@dxos/assistant 0.8.4-main.fd6878d → 0.8.4-main.fffef41

package/dist/lib/browser/chunk-J5LGTIGS.mjs

@@ -0,0 +1,10 @@
+var __defProp = Object.defineProperty;
+var __export = (target, all) => {
+  for (var name in all)
+    __defProp(target, name, { get: all[name], enumerable: true });
+};
+
+export {
+  __export
+};
+//# sourceMappingURL=chunk-J5LGTIGS.mjs.map

package/dist/lib/browser/extraction/index.mjs

@@ -1,22 +1,14 @@
-import {
-  AiSession
-} from "../chunk-NZGGCEF3.mjs";
-import {
-  combineNerTokens,
-  createTokenGroups,
-  extractFullEntities,
-  getNer
-} from "../chunk-6WRGDEMH.mjs";
+import "../chunk-J5LGTIGS.mjs";
 
 // src/extraction/extraction.ts
-import { Schema } from "effect";
+import * as Schema from "effect/Schema";
 import { asyncTimeout } from "@dxos/async";
-import { Expando } from "@dxos/echo-schema";
+import { Expando } from "@dxos/echo/internal";
 import { log } from "@dxos/log";
-import { DataType } from "@dxos/schema";
+import { Message } from "@dxos/types";
 var __dxlog_file = "/__w/dxos/dxos/packages/core/assistant/src/extraction/extraction.ts";
 var ExtractionInput = Schema.Struct({
-  message: DataType.Message,
+  message: Message.Message,
   objects: Schema.optional(Schema.Array(Expando)),
   options: Schema.optional(Schema.Struct({
     timeout: Schema.optional(Schema.Number),
@@ -24,7 +16,7 @@ var ExtractionInput = Schema.Struct({
   }))
 });
 var ExtractionOutput = Schema.Struct({
-  message: DataType.Message,
+  message: Message.Message,
   timeElapsed: Schema.Number
 });
 var processTranscriptMessage = async (params) => {
@@ -40,7 +32,7 @@ var processTranscriptMessage = async (params) => {
         error
       }, {
         F: __dxlog_file,
-        L: 66,
+        L: 67,
         S: void 0,
         C: (f, a) => f(...a)
       });
@@ -55,19 +47,120 @@ var processTranscriptMessage = async (params) => {
 };
 
