@earthyscience/netcdf4-wasm 0.1.0 → 0.1.1

package/dist/netcdf-getters.d.ts

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+import type { NetCDF4Module } from './types.js';
+export declare function getVariables(module: NetCDF4Module, ncid: number): Record<string, any>;
+export declare function getVarCount(module: NetCDF4Module, ncid: number): number;
+export declare function getDimCount(module: NetCDF4Module, ncid: number): number;
+export declare function getDims(module: NetCDF4Module, ncid: number): Record<string, any>;
+export declare function getDimIDs(module: NetCDF4Module, ncid: number): number[] | Int32Array;
+export declare function getDim(module: NetCDF4Module, ncid: number, dimid: number): Record<string, any>;
+export declare function getAttributeValues(module: NetCDF4Module, ncid: number, varid: number, attname: string): any;
+export declare function getGlobalAttributes(module: NetCDF4Module, ncid: number): Record<string, any>;
+export declare function getAttributeName(module: NetCDF4Module, ncid: number, varid: number, attId: number): string | undefined;
+export declare function getFullMetadata(module: NetCDF4Module, ncid: number): Record<string, any>[];
+export declare function getVarIDs(module: NetCDF4Module, ncid: number): number[] | Int32Array;
+export declare function getVariableInfo(module: NetCDF4Module, ncid: number, variable: number | string): Record<string, any>;
+export declare function getVariableArray(module: NetCDF4Module, ncid: number, variable: number | string): Float32Array | Float64Array | Int16Array | Int32Array | BigInt64Array | BigInt[] | string[];
+export declare function getSlicedVariableArray(module: NetCDF4Module, ncid: number, variable: number | string, start: number[], count: number[]): Float32Array | Float64Array | Int16Array | Int32Array | BigInt64Array | BigInt[] | string[];
+//# sourceMappingURL=netcdf-getters.d.ts.map

package/dist/netcdf-getters.d.ts.map

@@ -0,0 +1 @@
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package/dist/netcdf-getters.js

