@echoes-io/mcp-server 7.1.0 → 8.0.0

package/lib/tools/review-apply.js

@@ -1,7 +1,7 @@
 import { readFile } from 'node:fs/promises';
 import z from 'zod';
 import { DEFAULT_DB_PATH } from '../constants.js';
-import { Database } from '../database/index.js';
+import { createEchoesRAG } from '../rag/index.js';
 export const reviewApplyConfig = {
     name: 'review-apply',
     description: 'Apply corrections from review file to database.',
@@ -12,15 +12,18 @@ export const reviewApplyConfig = {
     },
 };
 export const reviewApplySchema = z.object({
-    file: z.string().describe(reviewApplyConfig.arguments.file),
+    file: z.string().min(1).describe(reviewApplyConfig.arguments.file),
     dryRun: z.boolean().optional().describe(reviewApplyConfig.arguments.dryRun),
     dbPath: z.string().default(DEFAULT_DB_PATH).describe(reviewApplyConfig.arguments.dbPath),
 });
 // Simplified YAML parser for our specific format
+// biome-ignore lint/suspicious/noExplicitAny: dynamic YAML parser for review files
 function parseYaml(content) {
     const lines = content.split('\n').filter((line) => !line.trim().startsWith('#') && line.trim());
+    // biome-ignore lint/suspicious/noExplicitAny: dynamic structure
     const result = {};
     let currentSection = '';
+    // biome-ignore lint/suspicious/noExplicitAny: dynamic structure
     let currentItem = null;
     let inAdditions = false;
     for (const line of lines) {
@@ -40,33 +43,25 @@ function parseYaml(content) {
         }
         if (trimmed.startsWith('- ')) {
             currentItem = {};
-            if (inAdditions) {
-                // Handle additions section
-                continue;
-            }
-            else {
+            if (!inAdditions)
                 result[currentSection].push(currentItem);
-            }
+            continue;
         }
         if (trimmed.includes(': ') && currentItem) {
             const [key, ...valueParts] = trimmed.split(': ');
             const value = valueParts.join(': ').replace(/^"(.*)"$/, '$1');
             const cleanKey = key.replace(/^\s*/, '');
             if (cleanKey === 'aliases' || cleanKey === 'chapters') {
-                // Parse array format: [item1, item2]
                 const arrayMatch = value.match(/\[(.*)\]/);
-                if (arrayMatch) {
-                    currentItem[cleanKey] = arrayMatch[1]
+                currentItem[cleanKey] = arrayMatch
+                    ? arrayMatch[1]
                         .split(',')
                         .map((item) => item.trim().replace(/^"(.*)"$/, '$1'))
-                        .filter((item) => item);
-                }
-                else {
-                    currentItem[cleanKey] = [];
-                }
+                        .filter(Boolean)
+                    : [];
             }
             else if (cleanKey === 'weight') {
-                currentItem[cleanKey] = parseFloat(value);
+                currentItem[cleanKey] = Number.parseFloat(value);
             }
             else {
                 currentItem[cleanKey] = value;
@@ -78,11 +73,12 @@ function parseYaml(content) {
 export async function reviewApply(input) {
     const { file, dbPath } = reviewApplySchema.parse(input);
     const dryRun = input.dryRun ?? false;
-    // Read and parse YAML file
     const content = await readFile(file, 'utf8');
     const reviewData = parseYaml(content);
-    const db = new Database(dbPath);
-    await db.connect();
+    // Extract arc from first entity ID or metadata
+    const firstEntityId = reviewData.entities?.[0]?.id || '';
+    const arc = firstEntityId.split(':')[0] || reviewData.metadata?.arc || 'unknown';
+    const { storage } = createEchoesRAG({ dbPath, arc });
     const result = {
         preview: dryRun,
         changes: {
@@ -91,215 +87,61 @@ export async function reviewApply(input) {
         },
         details: [],
     };
-    // Process entities
     if (reviewData.entities) {
         for (const entity of reviewData.entities) {
             const status = entity._correction ? 'modified' : entity.status;
-            if (status === 'approved') {
-                result.changes.entities.approved++;
-                result.details.push(`✅ Entity approved: ${entity.name}`);
-                if (!dryRun) {
-                    await db.upsertEntities([
-                        {
-                            id: entity.id,
-                            arc: entity.id.split(':')[0],
-                            name: entity.name,
-                            type: entity.type,
-                            description: entity.description,
-                            aliases: entity.aliases || [],
-                            vector: Array(384).fill(0), // Placeholder
-                            chapters: [],
-                            chapter_count: 0,
-                            first_appearance: '',
-                            indexed_at: Date.now(),
-                            review_status: 'approved',
-                            reviewed_at: Date.now(),
-                            original_extraction: null,
-                        },
-                    ]);
-                }
-            }
-            else if (status === 'modified') {
-                result.changes.entities.modified++;
-                const correction = entity._correction || {};
-                result.details.push(`✏️ Entity modified: ${entity.name} (${Object.keys(correction).join(', ')})`);
+            const correction = entity._correction || {};
