@dxos/assistant 0.9.0 → 0.9.1-main.c7dcc2e112

package/dist/lib/neutral/extraction/index.mjs

@@ -1,78 +1,120 @@
 import "../chunk-J5LGTIGS.mjs";
 
-// src/extraction/extraction.ts
-import * as Schema from "effect/Schema";
-import { Operation } from "@dxos/compute";
-import { Obj, Type } from "@dxos/echo";
-import { DXN } from "@dxos/keys";
-import { log } from "@dxos/log";
+// src/extraction/extraction-llm-function/proper-noun-extraction.ts
+import * as LanguageModel from "@effect/ai/LanguageModel";
+import * as Effect from "effect/Effect";
+import * as Schema2 from "effect/Schema";
+import { AiService } from "@dxos/ai";
+import { Obj } from "@dxos/echo";
 import { Message } from "@dxos/types";
-var __dxlog_file = "/__w/dxos/dxos/packages/core/compute/assistant/src/extraction/extraction.ts";
-var ExtractionInput = Schema.Struct({
-  message: Type.getSchema(Message.Message),
-  objects: Schema.optional(Schema.Array(Obj.Unknown)),
-  options: Schema.optional(Schema.Struct({
-    timeout: Schema.optional(Schema.Number),
-    fallbackToRaw: Schema.optional(Schema.Boolean)
-  }))
-});
-var ExtractionOutput = Schema.Struct({
-  message: Type.getSchema(Message.Message),
-  timeElapsed: Schema.Number
-});
-var extractionAnthropicFunction = Operation.make({
-  meta: {
-    key: DXN.make("org.dxos.function.extraction.anthropic"),
-    name: "Entity Extraction (Anthropic)",
-    description: "Extract entities from transcript using Anthropic LLM.",
-    icon: "ph--text-t--regular"
-  },
-  input: ExtractionInput,
-  output: ExtractionOutput
-});
-var extractionNerFunction = Operation.make({
-  meta: {
-    key: DXN.make("org.dxos.function.extraction.ner"),
-    name: "Entity Extraction (NER)",
-    description: "Extract entities from transcript using Named Entity Recognition.",
-    icon: "ph--text-t--regular"
-  },
-  input: ExtractionInput,
-  output: ExtractionOutput
+
+// src/extraction/quotes.ts
+import * as Schema from "effect/Schema";
+import { Filter, Query } from "@dxos/echo";
+import { EID, EntityId } from "@dxos/keys";
+var ReferencedQuotes = Schema.Struct({
+  references: Schema.Array(Schema.Struct({
+    id: Schema.String,
+    quote: Schema.String
+  })).pipe(Schema.mutable).annotations({
+    // TODO(burdon): Does this description make sense?
+    description: `
+      The references to the context objects that are mentioned in the transcript. 
+      Quote should match the original transcript text exactly, while id is the id of the context object.
+    `
+  })
 });
-var processTranscriptMessage = async (params) => {
-  try {
-    if (params.options?.timeout && params.options.timeout > 0) {
-    } else {
-    }
-  } catch (error) {
-    if (params.options?.fallbackToRaw) {
-      log.warn("failed to process message, falling back to raw text", {
-        error
-      }, { "~LogMeta": "~LogMeta", F: __dxlog_file, L: 60, S: void 0 });
-      return {
-        message: params.input.message,
-        timeElapsed: 0
-      };
-    } else {
-      throw error;
-    }
-  }
+var findReferences = async (nouns, db, { searchKind = "full-text" } = {}) => {
+  const normalizedNouns = Array.from(new Set(nouns.map((noun) => noun.trim()).filter((noun) => noun.length > 0))).sort((leftNoun, rightNoun) => rightNoun.length - leftNoun.length);
+  const references = await Promise.all(normalizedNouns.map(async (noun) => {
+    const objects = await db.query(Query.select(Filter.text(noun, {
+      type: searchKind
+    }))).run();
+    return objects.length > 0 ? [
+      {
+        id: objects[0].id.toString(),
+        quote: noun
+      }
+    ] : [];
+  }));
   return {
-    message: params.input.message,
-    timeElapsed: 0
+    references: references.flat()
   };
 };
+var insertReferences = (text, quotes) => {
+  const references = quotes.references.filter((quote) => EntityId.isValid(quote.id)).sort((left, right) => right.quote.length - left.quote.length);
+  for (const quote of references) {
+    const regex = new RegExp(quote.quote.replace(/[.*+?^${}()|[\]\\]/g, "\\$&"), "gi");
+    text = replaceOutsideLinks(text, regex, `[${quote.quote}](${EID.make({
+      entityId: quote.id
+    })})`);
+  }
+  return text;
+};
+var MARKDOWN_LINK = /\[[^\]]*\]\([^)]*\)/g;
+var replaceOutsideLinks = (text, regex, replacement) => {
+  let result = "";
+  let plainStart = 0;
+  for (const link of text.matchAll(MARKDOWN_LINK)) {
+    const index = link.index ?? 0;
+    result += text.slice(plainStart, index).replace(regex, replacement) + link[0];
+    plainStart = index + link[0].length;
+  }
+  return result + text.slice(plainStart).replace(regex, replacement);
+};
+
+// src/extraction/extraction-llm-function/proper-noun-extraction.ts
+var EXTRACTION_MODEL = "ai.claude.model.claude-haiku-4-5";
+var ProperNouns = Schema2.Struct({
+  properNouns: Schema2.Array(Schema2.String).annotations({
+    description: "Proper nouns (names of people, organizations, places, products) mentioned in the text."
