@dzhechkov/harness-core 0.3.43 → 0.3.45

package/dist/agentdb-index.d.ts

@@ -0,0 +1,37 @@
+/**
+ * Generic native AgentDB indexer — the reusable primitive behind Option C's learnings-mirror
+ * AND the book-knowledge-digitizer's KB indexer (ADR-001 v2, `features/book-knowledge-digitizer`).
+ *
+ * Writes rows NATIVELY via the project's `better-sqlite3`, replicating `ReasoningBank`'s exact
+ * schema (`reasoning_patterns` + `pattern_embeddings`, embed text `${taskType}: ${text}`) so the
+ * `agentdb` MCP server's `agentdb_pattern_search` reads what we write. `agentdb` is used ONLY for
+ * its `EmbeddingService` — never its `createDatabase` (hardwired to sql.js, whose whole-file save
+ * corrupts concurrent native-WAL writers; QE P1). Best-effort: never throws, returns an honest
+ * error string when the deps are absent.
+ *
+ * @packageDocumentation
+ */
+/** One record to index. `text` is stored as `approach` AND embedded (`${taskType}: ${text}`). */
+export interface AgentdbRow {
+    readonly taskType: string;
+    readonly text: string;
+    /** Stored as `success_rate`; clamped to [0,1]. Use the REAL signal, never a fabricated 1.0. */
+    readonly score: number;
+    readonly tags?: readonly string[];
+    readonly metadata?: Record<string, unknown>;
+}
+/** Outcome of {@link indexPatternsToAgentdb}. */
+export interface AgentdbIndexResult {
+    readonly indexed: number;
+    readonly error?: string | undefined;
+}
+/** Resolve the shared store path: explicit opt → AGENTDB_PATH env → `<project>/.dz/agentdb.db`. */
+export declare function resolveAgentdbPath(projectRoot: string, dbPath?: string): string;
+/**
+ * Index `rows` into the shared AgentDB vector store. Returns `{indexed:0}` for an empty input and
+ * `{indexed:0, error}` when `agentdb`/`better-sqlite3` cannot be resolved from the project.
+ */
+export declare function indexPatternsToAgentdb(projectRoot: string, rows: readonly AgentdbRow[], opts?: {
+    dbPath?: string;
+}): Promise<AgentdbIndexResult>;
+//# sourceMappingURL=agentdb-index.d.ts.map

package/dist/agentdb-index.d.ts.map

@@ -0,0 +1 @@
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package/dist/agentdb-index.js

