@dzhechkov/skills-idea2prd 0.1.3 → 0.1.5

package/.dz-manifest.json

@@ -5,7 +5,7 @@
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         "path": "CHANGELOG.md",
-        "sha256": "44fbbf4909ce837794d0b46b1ac29c01a909ec9c46fd25baeb4247b63443ac77"
+        "sha256": "17403157f3609436e5587a532c022e6095ee85acc255cf313d5473df311cc55f"
       },
       {
         "path": "LICENSE",
@@ -21,7 +21,7 @@
       },
       {
         "path": "package.json",
-        "sha256": "bb159a378cb3f254761c27d45b0d72434a12b860370a0127889070b6ea8fe006"
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@@ -61,7 +61,7 @@
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         "path": "templates/.claude/skills/explore/SKILL.md",
-        "sha256": "c755a7bcdfe97fb7cb0bcd7bf3b1fd8a2d238ef082967fbf87740fc808302542"
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         "path": "templates/.claude/skills/explore/references/questioning-techniques.md",
@@ -73,7 +73,7 @@
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         "path": "templates/.claude/skills/goap-research-ed25519/SKILL.md",
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         "path": "templates/.claude/skills/goap-research-ed25519/references/ed25519-verification.md",
@@ -87,25 +87,49 @@
         "path": "templates/.claude/skills/goap-research-ed25519/references/source-evaluation.md",
         "sha256": "d6a19abb6be64dc9e1f539903080029125d2d899da4de3063e75e1afb7e4906f"
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+      {
+        "path": "templates/.claude/skills/goap-research-ed25519/scripts/check_report_evidence.py",
+        "sha256": "81dfdb14a868c7d0d72a640cfdf8ae3b2b5a453a17fcc1a3396587f3b488a919"
+      },
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-        "sha256": "dc9edc4d7907d13b28dfa74cc86b30a27a41de707ce72f39aca0ae08f07b5703"
+        "sha256": "9d0e74bab811a15b5032ec605e66a58081b52129aac873e7402e30b4dc4a2f10"
+      },
+      {
+        "path": "templates/.claude/skills/goap-research-ed25519/scripts/evidence_fetch.py",
+        "sha256": "5f4d7cb5d6fb3106d64130b6606582eb55a4f633ef969cf7890b1de1c179345b"
+      },
+      {
+        "path": "templates/.claude/skills/goap-research-ed25519/scripts/fixture_legacy_v1_fact.json",
+        "sha256": "e613de4737145cbfb5f349fbf9f1122801ce3508b62c3a18e2e0cba26b9da5b0"
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         "path": "templates/.claude/skills/goap-research-ed25519/scripts/goap_planner.py",
         "sha256": "2ec359e1ddc52ca3118144532ed483dcc609e856a04b29bb191b875c60ff4260"
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+      {
+        "path": "templates/.claude/skills/goap-research-ed25519/scripts/learning_bridge.py",
+        "sha256": "c9aea90ddfba5990b27405ca66a3f90308afa357e227ddad3877f9eee7df6e36"
+      },
+      {
+        "path": "templates/.claude/skills/goap-research-ed25519/scripts/source_tiers.py",
+        "sha256": "e1aae76fad01693ab35b51466fc4369c04a5ac64230fd307e7b798dc5beeff7a"
+      },
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         "path": "templates/.claude/skills/goap-research-ed25519/scripts/test_ed25519_verifier.py",
         "sha256": "ea6d888ac53bac3a0fe236c101f90a984edbac044d787d73c8414f1c4fc540d3"
       },
+      {
+        "path": "templates/.claude/skills/goap-research-ed25519/scripts/test_evidence_provenance.py",
+        "sha256": "1be4f63bbe7e77d599c5f0960d92b20a8f7ea6a6d07b30cb1d728f920b7259f2"
+      },
       {
         "path": "templates/.claude/skills/idea2prd-manual/SKILL.md",
-        "sha256": "a871e47547ee349db19f6413e296db137e2833e2aa2277672ba33bac730855a5"
+        "sha256": "64780d15549e8c2c20a83fbb7afa6856cecbb6d7b940b72ea7d57dca83675786"
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         "path": "templates/.claude/skills/idea2prd-manual/references/adr-catalog.md",
-        "sha256": "165aebf4d997dc7ca34ac813befb62e82faa507be66cbf70af897192913a51b4"
+        "sha256": "e65f61ebeb9d3aa3179f0457028640510dca9e6f5c096ebc474d5a088280b828"
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         "path": "templates/.claude/skills/idea2prd-manual/references/c4-model.md",
@@ -125,7 +149,7 @@
       },
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         "path": "templates/.claude/skills/idea2prd-manual/references/pseudocode-style.md",
-        "sha256": "49b53a85ac55ef2c9836979da929abbdbf9b1a7069b86790c9c2df9b909cce2e"
+        "sha256": "80b006853de2e3e38816b91a9b91443a512e9d0d3ec85801fee12f0e5025e155"
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       {
         "path": "templates/.claude/skills/idea2prd-manual/scripts/ai_context_builder.py",
@@ -145,9 +169,9 @@
       },
       {
         "path": "templates/.claude/skills/problem-solver-enhanced/SKILL.md",
-        "sha256": "530623c986dee931d47314c22195ea9de50a75f2a0daecfc469fb015c3dd3415"
+        "sha256": "031378aa2e10c98928e35de07d454135e73550cd0c49f0cd886d53e4208d6b9f"
       }
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-  "signature": "ijQ6u7pzx73w7JYknodK0orJvVrVmxmurNGnTbyMZgfh3EF7bFPov8tGzH3gQpnVVssdODRdmvESKXaSfuFLAA=="
+  "signature": "BLiTK1C6fUhclz0jlurwvpGRTUZ0kXyOT9qn2c/ZA4SmrkbU9NibPcV5WfBxocQ7ff0b2VHZzUkYd5oBrd2jCA=="
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@dzhechkov/skills-idea2prd",
-  "version": "0.1.3",
+  "version": "0.1.5",
   "description": "Idea2PRD Manual — composite skill for Claude Code: from problem/idea to Vibe-Coding-ready docs (PRD + ADR + DDD + C4 + Pseudocode + Test Scenarios + Completion) with 9 checkpoints",
   "main": "src/cli.js",
   "bin": {