+            if (status === 'approved' || status === 'modified' || status === 'rejected') {
+                result.changes.entities[status]++;
+                const icon = status === 'approved' ? '✅' : status === 'modified' ? '✏️' : '❌';
+                const suffix = status === 'modified' ? ` (${Object.keys(correction).join(', ')})` : '';
+                result.details.push(`${icon} Entity ${status}: ${entity.name}${suffix}`);
                 if (!dryRun) {
-                    await db.upsertEntities([
-                        {
-                            id: entity.id,
-                            arc: entity.id.split(':')[0],
-                            name: entity.name,
-                            type: entity.type,
-                            description: correction.description || entity.description,
+                    await storage.graph.addEntity({
+                        id: entity.id,
+                        name: entity.name,
+                        type: entity.type,
+                        description: correction.description || entity.description,
+                        sourceChunkIds: [],
+                        fields: {
                             aliases: correction.aliases || entity.aliases || [],
-                            vector: Array(384).fill(0), // Placeholder
-                            chapters: [],
-                            chapter_count: 0,
-                            first_appearance: '',
-                            indexed_at: Date.now(),
-                            review_status: 'modified',
-                            reviewed_at: Date.now(),
-                            original_extraction: JSON.stringify(entity),
-                        },
-                    ]);
-                }
-            }
-            else if (status === 'rejected') {
-                result.changes.entities.rejected++;
-                result.details.push(`❌ Entity rejected: ${entity.name}`);
-                // Note: In a full implementation, we might delete or mark as rejected
-                if (!dryRun) {
-                    await db.upsertEntities([
-                        {
-                            id: entity.id,
-                            arc: entity.id.split(':')[0],
-                            name: entity.name,
-                            type: entity.type,
-                            description: entity.description,
-                            aliases: entity.aliases || [],
-                            vector: Array(384).fill(0), // Placeholder
-                            chapters: [],
-                            chapter_count: 0,
-                            first_appearance: '',
-                            indexed_at: Date.now(),
-                            review_status: 'rejected',
+                            review_status: status,
                             reviewed_at: Date.now(),
-                            original_extraction: null,
+                            ...(status === 'modified' ? { original_extraction: JSON.stringify(entity) } : {}),
                         },
-                    ]);
+                    });
                 }
             }
         }
     }
-    // Process relations
     if (reviewData.relations) {
         for (const relation of reviewData.relations) {
             const status = relation._correction ? 'modified' : relation.status;
-            if (status === 'approved') {
-                result.changes.relations.approved++;
-                result.details.push(`✅ Relation approved: ${relation.source} → ${relation.type} → ${relation.target}`);
+            const correction = relation._correction || {};
+            if (status === 'approved' || status === 'modified' || status === 'rejected') {
+                result.changes.relations[status]++;
+                const icon = status === 'approved' ? '✅' : status === 'modified' ? '✏️' : '❌';
+                result.details.push(`${icon} Relation ${status}: ${relation.source} → ${relation.type} → ${relation.target}`);
                 if (!dryRun) {
-                    await db.upsertRelations([
-                        {
-                            id: relation.id,
-                            arc: relation.id.split(':')[0],
-                            source_entity: `${relation.id.split(':')[0]}:CHARACTER:${relation.source}`,
-                            target_entity: `${relation.id.split(':')[0]}:CHARACTER:${relation.target}`,
-                            type: relation.type,
-                            description: relation.description,
-                            weight: relation.weight,
-                            chapters: relation.chapters || [],
-                            indexed_at: Date.now(),
-                            review_status: 'approved',
-                            reviewed_at: Date.now(),
-                            original_extraction: null,
-                        },
-                    ]);
-                }
-            }
-            else if (status === 'modified') {
-                result.changes.relations.modified++;
-                const correction = relation._correction || {};
-                result.details.push(`✏️ Relation modified: ${relation.source} → ${relation.type} → ${relation.target}`);
-                if (!dryRun) {
-                    await db.upsertRelations([
-                        {
-                            id: relation.id,
-                            arc: relation.id.split(':')[0],