+  })
+});
+var extractProperNouns = (text) => Effect.gen(function* () {
+  const { value } = yield* Effect.scoped(LanguageModel.generateObject({
+    schema: ProperNouns,
+    prompt: [
+      "Extract every proper noun (people, organizations, places, products) mentioned in the transcript text below.",
+      "Return only the surface strings exactly as they appear. Exclude common nouns and pronouns.",
+      "",
+      "Transcript:",
+      text
+    ].join("\n")
+  }));
+  return value.properNouns.map((noun) => noun.trim()).filter((noun) => noun.length >= 3);
+}).pipe(Effect.provide(AiService.model(EXTRACTION_MODEL)));
+var enrichTranscriptMessage = (message, { db }) => Effect.gen(function* () {
+  const blocks = yield* Effect.forEach(message.blocks, (block) => Effect.gen(function* () {
+    if (block._tag !== "transcript") {
+      return block;
+    }
+    const nouns = yield* extractProperNouns(block.text);
+    const references = yield* Effect.promise(() => findReferences([
+      ...nouns
+    ], db));
+    return {
+      ...block,
+      text: insertReferences(block.text, references)
+    };
+  }));
+  return Obj.make(Message.Message, {
+    id: message.id,
+    sender: message.sender,
+    created: message.created,
+    properties: message.properties,
+    blocks
+  });
+});
 
 // src/extraction/extraction-ner-function/named-entity-recognition.ts
 import { pipeline } from "@xenova/transformers";
-import { log as log2 } from "@dxos/log";
-var __dxlog_file2 = "/__w/dxos/dxos/packages/core/compute/assistant/src/extraction/extraction-ner-function/named-entity-recognition.ts";
+import { log } from "@dxos/log";
+var __dxlog_file = "/__w/dxos/dxos/packages/core/compute/assistant/src/extraction/extraction-ner-function/named-entity-recognition.ts";
 var _ner;
 var getNer = () => {
   if (!_ner) {
     _ner = pipeline("ner", "Xenova/bert-base-NER").then((ner) => {
-      log2.info("NER model is ready", void 0, { "~LogMeta": "~LogMeta", F: __dxlog_file2, L: 14, S: void 0 });
+      log.info("NER model is ready", void 0, { "~LogMeta": "~LogMeta", F: __dxlog_file, L: 14, S: void 0 });
       return ner;
     });
   }
@@ -140,69 +182,16 @@ var combineNerTokens = (group) => {
   }
   return combinedToken;
 };
-
-// src/extraction/quotes.ts
-import * as Schema2 from "effect/Schema";
-import { Filter, Query } from "@dxos/echo";
-import { EID, EntityId } from "@dxos/keys";
-import { log as log3 } from "@dxos/log";
-var __dxlog_file3 = "/__w/dxos/dxos/packages/core/compute/assistant/src/extraction/quotes.ts";
-var ReferencedQuotes = Schema2.Struct({
-  references: Schema2.Array(Schema2.Struct({
-    id: Schema2.String,
-    quote: Schema2.String
-  })).pipe(Schema2.mutable).annotations({
-    // TODO(burdon): Does this description make sense?
-    description: `
-      The references to the context objects that are mentioned in the transcript. 
-      Quote should match the original transcript text exactly, while id is the id of the context object.
-    `
-  })
-});
-var findQuotes = async (quotes, db) => {
-  const references = await Promise.all(quotes.map(async (quote) => {
-    const objects = await db.query(Query.select(Filter.text(quote, {
-      type: "vector"
-    }))).run();
-    log3.info("found quotes in vector index", {
-      objects,
-      quote
-    }, { "~LogMeta": "~LogMeta", F: __dxlog_file3, L: 25, S: void 0 });
-    return objects.length > 0 ? [
-      {
-        id: objects[0].id.toString(),
-        quote
-      }
-    ] : [];
-  }));
-  return {
-    references: references.flat()
-  };
-};
-var insertReferences = (text, quotes) => {
-  for (const quote of quotes.references) {
-    if (!EntityId.isValid(quote.id)) {
-      continue;
-    }
-    const regex = new RegExp(quote.quote.replace(/[.*+?^${}()|[\]\\]/g, "\\$&"), "gi");
-    text = text.replace(regex, `[${quote.quote}](${EID.make({
-      entityId: quote.id
-    })})`);
-  }
-  return text;
-};
 export {
-  ExtractionInput,
-  ExtractionOutput,
+  ProperNouns,
   ReferencedQuotes,
   combineNerTokens,
   createTokenGroups,
+  enrichTranscriptMessage,
   extractFullEntities,
-  extractionAnthropicFunction,
-  extractionNerFunction,
-  findQuotes,
+  extractProperNouns,
+  findReferences,
   getNer,
-  insertReferences,
-  processTranscriptMessage
+  insertReferences
 };
 //# sourceMappingURL=index.mjs.map

package/dist/lib/neutral/extraction/index.mjs.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
-  "sources": ["../../../../src/extraction/extraction.ts", "../../../../src/extraction/extraction-ner-function/named-entity-recognition.ts", "../../../../src/extraction/quotes.ts"],
-  "sourcesContent": ["//\n// Copyright 2025 DXOS.org\n//\n\nimport * as Schema from 'effect/Schema';\n\nimport { Operation } from '@dxos/compute';\nimport { Obj, Type } from '@dxos/echo';\nimport { DXN } from '@dxos/keys';\nimport { log } from '@dxos/log';\nimport { Message } from '@dxos/types';\n\nexport const ExtractionInput = Schema.Struct({\n  message: Type.getSchema(Message.Message),\n  objects: Schema.optional(Schema.Array(Obj.Unknown)),\n  options: Schema.optional(\n    Schema.Struct({\n      timeout: Schema.optional(Schema.Number),\n      fallbackToRaw: Schema.optional(Schema.Boolean),\n    }),\n  ),\n});\nexport type ExtractionInput = Schema.Schema.Type<typeof ExtractionInput>;\nexport const ExtractionOutput = Schema.Struct({\n  message: Type.getSchema(Message.Message),\n  timeElapsed: Schema.Number,\n});\nexport type ExtractionOutput = Schema.Schema.Type<typeof ExtractionOutput>;\nexport type ProcessTranscriptMessageProps = {\n  input: ExtractionInput;\n  function: Operation.Definition<ExtractionInput, ExtractionOutput>;\n\n  options?: {\n    /**\n     * Timeout for the entity extraction.