIndex: number) {\n        if (!this.pyenv) return;\n\n        // Check if graceful interrupt is available (requires SharedArrayBuffer)\n        if (this.pyenv.canInterrupt()) {\n            // Use interrupt buffer - Python will raise KeyboardInterrupt\n            this.pyenv.interrupt();\n            // The KeyboardInterrupt will be caught in executeCell's catch block\n        } else {\n            // SharedArrayBuffer not available - must terminate worker\n            this.cellOutputs.set(cellIndex, {\n                type: 'error',\n                data: 'Execution cancelled by user (worker terminated - SharedArrayBuffer not available for graceful interrupt)'\n            });\n\n            this.executingCells.delete(cellIndex);\n\n            // Terminate and reinitialize\n            this.pyenv.close();\n            this.pyenv = undefined;\n            this.pyConnected = false;\n            this.pyVersion = undefined;\n\n            // Reinitialize for future executions\n            try {\n                await this.initPyodide();\n            } catch (error) {\n                console.error(\"Failed to reinitialize Python after cancellation:\", error);\n            }\n\n            this.requestUpdate();\n        }\n    }\n\n    private clearAllOutputs() {\n        // Clear all outputs\n        this.cellOutputs.clear();\n\n        // Reset execution counter\n        this.executionCounter = 0;\n\n        // Reset execution counts on all code cells\n        if (this.notebook?.cells) {\n            this.notebook.cells.forEach(cell => {\n                if (cell.cell_type === 'code') {\n                    cell.execution_count = null;\n                    cell.outputs = [];\n                }\n            });\n        }\n\n        // Mark as dirty since we've modified the notebook\n        this.markDirty(true);\n\n        // Force re-render\n        this.requestUpdate();\n    }\n\n    private async restartKernel() {\n        if (!this.pyenv || this.pyConnecting) return;\n\n        try {\n            this.pyConnecting = true;\n            \n            // Close current environment\n            this.pyenv.close();\n            this.pyenv = undefined;\n            this.pyConnected = false;\n            this.pyVersion = undefined;\n\n            // Force re-render to show reconnecting state\n            this.requestUpdate();\n\n            // Reinitialize\n            await this.initPyodide();\n\n            // Force re-render to show connected state\n            this.requestUpdate();\n        } catch (error) {\n            console.error(\"Failed to restart kernel:\", error);\n        } finally {\n            this.pyConnecting = false;\n        }\n    }\n\n    private async runAllCells() {\n        if (!this.notebook?.cells) return;\n\n        this.isRunningAll = true;\n        this.cancelRunAll = false;\n        this.requestUpdate();\n\n        try {\n            // Execute all code cells sequentially\n            for (let i = 0; i < this.notebook.cells.length; i++) {\n                // Check if cancellation was requested\n                if (this.cancelRunAll) {\n                    break;\n                }\n\n                const cell = this.notebook.cells[i];\n                if (cell.cell_type === 'code') {\n                    await this.executeCell(i);\n                }\n            }\n        } finally {\n            this.isRunningAll = false;\n            this.cancelRunAll = false;\n            this.requestUpdate();\n        }\n    }\n\n    private cancelAllCells() {\n        this.cancelRunAll = true;\n    }\n\n    private toggleMarkdownEdit(index: number) {\n        if (this.editingMarkdownCells.has(index)) {\n            this.editingMarkdownCells.delete(index);\n        } else {\n            this.editingMarkdownCells.add(index);\n        }\n        this.requestUpdate();\n    }\n\n    private saveMarkdownEdit(index: number, event: Event) {\n        const textarea = event.target as HTMLTextAreaElement;\n        const newContent = textarea.value;\n\n        // Update the cell source\n        if (this.notebook && this.notebook.cells[index]) {\n            const cell = this.notebook.cells[index];\n            const oldContent = this.getCellSource(cell);\n\n            cell.source = this.stringToSourceArray(newContent);\n\n            // Mark dirty if content changed\n            if (oldContent !