-                            source_entity: `${relation.id.split(':')[0]}:CHARACTER:${relation.source}`,
-                            target_entity: `${relation.id.split(':')[0]}:CHARACTER:${relation.target}`,
-                            type: (correction.type || relation.type),
-                            description: correction.description || relation.description,
+                    await storage.graph.addRelation({
+                        id: relation.id,
+                        sourceId: `CHARACTER:${relation.source}`,
+                        targetId: `CHARACTER:${relation.target}`,
+                        type: correction.type || relation.type,
+                        description: correction.description || relation.description,
+                        keywords: [],
+                        sourceChunkIds: correction.chapters || relation.chapters || [],
+                        fields: {
                             weight: correction.weight || relation.weight,
-                            chapters: correction.chapters || relation.chapters || [],
-                            indexed_at: Date.now(),
-                            review_status: 'modified',
-                            reviewed_at: Date.now(),
-                            original_extraction: JSON.stringify(relation),
-                        },
-                    ]);
-                }
-            }
-            else if (status === 'rejected') {
-                result.changes.relations.rejected++;
-                result.details.push(`❌ Relation rejected: ${relation.source} → ${relation.type} → ${relation.target}`);
-                if (!dryRun) {
-                    await db.upsertRelations([
-                        {
-                            id: relation.id,
-                            arc: relation.id.split(':')[0],
-                            source_entity: `${relation.id.split(':')[0]}:CHARACTER:${relation.source}`,
-                            target_entity: `${relation.id.split(':')[0]}:CHARACTER:${relation.target}`,
-                            type: relation.type,
-                            description: relation.description,
-                            weight: relation.weight,
-                            chapters: relation.chapters || [],
-                            indexed_at: Date.now(),
-                            review_status: 'rejected',
-                            reviewed_at: Date.now(),
-                            original_extraction: null,
-                        },
-                    ]);
-                }
-            }
-        }
-    }
-    // Process additions
-    if (reviewData.additions) {
-        if (reviewData.additions.entities) {
-            for (const entity of reviewData.additions.entities) {
-                result.changes.entities.added++;
-                result.details.push(`➕ Entity added: ${entity.name}`);
-                if (!dryRun) {
-                    const arc = reviewData.metadata?.arc || 'unknown';
-                    await db.upsertEntities([
-                        {
-                            id: `${arc}:${entity.type.toUpperCase()}:${entity.name}`,
-                            arc,
-                            name: entity.name,
-                            type: entity.type,
-                            description: entity.description,
-                            aliases: entity.aliases || [],
-                            vector: Array(384).fill(0), // Placeholder
-                            chapters: [],
-                            chapter_count: 0,
-                            first_appearance: '',
-                            indexed_at: Date.now(),
-                            review_status: 'approved',
-                            reviewed_at: Date.now(),
-                            original_extraction: null,
-                        },
-                    ]);
-                }
-            }
-        }
-        if (reviewData.additions.relations) {
-            for (const relation of reviewData.additions.relations) {
-                result.changes.relations.added++;
-                result.details.push(`➕ Relation added: ${relation.source} → ${relation.type} → ${relation.target}`);
-                if (!dryRun) {
-                    const arc = reviewData.metadata?.arc || 'unknown';
-                    await db.upsertRelations([
-                        {
-                            id: `${arc}:${relation.source}:${relation.type}:${relation.target}`,
-                            arc,
-                            source_entity: `${arc}:CHARACTER:${relation.source}`,
-                            target_entity: `${arc}:CHARACTER:${relation.target}`,
-                            type: relation.type,
-                            description: relation.description,
-                            weight: 0.8,
-                            chapters: relation.chapters || [],
-                            indexed_at: Date.now(),
-                            review_status: 'approved',
+                            review_status: status,
                             reviewed_at: Date.now(),
-                            original_extraction: null,
+                            ...(status === 'modified' ? { original_extraction: JSON.stringify(relation) } : {}),
                         },
-                    ]);
+                    });
                 }
             }
         }
     }
-    db.close();
     return result;
 }
 //# sourceMappingURL=review-apply.js.map