\n     */\n    timeout?: number;\n\n    /**\n     * Fallback to raw text if the entity extraction fails.\n     * Otherwise the function will throw an error.\n     * @default false\n     */\n    fallbackToRaw?: boolean;\n  };\n};\n\nexport type ExtractionFunction = Operation.Definition<ExtractionInput, ExtractionOutput>;\n\n/**\n * Placeholder for Anthropic-based entity extraction.\n * Implementation is currently disabled pending restoration of extraction logic.\n */\nexport const extractionAnthropicFunction = Operation.make({\n  meta: {\n    key: DXN.make('org.dxos.function.extraction.anthropic'),\n    name: 'Entity Extraction (Anthropic)',\n    description: 'Extract entities from transcript using Anthropic LLM.',\n    icon: 'ph--text-t--regular',\n  },\n  input: ExtractionInput,\n  output: ExtractionOutput,\n});\n\n/**\n * Placeholder for NER-based entity extraction.\n * Implementation is currently disabled pending restoration of extraction logic.\n */\nexport const extractionNerFunction = Operation.make({\n  meta: {\n    key: DXN.make('org.dxos.function.extraction.ner'),\n    name: 'Entity Extraction (NER)',\n    description: 'Extract entities from transcript using Named Entity Recognition.',\n    icon: 'ph--text-t--regular',\n  },\n  input: ExtractionInput,\n  output: ExtractionOutput,\n});\n\n/**\n * Extract entities from the transcript message and add them to the message.\n */\n// TODO(dmaretskyi): Move context to a vector search index.\nexport const processTranscriptMessage = async (params: ProcessTranscriptMessageProps): Promise<ExtractionOutput> => {\n  try {\n    if (params.options?.timeout && params.options.timeout > 0) {\n      // return await asyncTimeout(params.executor.invoke(params.function, params.input), params.options.timeout);\n    } else {\n      // return await params.executor.invoke(params.function, params.input);\n    }\n  } catch (error) {\n    if (params.options?.fallbackToRaw) {\n      log.warn('failed to process message, falling back to raw text', { error });\n      return {\n        message: params.input.message,\n        timeElapsed: 0,\n      };\n    } else {\n      throw error;\n    }\n  }\n\n  // TODO(dmaretskyi): Restore extraction logic.\n  return { message: params.input.message, timeElapsed: 0 };\n};\n", "//\n// Copyright 2025 DXOS.org\n//\n\nimport {\n  type TokenClassificationOutput,\n  type TokenClassificationPipelineType,\n  type TokenClassificationSingle,\n  pipeline,\n} from '@xenova/transformers';\n\nimport { log } from '@dxos/log';\n\nlet _ner: Promise<TokenClassificationPipelineType>;\n\n/**\n * Named Entity Recognition pipeline.\n * Initializes the pipeline on first call.\n * @returns The singleton promise that resolves to a token classification pipeline.\n */\nexport const getNer = () => {\n  if (!_ner) {\n    _ner = pipeline('ner', 'Xenova/bert-base-NER').then((ner) => {\n      log.info('NER model is ready');\n      return ner;\n    });\n  }\n\n  return _ner;\n};\n\n/**\n * Extracts entities from text using the named entity recognition pipeline and does simple grouping of tokens.\n */\nexport const extractFullEntities = async (text: string): Promise<TokenClassificationSingle[]> => {\n  const ner = await getNer();\n  const entities = (await ner(text)) as TokenClassificationOutput;\n  const tokenGroups = createTokenGroups(entities);\n  const combinedEntities = tokenGroups.map(combineNerTokens);\n  return combinedEntities;\n};\n\nexport const createTokenGroups = (tokens: TokenClassificationSingle[]): TokenClassificationSingle[][] => {\n  const tokenGroups: TokenClassificationSingle[][] = [];\n\n  const canBeCombined = (prevToken: TokenClassificationSingle, currentToken: TokenClassificationSingle) => {\n    const [currentState, currentEntity] = currentToken.entity.split('-'); // B, I, O\n    const [prevState, prevEntity] = prevToken.entity.split('-'); // B, I, O\n    if (prevEntity !== currentEntity) {\n      return false;\n    }\n    if (prevState === 'O') {\n      return false;\n    }\n    if (currentState === 'I') {\n      return true;\n    }\n    if ((prevState === 'B' || prevState === 'I') && currentState === 'B') {\n      return currentToken.word.startsWith('#');\n    }\n    return false;\n  };\n\n  for (const token of tokens) {\n    if (tokenGroups.length === 0) {\n      tokenGroups.push([token]);\n      continue;\n    }\n    const lastTokenGroup = tokenGroups.at(-1)!;\n    if (canBeCombined(lastTokenGroup.at(-1)!, token)) {\n      lastTokenGroup.push(token);\n      continue;\n    }\n    tokenGroups.push([token]);\n  }\n\n  return tokenGroups;\n};\n\nexport const combineNerTokens = (group: TokenClassificationSingle[]): TokenClassificationSingle => {\n  const combinedToken: TokenClassificationSingle = {\n    entity: group.at(0)!.entity.split('-')[1],\n    score: group.reduce((acc, token) => acc + token.score, 0) / group.length,\n    index: group.at(0)!.index,\n    word: group.at(0)!.word,\n    start: group.at(0)!.start,\n    end: group.at(-1)!.end,\n  };\n\n  for (const token of group.slice(1)) {\n    if (token.word.startsWith('#')) {\n      combinedToken.word += token.word.replace(/^#+/, '');\n    } else {\n      combinedToken.word += ' ' + token.word;\n    }\n  }\n\n  return combinedToken;\n};\n", "//\n// Copyright 2025 DXOS.org\n//\n\nimport * as Schema from 'effect/Schema';\n\nimport { type Database, Filter, Query } from '@dxos/echo';\nimport { EID, EntityId } from '@dxos/keys';\nimport { log } from '@dxos/log';\n\nexport const ReferencedQuotes = Schema.Struct({\n  references: Schema.Array(\n    Schema.Struct({\n      id: Schema.String,\n      quote: Schema.String, // TODO(burdon): Quote?