@eagleoutice/flowr 2.2.15 → 2.2.16

package/dataflow/internal/process/functions/call/built-in/built-in-access.js

@@ -13,7 +13,6 @@ const built_in_assignment_1 = require("./built-in-assignment");
 const identifier_1 = require("../../../../../environments/identifier");
 const vertex_1 = require("../../../../../graph/vertex");
 const containers_1 = require("../../../../../../util/containers");
-const config_1 = require("../../../../../../config");
 function tableAssignmentProcessor(name, args, rootId, data, outInfo) {
     outInfo.definitionRootNodes.push(rootId);
     return (0, known_call_handling_1.processKnownFunctionCall)({ name, args, rootId, data, origin: 'table:assign' }).information;
@@ -30,8 +29,8 @@ function tableAssignmentProcessor(name, args, rootId, data, outInfo) {
  * ```
  */
 function processAccess(name, args, rootId, data, config) {
-    if (args.length < 2) {
-        logger_1.dataflowLogger.warn(`Access ${name.content} has less than 2 arguments, skipping`);
+    if (args.length < 1) {
+        logger_1.dataflowLogger.warn(`Access ${name.content} has less than 1 argument, skipping`);
         return (0, known_call_handling_1.processKnownFunctionCall)({ name, args, rootId, data, forceArgs: config.forceArgs, origin: 'default' }).information;
     }
     const head = args[0];
@@ -113,9 +112,9 @@ function processNumberBasedAccess(data, name, args, rootId, config, head) {
         data.environment.current.memory.set(':=', existing);
     }
     if (head.value && outInfo.definitionRootNodes.length > 0) {
-        (0, built_in_assignment_1.markAsAssignment)(fnCall.information, { type: identifier_1.ReferenceType.Variable, name: head.value.lexeme ?? '', nodeId: head.value.info.id, definedAt: rootId, controlDependencies: [] }, outInfo.definitionRootNodes, rootId);
+        (0, built_in_assignment_1.markAsAssignment)(fnCall.information, { type: identifier_1.ReferenceType.Variable, name: head.value.lexeme ?? '', nodeId: head.value.info.id, definedAt: rootId, controlDependencies: [] }, outInfo.definitionRootNodes, rootId, data.flowrConfig);
     }
-    if ((0, config_1.getConfig)().solver.pointerTracking) {
+    if (data.flowrConfig.solver.pointerTracking) {
         referenceAccessedIndices(args, data, fnCall, rootId, true);
     }
     return fnCall;
@@ -157,7 +156,7 @@ function processStringBasedAccess(args, data, name, rootId, config) {
     const fnCall = (0, known_call_handling_1.processKnownFunctionCall)({ name, args: newArgs, rootId, data, forceArgs: config.forceArgs,
         origin: 'builtin:access'
     });
-    if ((0, config_1.getConfig)().solver.pointerTracking) {
+    if (data.flowrConfig.solver.pointerTracking) {
         referenceAccessedIndices(newArgs, data, fnCall, rootId, false);
     }
     return fnCall;

package/dataflow/internal/process/functions/call/built-in/built-in-apply.js

@@ -57,7 +57,7 @@ function processApply(name, args, rootId, data, config) {
     else if (val.type === type_1.RType.Symbol) {
         functionId = val.info.id;
         if (resolveValue) {
-            const resolved = (0, general_1.valueSetGuard)((0, alias_tracking_1.resolveIdToValue)(val.info.id, { environment: data.environment, idMap: data.completeAst.idMap }));
+            const resolved = (0, general_1.valueSetGuard)((0, alias_tracking_1.resolveIdToValue)(val.info.id, { environment: data.environment, idMap: data.completeAst.idMap, resolve: data.flowrConfig.solver.variables }));
             if (resolved?.elements.length === 1 && resolved.elements[0].type === 'string') {
                 functionName = (0, r_value_1.isValue)(resolved.elements[0].value) ? resolved.elements[0].value.str : undefined;
             }

package/dataflow/internal/process/functions/call/built-in/built-in-assignment.d.ts

@@ -10,6 +10,7 @@ import type { ContainerIndicesCollection } from '../../../../../graph/vertex';
 import type { ForceArguments } from '../common';
 import type { REnvironmentInformation } from '../../../../../environments/environment';
 import type { DataflowGraph } from '../../../../../graph/graph';
+import type { FlowrConfigOptions } from '../../../../../../config';
 export interface AssignmentConfiguration extends ForceArguments {
     readonly superAssignment?: boolean;
     readonly swapSourceAndTarget?: boolean;
@@ -43,9 +44,10 @@ export interface AssignmentToSymbolParameters<OtherInfo> extends AssignmentConfi
  * @param nodeToDefine       - `x`
  * @param sourceIds          - `v`
  * @param rootIdOfAssignment - `<-`
- * @param config             - configuration for the assignment processing
+ * @param config             - The flowr config
+ * @param assignmentConfig   - configuration for the assignment processing
  */
 export declare function markAsAssignment(information: {