@@ -0,0 +1,96 @@
+/**
+ * Generic native AgentDB indexer — the reusable primitive behind Option C's learnings-mirror
+ * AND the book-knowledge-digitizer's KB indexer (ADR-001 v2, `features/book-knowledge-digitizer`).
+ *
+ * Writes rows NATIVELY via the project's `better-sqlite3`, replicating `ReasoningBank`'s exact
+ * schema (`reasoning_patterns` + `pattern_embeddings`, embed text `${taskType}: ${text}`) so the
+ * `agentdb` MCP server's `agentdb_pattern_search` reads what we write. `agentdb` is used ONLY for
+ * its `EmbeddingService` — never its `createDatabase` (hardwired to sql.js, whose whole-file save
+ * corrupts concurrent native-WAL writers; QE P1). Best-effort: never throws, returns an honest
+ * error string when the deps are absent.
+ *
+ * @packageDocumentation
+ */
+import { join, dirname } from 'node:path';
+import { pathToFileURL } from 'node:url';
+import { createRequire } from 'node:module';
+/** Resolve the shared store path: explicit opt → AGENTDB_PATH env → `<project>/.dz/agentdb.db`. */
+export function resolveAgentdbPath(projectRoot, dbPath) {
+    if (dbPath !== undefined && dbPath !== '')
+        return dbPath;
+    const env = process.env['AGENTDB_PATH'];
+    return env !== undefined && env !== '' ? env : join(projectRoot, '.dz', 'agentdb.db');
+}
+/** ReasoningBank's schema, verbatim — so the MCP server reads exactly what we insert. */
+const REASONING_BANK_SCHEMA = `CREATE TABLE IF NOT EXISTS reasoning_patterns (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  ts INTEGER DEFAULT (strftime('%s', 'now')),
+  task_type TEXT NOT NULL,
+  approach TEXT NOT NULL,
+  success_rate REAL NOT NULL DEFAULT 0.0,
+  uses INTEGER DEFAULT 0,
+  avg_reward REAL DEFAULT 0.0,
+  tags TEXT,
+  metadata TEXT
+);
+CREATE INDEX IF NOT EXISTS idx_patterns_task_type ON reasoning_patterns(task_type);
+CREATE INDEX IF NOT EXISTS idx_patterns_success_rate ON reasoning_patterns(success_rate);
+CREATE INDEX IF NOT EXISTS idx_patterns_uses ON reasoning_patterns(uses);
+CREATE TABLE IF NOT EXISTS pattern_embeddings (
+  pattern_id INTEGER PRIMARY KEY,
+  embedding BLOB NOT NULL,
+  FOREIGN KEY (pattern_id) REFERENCES reasoning_patterns(id) ON DELETE CASCADE
+);`;
+/**
+ * Index `rows` into the shared AgentDB vector store. Returns `{indexed:0}` for an empty input and
+ * `{indexed:0, error}` when `agentdb`/`better-sqlite3` cannot be resolved from the project.
+ */
+export async function indexPatternsToAgentdb(projectRoot, rows, opts = {}) {
+    if (rows.length === 0)
+        return { indexed: 0 };
+    let sqliteUrl;
+    let agentdbDir;
+    try {
+        const req = createRequire(join(projectRoot, 'package.json'));
+        sqliteUrl = pathToFileURL(req.resolve('better-sqlite3')).href;
+        agentdbDir = dirname(req.resolve('agentdb'));
+    }
+    catch {
+        return { indexed: 0, error: 'agentdb/better-sqlite3 not installed in project (run: dz setup --memory agentdb)' };
+    }
+    try {
+        const { default: Database } = (await import(sqliteUrl));
+        const { EmbeddingService } = (await import(pathToFileURL(join(agentdbDir, 'controllers', 'EmbeddingService.js')).href));
+        const emb = new EmbeddingService({ model: 'Xenova/all-MiniLM-L6-v2', dimension: 384, provider: 'transformers' });
+        await emb.initialize();
+        const db = new Database(resolveAgentdbPath(projectRoot, opts.dbPath));
+        try {
+            db.pragma('journal_mode = WAL');
+            db.pragma('busy_timeout = 5000'); // wait out a brief MCP-server write lock instead of failing
+            db.exec(REASONING_BANK_SCHEMA);
+            const insPattern = db.prepare('INSERT INTO reasoning_patterns (task_type, approach, success_rate, uses, avg_reward, tags, metadata) VALUES (?, ?, ?, ?, ?, ?, ?)');
+            const insEmb = db.prepare('INSERT OR REPLACE INTO pattern_embeddings (pattern_id, embedding) VALUES (?, ?)');
+            // Embeddings are async (can't run inside better-sqlite3's sync transaction) — compute them
+            // ALL first, then commit the writes atomically (QE P2: a mid-loop failure must not leave a
+            // partial batch reported as indexed:0).
+            const prepared = [];
+            for (const row of rows)
+                prepared.push({ row, vec: await emb.embed(`${row.taskType}: ${row.text}`) });
+            const commit = db.transaction(() => {
+                for (const { row, vec } of prepared) {
+                    const r = insPattern.run(row.taskType, row.text, Math.max(0, Math.min(1, Number.isFinite(row.score) ? row.score : 0)), 0, 0.0, row.tags ? JSON.stringify(row.tags) : null, row.metadata ? JSON.stringify(row.metadata) : null);
+                    insEmb.run(Number(r.lastInsertRowid), Buffer.from(vec.buffer));
+                }
+                return prepared.length;
+            });
+            return { indexed: commit() };
+        }
+        finally {
+            db.close();
+        }
+    }
+    catch (err) {
+        return { indexed: 0, error: `index failed: ${err instanceof Error ? err.message : String(err)}` };
+    }
+}
+//# sourceMappingURL=agentdb-index.js.map