\n    }),\n  )\n    .pipe(Schema.mutable)\n    .annotations({\n      // TODO(burdon): Does this description make sense?\n      description: `\n      The references to the context objects that are mentioned in the transcript. \n      Quote should match the original transcript text exactly, while id is the id of the context object.\n    `,\n    }),\n});\nexport type ReferencedQuotes = Schema.Schema.Type<typeof ReferencedQuotes>;\n\nexport const findQuotes = async (quotes: string[], db: Database.Database): Promise<ReferencedQuotes> => {\n  const references = await Promise.all(\n    quotes.map(async (quote) => {\n      const objects = await db.query(Query.select(Filter.text(quote, { type: 'vector' }))).run();\n      log.info('found quotes in vector index', { objects, quote });\n      return objects.length > 0 ? [{ id: objects[0].id.toString(), quote }] : [];\n    }),\n  );\n  return { references: references.flat() };\n};\n\n/**\n * Finds and replaces all quotes with DXNs references.\n */\n// TODO(dmaretskyi): Lookup and verifiy ids from provided context.\nexport const insertReferences = (text: string, quotes: ReferencedQuotes) => {\n  for (const quote of quotes.references) {\n    if (!EntityId.isValid(quote.id)) {\n      continue;\n    }\n\n    // Use a case-insensitive regular expression to replace the quote.\n    const regex = new RegExp(quote.quote.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&'), 'gi');\n    text = text.replace(regex, `[${quote.quote}](${EID.make({ entityId: quote.id })})`);\n  }\n\n  return text;\n};\n"],
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-  "names": ["Schema", "Operation", "Obj", "Type", "DXN", "log", "Message", "ExtractionInput", "objects", "Array", "options", "Struct", "Number", "fallbackToRaw", "optional", "timeElapsed", "key", "make", "name", "description", "icon", "input", "output", "params", "timeout", "error", "message", "pipeline", "log", "_ner", "ner", "__dxlog_file", "entities", "text", "tokenGroups", "createTokenGroups", "combinedEntities", "canBeCombined", "prevToken", "currentToken", "currentState", "prevEntity", "entity", "currentEntity", "prevState", "token", "push", "lastTokenGroup", "score", "reduce", "index", "group", "at", "word", "start", "end", "combinedToken", "Schema", "Filter", "Query", "EID", "EntityId", "log", "__dxlog_file", "ReferencedQuotes", "String", "pipe", "description", "query", "select", "run", "info", "objects", "quote", "id", "toString", "entityId", "text"]
+  "sources": ["../../../../src/extraction/extraction-llm-function/proper-noun-extraction.ts", "../../../../src/extraction/quotes.ts", "../../../../src/extraction/extraction-ner-function/named-entity-recognition.ts"],
+  "sourcesContent": ["//\n// Copyright 2025 DXOS.org\n//\n\nimport * as LanguageModel from '@effect/ai/LanguageModel';\nimport * as Effect from 'effect/Effect';\nimport * as Schema from 'effect/Schema';\n\nimport { AiService } from '@dxos/ai';\nimport { type Database, Obj } from '@dxos/echo';\nimport { Message } from '@dxos/types';\n\nimport { findReferences, insertReferences } from '../quotes';\n\nconst EXTRACTION_MODEL = 'ai.claude.model.claude-haiku-4-5';\n\n/**\n * Proper nouns extracted from transcript text.\n */\nexport const ProperNouns = Schema.Struct({\n  properNouns: Schema.Array(Schema.String).annotations({\n    description: 'Proper nouns (names of people, organizations, places, products) mentioned in the text.',\n  }),\n});\nexport type ProperNouns = Schema.Schema.Type<typeof ProperNouns>;\n\n/**\n * Extracts proper nouns from transcript text using a small LLM (Haiku). Provides the LanguageModel\n * internally so the residual requirement is just {@link AiService.AiService}.\n */\nexport const extractProperNouns = (text: string) =>\n  Effect.gen(function* () {\n    const { value } = yield* Effect.scoped(\n      LanguageModel.generateObject({\n        schema: ProperNouns,\n        prompt: [\n          'Extract every proper noun (people, organizations, places, products) mentioned in the transcript text below.',\n          'Return only the surface strings exactly as they appear. Exclude common nouns and pronouns.',\n          '',\n          'Transcript:',\n          text,\n        ].join('\\n'),\n      }),\n    );\n\n    // Drop short tokens (e.g. \"IT\"): insertReferences replaces case-insensitive substrings, so a\n    // short noun would match inside unrelated words (\"secur[IT]y\") and corrupt neighbouring links.\n    return value.properNouns.map((noun) => noun.trim()).filter((noun) => noun.length >= 3);\n  }).pipe(Effect.provide(AiService.model(EXTRACTION_MODEL)));\n\n/**\n * Enriches a transcript message: for each transcript block, extracts proper nouns, links them to\n * objects in the space via full-text search, and rewrites the text with `[noun](dxn)` references.\n * Requires {@link AiService.AiService}; takes the space database handle.\n */\nexport const enrichTranscriptMessage = (message: Message.Message, { db }: { db: Database.Database }) =>\n  Effect.gen(function* () {\n    const blocks = yield* Effect.forEach(message.blocks, (block) =>\n      Effect.gen(function* () {\n        if (block._tag !== 'transcript') {\n          return block;\n        }\n\n        const nouns = yield* extractProperNouns(block.text);\n        const references = yield* Effect.promise(() => findReferences([...nouns], db));\n        return { ...block, text: insertReferences(block.text, references) };\n      }),\n    );\n\n    // Preserve the message identity and metadata; enrichment only rewrites transcript block text.