     environment: REnvironmentInformation;
     graph: DataflowGraph;
-}, nodeToDefine: InGraphIdentifierDefinition, sourceIds: readonly NodeId[], rootIdOfAssignment: NodeId, config?: AssignmentConfiguration): void;
+}, nodeToDefine: InGraphIdentifierDefinition, sourceIds: readonly NodeId[], rootIdOfAssignment: NodeId, config: FlowrConfigOptions, assignmentConfig?: AssignmentConfiguration): void;

package/dataflow/internal/process/functions/call/built-in/built-in-assignment.js

@@ -17,7 +17,6 @@ const define_1 = require("../../../../../environments/define");
 const edge_1 = require("../../../../../graph/edge");
 const resolve_by_name_1 = require("../../../../../environments/resolve-by-name");
 const containers_1 = require("../../../../../../util/containers");
-const config_1 = require("../../../../../../config");
 const named_call_handling_1 = require("../named-call-handling");
 const built_in_1 = require("../../../../../environments/built-in");
 const unknown_side_effect_1 = require("../../../../../graph/unknown-side-effect");
@@ -216,10 +215,11 @@ function checkTargetReferenceType(source, sourceInfo) {
  * @param nodeToDefine       - `x`
  * @param sourceIds          - `v`
  * @param rootIdOfAssignment - `<-`
- * @param config             - configuration for the assignment processing
+ * @param config             - The flowr config
+ * @param assignmentConfig   - configuration for the assignment processing
  */
-function markAsAssignment(information, nodeToDefine, sourceIds, rootIdOfAssignment, config) {
-    if ((0, config_1.getConfig)().solver.pointerTracking) {
+function markAsAssignment(information, nodeToDefine, sourceIds, rootIdOfAssignment, config, assignmentConfig) {
+    if (config.solver.pointerTracking) {
         let indicesCollection = undefined;
         if (sourceIds.length === 1) {
             // support for tracking indices.
@@ -235,22 +235,22 @@ function markAsAssignment(information, nodeToDefine, sourceIds, rootIdOfAssignme
             }
         }
         // Indices defined by replacement operation e.g. $<-
-        if (config?.indicesCollection !== undefined) {
+        if (assignmentConfig?.indicesCollection !== undefined) {
             // If there were indices stored in the vertex, then a container was defined
             // and assigned to the index of another container e.g. a$b <- list(c = 1)
             if (indicesCollection) {
-                indicesCollection = (0, containers_1.addSubIndicesToLeafIndices)(config.indicesCollection, indicesCollection);
+                indicesCollection = (0, containers_1.addSubIndicesToLeafIndices)(assignmentConfig.indicesCollection, indicesCollection);
             }
             else {
                 // No indices were defined for the vertex e.g. a$b <- 2
-                indicesCollection = config.indicesCollection;
+                indicesCollection = assignmentConfig.indicesCollection;
             }
         }
         nodeToDefine.indicesCollection ??= indicesCollection;
     }
-    information.environment = (0, define_1.define)(nodeToDefine, config?.superAssignment, information.environment);
+    information.environment = (0, define_1.define)(nodeToDefine, assignmentConfig?.superAssignment, information.environment, config);
     information.graph.setDefinitionOfVertex(nodeToDefine);
-    if (!config?.quoteSource) {
+    if (!assignmentConfig?.quoteSource) {
         for (const sourceId of sourceIds) {
             information.graph.addEdge(nodeToDefine, sourceId, edge_1.EdgeType.DefinedBy);
         }
@@ -282,10 +282,10 @@ function processAssignmentToSymbol(config) {
         { nodeId: rootId, name: nameOfAssignmentFunction, controlDependencies: data.controlDependencies, type: identifier_1.ReferenceType.Function },
         ...sourceArg.unknownReferences, ...sourceArg.in, ...targetArg.in.filter(i => i.nodeId !== target.info.id), ...readFromSourceWritten
     ];
-    information.environment = (0, overwrite_1.overwriteEnvironment)(targetArg.environment, sourceArg.environment);
+    information.environment = (0, overwrite_1.overwriteEnvironment)(sourceArg.environment, targetArg.environment);
     // install assigned variables in environment
     for (const write of writeNodes) {
-        markAsAssignment(information, write, [source.info.id], rootId, config);
+        markAsAssignment(information, write, [source.info.id], rootId, data.flowrConfig, config);
     }
     information.graph.addEdge(rootId, targetArg.entryPoint, edge_1.EdgeType.Returns);
     if (quoteSource) {

package/dataflow/internal/process/functions/call/built-in/built-in-eval.js

@@ -2,7 +2,6 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.processEvalCall = processEvalCall;
 const info_1 = require("../../../../../info");
-const config_1 = require("../../../../../../config");