package/dist/agentdb-index.js.map

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package/dist/book-kb.d.ts

@@ -0,0 +1,61 @@
+/**
+ * Book Knowledge Base — a lexical (FTS5) namespace for digitized-book Knowledge Units, kept
+ * **separate by construction** from the taught-pattern store (`.dz/memory/…`). Because it is its
+ * own file (`.dz/memory/books.sqlite`) with its own API, `loadPatterns`/`computePatternBoost`
+ * never see book KUs (ADR-001 v2 harness-integration P1: no boost pollution) and there is no
+ * retention expiry (books are permanent references, not decaying session patterns).
+ *
+ * The semantic (vector) layer lives in the shared agentdb store via {@link indexPatternsToAgentdb};
+ * this is the lexical layer for `dz recall --books`. Native better-sqlite3; best-effort.
+ *
+ * @packageDocumentation
+ */
+/** A digitized Knowledge Unit as stored in the book KB. */
+export interface BookKU {
+    readonly book: string;
+    readonly kuId: string;
+    readonly corpusVersion: string;
+    readonly type: string;
+    readonly name: string;
+    readonly problem: string;
+    readonly content: string;
+    readonly chapter?: string;
+    readonly pages?: readonly number[];
+    readonly metadata?: Record<string, unknown>;
+}
+/** A lexical hit from {@link queryBookKnowledge}. */
+export interface BookKUHit {
+    readonly book: string;
+    readonly kuId: string;
+    readonly type: string;
+    readonly name: string;
+    readonly problem: string;
+    readonly content: string;
+    readonly chapter?: string;
+    readonly pages?: readonly number[];
+}
+/** Default lexical store path — a `memory/` sibling of the pattern store, never `agentdb.db`. */
+export declare function bookKbPath(projectRoot: string): string;
+/**
+ * Upsert a batch of KUs for a book. Idempotent per (book, kuId): existing rows for the same
+ * kuId are replaced, and — since a re-ingest changes `corpusVersion` — every row for the book
+ * whose corpus_version differs from this batch's is evicted (stale-corpus cleanup), so the KB
+ * mirrors exactly the current ingest. Best-effort: returns an honest error, never throws.
+ */
+export declare function putBookKnowledge(projectRoot: string, kus: readonly BookKU[], opts?: {
+    dbPath?: string;
+}): Promise<{
+    upserted: number;
+    evicted: number;
+    error?: string;
+}>;
+/** Lexical (FTS5) search over the book KB. `book` filters to one book. Never throws. */
+export declare function queryBookKnowledge(projectRoot: string, query: string, opts?: {
+    limit?: number;
+    book?: string;
+    dbPath?: string;
+}): Promise<{
+    hits: BookKUHit[];
+    error?: string;
+}>;
+//# sourceMappingURL=book-kb.d.ts.map