\n    return Obj.make(Message.Message, {\n      id: message.id,\n      sender: message.sender,\n      created: message.created,\n      properties: message.properties,\n      blocks,\n    });\n  });\n", "//\n// Copyright 2025 DXOS.org\n//\n\nimport * as Schema from 'effect/Schema';\n\nimport { type Database, Filter, Query } from '@dxos/echo';\nimport { EID, EntityId } from '@dxos/keys';\n\nexport const ReferencedQuotes = Schema.Struct({\n  references: Schema.Array(\n    Schema.Struct({\n      id: Schema.String,\n      quote: Schema.String, // TODO(burdon): Quote?\n    }),\n  )\n    .pipe(Schema.mutable)\n    .annotations({\n      // TODO(burdon): Does this description make sense?\n      description: `\n      The references to the context objects that are mentioned in the transcript. \n      Quote should match the original transcript text exactly, while id is the id of the context object.\n    `,\n    }),\n});\nexport type ReferencedQuotes = Schema.Schema.Type<typeof ReferencedQuotes>;\n\nexport type FindReferencesOptions = {\n  /** Search backend. Full-text matches proper nouns precisely; vector matches semantically. */\n  searchKind?: 'full-text' | 'vector';\n};\n\n/**\n * Finds the best-matching context object for each noun and returns it as a reference.\n */\nexport const findReferences = async (\n  nouns: string[],\n  db: Database.Database,\n  { searchKind = 'full-text' }: FindReferencesOptions = {},\n): Promise<ReferencedQuotes> => {\n  // Deduplicate and process longer nouns first: `insertReferences` rewrites case-insensitive\n  // substrings, so a repeated or shorter overlapping noun would re-replace already-linked text and\n  // produce nested/broken markdown links.\n  const normalizedNouns = Array.from(new Set(nouns.map((noun) => noun.trim()).filter((noun) => noun.length > 0))).sort(\n    (leftNoun, rightNoun) => rightNoun.length - leftNoun.length,\n  );\n\n  const references = await Promise.all(\n    normalizedNouns.map(async (noun) => {\n      const objects = await db.query(Query.select(Filter.text(noun, { type: searchKind }))).run();\n      return objects.length > 0 ? [{ id: objects[0].id.toString(), quote: noun }] : [];\n    }),\n  );\n  return { references: references.flat() };\n};\n\n/**\n * Finds and replaces all quotes with DXNs references.\n */\n// TODO(dmaretskyi): Lookup and verifiy ids from provided context.\nexport const insertReferences = (text: string, quotes: ReferencedQuotes): string => {\n  // Process longer quotes first so e.g. \"Sarah Johnson\" is linked before \"Sarah\". Combined with the\n  // link-aware replacement below this stops a shorter or overlapping quote from rewriting text that\n  // is already part of an inserted link (which would produce nested `[[..](..)](..)` markdown).\n  const references = quotes.references\n    .filter((quote) => EntityId.isValid(quote.id))\n    .sort((left, right) => right.quote.length - left.quote.length);\n\n  for (const quote of references) {\n    // Case-insensitive match of the (regex-escaped) quote.\n    const regex = new RegExp(quote.quote.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&'), 'gi');\n    text = replaceOutsideLinks(text, regex, `[${quote.quote}](${EID.make({ entityId: quote.id })})`);\n  }\n\n  return text;\n};\n\nconst MARKDOWN_LINK = /\\[[^\\]]*\\]\\([^)]*\\)/g;\n\n/** Applies a replacement to every span of `text` that is not already inside a `[label](url)` link. */\nconst replaceOutsideLinks = (text: string, regex: RegExp, replacement: string): string => {\n  let result = '';\n  let plainStart = 0;\n  for (const link of text.matchAll(MARKDOWN_LINK)) {\n    const index = link.index ?? 0;\n    result += text.slice(plainStart, index).replace(regex, replacement) + link[0];\n    plainStart = index + link[0].length;\n  }\n  return result + text.slice(plainStart).replace(regex, replacement);\n};\n", "//\n// Copyright 2025 DXOS.org\n//\n\nimport {\n  type TokenClassificationOutput,\n  type TokenClassificationPipelineType,\n  type TokenClassificationSingle,\n  pipeline,\n} from '@xenova/transformers';\n\nimport { log } from '@dxos/log';\n\nlet _ner: Promise<TokenClassificationPipelineType>;\n\n/**\n * Named Entity Recognition pipeline.\n * Initializes the pipeline on first call.\n * @returns The singleton promise that resolves to a token classification pipeline.\n */\nexport const getNer = () => {\n  if (!_ner) {\n    _ner = pipeline('ner', 'Xenova/bert-base-NER').then((ner) => {\n      log.info('NER model is ready');\n      return ner;\n    });\n  }\n\n  return _ner;\n};\n\n/**\n * Extracts entities from text using the named entity recognition pipeline and does simple grouping of tokens.\n */\nexport const extractFullEntities = async (text: string): Promise<TokenClassificationSingle[]> => {\n  const ner = await getNer();\n  const entities = (await ner(text)) as TokenClassificationOutput;\n  const tokenGroups = createTokenGroups(entities);\n  const combinedEntities = tokenGroups.map(combineNerTokens);\n  return combinedEntities;\n};\n\nexport const createTokenGroups = (tokens: TokenClassificationSingle[]): TokenClassificationSingle[][] => {\n  const tokenGroups: TokenClassificationSingle[][] = [];\n\n  const canBeCombined = (prevToken: TokenClassificationSingle, currentToken: TokenClassificationSingle) => {\n    const [currentState, currentEntity] = currentToken.entity.split('-'); // B, I, O\n    const [prevState, prevEntity] = prevToken.entity.split('-'); // B, I, O\n    if (prevEntity !