== newContent) {\n                this.markDirty(true);\n            }\n        }\n\n        this.editingMarkdownCells.delete(index);\n        this.requestUpdate();\n    }\n\n    private renderMarkdownCell(cell: NotebookCell, index: number) {\n        const source = this.getCellSource(cell);\n        const isEmpty = !source || source.trim() === '';\n        const isEditing = this.editingMarkdownCells.has(index);\n\n        if (isEditing) {\n            const editButtons = html`\n                <wa-button \n                    size=\"small\" \n                    appearance=\"plain\"\n                    @click=${(e: Event) => {\n                        const textarea = (e.target as HTMLElement).closest('.markdown-cell')?.querySelector('textarea');\n                        if (textarea) {\n                            this.saveMarkdownEdit(index, { target: textarea } as any);\n                        }\n                    }}\n                    title=\"Save changes\">\n                    <wa-icon name=\"check\" label=\"Save\"></wa-icon>\n                </wa-button>\n                <wa-button \n                    size=\"small\" \n                    appearance=\"plain\"\n                    @click=${() => this.toggleMarkdownEdit(index)}\n                    title=\"Cancel editing\">\n                    <wa-icon name=\"xmark\" label=\"Cancel\"></wa-icon>\n                </wa-button>\n            `;\n            \n            return html`\n                <div class=\"cell-wrapper\">\n                    <wa-animation \n                        name=\"bounce\" \n                        duration=\"1000\" \n                        iterations=\"1\"\n                        ?play=${this.highlightedCellIndex === index}\n                        @wa-finish=${() => this.highlightedCellIndex = -1}>\n                        <div class=\"cell markdown-cell editing\">\n                            <div class=\"cell-header\">\n                                ${this.renderHeaderActions(index, editButtons)}\n                                <span class=\"cell-label\">Markdown</span>\n                            </div>\n                            <textarea \n                                class=\"markdown-editor\"\n                                .value=${source}\n                                @blur=${(e: Event) => this.saveMarkdownEdit(index, e)}\n                                placeholder=\"Enter markdown content here... (# for headings, ** for bold, etc.)\"></textarea>\n                            ${this.renderFooterActions(index)}\n                        </div>\n                    </wa-animation>\n                </div>\n            `;\n        }\n\n        const rendered = marked.parse(source) as string;\n\n        const editButton = html`\n            <wa-button \n                size=\"small\" \n                appearance=\"plain\"\n                @click=${() => this.toggleMarkdownEdit(index)}\n                title=\"Edit markdown\">\n                <wa-icon name=\"pencil\" label=\"Edit\"></wa-icon>\n            </wa-button>\n        `;\n\n        return html`\n            <div class=\"cell-wrapper\">\n                <wa-animation \n                    name=\"bounce\" \n                    duration=\"1000\" \n                    iterations=\"1\"\n                    ?play=${this.highlightedCellIndex === index}\n                    @wa-finish=${() => this.highlightedCellIndex = -1}>\n                    <div class=\"cell markdown-cell ${isEmpty ? 'empty' : ''}\" @dblclick=${() => this.toggleMarkdownEdit(index)}>\n                        <div class=\"cell-header\">\n                            ${this.renderHeaderActions(index, editButton)}\n                            <span class=\"cell-label\"></span>\n                        </div>\n                        <div class=\"cell-content\">\n                            ${isEmpty ? html`\n                                <div class=\"markdown-placeholder\">\n                                    <wa-icon name=\"font\" label=\"Markdown\"></wa-icon>\n                                    <span>Double-click or click the pencil icon to edit markdown</span>\n                                </div>\n                            ` : unsafeHTML(rendered)}\n                        </div>\n                        ${this.renderFooterActions(index)}\n                    </div>\n                </wa-animation>\n            </div>\n        `;\n    }\n\n    private renderCodeCell(cell: NotebookCell, index: number) {\n        const output = this.cellOutputs.get(index);\n        const isExecuting = this.executingCells.has(index);\n\n        // Create or get ref for this cell\n        if (!this.cellRefs.has(index)) {\n            this.cellRefs.set(index, createRef());\n        }\n        const cellRef = this.cellRefs.get(index)!;\n\n        const runButton = isExecuting ? html`\n            <wa-button \n                size=\"small\" \n                appearance=\"plain\"\n                @click=${() => this.cancelExecution(index)}\n                title=\"Stop execution\">\n                <wa-icon name=\"stop\" label=\"Stop\" style=\"color: var(--wa-color-danger-500);\"></wa-icon>\n            </wa-button>\n        ` : html`\n            <lyra-command \n                cmd=\"python\"\n                icon=\"play\"\n                title=\"Run cell\"\n                size=\"small\"\n                appearance=\"plain\"\n                .params=${{ cellIndex: index }}>\n            </lyra-command>\n        `;\n\n        return html`\n            <div class=\"cell-wrapper\">\n                <wa-animation \n                    name=\"bounce\" \n                    duration=\"1000\" \n                    iterations=\"1\"\n                    ?play=${this.highlightedCellIndex === index}\n                    @wa-finish=${() => this.highlightedCellIndex = -1}>\n                    <div class=\"cell code-cell ${isExecuting ? 'executing' : ''}\">\n                        <div class=\"cell-header\">\n                            <span class=\"cell-label\">\n                                ${isExecuting ? html`\n                                    In [<wa-animation name=\"pulse\" duration=\"1000\" iterations=\"Infinity\" ?play=${isExecuting}>\n                                        <span class=\"executing-indicator\">*</span>\n                                    </wa-animation>]\n                                ` : html`\n                                    In [${cell.execution_count ?? ' '}]\n                                `}\n                            </span>\n                            ${this.renderHeaderActions(index, runButton)}\n                        </div>\n                        <div class=\"cell-input monaco-container\" ${ref(cellRef)} data-cell-index=\"${index}\"></div>\n                        ${output ? html`\n                            <div class=\"cell-output ${output.type === 'error' ? 'output-error' : ''}\">\n                                <div class=\"output-label\">Out [${index + 1}]:</div>\n                                ${output.imageData ? html`\n                                    <img src=\"data:image/png;base64,${output.imageData}\" alt=\"Output image\" class=\"output-image\" />\n                                ` : ''}\n                                ${output.data ? html`<pre><code>${output.data}</code></pre>` : ''}\n                            </div>\n                        ` : ''}\n                        ${this.renderFooterActions(index)}\n                    </div>\n                </wa-animation>\n            </div>\n        `;\n    }\n\n    private renderCell(cell: NotebookCell, index: number) {\n        if (cell.cell_type === 'markdown') {\n            return this.renderMarkdownCell(cell, index);\n        } else if (cell.cell_type === 'code') {\n            return this.renderCodeCell(cell, index);\n        } else {\n            // raw cell\n            const source = this.getCellSource(cell);\n            return html`\n                <div class=\"cell raw-cell\">\n                    <pre><code>${source}</code></pre>\n                </div>\n            `;\n        }\n    }\n\n    private async connectPython() {\n        if (this.pyConnecting || this.pyConnected) {\n            return;\n        }\n        \n        try {\n            this.pyConnecting = true;\n            await this.initPyodide();\n        } catch (error) {\n            console.error(\"Failed to initialize Pyodide:\", error);\n        } finally {\n            this.pyConnecting = false;\n        }\n    }\n\n\n    private addCell(index: number, cellType: 'code' | 'markdown' = 'code') {\n        if (!this.notebook) return;\n\n        // Save editor contents BEFORE modifying the cells array\n        this.saveEditorContents();\n        \n        this.shiftIndices(index, 'up');\n        \n        this.notebook.cells.splice(index, 0, this.createCell(cellType));\n        \n        // Automatically enter edit mode for new markdown cells\n        if (cellType === 'markdown') {\n            this.editingMarkdownCells.add(index);\n        }\n        \n        this.resetCellState();\n        \n        // Trigger animation and scroll to the new cell\n        this.highlightedCellIndex = index;\n        this.updateComplete.then(() => {\n            this.scrollToCell(index);\n        });\n    }\n\n    private scrollToCell(index: number) {\n        // Find the cell wrapper element\n        const cellWrapper = this.shadowRoot?.querySelectorAll('.cell-wrapper')[index];\n        if (!cellWrapper) return;\n\n        // Find the wa-scroller container (parent of this component)\n        const scroller = this.closest('wa-scroller');\n        if (!scroller) {\n            // Fallback to default scrollIntoView if no scroller found\n            cellWrapper.scrollIntoView({ \n                behavior: 'smooth', \n                block: 'center',\n                inline: 'nearest'\n            });\n            return;\n        }\n\n        // Manually scroll the wa-scroller to the cell position\n        const scrollerRect = scroller.getBoundingClientRect();\n        const cellRect = cellWrapper.getBoundingClientRect();\n        const scrollTop = scroller.scrollTop;\n        \n        // Calculate target scroll position (center the cell)\n        const targetScroll = scrollTop + (cellRect.top - scrollerRect.top) - (scrollerRect.height / 2) + (cellRect.height / 2);\n        \n        scroller.scrollTo({\n            top: targetScroll,\n            behavior: 'smooth'\n        });\n    }\n\n    private saveEditorContents() {\n        // Update cell contents from Monaco editors\n        this.monacoEditors.forEach((editor, index) => {\n            const cell = this.notebook!.cells[index];\n            if (cell && cell.cell_type === 'code') {\n                cell.source = this.stringToSourceArray(editor.getValue());\n            }\n        });\n    }\n\n    private resetCellState() {\n        // Clear Monaco editors and refs since indices have changed\n        this.monacoEditors.forEach(editor => editor.dispose());\n        this.monacoEditors.clear();\n        this.cellRefs.clear();\n        this.markDirty(true);\n    }\n\n    private deleteCell(index: number) {\n        if (!this.notebook || this.notebook.cells.length <= 1) return;\n\n        // Save editor contents BEFORE modifying the cells array\n        this.saveEditorContents();\n        \n        // Remove state for the deleted cell\n        this.cellOutputs.delete(index);\n        this.executingCells.delete(index);\n        this.editingMarkdownCells.delete(index);\n        \n        this.notebook.cells.splice(index, 1);\n        \n        this.shiftIndices(index, 'down');\n        \n        this.resetCellState();\n    }\n\n    private shiftIndices(startIndex: number, direction: 'up' | 'down') {\n        const shift = direction === 'up' ? 1 : -1;\n        const filterFn = direction === 'up' \n            ? (idx: number) => idx >= startIndex\n            : (idx: number) => idx > startIndex;\n        const sortFn = direction === 'up'\n            ? (a: number, b: number) => b - a\n            : (a: number, b: number) => a - b;\n\n        const shiftMap = <T>(map: Map<number, T>) => {\n            const indices = Array.from(map.keys()).filter(filterFn).sort(sortFn);\n            indices.forEach(oldIndex => {\n                const value = map.get(oldIndex);\n                map.delete(oldIndex);\n                map.set(oldIndex + shift, value!);\n            });\n        };\n\n        const shiftSet = (set: Set<number>) => {\n            const indices = Array.from(set).filter(filterFn).sort(sortFn);\n            indices.forEach(oldIndex => {\n                set.delete(oldIndex);\n                set.add(oldIndex + shift);\n            });\n        };\n\n        shiftMap(this.cellOutputs);\n        shiftSet(this.executingCells);\n        shiftSet(this.editingMarkdownCells);\n    }\n\n    private initializeMonacoEditor(container: HTMLElement, cell: NotebookCell, index: number) {\n        const source = this.getCellSource(cell);\n        const lineCount = source.split('\\n').length;\n        const lineHeight = 19;\n        const padding = 10;\n        const minHeight = 100;\n        const calculatedHeight = Math.max(minHeight, lineCount * lineHeight + padding);\n\n        container.style.height = `${calculatedHeight}px`;\n\n        const editor = monaco.editor.create(container, {\n            value: source,\n            language: 'python',\n            theme: this.getMonacoTheme(),\n            minimap: { enabled: false },\n            scrollBeyondLastLine: false,\n            lineNumbers: 'on',\n            renderLineHighlight: 'all',\n            automaticLayout: true,\n            fontSize: 14,\n            tabSize: 4,\n            wordWrap: 'on',\n        });\n\n        let isEditorFocused = false;\n        editor.onDidFocusEditorText(() => { \n            isEditorFocused = true;\n            this.focusedCellIndex = index;\n        });\n        editor.onDidBlurEditorText(() => { \n            isEditorFocused = false;\n            if (this.focusedCellIndex === index) {\n                this.focusedCellIndex = -1;\n            }\n        });\n\n        container.addEventListener('wheel', (e: WheelEvent) => {\n            if (!isEditorFocused) {\n                const scrollTop = editor.getScrollTop();\n                const scrollHeight = editor.getScrollHeight();\n                const contentHeight = editor.getContentHeight();\n                const canScroll = scrollHeight > contentHeight;\n                const atBoundary = (e.deltaY < 0 && scrollTop <= 0) || \n                                 (e.deltaY > 0 && scrollTop + contentHeight >= scrollHeight);\n\n                if (!canScroll || atBoundary) {\n                    e.stopImmediatePropagation();\n                }\n            }\n        }, { passive: true, capture: true });\n\n        editor.onDidContentSizeChange(() => {\n            const contentHeight = editor.getContentHeight();\n            container.style.height = `${Math.max(minHeight, contentHeight + padding)}px`;\n            editor.layout();\n        });\n\n        editor.onDidChangeModelContent(() => {\n            const currentValue = editor.getValue();\n            const originalValue = this.getCellSource(cell);\n            if (currentValue !== originalValue) {\n                this.markDirty(true);\n            }\n        });\n\n        this.monacoEditors.set(index, editor);\n    }\n\n    private getMonacoTheme(): string {\n        const rootElement = document.documentElement;\n        if (rootElement.classList.contains('wa-dark')) {\n            return 'vs-dark';\n        } else if (rootElement.classList.contains('wa-light')) {\n            return 'vs';\n        }\n        return 'vs-dark';\n    }\n\n    private openPackageManager() {\n        const packages = this.notebook?.metadata?.required_packages || [];\n        \n        pythonPackageManagerService.showPackageManager({\n            packages,\n            pyenv: this.pyenv,\n            onPackageAdded: (packageName: string) => {\n                if (!this.notebook) return;\n                if (!this.notebook.metadata) {\n                    this.notebook.metadata = {};\n                }\n                if (!this.notebook.metadata.required_packages) {\n                    this.notebook.metadata.required_packages = [];\n                }\n                \n                if (!this.notebook.metadata.required_packages.includes(packageName)) {\n                    this.notebook.metadata.required_packages.push(packageName);\n                    this.markDirty(true);\n                }\n            },\n            onPackageRemoved: (packageName: string) => {\n                if (!this.notebook?.metadata?.required_packages) return;\n                \n                const index = this.notebook.metadata.required_packages.indexOf(packageName);\n                if (index > -1) {\n                    this.notebook.metadata.required_packages.splice(index, 1);\n                    this.markDirty(true);\n                }\n            }\n        });\n    }\n\n    protected updated(changedProperties: Map<string, any>) {\n        super.updated(changedProperties);\n\n        // Update toolbar when state affecting toolbar changes\n        if (changedProperties.has('pyConnected') || \n            changedProperties.has('pyConnecting') ||\n            changedProperties.has('pyVersion') ||\n            changedProperties.has('isRunningAll')) {\n            this.updateToolbar();\n        }\n\n        if (this.notebook?.cells) {\n            this.notebook.cells.forEach((cell, index) => {\n                if (cell.cell_type === 'code') {\n                    const ref = this.cellRefs.get(index);\n                    if (ref?.value && !this.monacoEditors.has(index)) {\n                        this.initializeMonacoEditor(ref.value, cell, index);\n                    }\n                }\n            });\n        }\n    }\n\n    protected render() {\n        if (!this.notebook) {\n            return html`<div class=\"loading\">Loading notebook...