 const known_call_handling_1 = require("../known-call-handling");
 const retriever_1 = require("../../../../../../r-bridge/retriever");
 const decorate_1 = require("../../../../../../r-bridge/lang-4.x/ast/model/processing/decorate");
@@ -31,12 +30,12 @@ function processEvalCall(name, args, rootId, data, config) {
     if (config.includeFunctionCall) {
         information.graph.addEdge(rootId, args[0].value.info.id, edge_1.EdgeType.Returns);
     }
-    if (!(0, config_1.getConfig)().solver.evalStrings) {
+    if (!data.flowrConfig.solver.evalStrings) {
         (0, log_1.expensiveTrace)(logger_1.dataflowLogger, () => `Skipping eval call ${JSON.stringify(evalArgument)} (disabled in config file)`);
         (0, unknown_side_effect_1.handleUnknownSideEffect)(information.graph, information.environment, rootId);
         return information;
     }
-    const code = resolveEvalToCode(evalArgument.value, data.environment, data.completeAst.idMap);
+    const code = resolveEvalToCode(evalArgument.value, data.environment, data.completeAst.idMap, data.flowrConfig);
     if (code) {
         const idGenerator = (0, decorate_1.sourcedDeterministicCountingIdGenerator)(name.lexeme + '::' + rootId, name.location);
         data = {
@@ -68,7 +67,7 @@ function processEvalCall(name, args, rootId, data, config) {
     (0, unknown_side_effect_1.handleUnknownSideEffect)(information.graph, information.environment, rootId);
     return information;
 }
-function resolveEvalToCode(evalArgument, env, idMap) {
+function resolveEvalToCode(evalArgument, env, idMap, config) {
     const val = evalArgument;
     if (val.type === type_1.RType.FunctionCall && val.named && val.functionName.content === 'parse') {
         const arg = val.arguments.find(v => v !== r_function_call_1.EmptyArgument && v.name?.content === 'text');
@@ -80,13 +79,13 @@ function resolveEvalToCode(evalArgument, env, idMap) {
             return [arg.value.content.str];
         }
         else if (arg.value?.type === type_1.RType.Symbol) {
-            const resolved = (0, general_1.valueSetGuard)((0, alias_tracking_1.resolveIdToValue)(arg.value.info.id, { environment: env, idMap: idMap }));
+            const resolved = (0, general_1.valueSetGuard)((0, alias_tracking_1.resolveIdToValue)(arg.value.info.id, { environment: env, idMap: idMap, resolve: config.solver.variables }));
             if (resolved) {
                 return (0, string_constants_1.collectStrings)(resolved.elements);
             }
         }
         else if (arg.value?.type === type_1.RType.FunctionCall && arg.value.named && ['paste', 'paste0'].includes(arg.value.functionName.content)) {
-            return handlePaste(arg.value.arguments, env, idMap, arg.value.functionName.content === 'paste' ? [' '] : ['']);
+            return handlePaste(config, arg.value.arguments, env, idMap, arg.value.functionName.content === 'paste' ? [' '] : ['']);
         }
         return undefined;
     }
@@ -99,7 +98,7 @@ function resolveEvalToCode(evalArgument, env, idMap) {
         return undefined;
     }
 }
-function getAsString(val, env, idMap) {
+function getAsString(config, val, env, idMap) {
     if (!val) {
         return undefined;
     }
@@ -107,17 +106,17 @@ function getAsString(val, env, idMap) {
         return [val.content.str];
     }
     else if (val.type === type_1.RType.Symbol) {
-        const resolved = (0, general_1.valueSetGuard)((0, alias_tracking_1.resolveIdToValue)(val.info.id, { environment: env, idMap: idMap }));
+        const resolved = (0, general_1.valueSetGuard)((0, alias_tracking_1.resolveIdToValue)(val.info.id, { environment: env, idMap: idMap, resolve: config.solver.variables }));
         if (resolved) {
             return (0, string_constants_1.collectStrings)(resolved.elements);
         }
     }
     return undefined;
 }
-function handlePaste(args, env, idMap, sepDefault) {
+function handlePaste(config, args, env, idMap, sepDefault) {
     const sepArg = args.find(v => v !== r_function_call_1.EmptyArgument && v.name?.content === 'sep');
     if (sepArg) {
-        const res = sepArg !== r_function_call_1.EmptyArgument && sepArg.value ? getAsString(sepArg.value, env, idMap) : undefined;
+        const res = sepArg !== r_function_call_1.EmptyArgument && sepArg.value ? getAsString(config, sepArg.value, env, idMap) : undefined;
         if (!res) {
             // sep not resolvable clearly / unknown
             return undefined;
@@ -126,7 +125,7 @@ function handlePaste(args, env, idMap, sepDefault) {
     }
     const allArgs = args
         .filter(v => v !== r_function_call_1.EmptyArgument && v.name?.content !== 'sep' && v.value)
-        .map(v => getAsString(v.value, env, idMap));
+        .map(v => getAsString(config, v.value, env, idMap));