== currentEntity) {\n      return false;\n    }\n    if (prevState === 'O') {\n      return false;\n    }\n    if (currentState === 'I') {\n      return true;\n    }\n    if ((prevState === 'B' || prevState === 'I') && currentState === 'B') {\n      return currentToken.word.startsWith('#');\n    }\n    return false;\n  };\n\n  for (const token of tokens) {\n    if (tokenGroups.length === 0) {\n      tokenGroups.push([token]);\n      continue;\n    }\n    const lastTokenGroup = tokenGroups.at(-1)!;\n    if (canBeCombined(lastTokenGroup.at(-1)!, token)) {\n      lastTokenGroup.push(token);\n      continue;\n    }\n    tokenGroups.push([token]);\n  }\n\n  return tokenGroups;\n};\n\nexport const combineNerTokens = (group: TokenClassificationSingle[]): TokenClassificationSingle => {\n  const combinedToken: TokenClassificationSingle = {\n    entity: group.at(0)!.entity.split('-')[1],\n    score: group.reduce((acc, token) => acc + token.score, 0) / group.length,\n    index: group.at(0)!.index,\n    word: group.at(0)!.word,\n    start: group.at(0)!.start,\n    end: group.at(-1)!.end,\n  };\n\n  for (const token of group.slice(1)) {\n    if (token.word.startsWith('#')) {\n      combinedToken.word += token.word.replace(/^#+/, '');\n    } else {\n      combinedToken.word += ' ' + token.word;\n    }\n  }\n\n  return combinedToken;\n};\n"],
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+  "names": ["LanguageModel", "Effect", "Schema", "AiService", "Obj", "Message", "Schema", "Filter", "Query", "EID", "EntityId", "ReferencedQuotes", "Struct", "references", "Array", "id", "String", "quote", "pipe", "mutable", "annotations", "description", "findReferences", "nouns", "db", "searchKind", "normalizedNouns", "from", "Set", "map", "noun", "trim", "filter", "length", "sort", "leftNoun", "rightNoun", "Promise", "all", "objects", "query", "select", "text", "type", "run", "toString", "flat", "insertReferences", "quotes", "isValid", "left", "right", "regex", "RegExp", "replace", "replaceOutsideLinks", "make", "entityId", "MARKDOWN_LINK", "replacement", "result", "plainStart", "link", "matchAll", "index", "slice", "EXTRACTION_MODEL", "ProperNouns", "Struct", "properNouns", "Array", "String", "annotations", "description", "extractProperNouns", "text", "gen", "value", "scoped", "generateObject", "schema", "prompt", "join", "map", "noun", "trim", "filter", "length", "pipe", "provide", "AiService", "model", "enrichTranscriptMessage", "message", "db", "blocks", "forEach", "block", "_tag", "nouns", "references", "promise", "findReferences", "insertReferences", "Obj", "make", "Message", "id", "sender", "created", "properties", "pipeline", "log", "_ner", "ner", "entities", "text", "tokenGroups", "createTokenGroups", "combinedEntities", "canBeCombined", "prevToken", "currentToken", "currentState", "prevEntity", "entity", "currentEntity", "prevState", "token", "push", "lastTokenGroup", "score", "reduce", "index", "group", "at", "word", "start", "end", "combinedToken"]
 }

package/dist/lib/neutral/index.mjs

@@ -947,12 +947,15 @@ var Request = class {
   _submitMessage = (message) => Effect5.gen(this, function* () {
     this._pending.push(message);
     yield* this._observer.onMessage(message);
+    if (this._options.persist === false) {
+      return message;
+    }
     for (const block of message.blocks) {
       log3("write complete block", {
         messageId: message.id,
         role: message.sender.role,
         block: JSON.stringify(block)
-      }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 59, S: this });
+      }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 62, S: this });
       yield* Trace2.write(CompleteBlock, {
         messageId: message.id,
         role: message.sender.role,
@@ -1014,7 +1017,7 @@ var Request = class {
       },
       pending: this._pending.length,
       history: this._history.length
-    }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 116, S: this });
+    }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 119, S: this });
     const prompt = yield* AiPreprocessor.preprocessPrompt([
       ...this._history,
       ...this._pending
@@ -1041,7 +1044,7 @@ var Request = class {
         log3("emit ephemeral message", {
           id: currentMessageId,
           type: block._tag
-        }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 147, S: this });
+        }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 150, S: this });
         yield* Trace2.write(PartialBlock, {
           messageId: currentMessageId,
           role: "assistant",
@@ -1055,7 +1058,7 @@ var Request = class {
         log3("emit complete message", {
           id,
           type: block._tag
-        }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 161, S: this });
+        }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 164, S: this });
         const message = Obj5.make(Message3.Message, {
           id,
           created: (/* @__PURE__ */ new Date()).toISOString(),
@@ -1074,7 +1077,7 @@ var Request = class {
     }), Stream.filterMap((_) => _), Stream.runCollect, Effect5.map(Chunk.toArray));
     log3("messages", {
       messages
-    }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 181, S: this });
+    }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 184, S: this });
     const toolCalls = this.getToolCalls();
     if (toolCalls.length === 0) {
       this._ended = Date.now();
@@ -1140,7 +1143,7 @@ var Request = class {
       pending: this._pending.length,
       duration: this.duration,
       tools: this._toolCalls
-    }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 244, S: this });