 // src/extraction/extraction-llm-function/extraction-llm-function.ts
-import { AiService, ToolRegistry } from "@dxos/ai";
-import { Obj } from "@dxos/echo";
-import { create } from "@dxos/echo-schema";
 import { defineFunction } from "@dxos/functions";
-import { DataType as DataType2 } from "@dxos/schema";
+var extractionAnthropicFunction = defineFunction({
+  key: "dxos.org/function/extraction/extract-entities",
+  name: "Extract Entities",
+  description: "Extract entities from the transcript message and add them to the message.",
+  inputSchema: ExtractionInput,
+  outputSchema: ExtractionOutput,
+  handler: async ({ data: { message, objects }, context }) => {
+    throw new Error("not implemented");
+  }
+});
+
+// src/extraction/extraction-ner-function/extraction-ner-function.ts
+import { defineFunction as defineFunction2 } from "@dxos/functions";
+var extractionNerFunction = defineFunction2({
+  key: "dxos.org/function/extraction/extract-entities",
+  name: "Extract Entities",
+  description: "Extracts named entities from a text",
+  inputSchema: ExtractionInput,
+  outputSchema: ExtractionOutput,
+  handler: async ({ data: { message, options }, context }) => {
+    throw new Error("not implemented");
+  }
+});
+
+// src/extraction/extraction-ner-function/named-entity-recognition.ts
+import { pipeline } from "@xenova/transformers";
+import { log as log2 } from "@dxos/log";
+var __dxlog_file2 = "/__w/dxos/dxos/packages/core/assistant/src/extraction/extraction-ner-function/named-entity-recognition.ts";
+var _ner;
+var getNer = () => {
+  if (!_ner) {
+    _ner = pipeline("ner", "Xenova/bert-base-NER").then((ner) => {
+      log2.info("NER model is ready", void 0, {
+        F: __dxlog_file2,
+        L: 24,
+        S: void 0,
+        C: (f, a) => f(...a)
+      });
+      return ner;
+    });
+  }
+  return _ner;
+};
+var extractFullEntities = async (text) => {
+  const ner = await getNer();
+  const entities = await ner(text);
+  const tokenGroups = createTokenGroups(entities);
+  const combinedEntities = tokenGroups.map(combineNerTokens);
+  return combinedEntities;
+};
+var createTokenGroups = (tokens) => {
+  const tokenGroups = [];
+  const canBeCombined = (prevToken, currentToken) => {
+    const [currentState, currentEntity] = currentToken.entity.split("-");
+    const [prevState, prevEntity] = prevToken.entity.split("-");
+    if (prevEntity !== currentEntity) {
+      return false;
+    }
+    if (prevState === "O") {
+      return false;
+    }
+    if (currentState === "I") {
+      return true;
+    }
+    if ((prevState === "B" || prevState === "I") && currentState === "B") {
+      return currentToken.word.startsWith("#");
+    }
+    return false;
+  };
+  for (const token of tokens) {
+    if (tokenGroups.length === 0) {
+      tokenGroups.push([
+        token
+      ]);
+      continue;
+    }
+    const lastTokenGroup = tokenGroups.at(-1);
+    if (canBeCombined(lastTokenGroup.at(-1), token)) {
+      lastTokenGroup.push(token);
+      continue;
+    }
+    tokenGroups.push([
+      token
+    ]);
+  }
+  return tokenGroups;
+};
+var combineNerTokens = (group) => {
+  const combinedToken = {
+    entity: group.at(0).entity.split("-")[1],
+    score: group.reduce((acc, token) => acc + token.score, 0) / group.length,
+    index: group.at(0).index,
+    word: group.at(0).word,
+    start: group.at(0).start,
+    end: group.at(-1).end
+  };
+  for (const token of group.slice(1)) {
+    if (token.word.startsWith("#")) {
+      combinedToken.word += token.word.replace(/^#+/, "");
+    } else {
+      combinedToken.word += " " + token.word;
+    }
+  }
+  return combinedToken;
+};
 