@@ -0,0 +1,263 @@
+import { NC_CONSTANTS, DATA_TYPE_SIZE, CONSTANT_DTYPE_MAP } from './constants.js';
+export function getVariables(module, ncid) {
+    const variables = {};
+    const varCount = getVarCount(module, ncid);
+    const dimIds = getDimIDs(module, ncid);
+    for (let varid = 0; varid < varCount; varid++) {
+        if (dimIds.includes(varid))
+            continue; //Don't include spatial Vars
+        const result = module.nc_inq_varname(ncid, varid);
+        if (result.result !== NC_CONSTANTS.NC_NOERR || !result.name) {
+            console.warn(`Failed to get variable name for varid ${varid} (error: ${result.result})`);
+            continue;
+        }
+        variables[result.name] = {
+            id: varid
+        };
+    }
+    return variables;
+}
+export function getVarCount(module, ncid) {
+    const result = module.nc_inq_nvars(ncid);
+    if (result.result !== NC_CONSTANTS.NC_NOERR) {
+        throw new Error(`Failed to get number of variables (error: ${result.result})`);
+    }
+    return result.nvars || 0;
+}
+export function getDimCount(module, ncid) {
+    const result = module.nc_inq_ndims(ncid);
+    if (result.result !== NC_CONSTANTS.NC_NOERR) {
+        throw new Error(`Failed to get number of dimensions (error: ${result.result})`);
+    }
+    return result.ndims || 0;
+}
+export function getDims(module, ncid) {
+    const dimIDs = getDimIDs(module, ncid);
+    const dims = {};
+    for (const dimid of dimIDs) {
+        const dim = getDim(module, ncid, dimid);
+        dims[dim.name] = {
+            size: dim.len,
+            units: dim.units,
+            id: dim.id
+        };
+    }
+    return dims;
+}
+export function getDimIDs(module, ncid) {
+    const result = module.nc_inq_dimids(ncid, 0);
+    if (result.result !== NC_CONSTANTS.NC_NOERR) {
+        throw new Error(`Failed to get dimension IDs (error: ${result.result})`);
+    }
+    return result.dimids || [0];
+}
+export function getDim(module, ncid, dimid) {
+    const result = module.nc_inq_dim(ncid, dimid);
+    if (result.result !== NC_CONSTANTS.NC_NOERR) {
+        throw new Error(`Failed to get dim (error: ${result.result})`);
+    }
+    const varResult = module.nc_inq_varid(ncid, result.name);
+    const varID = varResult.varid;
+    const { result: output, ...dim } = result;
+    const unitResult = getAttributeValues(module, ncid, varID, "units");
+    return { ...dim, units: unitResult, id: varID };
+}
+export function getAttributeValues(module, ncid, varid, attname) {
+    const attInfo = module.nc_inq_att(ncid, varid, attname);
+    if (attInfo.result !== NC_CONSTANTS.NC_NOERR) {
+        console.warn(`Failed to get attribute info for ${attname} (error: ${attInfo.result})`);
+        return;
+    }
+    const attType = attInfo.type;
+    if (!attType)
+        throw new Error("Failed to allocate memory for attribute type.");
+    let attValue;
+    if (attType === 2)
+        attValue = module.nc_get_att_text(ncid, varid, attname, attInfo.len);
+    else if (attType === 3)
+        attValue = module.nc_get_att_short(ncid, varid, attname, attInfo.len);
+    else if (attType === 4)
+        attValue = module.nc_get_att_int(ncid, varid, attname, attInfo.len);
+    else if (attType === 5)
+        attValue = module.nc_get_att_float(ncid, varid, attname, attInfo.len);
+    else if (attType === 6)
+        attValue = module.nc_get_att_double(ncid, varid, attname, attInfo.len);
+    else if (attType === 10)
+        attValue = module.nc_get_att_longlong(ncid, varid, attname, attInfo.len);
+    else
+        attValue = module.nc_get_att_double(ncid, varid, attname, attInfo.len);
+    return attValue.data;
+}
+export function getGlobalAttributes(module, ncid) {
+    const attributes = {};
+    const nattsResult = module.nc_inq_natts(ncid);
+    if (nattsResult.result !== NC_CONSTANTS.NC_NOERR) {
+        throw new Error(`Failed to get number of global attributes (error: ${nattsResult.result})`);
+    }
+    const nAtts = nattsResult.natts;
+    const attNames = [];
+    for (let i = 0; i < nAtts; i++) {
+        const name = getAttributeName(module, ncid, NC_CONSTANTS.NC_GLOBAL, i);
+        attNames.push(name);
+    }
+    if (attNames.length === 0)
+        return attributes;
+    for (const attname of attNames) {
+        if (!attname)
+            continue;
+        attributes[attname] = getAttributeValues(module, ncid, NC_CONSTANTS.NC_GLOBAL, attname);
+    }
+    return attributes;
+}
+export function getAttributeName(module, ncid, varid, attId) {
+    const result = module.nc_inq_attname(ncid, varid, attId);
+    if (result.result !== NC_CONSTANTS.NC_NOERR) {
+        throw new Error(`Failed to get attribute (error: ${result.result})`);
+    }
+    return result.name;
+}
+export function getFullMetadata(module, ncid) {
+    const varIds = getVarIDs(module, ncid);
+    const metas = [];
+    for (const varid of varIds) {
+        const varMeta = getVariableInfo(module, ncid, varid);
+        const { attributes, ...varDeets } = varMeta;
+        metas.push({ ...varDeets, ...attributes });