package/sbom.json

@@ -15,7 +15,7 @@
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@@ -55,7 +55,7 @@
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+          "content": "627ab02cc637a64157d4e5cb3aa9e1fd178a40ac5eb18ca6a674734e4082c377"
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@@ -155,7 +155,7 @@
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@@ -185,7 +185,7 @@
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           "alg": "SHA-256",
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@@ -219,13 +219,43 @@
         }
       ]
     },
+    {
+      "type": "file",
+      "name": "templates/.claude/skills/goap-research-ed25519/scripts/check_report_evidence.py",
+      "hashes": [
+        {
+          "alg": "SHA-256",
+          "content": "81dfdb14a868c7d0d72a640cfdf8ae3b2b5a453a17fcc1a3396587f3b488a919"
+        }
+      ]
+    },
     {
       "type": "file",
       "name": "templates/.claude/skills/goap-research-ed25519/scripts/ed25519_verifier.py",
       "hashes": [
         {
           "alg": "SHA-256",
-          "content": "dc9edc4d7907d13b28dfa74cc86b30a27a41de707ce72f39aca0ae08f07b5703"
+          "content": "9d0e74bab811a15b5032ec605e66a58081b52129aac873e7402e30b4dc4a2f10"
+        }
+      ]
+    },
+    {
+      "type": "file",
+      "name": "templates/.claude/skills/goap-research-ed25519/scripts/evidence_fetch.py",
+      "hashes": [
+        {
+          "alg": "SHA-256",
+          "content": "5f4d7cb5d6fb3106d64130b6606582eb55a4f633ef969cf7890b1de1c179345b"
+        }
+      ]
+    },
+    {
+      "type": "file",
+      "name": "templates/.claude/skills/goap-research-ed25519/scripts/fixture_legacy_v1_fact.json",
+      "hashes": [
+        {
+          "alg": "SHA-256",
+          "content": "e613de4737145cbfb5f349fbf9f1122801ce3508b62c3a18e2e0cba26b9da5b0"
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@@ -239,6 +269,26 @@
         }
       ]
     },
+    {
+      "type": "file",
+      "name": "templates/.claude/skills/goap-research-ed25519/scripts/learning_bridge.py",
+      "hashes": [
+        {
+          "alg": "SHA-256",
+          "content": "c9aea90ddfba5990b27405ca66a3f90308afa357e227ddad3877f9eee7df6e36"
+        }
+      ]
+    },
+    {
+      "type": "file",
+      "name": "templates/.claude/skills/goap-research-ed25519/scripts/source_tiers.py",
+      "hashes": [
+        {
+          "alg": "SHA-256",
+          "content": "e1aae76fad01693ab35b51466fc4369c04a5ac64230fd307e7b798dc5beeff7a"
+        }
+      ]
+    },
     {
       "type": "file",
       "name": "templates/.claude/skills/goap-research-ed25519/scripts/test_ed25519_verifier.py",
@@ -249,13 +299,23 @@
         }
       ]
     },
+    {
+      "type": "file",
+      "name": "templates/.claude/skills/goap-research-ed25519/scripts/test_evidence_provenance.py",
+      "hashes": [
+        {
+          "alg": "SHA-256",
+          "content": "1be4f63bbe7e77d599c5f0960d92b20a8f7ea6a6d07b30cb1d728f920b7259f2"
+        }
+      ]
+    },
     {
       "type": "file",
       "name": "templates/.claude/skills/idea2prd-manual/SKILL.md",
       "hashes": [
         {
           "alg": "SHA-256",
-          "content": "a871e47547ee349db19f6413e296db137e2833e2aa2277672ba33bac730855a5"
+          "content": "64780d15549e8c2c20a83fbb7afa6856cecbb6d7b940b72ea7d57dca83675786"
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@@ -265,7 +325,7 @@
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@@ -315,7 +375,7 @@
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+          "content": "80b006853de2e3e38816b91a9b91443a512e9d0d3ec85801fee12f0e5025e155"
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@@ -365,7 +425,7 @@
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         {
           "alg": "SHA-256",
-          "content": "530623c986dee931d47314c22195ea9de50a75f2a0daecfc469fb015c3dd3415"
+          "content": "031378aa2e10c98928e35de07d454135e73550cd0c49f0cd886d53e4208d6b9f"
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package/templates/.claude/skills/explore/SKILL.md