</div>`;\n        }\n\n        return html`\n            <style>\n                ${monacoStyles}\n            </style>\n            <div class=\"noteboocells\">\n                ${repeat(\n                    this.notebook.cells,\n                    (_cell, index) => index,\n                    (cell, index) => this.renderCell(cell, index)\n                )}\n            </div>\n        `;\n    }\n\n    static styles = css`\n        :host {\n            display: block;\n            width: 100%;\n        }\n\n        .python-status {\n            display: flex;\n            align-items: center;\n            gap: 0.5rem;\n        }\n\n        .python-version {\n            font-size: 0.9rem;\n            opacity: 0.8;\n        }\n\n        .noteboocells {\n            display: flex;\n            flex-direction: column;\n            gap: 3rem;\n            max-width: 1200px;\n            margin: 0 auto;\n            padding: 2rem 1rem;\n            width: 100%;\n            box-sizing: border-box;\n        }\n\n        .cell-wrapper {\n            position: relative;\n        }\n\n        .cell {\n            border-radius: 4px;\n            overflow: hidden;\n            opacity: 0.9;\n            position: relative;\n        }\n\n        .cell-header-actions {\n            display: flex;\n            gap: 0.25rem;\n            align-items: center;\n            opacity: 0.5;\n            transition: opacity 0.2s;\n        }\n\n        .cell-header-actions .divider {\n            width: 1px;\n            height: 1rem;\n            background: var(--wa-color-outline);\n            margin: 0 0.25rem;\n            opacity: 0.5;\n        }\n\n        .cell-header:hover .cell-header-actions {\n            opacity: 1;\n        }\n\n        .cell-footer {\n            display: flex;\n            gap: 0.5rem;\n            align-items: center;\n            justify-content: flex-start;\n            padding: 0.5rem;\n            border-top: 1px solid var(--wa-color-outline);\n            opacity: 0.5;\n            transition: opacity 0.2s;\n        }\n\n        .cell-footer:hover {\n            opacity: 1;\n        }\n\n        .markdown-cell {\n            cursor: pointer;\n            transition: opacity 0.2s;\n        }\n\n        .markdown-cell:hover:not(.editing) {\n            opacity: 0.9;\n        }\n        \n        .markdown-cell .cell-content {\n            padding: 1rem;\n        }\n\n        .markdown-cell.editing {\n            cursor: default;\n            padding: 0;\n        }\n        \n        .markdown-cell.editing .cell-actions {\n            display: none;\n        }\n\n        .markdown-editor {\n            width: 100%;\n            min-height: 200px;\n            padding: 1rem;\n            font-family: monospace;\n            font-size: 0.95rem;\n            line-height: 1.6;\n            border: none;\n            outline: none;\n            resize: vertical;\n            background: transparent;\n            color: inherit;\n        }\n\n        .code-cell {\n            border-left: 3px solid var(--wa-color-primary-500);\n            transition: all 0.3s ease;\n        }\n        \n        .code-cell.executing {\n            border-left: 4px solid var(--wa-color-primary-500);\n            box-shadow: 0 0 0 2px var(--wa-color-primary-500, rgba(59, 130, 246, 0.3));\n            animation: pulse-cell 2s ease-in-out infinite;\n        }\n        \n        @keyframes pulse-cell {\n            0%, 100% {\n                box-shadow: 0 0 0 2px var(--wa-color-primary-500, rgba(59, 130, 246, 0.3));\n                opacity: 1;\n            }\n            50% {\n                box-shadow: 0 0 0 4px var(--wa-color-primary-500, rgba(59, 130, 246, 0.5));\n                opacity: 0.95;\n            }\n        }\n\n        .cell-header {\n            display: flex;\n            align-items: center;\n            justify-content: flex-start;\n            gap: 0.5rem;\n            padding: 0.5rem 1rem;\n            flex-wrap: nowrap;\n        }\n\n        .cell-label {\n            font-family: monospace;\n            font-weight: bold;\n            flex-shrink: 0;\n        }\n        \n        .executing-indicator {\n            display: inline-block;\n            color: var(--wa-color-primary-500);\n            font-weight: bold;\n            font-size: 1.2em;\n        }\n\n        .cell-input {\n            margin: 0;\n        }\n\n        .monaco-container {\n            min-height: 100px;\n            height: auto;\n            width: 100%;\n        }\n\n        .cell-output {\n            padding: 1rem;\n        }\n\n        .output-label {\n            font-family: monospace;\n            font-weight: bold;\n            margin-bottom: 0.5rem;\n            opacity: 0.7;\n        }\n\n        .cell-output pre {\n            margin: 0;\n            overflow-x: auto;\n        }\n\n        .cell-output code {\n            font-family: 'Courier New', monospace;\n            font-size: 0.9rem;\n            line-height: 1.5;\n        }\n\n        .output-image {\n            max-width: 100%;\n            height: auto;\n            display: block;\n            margin: 0.5rem 0;\n            border-radius: 4px;\n        }\n\n        .output-error {\n            border-left: 3px solid var(--wa-color-danger-500);\n        }\n\n        .raw-cell {\n            padding: 1rem;\n        }\n\n        .raw-cell pre {\n            margin: 0;\n        }\n\n        .loading {\n            display: flex;\n            align-items: center;\n            justify-content: center;\n            height: 100%;\n            font-size: 1.2rem;\n        }\n\n        .markdown-placeholder {\n            display: flex;\n            align-items: center;\n            justify-content: center;\n            gap: 0.75rem;\n            padding: 3rem 1rem;\n            opacity: 0.5;\n            font-style: italic;\n            transition: opacity 0.2s;\n        }\n\n        .markdown-cell.empty:hover .markdown-placeholder {\n            opacity: 0.8;\n        }\n\n        .markdown-placeholder wa-icon {\n            font-size: 1.5rem;\n        }\n    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package/dist/notebook-runtime.d.ts

@@ -0,0 +1,61 @@
+import { EditorInput, LyraPart } from '@eclipse-lyra/core';
+import { NotebookData, NotebookEditorLike } from './notebook-types';
+export declare class LyraNotebookEditor extends LyraPart implements NotebookEditorLike {
+    input?: EditorInput;
+    notebook?: NotebookData;
+    private cellOutputs;
+    private executingCells;
+    private pyenv?;
+    private pyConnected;
+    private pyConnecting;
+    private pyVersion?;
+    private editingMarkdownCells;
+    private executionCounter;
+    private isRunningAll;
+    private highlightedCellIndex;
+    focusedCellIndex: number;
+    private cancelRunAll;
+    private monacoEditors;
+    private cellRefs;
+    private themeObserver?;
+    protected doClose(): void;
+    save(): Promise<void>;
+    protected doBeforeUI(): void;
+    protected renderToolbar(): import('lit-html').TemplateResult<1>;
+    protected doInitUI(): void;
+    private loadNotebook;
+    private setupThemeObserver;
+    private getCellSource;
+    private convertOutputToJupyter;
+    private convertOutputFromJupyter;
+    private renderHeaderActions;
+    private renderFooterActions;
+    private stringToSourceArray;
+    private createCell;
+    private initPyodide;
+    executeCell(cellIndex: number): Promise<void>;
+    private cancelExecution;
+    private clearAllOutputs;
+    private restartKernel;
+    private runAllCells;
+    private cancelAllCells;
+    private toggleMarkdownEdit;
+    private saveMarkdownEdit;
+    private renderMarkdownCell;
+    private renderCodeCell;
+    private renderCell;
+    private connectPython;
+    private addCell;
+    private scrollToCell;
+    private saveEditorContents;
+    private resetCellState;
+    private deleteCell;
+    private shiftIndices;
+    private initializeMonacoEditor;
+    private getMonacoTheme;
+    private openPackageManager;
+    protected updated(changedProperties: Map<string, any>): void;
+    protected render(): import('lit-html').TemplateResult<1>;
+    static styles: import('lit').CSSResult;
+}
+//# sourceMappingURL=notebook-runtime.d.ts.map

package/dist/notebook-runtime.d.ts.map

@@ -0,0 +1 @@
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package/dist/notebook-types.d.ts

@@ -0,0 +1,23 @@
+export interface NotebookCell {
+    cell_type: 'code' | 'markdown' | 'raw';
+    source: string | string[];
+    outputs?: any[];
+    execution_count?: number | null;
+    metadata?: any;
+}
+export interface NotebookData {
+    cells: NotebookCell[];
+    metadata?: {
+        required_packages?: string[];
+        [key: string]: any;
+    };
+    nbformat?: number;
+    nbformat_minor?: number;
+}
+export interface NotebookEditorLike {
+    notebook?: NotebookData;
+    focusedCellIndex: number;
+    executeCell(index: number): Promise<void>;
+}
+export declare function isNotebookEditorLike(value: unknown): value is NotebookEditorLike;
+//# sourceMappingURL=notebook-types.d.ts.map

package/dist/notebook-types.d.ts.map

@@ -0,0 +1 @@
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package/package.json

@@ -0,0 +1,31 @@
+{
+  "name": "@eclipse-lyra/extension-notebook",
+  "version": "0.0.0",
+  "type": "module",
+  "main": "./dist/index.js",
+  "exports": {
+    ".": {
+      "types": "./dist/index.d.ts",
+      "import": "./dist/index.js"
+    }
+  },
+  "dependencies": {
+    "@eclipse-lyra/core": "*",
+    "@eclipse-lyra/extension-python-runtime": "*",
+    "marked": "^12.0.0 || ^16.4.1",
+    "monaco-editor": "0.55.1"
+  },
+  "devDependencies": {
+    "typescript": "^5.9.3",
+    "vite": "^7.1.12",
+    "vite-plugin-dts": "^4.5.4"
+  },
+  "module": "./dist/index.js",
+  "types": "./dist/index.d.ts",
+  "files": [
+    "dist"
+  ],
+  "scripts": {
+    "build": "vite build"
+  }
+}