package/lib/tools/review-apply.js.map

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package/lib/tools/review-generate.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"review-generate.d.ts","sourceRoot":"","sources":["review-generate.ts"],"names":[],"mappings":"AAAA,OAAO,CAAC,MAAM,KAAK,CAAC;AAIpB,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAE9C,eAAO,MAAM,oBAAoB,EAAE,UASlC,CAAC;AAEF,eAAO,MAAM,oBAAoB;;;;;;;;mBAK/B,CAAC;AAEH,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,oBAAoB,CAAC,CAAC;AAqGvE,wBAAsB,cAAc,CAClC,KAAK,EAAE,mBAAmB,GACzB,OAAO,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,CAAA;CAAE,CAAC,CAgE5F"}
+{"version":3,"file":"review-generate.d.ts","sourceRoot":"","sources":["review-generate.ts"],"names":[],"mappings":"AAAA,OAAO,CAAC,MAAM,KAAK,CAAC;AAIpB,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAE9C,eAAO,MAAM,oBAAoB,EAAE,UASlC,CAAC;AAEF,eAAO,MAAM,oBAAoB;;;;;;;;mBAK/B,CAAC;AAEH,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,oBAAoB,CAAC,CAAC;AAgFvE,wBAAsB,cAAc,CAClC,KAAK,EAAE,mBAAmB,GACzB,OAAO,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,CAAA;CAAE,CAAC,CAwD5F"}