+    }
+    return metas;
+}
+export function getVarIDs(module, ncid) {
+    const result = module.nc_inq_varids(ncid);
+    if (result.result !== NC_CONSTANTS.NC_NOERR) {
+        throw new Error(`Failed to get variable IDs (error: ${result.result})`);
+    }
+    return result.varids || [0];
+}
+export function getVariableInfo(module, ncid, variable) {
+    const info = {};
+    const isId = typeof variable === "number";
+    let varid = variable;
+    if (!isId) {
+        const result = module.nc_inq_varid(ncid, variable);
+        varid = result.varid;
+    }
+    const result = module.nc_inq_var(ncid, varid);
+    if (result.result !== NC_CONSTANTS.NC_NOERR) {
+        throw new Error(`Failed to get variable info (error: ${result.result})`);
+    }
+    const typeMultiplier = DATA_TYPE_SIZE[result.type];
+    //Dim Info
+    const dimids = result.dimids;
+    const dims = [];
+    const shape = [];
+    let size = 1;
+    if (dimids) {
+        for (const dimid of dimids) {
+            const dim = getDim(module, ncid, dimid);
+            size *= dim.len;
+            dims.push(dim);
+            shape.push(dim.len);
+        }
+    }
+    //Attribute Info
+    const attNames = [];
+    if (result.natts) {
+        for (let i = 0; i < result.natts; i++) {
+            const attname = getAttributeName(module, ncid, varid, i);
+            attNames.push(attname);
+        }
+    }
+    const atts = {};
+    if (attNames.length > 0) {
+        for (const attname of attNames) {
+            if (!attname)
+                continue;
+            atts[attname] = getAttributeValues(module, ncid, varid, attname);
+        }
+    }
+    //Chunking Info
+    let chunks;
+    const chunkResult = module.nc_inq_var_chunking(ncid, varid);
+    const isChunked = chunkResult.chunking === NC_CONSTANTS.NC_CHUNKED;
+    if (isChunked) {
+        chunks = chunkResult.chunkSizes;
+    }
+    else {
+        chunks = shape;
+    }
+    const chunkElements = chunks.reduce((a, b) => a * b, 1);
+    //Output 
+    info["name"] = result.name;
+    info["dtype"] = CONSTANT_DTYPE_MAP[result.type];
+    info['nctype'] = result.type;
+    info["shape"] = shape;
+    info['dims'] = dims;
+    info["size"] = size;
+    info["totalSize"] = size * typeMultiplier;
+    info["attributes"] = atts;
+    info["chunked"] = isChunked;
+    info["chunks"] = chunks;
+    info["chunkSize"] = chunkElements * typeMultiplier;
+    return info;
+}
+export function getVariableArray(module, ncid, variable) {
+    const isId = typeof variable === "number";
+    let varid = isId ? variable : 0;
+    if (!isId) {
+        const result = module.nc_inq_varid(ncid, variable);
+        varid = result.varid;
+    }
+    const info = getVariableInfo(module, ncid, varid);
+    const arraySize = info.size;
+    const arrayType = info.nctype;
+    if (!arrayType || !arraySize)
+        throw new Error("Failed to allocate memory for array");
+    let arrayData;
+    if (arrayType === 2)
+        arrayData = module.nc_get_var_text(ncid, varid, arraySize);
+    else if (arrayType === 3)
+        arrayData = module.nc_get_var_short(ncid, varid, arraySize);
+    else if (arrayType === 4)
+        arrayData = module.nc_get_var_int(ncid, varid, arraySize);
+    else if (arrayType === 10)
+        arrayData = module.nc_get_var_longlong(ncid, varid, arraySize);
+    else if (arrayType === 5)
+        arrayData = module.nc_get_var_float(ncid, varid, arraySize);
+    else if (arrayType === 6)
+        arrayData = module.nc_get_var_double(ncid, varid, arraySize);
+    else
+        arrayData = module.nc_get_var_double(ncid, varid, arraySize);
+    if (!arrayData.data)
+        throw new Error("Failed to read array data");
+    return arrayData.data;
+}
+export function getSlicedVariableArray(module, ncid, variable, start, count) {
+    const isId = typeof variable === "number";
+    let varid = isId ? variable : 0;
+    if (!isId) {
+        const result = module.nc_inq_varid(ncid, variable);
+        varid = result.varid;
+    }
+    const info = getVariableInfo(module, ncid, varid);
+    const arrayType = info.nctype;
+    if (!arrayType)
+        throw new Error("Failed to allocate memory for array");
+    let arrayData;
+    if (arrayType === 3)
+        arrayData = module.nc_get_vara_short(ncid, varid, start, count);
+    else if (arrayType === 4)
+        arrayData = module.nc_get_vara_int(ncid, varid, start, count);
+    else if (arrayType === 5)
+        arrayData = module.nc_get_vara_float(ncid, varid, start, count);
+    else if (arrayType === 6)
+        arrayData = module.nc_get_vara_double(ncid, varid, start, count);
+    else
+        arrayData = module.nc_get_vara_double(ncid, varid, start, count);
+    if (!arrayData.data) {
+        console.log(arrayData);
+        throw new Error("Failed to read array data");
+    }
+    return arrayData.data;
+}
+//    if (!module) throw new Error("Failed to load module. Ensure module is initialized before calling methods")
+//# sourceMappingURL=netcdf-getters.js.map