@@ -10,7 +10,7 @@ description: >
   provide solutions until task is fully explored.
 trust_tier: 1
 trust_tier_label: "Structured"
-trust_tier_path: "Run /bto-test to promote to Tier 2"
+trust_tier_path: "Run a BTO evaluation (see the skills-bto package) to promote to Tier 2"
 ---
 
 # Explore: Adaptive Task Clarification

package/templates/.claude/skills/goap-research-ed25519/SKILL.md

@@ -3,7 +3,7 @@ name: goap-research-ed25519
 description: GOAP research system with Ed25519 provenance and tamper-evidence under pinned trusted-issuer keys. Use for high-stakes research that needs cited sources, explicit confidence, signed audit trails, or cryptographic proof of who signed a fact. Ed25519 does not prove truthfulness or prevent hallucination.
 trust_tier: 1
 trust_tier_label: "Structured"
-trust_tier_path: "Run /bto-test to promote to Tier 2"
+trust_tier_path: "Run a BTO evaluation (see the skills-bto package) to promote to Tier 2"
 ---
 
 # GOAP Research with Ed25519 Provenance
@@ -28,6 +28,104 @@ Ed25519 provides cryptographic provenance and tamper-evidence under pinned trust
 | `SELF_ATTESTED` | Researcher signature verifies against the embedded researcher key | The research record was not altered after self-signing | up to `0.60` |
 | `UNVERIFIED` | Unknown issuer, missing pin, revoked key, key mismatch, malformed key, or invalid signature | No cryptographic provenance | `0.0` |
 