package/dist/book-kb.d.ts.map

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package/dist/book-kb.js

@@ -0,0 +1,125 @@
+/**
+ * Book Knowledge Base — a lexical (FTS5) namespace for digitized-book Knowledge Units, kept
+ * **separate by construction** from the taught-pattern store (`.dz/memory/…`). Because it is its
+ * own file (`.dz/memory/books.sqlite`) with its own API, `loadPatterns`/`computePatternBoost`
+ * never see book KUs (ADR-001 v2 harness-integration P1: no boost pollution) and there is no
+ * retention expiry (books are permanent references, not decaying session patterns).
+ *
+ * The semantic (vector) layer lives in the shared agentdb store via {@link indexPatternsToAgentdb};
+ * this is the lexical layer for `dz recall --books`. Native better-sqlite3; best-effort.
+ *
+ * @packageDocumentation
+ */
+import { join, dirname } from 'node:path';
+import { existsSync, mkdirSync } from 'node:fs';
+import { pathToFileURL } from 'node:url';
+import { createRequire } from 'node:module';
+/** Default lexical store path — a `memory/` sibling of the pattern store, never `agentdb.db`. */
+export function bookKbPath(projectRoot) {
+    return join(projectRoot, '.dz', 'memory', 'books.sqlite');
+}
+const SCHEMA = `CREATE VIRTUAL TABLE IF NOT EXISTS book_knowledge USING fts5(
+  book UNINDEXED, ku_id UNINDEXED, corpus_version UNINDEXED, type UNINDEXED,
+  name, problem, content, chapter UNINDEXED, pages UNINDEXED, metadata UNINDEXED
+);`;
+async function openDb(projectRoot, dbPath) {
+    let sqliteUrl;
+    try {
+        const req = createRequire(join(projectRoot, 'package.json'));
+        sqliteUrl = pathToFileURL(req.resolve('better-sqlite3')).href;
+    }
+    catch {
+        return { error: 'better-sqlite3 not installed in project (run: dz setup --memory agentdb)' };
+    }
+    const path = dbPath ?? bookKbPath(projectRoot);
+    mkdirSync(dirname(path), { recursive: true });
+    const { default: Database } = (await import(sqliteUrl));
+    const db = new Database(path);
+    db.pragma('journal_mode = WAL');
+    db.pragma('busy_timeout = 5000');
+    db.exec(SCHEMA);
+    return db;
+}
+/**
+ * Upsert a batch of KUs for a book. Idempotent per (book, kuId): existing rows for the same
+ * kuId are replaced, and — since a re-ingest changes `corpusVersion` — every row for the book
+ * whose corpus_version differs from this batch's is evicted (stale-corpus cleanup), so the KB
+ * mirrors exactly the current ingest. Best-effort: returns an honest error, never throws.
+ */
+export async function putBookKnowledge(projectRoot, kus, opts = {}) {
+    if (kus.length === 0)
+        return { upserted: 0, evicted: 0 };
+    // Precondition (QE P3): a batch must be one book at one corpus_version — the eviction below is
+    // keyed on that. Reject a mixed batch instead of silently leaving stale rows.
+    const book = kus[0].book;
+    const corpusVersion = kus[0].corpusVersion;
+    if (kus.some((k) => k.book !== book || k.corpusVersion !== corpusVersion)) {
+        return { upserted: 0, evicted: 0, error: 'putBookKnowledge: batch must share one book + corpus_version' };
+    }
+    const opened = await openDb(projectRoot, opts.dbPath);
+    if ('error' in opened)
+        return { upserted: 0, evicted: 0, error: opened.error };
+    const db = opened;
+    try {
+        // Atomic (QE P2): eviction + all inserts in ONE transaction — a mid-batch failure rolls the
+        // eviction back too, so we never lose rows and never leave a half-written book.
+        const del = db.prepare('DELETE FROM book_knowledge WHERE book = ? AND corpus_version != ?');
+        const delKu = db.prepare('DELETE FROM book_knowledge WHERE book = ? AND ku_id = ?');
+        const ins = db.prepare(`INSERT INTO book_knowledge
+      (book, ku_id, corpus_version, type, name, problem, content, chapter, pages, metadata)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`);
+        const run = db.transaction(() => {
+            const evicted = del.run(book, corpusVersion).changes ?? 0;
+            for (const ku of kus) {
+                delKu.run(ku.book, ku.kuId);
+                ins.run(ku.book, ku.kuId, ku.corpusVersion, ku.type, ku.name, ku.problem, ku.content, ku.chapter ?? null, ku.pages ? JSON.stringify(ku.pages) : null, ku.metadata ? JSON.stringify(ku.metadata) : null);
+            }
+            return { upserted: kus.length, evicted };
+        });
+        return run();
+    }
+    catch (err) {
+        return { upserted: 0, evicted: 0, error: `book-kb upsert failed (rolled back): ${err instanceof Error ? err.message : String(err)}` };
+    }
+    finally {
+        db.close();
+    }
+}
+/** Lexical (FTS5) search over the book KB. `book` filters to one book. Never throws. */
+export async function queryBookKnowledge(projectRoot, query, opts = {}) {
+    const path = opts.dbPath ?? bookKbPath(projectRoot);
+    if (!existsSync(path))
+        return { hits: [] };
+    const opened = await openDb(projectRoot, opts.dbPath);
+    if ('error' in opened)
+        return { hits: [], error: opened.error };
+    const db = opened;
+    try {
+        const limit = opts.limit ?? 10;
+        // Build the FTS5 MATCH by AND-ing individually-quoted TERMS (QE P2): quoting the whole query as
+        // one phrase forced strict adjacency (a big recall regression); per-term quoting keeps
+        // injection safety (special chars stay literal inside each phrase) while allowing any-order
+        // matches. Empty/all-punctuation query → no MATCH (return no hits) rather than an FTS5 error.
+        const terms = query.split(/\s+/).map((t) => t.replace(/[^\p{L}\p{N}]+/gu, '')).filter(Boolean);
+        if (terms.length === 0)
+            return { hits: [] };
+        const match = terms.map((t) => `"${t}"`).join(' AND ');
+        const rows = (opts.book !== undefined
+            ? db.prepare('SELECT book, ku_id, type, name, problem, content, chapter, pages FROM book_knowledge WHERE book_knowledge MATCH ? AND book = ? ORDER BY rank LIMIT ?').all(match, opts.book, limit)
+            : db.prepare('SELECT book, ku_id, type, name, problem, content, chapter, pages FROM book_knowledge WHERE book_knowledge MATCH ? ORDER BY rank LIMIT ?').all(match, limit));
+        return {
+            hits: rows.map((r) => ({
+                book: r.book, kuId: r.ku_id, type: r.type, name: r.name, problem: r.problem, content: r.content,
+                ...(r.chapter !== null ? { chapter: r.chapter } : {}),
+                ...(r.pages !== null ? { pages: JSON.parse(r.pages) } : {}),
+            })),
+        };
+    }
+    catch (err) {
+        return { hits: [], error: `book-kb query failed: ${err instanceof Error ? err.message : String(err)}` };
+    }
+    finally {
+        db.close();
+    }
+}
+//# sourceMappingURL=book-kb.js.map