+    }, { "~LogMeta": "~LogMeta", F: __dxlog_file4, L: 247, S: this });
     return this._pending;
   }).pipe(this._semaphore.withPermits(1), Effect5.withSpan("AiRequest.run"));
 };
@@ -1685,6 +1688,7 @@ var Session = class extends Resource2 {
       const request = new AiRequest_exports.Request({
         summarizationThreshold: SUMMARY_THRESHOLD,
         observer: params.observer,
+        persist: params.persist,
         onOutput: (message) => Effect9.promise(() => Runtime2.runPromise(this._runtime)(Feed4.append(this._feed, [
           message
         ])))
@@ -1707,7 +1711,7 @@ var Session = class extends Resource2 {
         });
         log5("toolkit", {
           tools: Record2.keys(toolkit.toolkit.tools)
-        }, { "~LogMeta": "~LogMeta", F: __dxlog_file6, L: 119, S: this });
+        }, { "~LogMeta": "~LogMeta", F: __dxlog_file6, L: 120, S: this });
         const system = yield* formatSystemPrompt({
           system: params.system,
           blueprints: currentBlueprints,
@@ -1728,7 +1732,7 @@ var Session = class extends Resource2 {
         messages: request.pending.length,
         duration: request.duration,
         toolCalls: request.toolCalls
-      }, { "~LogMeta": "~LogMeta", F: __dxlog_file6, L: 138, S: this });
+      }, { "~LogMeta": "~LogMeta", F: __dxlog_file6, L: 139, S: this });
       return [
         ...request.pending
       ];
@@ -1793,14 +1797,14 @@ var connectMcpServers = (blueprints, spaceMcpServers = []) => {
     Effect9.tap((toolkit) => log5.info("Connected to MCP server", {
       url: options.url,
       tools: Object.keys(toolkit.toolkit.tools).length
-    }, { "~LogMeta": "~LogMeta", F: __dxlog_file6, L: 202, S: void 0 })),
+    }, { "~LogMeta": "~LogMeta", F: __dxlog_file6, L: 203, S: void 0 })),
     // Surface typed connection failures via ephemeral trace + warn log, then drop the server.
     Effect9.tapError((error) => Effect9.gen(function* () {
       log5.warn("Failed to connect to MCP server", {
         url: error.url,
         protocol: error.protocol,
         message: error.message
-      }, { "~LogMeta": "~LogMeta", F: __dxlog_file6, L: 207, S: this });
+      }, { "~LogMeta": "~LogMeta", F: __dxlog_file6, L: 208, S: this });
       yield* Trace3.write(McpServerError, {
         url: error.url,
         protocol: error.protocol,
@@ -1814,7 +1818,7 @@ var connectMcpServers = (blueprints, spaceMcpServers = []) => {
       log5.warn("Unexpected MCP defect", {
         url: options.url,
         message
-      }, { "~LogMeta": "~LogMeta", F: __dxlog_file6, L: 221, S: this });
+      }, { "~LogMeta": "~LogMeta", F: __dxlog_file6, L: 222, S: this });
       yield* Trace3.write(McpServerError, {
         url: options.url,
         protocol: options.protocol,
@@ -1834,10 +1838,10 @@ var connectMcpServers = (blueprints, spaceMcpServers = []) => {
 import defaultsDeep from "lodash.defaultsdeep";
 import { Template as Template2 } from "@dxos/compute";
 
-// raw-loader:/__w/dxos/dxos/packages/core/compute/assistant/src/templates/instructions/format.tpl?raw
+// raw-loader:/__w/dxos/dxos/packages/core/compute/assistant/src/templates/instructions/format.tpl
 var format_default = "{{! System Core }}\n\n## Input Formats\n\n### Blueprints\n\nYou may be provided with Blueprint definitions that include specific instructions and tools for a given set of tasks.\nBlue print instructions will be enclosed in a <blueprint> tag.\n\n### Context objects\n\nYou may be provided with references to objects that are relevant to the current prompt.\nObjects will be in the form of a <object> tag with a <dxn> element that is the unique key of the object required by many tools.\nThe <typename> element is the type of the object.\n\n<object>\n  <dxn>object-id</dxn>\n  <typename>example.com/type/TypeName</typename>\n</object>\n\n## Response Formats\n\nIt is very important to respond in the correct format.\nYou response must be valid Markdown.\nIn some cases you should respond with well-formed XML tags along with the content.\nCode snippets should use 2-space indents.\n\n{{#if cot}}\nBefore responding, explain your reasoning and include your detailed chain-of-thought enclosed in a <cot> tag.\nThe <cot> tag should be the first thing in your response.\n{{/if}}\n\n## Block references\n\nYou can reply with a block reference for objects if you have the DXN. For example:\n\n<object>\n  <dxn>dxn:queue:data:B6INSIBY3CBEF4M5VZRYBCMAHQMPYK5AJ:01K24XMVHSZHS97SG1VTVQDM5Z:01K24XPK464FSCKVQJAB2H662M</dxn>\n</object>\n<object>\n  <dxn>dxn:echo:@:01K24XPK464FSCKVQJAB2H662M</dxn>\n</object>\n\n### Suggestions\n\nEach suggestion must in the form of a proposed action enclosed in a <suggestion> tag.\nExample: <suggestion>Show on a map</suggestion>\nDo not use bullets when listing suggestions.\n\n### Multiple choice questions\n\nYou may ask multiple choice questions by wrapping consise options inside <option> tags inside a well formed <select> tag.\nExample: <select><option>Yes</option><option>No</option></select>\n\n## Context\n\nThe current date and time is {{DATETIME}}.\n";
 
-// raw-loader:/__w/dxos/dxos/packages/core/compute/assistant/src/templates/instructions/system.tpl?raw
+// raw-loader:/__w/dxos/dxos/packages/core/compute/assistant/src/templates/instructions/system.tpl