     if (allArgs.some(assert_1.isUndefined)) {
         return undefined;
     }

package/dataflow/internal/process/functions/call/built-in/built-in-expression-list.js

@@ -18,6 +18,7 @@ const built_in_1 = require("../../../../../environments/built-in");
 const overwrite_1 = require("../../../../../environments/overwrite");
 const logger_1 = require("../../../../../logger");
 const log_1 = require("../../../../../../util/log");
+const remove_1 = require("../../../../../environments/remove");
 const dotDotDotAccess = /^\.\.\d+$/;
 function linkReadNameToWriteIfPossible(read, environments, listEnvironments, remainingRead, nextGraph) {
     const readName = read.name && dotDotDotAccess.test(read.name) ? '...' : read.name;
@@ -53,7 +54,7 @@ function processNextExpression(currentElement, environment, listEnvironments, re
         linkReadNameToWriteIfPossible(read, environment, listEnvironments, remainingRead, nextGraph);
     }
 }
-function updateSideEffectsForCalledFunctions(calledEnvs, inputEnvironment, nextGraph) {
+function updateSideEffectsForCalledFunctions(calledEnvs, inputEnvironment, nextGraph, localDefs) {
     for (const { functionCall, called } of calledEnvs) {
         const callDependencies = nextGraph.getVertex(functionCall, true)?.cds;
         for (const calledFn of called) {
@@ -79,6 +80,10 @@ function updateSideEffectsForCalledFunctions(calledEnvs, inputEnvironment, nextG
             }
             if (hasUpdate) {
                 // we update all definitions to be linked with the corresponding function call
+                // we, however, have to ignore expression-local writes!
+                if (localDefs.length > 0) {
+                    environment = (0, remove_1.removeAll)(localDefs, environment);
+                }
                 inputEnvironment = (0, overwrite_1.overwriteEnvironment)(inputEnvironment, environment, callDependencies);
             }
         }
@@ -124,7 +129,7 @@ function processExpressionList(name, args, rootId, data) {
         environment = exitPoints.length > 0 ? (0, overwrite_1.overwriteEnvironment)(environment, processed.environment) : processed.environment;
         const calledEnvs = (0, linker_1.linkFunctionCalls)(nextGraph, data.completeAst.idMap, processed.graph);
         // if the called function has global redefinitions, we have to keep them within our environment
-        environment = updateSideEffectsForCalledFunctions(calledEnvs, environment, nextGraph);
+        environment = updateSideEffectsForCalledFunctions(calledEnvs, environment, nextGraph, processed.out);
         for (const { nodeId } of processed.out) {
             listEnvironments.add(nodeId);
         }

package/dataflow/internal/process/functions/call/built-in/built-in-for-loop.js

@@ -35,7 +35,7 @@ function processForLoop(name, args, rootId, data) {
     const headGraph = variable.graph.mergeWith(vector.graph);
     const writtenVariable = [...variable.unknownReferences, ...variable.in];
     for (const write of writtenVariable) {
-        headEnvironments = (0, define_1.define)({ ...write, definedAt: name.info.id, type: identifier_1.ReferenceType.Variable }, false, headEnvironments);
+        headEnvironments = (0, define_1.define)({ ...write, definedAt: name.info.id, type: identifier_1.ReferenceType.Variable }, false, headEnvironments, data.flowrConfig);
     }
     data = { ...data, environment: headEnvironments };
     const body = (0, processor_1.processDataflowFor)(bodyArg, data);
@@ -60,8 +60,7 @@ function processForLoop(name, args, rootId, data) {
     });
     /* mark the last argument as nse */
     nextGraph.addEdge(rootId, body.entryPoint, edge_1.EdgeType.NonStandardEvaluation);
-    // as the for-loop always evaluates its variable and condition
-    nextGraph.addEdge(name.info.id, variable.entryPoint, edge_1.EdgeType.Reads);
+    // as the for-loop always evaluates its condition
     nextGraph.addEdge(name.info.id, vector.entryPoint, edge_1.EdgeType.Reads);
     return {
         unknownReferences: [],

package/dataflow/internal/process/functions/call/built-in/built-in-if-then-else.js

@@ -34,7 +34,7 @@ function processIfThenElse(name, args, rootId, data) {
     let then;
     let makeThenMaybe = false;
     // we should defer this to the abstract interpretation
-    const values = (0, alias_tracking_1.resolveIdToValue)(condArg?.info.id, { environment: data.environment, idMap: data.completeAst.idMap });
+    const values = (0, alias_tracking_1.resolveIdToValue)(condArg?.info.id, { environment: data.environment, idMap: data.completeAst.idMap, resolve: data.flowrConfig.solver.variables });
     const conditionIsAlwaysFalse = (0, general_1.valueSetGuard)(values)?.elements.every(d => d.type === 'logical' && d.value === false) ?? false;