package/lib/tools/review-generate.js

@@ -1,6 +1,6 @@
 import z from 'zod';
 import { DEFAULT_DB_PATH } from '../constants.js';
-import { Database } from '../database/index.js';
+import { createEchoesRAG } from '../rag/index.js';
 export const reviewGenerateConfig = {
     name: 'review-generate',
     description: 'Generate review file for pending entity/relation extractions.',
@@ -19,105 +19,94 @@ export const reviewGenerateSchema = z.object({
 });
 function toYaml(obj) {
     const lines = [];
-    // Metadata
     lines.push('# Generated by echoes-mcp-server');
     lines.push(`# Arc: ${obj.metadata.arc}`);
     lines.push(`# Generated at: ${obj.metadata.generated_at}`);
     lines.push('');
-    // Entities
     lines.push('entities:');
     if (obj.entities.length === 0) {
         lines.push('  []');
     }
     else {
-        for (const entity of obj.entities) {
-            lines.push(`  - id: "${entity.id}"`);
-            lines.push(`    name: "${entity.name}"`);
-            lines.push(`    type: "${entity.type}"`);
-            lines.push(`    description: "${entity.description}"`);
-            const aliases = Array.isArray(entity.aliases) ? entity.aliases : [];
-            lines.push(`    aliases: [${aliases.map((a) => `"${a}"`).join(', ')}]`);
-            lines.push(`    status: ${entity.status}`);
+        for (const e of obj.entities) {
+            lines.push(`  - id: "${e.id}"`);
+            lines.push(`    name: "${e.name}"`);
+            lines.push(`    type: "${e.type}"`);
+            lines.push(`    description: "${e.description}"`);
+            lines.push(`    aliases: [${e.aliases.map((a) => `"${a}"`).join(', ')}]`);
+            lines.push(`    status: ${e.status}`);
             lines.push('');
         }
     }
-    // Relations
     lines.push('relations:');
     if (obj.relations.length === 0) {
         lines.push('  []');
     }
     else {
-        for (const relation of obj.relations) {
-            lines.push(`  - id: "${relation.id}"`);
-            lines.push(`    source: "${relation.source}"`);
-            lines.push(`    target: "${relation.target}"`);
-            lines.push(`    type: "${relation.type}"`);
-            lines.push(`    description: "${relation.description}"`);
-            lines.push(`    weight: ${relation.weight}`);
-            const chapters = Array.isArray(relation.chapters) ? relation.chapters : [];
-            lines.push(`    chapters: [${chapters.map((c) => `"${c}"`).join(', ')}]`);
-            lines.push(`    status: ${relation.status}`);
+        for (const r of obj.relations) {
+            lines.push(`  - id: "${r.id}"`);
+            lines.push(`    source: "${r.source}"`);
+            lines.push(`    target: "${r.target}"`);
+            lines.push(`    type: "${r.type}"`);
+            lines.push(`    description: "${r.description}"`);
+            lines.push(`    weight: ${r.weight}`);
+            lines.push(`    chapters: [${r.chapters.map((c) => `"${c}"`).join(', ')}]`);
+            lines.push(`    status: ${r.status}`);
             lines.push('');
         }
     }
-    // Additions template
     lines.push('# Add new entities/relations below:');
     lines.push('additions:');
     lines.push('  entities: []');
     lines.push('  relations: []');
     return lines.join('\n');
 }
+function isPending(fields) {
+    return !fields?.review_status || fields.review_status === 'pending';
+}
 export async function reviewGenerate(input) {
     const { arc, dbPath } = reviewGenerateSchema.parse(input);
     const output = input.output || '.echoes-review.yaml';
     const filter = input.filter || 'pending';
-    const db = new Database(dbPath);
-    await db.connect();
-    // Get entities and relations
-    const entities = await db.getEntities(arc);
-    const relations = await db.getRelations(arc);
-    db.close();
-    // Filter by review status
-    const filteredEntities = entities.filter((e) => filter === 'all' || e.review_status === 'pending' || !e.review_status);
-    const filteredRelations = relations.filter((r) => filter === 'all' || r.review_status === 'pending' || !r.review_status);
-    // Build review file
+    const { storage } = createEchoesRAG({ dbPath, arc });
+    const allEntities = await storage.graph.getEntities();
+    const filteredEntities = allEntities.filter((e) => filter === 'all' || isPending(e.fields));
+    const allRelations = [];
+    const seen = new Set();
+    for (const e of allEntities) {
+        for (const r of await storage.graph.getRelations(e.id, 'out')) {
+            if (seen.has(r.id))
+                continue;
+            seen.add(r.id);
+            allRelations.push(r);
+        }
+    }
+    const filteredRelations = allRelations.filter((r) => filter === 'all' || isPending(r.fields));
     const reviewFile = {
-        metadata: {
-            arc,
-            generated_at: new Date().toISOString(),
-            generated_by: 'echoes-mcp-server',
-        },
+        metadata: { arc, generated_at: new Date().toISOString(), generated_by: 'echoes-mcp-server' },
         entities: filteredEntities.map((e) => ({
             id: e.id,
             name: e.name,
             type: e.type,
             description: e.description,
-            aliases: e.aliases,
-            status: e.review_status || 'pending',
+            aliases: e.fields?.aliases || [],
+            status: e.fields?.review_status || 'pending',
         })),
         relations: filteredRelations.map((r) => ({
             id: r.id,
-            source: r.source_entity.split(':').pop() || '',
-            target: r.target_entity.split(':').pop() || '',
+            source: r.sourceId.split(':').pop() || '',
+            target: r.targetId.split(':').pop() || '',
             type: r.type,
             description: r.description,
-            weight: r.weight,
-            chapters: r.chapters,
-            status: r.review_status || 'pending',
+            weight: Number(r.fields?.weight ?? 0.5),
+            chapters: r.sourceChunkIds,
+            status: r.fields?.review_status || 'pending',
         })),
-        additions: {
-            entities: [],
-            relations: [],
-        },
     };
-    const content = toYaml(reviewFile);
     return {
         file: output,
-        content,
-        stats: {
-            entities: reviewFile.entities.length,
-            relations: reviewFile.relations.length,
-        },
+        content: toYaml(reviewFile),
+        stats: { entities: reviewFile.entities.length, relations: reviewFile.relations.length },
     };
 }
 //# sourceMappingURL=review-generate.js.map

package/lib/tools/review-generate.js.map

@@ -1 +1 @@
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package/lib/tools/review-status.d.ts

@@ -6,23 +6,18 @@ export declare const reviewStatusSchema: z.ZodObject<{
     dbPath: z.ZodDefault<z.ZodString>;
 }, z.z.core.$strip>;
 export type ReviewStatusInput = z.infer<typeof reviewStatusSchema>;
-interface ReviewStats {
-    arc: string;
-    entities: {
-        pending: number;
-        approved: number;
-        rejected: number;
-        modified: number;
-        total: number;
-    };
-    relations: {
-        pending: number;
-        approved: number;
-        rejected: number;
-        modified: number;
-        total: number;
-    };
+interface StatusCounts {
+    [key: string]: number;
+    pending: number;
+    approved: number;
+    rejected: number;
+    modified: number;
+    total: number;
 }
-export declare function reviewStatus(input: ReviewStatusInput): Promise<ReviewStats>;
+export declare function reviewStatus(input: ReviewStatusInput): Promise<{
+    arc: string;
+    entities: StatusCounts;
+    relations: StatusCounts;
+}>;
 export {};
 //# sourceMappingURL=review-status.d.ts.map

package/lib/tools/review-status.d.ts.map

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