 // src/extraction/quotes.ts
-import { Schema as Schema2 } from "effect";
+import * as Schema2 from "effect/Schema";
 import { Filter, Query } from "@dxos/echo";
-import { ObjectId } from "@dxos/echo-schema";
+import { ObjectId } from "@dxos/echo/internal";
 import { DXN } from "@dxos/keys";
-import { log as log2 } from "@dxos/log";
-var __dxlog_file2 = "/__w/dxos/dxos/packages/core/assistant/src/extraction/quotes.ts";
+import { log as log3 } from "@dxos/log";
+var __dxlog_file3 = "/__w/dxos/dxos/packages/core/assistant/src/extraction/quotes.ts";
 var ReferencedQuotes = Schema2.Struct({
   references: Schema2.Array(Schema2.Struct({
     id: Schema2.String,
@@ -85,11 +178,11 @@ var findQuotes = async (quotes, db) => {
     const { objects } = await db.query(Query.select(Filter.text(quote, {
       type: "vector"
     }))).run();
-    log2.info("found quotes in vector index", {
+    log3.info("found quotes in vector index", {
       objects,
       quote
     }, {
-      F: __dxlog_file2,
+      F: __dxlog_file3,
       L: 35,
       S: void 0,
       C: (f, a) => f(...a)
@@ -111,147 +204,10 @@ var insertReferences = (text, quotes) => {
       continue;
     }
     const regex = new RegExp(quote.quote.replace(/[.*+?^${}()|[\]\\]/g, "\\$&"), "gi");
-    text = text.replace(regex, `[${quote.quote}][${DXN.fromLocalObjectId(quote.id).toString()}]`);
+    text = text.replace(regex, `[${quote.quote}](${DXN.fromLocalObjectId(quote.id).toString()})`);
   }
   return text;
 };
-
-// raw-loader:./instructions.tpl?raw
-var instructions_default = 'You are an AI assistant specialized in processing and enhancing transcripts with contextual information.\nYour task is to analyze a given transcript and extract references to the context objects.\n\nThe context and transcript are provided in the user message in `context` and `transcript` XML tags.\n\nHere are your instructions:\n\n1. Read the transcript and context information provided above.\n\n2. Process each segment of the transcript separately.\n\n3. For each segment:\n   a. Analyze the content and identify relevant information from the context.\n   b. Extract a number of references to the context objects that are mentioned in the segment.\n   c. Output the references in the format `{ "quote": "earnings report", "id": "01JT0JP9AX0XKGZX4MV4B69VT6" }`.\n   d. If there are no references, just output an empty array.\n\n4. Maintain the exact order and structure of the original transcript segments.\n\nOutput Format:\nYou have been provided with a tool that specifies output format\n\nRemember:\n- Only quote the text that is in the transcript.\n- Analyze each segment carefully before processing it.\n- Only reference objects that appear in the context and exactly by their id, If the object is not in the context, do not insert a reference. \n\nNow, process the transcript and context provided below according to these instructions.';
-
-// src/extraction/extraction-llm-function/extraction-llm-function.ts
-var extractionAnthropicFn = defineFunction({
-  description: "Extract entities from the transcript message and add them to the message.",
-  inputSchema: ExtractionInput,
-  outputSchema: ExtractionOutput,
-  handler: async ({ data: { message, objects }, context }) => {
-    const startTime = performance.now();
-    const ai = context.getService(AiService.AiService);
-    const session = new AiSession({
-      operationModel: "configured"
-    });
-    const result = await session.runStructured(ReferencedQuotes, {
-      generationOptions: {
-        model: "@anthropic/claude-3-5-haiku-20241022"
-      },
-      client: ai.client,
-      systemPrompt: instructions_default,
-      history: [
-        Obj.make(DataType2.Message, {
-          created: (/* @__PURE__ */ new Date()).toISOString(),
-          sender: {
-            role: "user"
-          },
-          blocks: [
-            {
-              _tag: "text",
-              text: `<context>${JSON.stringify(objects)}</context>`
-            },
-            {
-              _tag: "text",
-              text: `<transcript>${JSON.stringify(message.blocks)}</transcript>`
-            }
-          ]
-        })
-      ],
-      artifacts: [],
-      prompt: "",
-      tools: [],
-      toolResolver: new ToolRegistry([])
-    });
-    return {
-      message: create(DataType2.Message, {
-        ...message,
-        blocks: message.blocks.map((block, i) => block._tag !== "transcript" ? block : {
-          ...block,