+## Evidence Classes — the second, independent axis
+
+Trust classes answer **"was this record altered after signing?"**. They say nothing about whether
+anyone opened the source. That second question caused every content error in real operation, so it
+gets its own axis. A fact can be `ISSUER_SIGNED` **and** `ASSERTED` — a cryptographically perfect
+record of something recited from memory. That combination is legal, expressible, and the dangerous one.
+
+| Evidence class | Requirement | What it proves | Ceiling |
+|---|---|---|---|
+| `FETCH_VERIFIED` | `evidence_fetch.fetch_source()` performed the request and got a 2xx body | This script issued an HTTP request and received a body with this byte hash on this date | `1.0` |
+| `LISTING_ONLY` | URL known from a listing, or a body supplied by hand, or the fetch failed | The URL is known; nobody opened it through this tool | `0.50` |
+| `ASSERTED` | Stated from model memory, source never opened | Nothing about the source | `0.0` |
+| *(absent)* | Fact predates this axis | Evidence is **unknown** — neither asserted nor verified | no ceiling of its own |
+
+**`FETCH_VERIFIED` cannot be self-declared.** It is minted only by `create_fetched_fact()`, which
+requires a `FetchRecord` — the byte hash, HTTP status and date of a request that actually happened.
+The manual constructors (`create_listing_fact`, `create_asserted_fact`) have no way to produce it.
+The restriction lives in the API shape, not in the author's discipline.
+
+**Honest scope of `FETCH_VERIFIED`:** it means the bytes were received. It does **not** mean the
+source is authoritative, that the claim follows from it, or that the reader understood it.
+Provenance, not truth.
+
+### The report gate
+
+```bash
+python3 scripts/check_report_evidence.py --report report.md --facts facts.json
+```
+
+`ASSERTED` claims must not appear in a report at all. `LISTING_ONLY` claims may appear only with a
+visible marker next to the claim. This is an exit code, not advice — exit `1` on violation, exit `2`
+when the inputs cannot be read (a gate that could not evaluate has cleared nothing).
+
+## Self-learning (optional — needs `dz` on PATH)
+
+The most valuable signal in research is the moment a conclusion turned out to be
+WRONG. `scripts/learning_bridge.py` records those as METHOD lessons in the shared
+`dz` store and replays them at the start of the next investigation.
+
+```bash
+python3 scripts/learning_bridge.py status                      # is the loop on at all?
+python3 scripts/learning_bridge.py recall "transferrin saturation"   # traps already caught
+python3 scripts/learning_bridge.py teach "total testosterone is uninterpretable without SHBG"
+python3 scripts/learning_bridge.py check "<candidate>"         # privacy guard alone
+```
+
+**Recall at the START of an investigation** — before interpreting anything, ask what
+this analyte has already fooled us with. **Teach at four moments**, not at random:
+
+| Moment | Why it is the signal |
+|---|---|
+| a conclusion was RETRACTED | the single most valuable lesson available |
+| a population check flipped a conclusion | the effect did not transfer, and now we know the shape |
+| a preanalytical finding explained an alarming value | the value was an artifact; the rule generalises |
+| an open question was closed | the answer, not the waiting |
+
+**PRIVACY IS AN INVARIANT, NOT A PREFERENCE.** A lesson describes a METHOD, never a
+person. `teach` REFUSES the wrong shape before any store is touched:
+
+```
+good  "a fast lowers total testosterone by roughly a third, LH down, FSH normal"
+bad   "testosterone 8.04 nmol/l in this patient turned out to be a fasting artifact"
+bad   "John Smith has HIV"          — a capitalised word after the first is refused
+```
+
+The accepted form has three properties, all checkable: **no digits** (spelled-out
+values count — `eight point zero four` is a value), **no identifiers**, and **lower
+case** after the first word. The last one replaced an attempt to detect names: a name
+is any word, no list of them exists, and the attempt let `John Smith has HIV` through.
+Lower case costs a keystroke and closes that hole. ALL-CAPS and mixed-case acronyms
+(`SHBG`, `TSH`, `apoB`) are unaffected — they are how method lessons speak.
+
+Pass `--allow-numbers` when the number IS the knowledge (a guideline threshold) and
+you take responsibility for it. It never waves through a person beside a number.
+
+The refusal is not bureaucracy — the method form is the more useful lesson: a reading
+helps once, a rule helps every time. Honest scope: this is a SHAPE detector, not a
+de-identifier. A lower-case sentence that names nobody and quotes no figure can still
+describe one person, and no regular expression can see that. The shape rule plus the
+four METHOD moments is what keeps the store clean; the guard alone is not a guarantee.
+
+Without `dz` installed the package behaves exactly as before and says so once. An
+older `dz` does **not** reject `--domain` — it ignores the flag and exits 0 — so recall
+makes ONE call and detects the older CLI by the ABSENCE of the boost note in the
+output, then states that results may mix other domains. A degraded loop that says so
+beats a silent one. A real failure (non-zero exit) is reported as itself: proceeding
+without prior lessons, never as "your CLI is old".
+
+## Source Tiers
+
+`source_tiers.classify_source(url)` assigns a class ceiling: A `0.90` (guideline bodies, WHO,
+registries) · B `0.80` (peer-reviewed literature) · C `0.60` (preprints, trial registries) ·
+D `0.40` (everything else, including unknown domains). A tier is a claim about the CLASS a domain
+belongs to — it is **not** a cryptographic statement and must never be confused with issuer pinning.
+
+`source_tiers.is_stale(source_date, kind)` flags sources past their TTL. A **missing** `source_date`
+is flagged too: freshness that cannot be established is not freshness.
+
 ## Signed Message
 
 `sign_fact()` and `verify_fact()` use the same deterministic JSON message containing:
@@ -39,6 +137,16 @@ Ed25519 provides cryptographic provenance and tamper-evidence under pinned trust
 - `timestamp`
 - optional `research_context` / nonce
 