     const conditionIsAlwaysTrue = (0, general_1.valueSetGuard)(values)?.elements.every(d => d.type === 'logical' && d.value === true) ?? false;
     if (!conditionIsAlwaysFalse) {

package/dataflow/internal/process/functions/call/built-in/built-in-list.js

@@ -16,7 +16,7 @@ const containers_1 = require("../../../../../../util/containers");
  */
 function processList(name, args, rootId, data) {
     const fnCall = (0, known_call_handling_1.processKnownFunctionCall)({ name, args, rootId, data, origin: 'builtin:list' });
-    if (!(0, config_1.getConfig)().solver.pointerTracking) {
+    if (!data.flowrConfig.solver.pointerTracking) {
         return fnCall.information;
     }
     const listArgs = [];
@@ -67,7 +67,7 @@ function processList(name, args, rootId, data) {
         }
         listArgs.push(newIndex);
     }
-    if ((0, config_1.isOverPointerAnalysisThreshold)(listArgs.length)) {
+    if ((0, config_1.isOverPointerAnalysisThreshold)(data.flowrConfig, listArgs.length)) {
         return fnCall.information;
     }
     const indices = {

package/dataflow/internal/process/functions/call/built-in/built-in-replacement.js

@@ -12,7 +12,6 @@ const graph_1 = require("../../../../../graph/graph");
 const edge_1 = require("../../../../../graph/edge");
 const type_1 = require("../../../../../../r-bridge/lang-4.x/ast/model/type");
 const containers_1 = require("../../../../../../util/containers");
-const config_1 = require("../../../../../../config");
 const unpack_argument_1 = require("../argument/unpack-argument");
 const built_in_access_1 = require("./built-in-access");
 const built_in_1 = require("../../../../../environments/built-in");
@@ -28,7 +27,7 @@ args, rootId, data, config) {
     /* we only get here if <-, <<-, ... or whatever is part of the replacement is not overwritten */
     (0, log_1.expensiveTrace)(logger_1.dataflowLogger, () => `Replacement ${name.content} with ${JSON.stringify(args)}, processing`);
     let indices = config.activeIndices;
-    if ((0, config_1.getConfig)().solver.pointerTracking) {
+    if (data.flowrConfig.solver.pointerTracking) {
         indices ??= constructAccessedIndices(name.content, args);
     }
     /* we assign the first argument by the last for now and maybe mark as maybe!, we can keep the symbol as we now know we have an assignment */
@@ -79,7 +78,7 @@ args, rootId, data, config) {
         }
     }
     const fa = (0, unpack_argument_1.unpackArgument)(args[0]);
-    if (!(0, config_1.getConfig)().solver.pointerTracking && fa) {
+    if (!data.flowrConfig.solver.pointerTracking && fa) {
         res = {
             ...res,
             in: [...res.in, { name: fa.lexeme, type: identifier_1.ReferenceType.Variable, nodeId: fa.info.id, controlDependencies: data.controlDependencies }]

package/dataflow/internal/process/functions/call/built-in/built-in-source.d.ts

@@ -1,5 +1,6 @@
 import { type DataflowProcessorInformation } from '../../../../../processor';
 import type { DataflowInformation } from '../../../../../info';
+import type { FlowrLaxSourcingOptions } from '../../../../../../config';
 import { InferWorkingDirectory } from '../../../../../../config';
 import type { RParseRequest, RParseRequestProvider } from '../../../../../../r-bridge/retriever';
 import type { IdGenerator, ParentInformation } from '../../../../../../r-bridge/lang-4.x/ast/model/processing/decorate';
@@ -11,10 +12,11 @@ export declare function setSourceProvider(provider: RParseRequestProvider): void
 export declare function inferWdFromScript(option: InferWorkingDirectory, referenceChain: readonly RParseRequest[]): string[];
 /**
  * Tries to find sourced by a source request and returns the first path that exists
- * @param seed - the path originally requested in the `source` call
- * @param data - more information on the loading context
+ * @param resolveSource - options for lax file sourcing
+ * @param seed          - the path originally requested in the `source` call
+ * @param data          - more information on the loading context
  */
-export declare function findSource(seed: string, data: {
+export declare function findSource(resolveSource: FlowrLaxSourcingOptions | undefined, seed: string, data: {
     referenceChain: readonly RParseRequest[];
 }): string[] | undefined;
 export declare function processSourceCall<OtherInfo>(name: RSymbol<OtherInfo & ParentInformation>, args: readonly RFunctionArgument<OtherInfo & ParentInformation>[], rootId: NodeId, data: DataflowProcessorInformation<OtherInfo & ParentInformation>, config: {

package/dataflow/internal/process/functions/call/built-in/built-in-source.js

@@ -68,18 +68,18 @@ function applyReplacements(path, replacements) {
 }
 /**
  * Tries to find sourced by a source request and returns the first path that exists