package/dist/book-kb.js.map

@@ -0,0 +1 @@
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package/dist/index.d.ts

@@ -20,9 +20,13 @@ export { benchmarkSkill, benchmarkSkills, compareSkills } from './benchmark.js';
 export { buildRegistry, searchRegistry, filterByCategory, skillPackBaseDirs, discoverSkillPackDirs } from './registry.js';
 export { recommend } from './recommend.js';
 export { pretrain } from './pretrain.js';
-export { loadPatterns, loadSessions, computePatternBoost, readLearningConfig, BOOST_CAP, recordPattern, loadStorePatternsSync, patternToRecord, recordToPattern, consolidateSessions, recallPatterns } from './patterns.js';
-export type { PatternRecord, SessionRecord, LearningConfig, LoadOptions, ConsolidateResult, ConsolidateOptions, SqliteBackendMode, RecallHit, SessionsSource } from './patterns.js';
+export { loadPatterns, loadSessions, computePatternBoost, readLearningConfig, BOOST_CAP, recordPattern, loadStorePatternsSync, patternToRecord, recordToPattern, consolidateSessions, recallPatterns, pruneNoisePatterns } from './patterns.js';
+export type { PatternRecord, SessionRecord, LearningConfig, LoadOptions, ConsolidateResult, ConsolidateOptions, SqliteBackendMode, RecallHit, SessionsSource, PruneNoiseResult } from './patterns.js';
 export { runSetup, generateHooksConfig, generateAgentdbWriter, writerVersionOf, AGENTDB_WRITER_VERSION } from './setup.js';
+export { indexPatternsToAgentdb, resolveAgentdbPath } from './agentdb-index.js';
+export { putBookKnowledge, queryBookKnowledge, bookKbPath } from './book-kb.js';
+export type { BookKU, BookKUHit } from './book-kb.js';
+export type { AgentdbRow, AgentdbIndexResult } from './agentdb-index.js';
 export { generatePlugin } from './plugin.js';
 export type { PluginManifest } from './plugin.js';
 export type { SetupOptions, SetupResult, SetupStep } from './setup.js';

package/dist/index.d.ts.map

@@ -1 +1 @@
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package/dist/index.js