 var system_default = "{{! System Prompt }}\n\n- You are a helpful assistant called Kai. \n- Your name is Kai and you are powered by different language models.\n- You were created by DXOS and operate inside of Composer and on the DXOS EDGE network.\n- In your initial greeting state your name and make some suggestions based on the current context objects.\n- You are an advanced AI assistant capable of creating and managing artifacts from provided data and tools.\n- Your task is to process user commands and questions and decide how best to respond.\n- In general be concise and direct.\n- Follow all instructions carefully.\n\n## Planning\n\n- Analyze the structure and type of the content in the user's message.\n- Determine if you complete the task using the available blueprint definitions?\n- If you can't complete the task using the available blueprint definitions, query the list of available blueprint definitions using the appropriate tool.\n- Identify which blueprint definitions are relevant to the user's request.\n- Evaluate the potential benefits of creating an artifact vs. normal processing for each identified element.\n- Make a final decision on whether to create an artifact and explain your reasoning.\n- Are the required blueprint definitions already available?\n- If not, select which blueprint definition(s) will be the most relevant and require them using the require_artifact_definitions tool.\n- The require'd artifact tools will be available for use after require.\n- If creating an artifact, outline how you will structure it within the response.\n- Decide if the artifact needs to be shown to the user.\n- Call the show tool to show the artifact to the user.\n- Your reasoning must include: whether to use artifacts or not, to create one or query, whether to show the artifact to the user, and how to structure the response.\n\n## Blueprints and Artifacts\n\n- Determine if the interaction involves an artifact. Prefer artifacts for tables, lists, spreadsheets, kanbans, games, images, and other structured data.\n- Determine if the user is explicitly talking about creating a new artifact, or wants to use an existing artifact.\n- If it is ambiguous, query for existing artifacts first and then decide.\n- If you decide to create an artifact, call the associated tool to create the artifact.\n- Artifacts are stored in the database. Tools are used to create and query artifacts.\n- If you are unsure about creating an artifact ask the user for clarification.\n- Artifacts are mutable objects that can change over the course of the conversation.\n- Always re-query the artifact using the tool (like query or inspect) to get the latest state of the artifact before answering the user.\n- You must never generate the id of the artifact; only recall the ids that are already in the history.\n- Artifacts are created by requiring the specific artifact using the require_artifact tool and creating it by calling the associated tool.\n- You can add suggested actions at the end of your response.\n- Suggested actions should be very concise and start with a verb and be phrased as a command to an agent -- not a question to the user.\n- Suggested actions must be in the form of a user instruction that you can follow.\n- Suggested actions could include actions that create artifacts.\n- After creating an artifact use a tool to add it to the chat context.\n\n## Navigation\n\n- When the user asks to open, go to, navigate to, or show a specific document, page, or object, use the navigation tools instead of loading content inline.\n- First, call the Resolve navigation targets tool to find the navigation path for the requested item.\n  - Without arguments, it returns available pages that can be navigated to.\n  - With a DXN in the query, it resolves that specific object to a navigation path.\n- If you know the object's DXN (e.g. from a database query or context objects), pass it in the query to get the exact navigation path.\n- Then, call the Open tool with the resolved navigation path(s) in the subject array to navigate the user to that item.\n- Do not respond with the document's content when the user asks to open it \u2014 open it in the main content area instead.\n- If multiple targets match, present the options to the user and let them choose which to open.\n\n## Response format\n\n- NEVER output narration text outside `<status>` tags or the final user-facing answer. Any progress update, transition sentence, or \"let me\u2026\" lead-in MUST be wrapped in `<status>...</status>`. Violating this is an error.\n- When updating the user about the progress of the work you are doing, put the update in a <status> XML tag.\n- Only when you need to show the result to the user or ask a question use a text block without status tags.\n- After a `</status>` tag, the next output must be either another `<status>` tag, a tool call, or the final user-facing answer \u2014 never a transition sentence.\n\n<example>\n// reasoning...\n<status>Looking for emails from Depot</status>\n// tool call..\n<status>Found 2 emails from Depot.</status>\n<status>Loading email details</status>\n// tool call\n<status>Located mailbox</status>\nI found **2 emails from Depot**:\n</example>\n\nDo not do (no status tags):\n\n<incorrect_example>\n// reasoning...\n// tool call..\nI found 2 emails from Depot. Let me load their details:\n// tool call\nI found **2 emails from Depot**:\n</incorrect_example>\n\nDo not do (transition sentence after a status tag, before tool calls):\n\n<incorrect_example>\n<status>Doing X</status>\nLet me start by doing X:\n// tool call\n</incorrect_example>\n\n- NEVER write a lead-in sentence before a tool call. Use a `<status>` tag instead.\n- Avoid using plain text to tell the user what you are about to do; instead, use status blocks.\n- WRONG: Let me get...\n- CORRECT: <status>Getting...</status>";
 
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