- * @param seed - the path originally requested in the `source` call
- * @param data - more information on the loading context
+ * @param resolveSource - options for lax file sourcing
+ * @param seed          - the path originally requested in the `source` call
+ * @param data          - more information on the loading context
  */
-function findSource(seed, data) {
-    const config = (0, config_1.getConfig)().solver.resolveSource;
-    const capitalization = config?.ignoreCapitalization ?? false;
+function findSource(resolveSource, seed, data) {
+    const capitalization = resolveSource?.ignoreCapitalization ?? false;
     const explorePaths = [
-        ...(config?.searchPath ?? []),
-        ...(inferWdFromScript(config?.inferWorkingDirectory ?? config_1.InferWorkingDirectory.No, data.referenceChain))
+        ...(resolveSource?.searchPath ?? []),
+        ...(inferWdFromScript(resolveSource?.inferWorkingDirectory ?? config_1.InferWorkingDirectory.No, data.referenceChain))
     ];
     let tryPaths = [seed];
-    switch (config?.dropPaths ?? config_1.DropPathsOption.No) {
+    switch (resolveSource?.dropPaths ?? config_1.DropPathsOption.No) {
         case config_1.DropPathsOption.Once: {
             const first = platformBasename(seed);
             tryPaths.push(first);
@@ -101,8 +101,8 @@ function findSource(seed, data) {
         case config_1.DropPathsOption.No:
             break;
     }
-    if (config?.applyReplacements) {
-        const r = config.applyReplacements;
+    if (resolveSource?.applyReplacements) {
+        const r = resolveSource.applyReplacements;
         tryPaths = tryPaths.flatMap(t => applyReplacements(t, r));
     }
     const found = [];
@@ -129,7 +129,7 @@ function processSourceCall(name, args, rootId, data, config) {
         (0, known_call_handling_1.processKnownFunctionCall)({ name, args, rootId, data, origin: 'builtin:source' }).information
         : (0, info_1.initializeCleanDataflowInformation)(rootId, data);
     const sourceFileArgument = args[0];
-    if (!config.forceFollow && (0, config_1.getConfig)().ignoreSourceCalls) {
+    if (!config.forceFollow && data.flowrConfig.ignoreSourceCalls) {
         (0, log_1.expensiveTrace)(logger_1.dataflowLogger, () => `Skipping source call ${JSON.stringify(sourceFileArgument)} (disabled in config file)`);
         (0, unknown_side_effect_1.handleUnknownSideEffect)(information.graph, information.environment, rootId);
         return information;
@@ -139,19 +139,19 @@ function processSourceCall(name, args, rootId, data, config) {
         sourceFile = [(0, retriever_1.removeRQuotes)(sourceFileArgument.lexeme)];
     }
     else if (sourceFileArgument !== r_function_call_1.EmptyArgument) {
-        const resolved = (0, general_1.valueSetGuard)((0, alias_tracking_1.resolveIdToValue)(sourceFileArgument.info.id, { environment: data.environment, idMap: data.completeAst.idMap }));
+        const resolved = (0, general_1.valueSetGuard)((0, alias_tracking_1.resolveIdToValue)(sourceFileArgument.info.id, { environment: data.environment, idMap: data.completeAst.idMap, resolve: data.flowrConfig.solver.variables }));
         sourceFile = resolved?.elements.map(r => r.type === 'string' && (0, r_value_1.isValue)(r.value) ? r.value.str : undefined).filter(assert_1.isNotUndefined);
     }
     if (sourceFile && sourceFile.length === 1) {
         const path = (0, retriever_1.removeRQuotes)(sourceFile[0]);
-        let filepath = path ? findSource(path, data) : path;
+        let filepath = path ? findSource(data.flowrConfig.solver.resolveSource, path, data) : path;
         if (Array.isArray(filepath)) {
             filepath = filepath?.[0];
         }
         if (filepath !== undefined) {
             const request = sourceProvider.createRequest(filepath);
             // check if the sourced file has already been dataflow analyzed, and if so, skip it
-            const limit = (0, config_1.getConfig)().solver.resolveSource?.repeatedSourceLimit ?? 0;
+            const limit = data.flowrConfig.solver.resolveSource?.repeatedSourceLimit ?? 0;
             const findCount = data.referenceChain.filter(e => e.request === request.request && e.content === request.content).length;
             if (findCount > limit) {
                 logger_1.dataflowLogger.warn(`Found cycle (>=${limit + 1}) in dataflow analysis for ${JSON.stringify(request)}: ${JSON.stringify(data.referenceChain)}, skipping further dataflow analysis`);
@@ -181,7 +181,7 @@ function sourceRequest(rootId, request, data, information, getId) {
         const file = request.request === 'file' ? request.content : undefined;
         const parsed = (!data.parser.async ? data.parser : new shell_executor_1.RShellExecutor()).parse(request);
         normalized = (typeof parsed !== 'string' ?