@@ -18,8 +18,10 @@ export { benchmarkSkill, benchmarkSkills, compareSkills } from './benchmark.js';
 export { buildRegistry, searchRegistry, filterByCategory, skillPackBaseDirs, discoverSkillPackDirs } from './registry.js';
 export { recommend } from './recommend.js';
 export { pretrain } from './pretrain.js';
-export { loadPatterns, loadSessions, computePatternBoost, readLearningConfig, BOOST_CAP, recordPattern, loadStorePatternsSync, patternToRecord, recordToPattern, consolidateSessions, recallPatterns } from './patterns.js';
+export { loadPatterns, loadSessions, computePatternBoost, readLearningConfig, BOOST_CAP, recordPattern, loadStorePatternsSync, patternToRecord, recordToPattern, consolidateSessions, recallPatterns, pruneNoisePatterns } from './patterns.js';
 export { runSetup, generateHooksConfig, generateAgentdbWriter, writerVersionOf, AGENTDB_WRITER_VERSION } from './setup.js';
+export { indexPatternsToAgentdb, resolveAgentdbPath } from './agentdb-index.js';
+export { putBookKnowledge, queryBookKnowledge, bookKbPath } from './book-kb.js';
 export { generatePlugin } from './plugin.js';
 export { discoverPackages, publishPackages, bumpPatch, compareVersions, findUnpackagedSkills, orderByDependencies, syncReadmeVersion } from './publish.js';
 export { fetchAllDownloads } from './downloads.js';

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/operations.d.ts.map

@@ -1 +1 @@
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package/dist/operations.js

@@ -363,6 +363,22 @@ export async function runDoctor(options) {
             detail: '.claude/mcp.json is NOT loaded by Claude Code — re-run dz setup to register agentdb in .mcp.json (project root)',
         });
     }
+    // Flat dz hook entries (dz ≤0.3.43 emitted `{type,command}` without the matcher-group wrapper)
+    // are silently IGNORED by Claude Code — the writer never fires. Detect and point at the fix.
+    try {
+        const { commandsOf } = await import('./setup.js');
+        const settings = JSON.parse(readFileSync(join(root, '.claude', 'settings.json'), 'utf-8'));
+        const flatDz = Object.values(settings.hooks ?? {}).flat().filter((entry) => !Array.isArray(entry?.hooks) &&
+            commandsOf(entry).some((cmd) => cmd.includes('agentdb-writer.mjs') || cmd.includes('sessions.jsonl')));
+        if (flatDz.length > 0) {
+            checks.push({
+                name: 'agentdb hooks shape',
+                ok: false,
+                detail: `${flatDz.length} dz hook entr(ies) use the legacy flat shape Claude Code ignores (writer never fires) — re-run dz setup to migrate`,
+            });
+        }
+    }
+    catch { /* settings absent/unreadable — covered by other checks */ }
     const writerPath = join(root, '.dz', 'agentdb-writer.mjs');
     if (existsSync(writerPath)) {
         const { writerVersionOf, AGENTDB_WRITER_VERSION } = await import('./setup.js');

package/dist/operations.js.map

@@ -1 +1 @@
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package/dist/patterns.d.ts

@@ -145,5 +145,28 @@ export interface ConsolidateOptions {
      */
     readonly mirrorAgentdb?: boolean;
 }
+/** Outcome of a {@link pruneNoisePatterns} run. */
+export interface PruneNoiseResult {
+    /** Records removed from the lexical store (SQLite tier + JSON tier, summed). */
+    readonly lexicalRemoved: number;
+    /** Rows removed from the AgentDB vector mirror (`reasoning_patterns` + their embeddings). */
+    readonly vectorRemoved: number;
+    /** Honest reason when part of the prune could not run (best-effort — never throws). */
+    readonly error?: string;
+}
+/**
+ * RETRO-PRUNE of learning-store noise. Removes records the OLD harvester wrote before the
+ * noise gate existed — tool-invocation telemetry and system-wrapper "user responses", as
+ * defined by `isNoiseInsight` from `@dzhechkov/memory` (the shared prune contract) — from:
+ *
+ * 1. the **lexical** store (the same SQLite/JSON tiers `loadPatterns`/`consolidateSessions`
+ *    use — both tiers are swept, since a migrated store can hold copies in each), and
+ * 2. the **vector** mirror (`.dz/agentdb.db` `reasoning_patterns` rows with
+ *    `task_type = 'dz-learning'`, plus their `pattern_embeddings`).
+ *
+ * Best-effort and idempotent: any tier that can't be pruned contributes an honest `error`
+ * instead of throwing; a re-run removes 0.
+ */
+export declare function pruneNoisePatterns(projectRoot: string): PruneNoiseResult;
 export declare function consolidateSessions(projectRoot: string, opts?: ConsolidateOptions): Promise<ConsolidateResult>;
 //# sourceMappingURL=patterns.d.ts.map

package/dist/patterns.d.ts.map

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