+**Schema v2** additionally covers `evidence_class`, `fetch_date` and `source_date`, plus a
+`"schema": "fact-v2"` self-description marker. Version is chosen by the presence of
+`evidence_class`: legacy facts keep verifying against the six-field v1 message forever.
+
+Because the three evidence fields are part of the signed text, **both** tamper directions fail:
+stripping `evidence_class` makes the verifier build the v1 text, which no longer matches the signed
+v2 text; adding it to a legacy fact makes it build the v2 text, which does not match the signed v1
+text. (The marker is self-description and the growth point for a future v3 — it is not itself the
+protection; a discrimination run proved that.)
+
 Changing the issuer or moving the source URL after signing invalidates the signature. The code signs the raw canonical message bytes; Ed25519 performs its own internal hashing. Do not pre-hash with SHA-512 before signing.
 
 ## Pinned Issuers
@@ -77,25 +185,43 @@ Reordering, substituting, editing, relabeling, or moving a signed fact fails ver
 ## Confidence Formula
 
 ```
-confidence =
-  0.0   if UNVERIFIED
-  <=0.60 if SELF_ATTESTED
-  min(0.95, base_by_source_level * recency_factor) if ISSUER_SIGNED
+confidence = min(
+    trust_ceiling,      # UNVERIFIED 0.0 · SELF_ATTESTED 0.60 · ISSUER_SIGNED 0.95
+    evidence_ceiling,   # FETCH_VERIFIED 1.0 · LISTING_ONLY 0.50 · ASSERTED 0.0 · absent → no cap
+    tier_ceiling,       # A 0.90 · B 0.80 · C 0.60 · D 0.40
+)
 ```
 
+The **weakest link decides**, never the average. An `ISSUER_SIGNED` fact that nobody read is capped
+at `0.0` by its evidence class — which is the whole point of the second axis.
+
 Invalid signatures are rejected with confidence `0.0`; they are never a recoverable `0.5` penalty.
 
 ## Research Workflow
 
 1. Define the research goal and required evidence threshold.
 2. Configure pinned issuer keys when issuer-grade provenance is required.
-3. Search and fetch sources.
+3. Search and locate candidate sources.
 4. Extract claims and source URLs.
-5. Hash source content with SHA-256 for `source_hash`.
-6. Create self-attested facts for the research ledger or issuer-signed facts when a pinned issuer key actually signed the message.
+5. **Fetch each source through the tool, not by hand:**
+   ```python
+   from evidence_fetch import fetch_source, FetchRecord
+   record = fetch_source(url)                      # real HTTP, stdlib only
+   if isinstance(record, FetchRecord):
+       fact = verifier.create_fetched_fact(claim, record, issuer, source_date="2024-03-01")
+   else:                                            # offline, 404, oversize, refused scheme…
+       fact = verifier.create_listing_fact(claim, url, reason=record.reason)
+   ```
+   A claim you never opened a source for is `verifier.create_asserted_fact(claim)` — record it
+   honestly and let the gate refuse it. Never hand-label a class you did not earn.
+6. Add facts to the research ledger; issuer-signed facts only when a pinned issuer key actually
+   signed the message.
 7. Verify facts and citation chains.
 8. Cross-check claims through ordinary source evaluation.
-9. Report confidence, unsigned claims, rejected signatures, and limitations explicitly.
+9. **Run the report gate before delivering:**
+   `python3 scripts/check_report_evidence.py --report <report.md> --facts <facts.json>` — exit 0 required.
+10. Report confidence, evidence-class mix, unsigned claims, rejected signatures, and limitations
+    explicitly.
 
 ## Output Expectations
 
@@ -103,10 +229,14 @@ Reports should include:
 
 - Research objective and GOAP plan executed.
 - Findings with source URLs.
-- Verification status per claim (`ISSUER_SIGNED`, `SELF_ATTESTED`, or `UNVERIFIED`).
+- Verification status per claim on BOTH axes: trust (`ISSUER_SIGNED` / `SELF_ATTESTED` /
+  `UNVERIFIED`) and evidence (`FETCH_VERIFIED` / `LISTING_ONLY` / `ASSERTED` / unknown-legacy).
+- The evidence-class mix as a count — the share of `ASSERTED` should be zero.
+- A visible marker next to every `LISTING_ONLY` claim ("source not opened directly — verify").
 - Chain integrity result when citation chains are used.
 - Unsigned and rejected claims.
-- Explicit caveat that cryptographic provenance is not truth verification.
+- Explicit caveat that cryptographic provenance is not truth verification, and that
+  `FETCH_VERIFIED` means the bytes arrived — not that the source is right.
 
 ## Implementation