-            (0, parser_1.normalizeTreeSitter)({ parsed }, getId, file) : (0, parser_1.normalize)({ parsed }, getId, file));
+            (0, parser_1.normalizeTreeSitter)({ parsed }, getId, data.flowrConfig, file) : (0, parser_1.normalize)({ parsed }, getId, file));
         dataflow = (0, processor_1.processDataflowFor)(normalized.ast, {
             ...data,
             currentRequest: request,

package/dataflow/internal/process/functions/call/built-in/built-in-vector.js

@@ -16,7 +16,7 @@ const containers_1 = require("../../../../../../util/containers");
  */
 function processVector(name, args, rootId, data) {
     const fnCall = (0, known_call_handling_1.processKnownFunctionCall)({ name, args, rootId, data, origin: 'builtin:vector' });
-    if (!(0, config_1.getConfig)().solver.pointerTracking) {
+    if (!data.flowrConfig.solver.pointerTracking) {
         return fnCall.information;
     }
     let vectorArgs = [];
@@ -52,7 +52,7 @@ function processVector(name, args, rootId, data) {
             vectorArgs = vectorArgs.concat(flattenedIndices);
         }
     }
-    if ((0, config_1.isOverPointerAnalysisThreshold)(vectorArgs.length)) {
+    if ((0, config_1.isOverPointerAnalysisThreshold)(data.flowrConfig, vectorArgs.length)) {
         return fnCall.information;
     }
     const indices = {

package/dataflow/internal/process/functions/call/built-in/built-in-while-loop.js

@@ -24,7 +24,7 @@ function processWhileLoop(name, args, rootId, data) {
         return (0, known_call_handling_1.processKnownFunctionCall)({ name, args, rootId, data, origin: 'default' }).information;
     }
     // we should defer this to the abstract interpretation
-    const values = (0, alias_tracking_1.resolveIdToValue)(unpackedArgs[0]?.info.id, { environment: data.environment, idMap: data.completeAst.idMap });
+    const values = (0, alias_tracking_1.resolveIdToValue)(unpackedArgs[0]?.info.id, { environment: data.environment, idMap: data.completeAst.idMap, resolve: data.flowrConfig.solver.variables });
     const conditionIsAlwaysFalse = (0, general_1.valueSetGuard)(values)?.elements.every(d => d.type === 'logical' && d.value === false) ?? false;
     //We don't care about the body if it never executes
     if (conditionIsAlwaysFalse) {

package/dataflow/internal/process/functions/call/common.js

@@ -83,7 +83,7 @@ function processAllArguments({ functionName, args, data, finalGraph, functionRoo
                     // When only a single index is referenced, we don't need to reference the whole object
                     const resolvedInGraphDef = resolved;
                     const isContainer = checkForContainer(resolvedInGraphDef?.indicesCollection);
-                    if (isContainer || isContainer === undefined) {
+                    if (isContainer !== false) {
                         finalGraph.addEdge(ingoing.nodeId, resolved.nodeId, edge_1.EdgeType.Reads);
                     }
                 }

package/dataflow/internal/process/functions/process-parameter.js

@@ -20,7 +20,7 @@ function processFunctionParameter(parameter, data) {
     for (const writtenNode of writtenNodes) {
         log_1.log.trace(`parameter ${writtenNode.name} (${writtenNode.nodeId}) is defined at id ${writtenNode.definedAt} with ${defaultValue === undefined ? 'no default value' : ' no default value'}`);
         graph.setDefinitionOfVertex(writtenNode);
-        environment = (0, define_1.define)(writtenNode, false, environment);
+        environment = (0, define_1.define)(writtenNode, false, environment, data.flowrConfig);
         if (defaultValue !== undefined) {
             if (parameter.defaultValue?.type === type_1.RType.FunctionDefinition) {
                 graph.addEdge(writtenNode, parameter.defaultValue.info.id, edge_1.EdgeType.DefinedBy);

package/dataflow/origin/dfg-get-symbol-refs.d.ts

@@ -0,0 +1,21 @@
+import type { NodeId } from '../../r-bridge/lang-4.x/ast/model/processing/node-id';
+import type { DataflowGraph } from '../graph/graph';
+/**
+ * Finds the definition of a variable and all other uses from that point on
+ *
+ * For example, for the following code
+ * ```ts
+ *   y <- 5
+ *   f <- function() {
+ *     y <- 8
+ *     print(y)
+ *   }
+ * ```
+ *
+ * @example getAllRefsToSymbol('3\@y') returns ['3\@y', '4\@y']
+ *
+ * @param graph  - Dataflow Graph
+ * @param nodeId - NodeId of Symbol to resolve
+ * @returns List including the Definitions and Refereneces to that definition
+ */
+export declare function getAllRefsToSymbol(graph: DataflowGraph, nodeId: NodeId): NodeId[] | undefined;

package/dataflow/origin/dfg-get-symbol-refs.js

@@ -0,0 +1,50 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getAllRefsToSymbol = getAllRefsToSymbol;