package/dist/netcdf-getters.js.map

@@ -0,0 +1 @@
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package/dist/netcdf-worker.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=netcdf-worker.d.ts.map

package/dist/netcdf-worker.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"netcdf-worker.d.ts","sourceRoot":"","sources":["../src/netcdf-worker.ts"],"names":[],"mappings":""}

package/dist/netcdf-worker.js

@@ -0,0 +1,149 @@
+import * as NCGet from './netcdf-getters.js';
+import { WasmModuleLoader } from "./wasm-module.js";
+import { NC_CONSTANTS } from "./constants.js";
+let netcdfModule;
+let mod;
+// Wait for runtime initialization
+const waitForModule = new Promise(async (resolve) => {
+    // Dynamically import the generated netcdf4-wasm.js module
+    const netcdf4Module = await import('./netcdf4-wasm.js');
+    const createNetCDF4Module = netcdf4Module.default;
+    // Use the imported module factory
+    netcdfModule = await createNetCDF4Module({
+        locateFile: (file) => {
+            // This handles Next.js bundling which adds identifiers to the filename
+            if (file.endsWith('.wasm')) {
+                return `${self.location.origin}/${file}`;
+            }
+            return file;
+        }
+    });
+    resolve(netcdfModule);
+});
+// @ts-ignore: onmessage is available in worker global scope
+self.onmessage = async (e) => {
+    const data = e.data;
+    const { type, id } = data;
+    try {
+        // Handle init message separately (before wrapping)
+        if (type === 'init') {
+            const rawmod = await waitForModule;
+            mod = WasmModuleLoader.wrapModule(rawmod);
+            const { blob, filename } = data;
+            const pathParts = filename.split('/');
+            const baseName = pathParts.pop(); // "data.nc"
+            const mountPoint = pathParts.join('/') || '/'; // "/working"
+            try {
+                mod.FS.mkdir(mountPoint);
+            }
+            catch (e) { /* ignore if exists */ }
+            try {
+                mod.FS.mount(mod.WORKERFS, {
+                    blobs: [{ name: baseName, data: blob }],
+                }, mountPoint);
+            }
+            catch (err) {
+                console.warn("Mount failed (might already be mounted):", err.message);
+            }
+            // Send success response matching what initHandler expects
+            self.postMessage({ success: true });
+            return;
+        }
+        // For all other operations, ensure mod is initialized
+        if (!mod) {
+            const rawmod = await waitForModule;
+            mod = WasmModuleLoader.wrapModule(rawmod);
+        }
+        let result;
+        switch (type) {
+            case 'open': {
+                const openResult = mod.nc_open(data.path, data.modeValue);
+                const ncid = openResult.ncid ?? -1;
+                if (ncid < 0) {
+                    throw new Error('nc_open failed with code ' + ncid);
+                }
+                result = ncid;
+                console.log('Worker: Returning ncid:', result);
+                break;
+            }
+            case 'close': {
+                const closeResult = mod.nc_close(data.ncid);
+                if (closeResult !== NC_CONSTANTS.NC_NOERR) {
+                    throw new Error("Failed to close file");
+                }
+                result = closeResult;
+                break;
+            }
+            //---- Getters ----//
+            //Globals
+            case 'getGlobalAttributes': {
+                result = NCGet.getGlobalAttributes(mod, data.ncid);
+                break;
+            }
+            case 'getFullMetadata': {
+                result = NCGet.getFullMetadata(mod, data.ncid);
+                break;
+            }
+            //Dims
+            case 'getDimCount': {
+                result = NCGet.getDimCount(mod, data.ncid);
+                break;
+            }
+            case 'getDimIDs': {
+                result = Array.from(NCGet.getDimIDs(mod, data.ncid));
+                break;
+            }
+            case 'getDim': {
+                result = NCGet.getDim(mod, data.ncid, data.dimid);
+                break;
+            }
+            case 'getDims': {
+                result = NCGet.getDims(mod, data.ncid);
+                break;
+            }
+            //Vars
+            case 'getVariables': {
+                console.log('Worker: getVariables called with ncid:', data.ncid);
+                result = NCGet.getVariables(mod, data.ncid);
+                break;
+            }
+            case 'getVarIDs': {
+                result = Array.from(NCGet.getVarIDs(mod, data.ncid));
+                break;
+            }
+            case 'getVarCount': {
+                result = NCGet.getVarCount(mod, data.ncid);
+                break;
+            }
+            case 'getAttributeName': {
+                result = NCGet.getAttributeName(mod, data.ncid, data.varid, data.attId);
+                break;
+            }
+            case 'getVariableInfo': {
+                result = NCGet.getVariableInfo(mod, data.ncid, data.variable);
+                break;
+            }
+            case 'getAttributeValues': {
+                result = NCGet.getAttributeValues(mod, data.ncid, data.varid, data.attname);
+                break;
+            }
+            //Arrays
+            case 'getVariableArray': {
+                result = NCGet.getVariableArray(mod, data.ncid, data.variable);
+                break;
+            }
+            case 'getSlicedVariableArray': {
+                result = NCGet.getSlicedVariableArray(mod, data.ncid, data.variable, data.start, data.count);
+                break;
+            }
+            default:
+                throw new Error(`Unknown message type: ${type}`);
+        }
+        self.postMessage({ id, success: true, result });
+    }
+    catch (err) {
+        console.error(`Worker Error [${type}]:`, err);
+        self.postMessage({ id, success: false, error: err.message });
+    }
+};
+//# sourceMappingURL=netcdf-worker.js.map

package/dist/netcdf-worker.js.map

@@ -0,0 +1 @@
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package/dist/netcdf4.d.ts