+const edge_1 = require("../graph/edge");
+const info_1 = require("../info");
+const dfg_get_origin_1 = require("./dfg-get-origin");
+/**
+ * Finds the definition of a variable and all other uses from that point on
+ *
+ * For example, for the following code
+ * ```ts
+ *   y <- 5
+ *   f <- function() {
+ *     y <- 8
+ *     print(y)
+ *   }
+ * ```
+ *
+ * @example getAllRefsToSymbol('3\@y') returns ['3\@y', '4\@y']
+ *
+ * @param graph  - Dataflow Graph
+ * @param nodeId - NodeId of Symbol to resolve
+ * @returns List including the Definitions and Refereneces to that definition
+ */
+function getAllRefsToSymbol(graph, nodeId) {
+    // Get all origins and filter for ones that happen for sure
+    const origins = (0, dfg_get_origin_1.getOriginInDfg)(graph, nodeId);
+    if (origins === undefined) {
+        return undefined;
+    }
+    const definitiveOrigins = origins.filter(o => (0, info_1.happensInEveryBranch)(graph.getVertex(o.id)?.cds));
+    if (definitiveOrigins.length === 0) {
+        return undefined;
+    }
+    // Gather all the references 
+    const res = new Set();
+    for (const origin of definitiveOrigins) {
+        res.add(origin.id);
+        graph.ingoingEdges(origin.id)
+            ?.entries()
+            .filter(([_, edge]) => (0, edge_1.edgeIncludesType)(edge.types, edge_1.EdgeType.Reads))
+            .forEach(([node, _]) => res.add(node));
+        graph.outgoingEdges(origin.id)
+            ?.entries()
+            .filter(([_, edge]) => (0, edge_1.edgeIncludesType)(edge.types, edge_1.EdgeType.DefinedByOnCall))
+            .forEach(([node, _]) => res.add(node));
+    }
+    return [...res];
+}
+//# sourceMappingURL=dfg-get-symbol-refs.js.map

package/dataflow/processor.d.ts

@@ -7,6 +7,7 @@ import type { REnvironmentInformation } from './environments/environment';
 import type { RParseRequest } from '../r-bridge/retriever';
 import type { RNode } from '../r-bridge/lang-4.x/ast/model/model';
 import type { KnownParserType, Parser } from '../r-bridge/parser';
+import type { FlowrConfigOptions } from '../config';
 export interface DataflowProcessorInformation<OtherInfo> {
     readonly parser: Parser<KnownParserType>;
     /**
@@ -35,6 +36,10 @@ export interface DataflowProcessorInformation<OtherInfo> {
      * The chain of control-flow {@link NodeId}s that lead to the current node (e.g., of known ifs).
      */
     readonly controlDependencies: ControlDependency[] | undefined;
+    /**
+     * The flowr configuration used for environment seeding, and precision control
+     */
+    readonly flowrConfig: FlowrConfigOptions;
 }
 export type DataflowProcessor<OtherInfo, NodeType extends RNodeWithParent<OtherInfo>> = (node: NodeType, data: DataflowProcessorInformation<OtherInfo>) => DataflowInformation;
 type NodeWithKey<OtherInfo, Key> = RNode<OtherInfo & ParentInformation> & {

package/documentation/doc-util/doc-cfg.js

@@ -11,13 +11,14 @@ const doc_files_1 = require("./doc-files");
 const cfg_1 = require("../../util/mermaid/cfg");
 const doc_code_1 = require("./doc-code");
 const cfg_simplification_1 = require("../../control-flow/cfg-simplification");
+const config_1 = require("../../config");
 async function getCfg(parser, code, simplifications = [], useDfg = true) {
     const result = useDfg ? await (0, default_pipelines_1.createDataflowPipeline)(parser, {
         request: (0, retriever_1.requestFromInput)(code)
-    }).allRemainingSteps() : await (0, default_pipelines_1.createNormalizePipeline)(parser, {
+    }, config_1.defaultConfigOptions).allRemainingSteps() : await (0, default_pipelines_1.createNormalizePipeline)(parser, {
         request: (0, retriever_1.requestFromInput)(code)
-    }).allRemainingSteps();
-    const cfg = (0, extract_cfg_1.extractCfg)(result.normalize, useDfg ? result.dataflow.graph : undefined, [...cfg_simplification_1.DefaultCfgSimplificationOrder, ...simplifications]);
+    }, config_1.defaultConfigOptions).allRemainingSteps();
+    const cfg = (0, extract_cfg_1.extractCfg)(result.normalize, config_1.defaultConfigOptions, useDfg ? result.dataflow.graph : undefined, [...cfg_simplification_1.DefaultCfgSimplificationOrder, ...simplifications]);
     return {
         info: cfg,
         ast: result.normalize,

package/documentation/doc-util/doc-code.d.ts

@@ -1,3 +1,3 @@
-export declare function codeBlock(language: string, code: string | undefined): string;
+export declare function codeBlock(language: string, code: string): string;
 export declare function codeInline(code: string): string;
 export declare function jsonWithLimit(object: object, maxLength?: number, tooLongText?: string): string;