@@ -9,12 +9,16 @@ export declare class NetCDF4 extends Group {
     private ncid;
     private _isOpen;
     private memorySource?;
+    private workerSource?;
+    private worker?;
+    private workerReady?;
     constructor(filename?: string | undefined, mode?: string, options?: DatasetOptions);
     initialize(): Promise<void>;
     static Dataset(filename: string, mode?: string, options?: DatasetOptions): Promise<NetCDF4>;
     static fromBlob(blob: Blob, mode?: string, options?: DatasetOptions): Promise<NetCDF4>;
     static fromArrayBuffer(buffer: ArrayBuffer, mode?: string, options?: DatasetOptions): Promise<NetCDF4>;
     static fromMemory(data: Uint8Array | ArrayBuffer, mode?: string, options?: DatasetOptions, filename?: string): Promise<NetCDF4>;
+    static fromBlobLazy(blob: Blob, options?: DatasetOptions): Promise<NetCDF4>;
     private open;
     get file_format(): string;
     get disk_format(): string;
@@ -29,26 +33,29 @@ export declare class NetCDF4 extends Group {
     openFile(path: string, mode?: 'r' | 'w' | 'a'): Promise<number>;
     createFile(path: string, mode?: number): Promise<number>;
     closeFile(ncid: number): Promise<void>;
-    getGlobalAttributes(): Record<string, any>;
-    getFullMetadata(): Record<string, any>[];
-    getAttributeValues(varid: number, attname: string): any;
-    getDimCount(): number;
-    getVariables(): Record<string, any>;
-    getVarIDs(): number[] | Int32Array;
-    getDimIDs(): number[] | Int32Array;
-    getDim(dimid: number): Record<string, any>;
-    getDims(): Record<string, any>;
-    getVarCount(): number;
-    getAttributeName(varid: number, attId: number): string | undefined;
-    getVariableInfo(variable: number | string): Record<string, any>;
-    getVariableArray(variable: number | string): Float32Array | Float64Array | Int16Array | Int32Array | BigInt64Array | BigInt[] | string[];
-    getSlicedVariableArray(variable: number | string, start: number[], count: number[]): Float32Array | Float64Array | Int16Array | Int32Array | BigInt64Array | BigInt[] | string[];
+    private requestId;
+    private callWorker;
+    getGlobalAttributes(): Promise<Record<string, any>>;
+    getFullMetadata(): Promise<Record<string, any>[]>;
+    getAttributeValues(varid: number, attname: string): Promise<any>;
+    getDimCount(): Promise<number>;
+    getVariables(): Promise<Record<string, any>>;
+    getVarIDs(): Promise<number[] | Int32Array>;
+    getDimIDs(): Promise<number[] | Int32Array>;
+    getDim(dimid: number): Promise<Record<string, any>>;
+    getDims(): Promise<Record<string, any>>;
+    getVarCount(): Promise<number>;
+    getAttributeName(varid: number, attId: number): Promise<string | undefined>;
+    getVariableInfo(variable: number | string): Promise<Record<string, any>>;
+    getVariableArray(variable: number | string): Promise<Float32Array | Float64Array | Int16Array | Int32Array | BigInt64Array | BigInt[] | string[]>;
+    getSlicedVariableArray(variable: number | string, start: number[], count: number[]): Promise<Float32Array | Float64Array | Int16Array | Int32Array | BigInt64Array | BigInt[] | string[]>;
     defineDimension(ncid: number, name: string, size: number): Promise<number>;
     defineVariable(ncid: number, name: string, type: number, dimids: number[]): Promise<number>;
     endDefineMode(ncid: number): Promise<void>;
     putVariableDouble(ncid: number, varid: number, data: Float64Array): Promise<void>;
     getVariableDouble(ncid: number, varid: number, length: number): Promise<Float64Array>;
     private createMockModule;
+    private setupWorker;
     private mountMemoryData;
     toArrayBuffer(): Promise<ArrayBuffer>;
     toBlob(type?: string): Promise<Blob>;

package/dist/netcdf4.d.ts.map

@@ -1 +1 @@
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