-          text: insertReferences(block.text, result)
-        })
-      }),
-      timeElapsed: performance.now() - startTime
-    };
-  }
-});
-
-// src/extraction/extraction-ner-function/extraction-ner-function.ts
-import { asyncTimeout as asyncTimeout2 } from "@dxos/async";
-import { create as create2 } from "@dxos/echo-schema";
-import { DatabaseService, defineFunction as defineFunction2 } from "@dxos/functions";
-import { invariant } from "@dxos/invariant";
-import { log as log3 } from "@dxos/log";
-import { DataType as DataType3 } from "@dxos/schema";
-var __dxlog_file3 = "/__w/dxos/dxos/packages/core/assistant/src/extraction/extraction-ner-function/extraction-ner-function.ts";
-var extractionNerFn = defineFunction2({
-  description: "Extracts named entities from a text",
-  inputSchema: ExtractionInput,
-  outputSchema: ExtractionOutput,
-  handler: async ({ data: { message, options }, context }) => {
-    log3.info("input", {
-      message,
-      options
-    }, {
-      F: __dxlog_file3,
-      L: 24,
-      S: void 0,
-      C: (f, a) => f(...a)
-    });
-    const startTime = performance.now();
-    const { db } = context.getService(DatabaseService);
-    const { extractFullEntities: extractFullEntities2 } = await import("../named-entity-recognition-O46UTCLR.mjs");
-    const entitiesPromise = Promise.all(message.blocks.map(async (block) => {
-      invariant(block._tag === "transcript" || block._tag === "text", "Block must have text", {
-        F: __dxlog_file3,
-        L: 31,
-        S: void 0,
-        A: [
-          "block._tag === 'transcript' || block._tag === 'text'",
-          "'Block must have text'"
-        ]
-      });
-      return extractFullEntities2(block.text);
-    })).then((entities2) => entities2.flat());
-    const entities = options?.timeout ? await asyncTimeout2(entitiesPromise, options.timeout) : await entitiesPromise;
-    log3.info("entities", {
-      entities
-    }, {
-      F: __dxlog_file3,
-      L: 36,
-      S: void 0,
-      C: (f, a) => f(...a)
-    });
-    const quoteReferences = await findQuotes(entities.map((entity) => entity.word), db);
-    const blocksWithReferences = message.blocks.map((block, i) => {
-      invariant(block._tag === "transcript" || block._tag === "text", "Block must have text", {
-        F: __dxlog_file3,
-        L: 42,
-        S: void 0,
-        A: [
-          "block._tag === 'transcript' || block._tag === 'text'",
-          "'Block must have text'"
-        ]
-      });
-      return {
-        ...block,
-        text: insertReferences(block._tag, quoteReferences)
-      };
-    });
-    const messageWithReferences = create2(DataType3.Message, {
-      ...message,
-      blocks: blocksWithReferences
-    });
-    log3.info("output", {
-      messageWithReferences
-    }, {
-      F: __dxlog_file3,
-      L: 50,
-      S: void 0,
-      C: (f, a) => f(...a)
-    });
-    return {
-      message: messageWithReferences,
-      timeElapsed: performance.now() - startTime
-    };
-  }
-});
 export {
   ExtractionInput,
   ExtractionOutput,
@@ -259,8 +215,8 @@ export {
   combineNerTokens,
   createTokenGroups,
   extractFullEntities,
-  extractionAnthropicFn,
-  extractionNerFn,
+  extractionAnthropicFunction,
+  extractionNerFunction,
   findQuotes,
   getNer,
   insertReferences,

package/dist/lib/browser/extraction/index.mjs.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
-  "sources": ["../../../../src/extraction/extraction.ts", "../../../../src/extraction/extraction-llm-function/extraction-llm-function.ts", "../../../../src/extraction/quotes.ts", "raw-loader:./instructions.tpl?raw", "../../../../src/extraction/extraction-ner-function/extraction-ner-function.ts"],
-  "sourcesContent": ["//\n// Copyright 2025 DXOS.org\n//\n\nimport { Schema } from 'effect';\n\nimport { asyncTimeout } from '@dxos/async';\nimport { Expando } from '@dxos/echo-schema';\nimport { type FunctionDefinition, type FunctionExecutor } from '@dxos/functions';\nimport { log } from '@dxos/log';\nimport { DataType } from '@dxos/schema';\n\nexport const ExtractionInput = Schema.Struct({\n  message: DataType.Message,\n  objects: Schema.optional(Schema.Array(Expando)),\n  options: Schema.optional(\n    Schema.Struct({\n      timeout: Schema.optional(Schema.Number),\n      fallbackToRaw: Schema.optional(Schema.Boolean),\n    }),\n  ),\n});\nexport interface ExtractionInput extends Schema.Schema.Type<typeof ExtractionInput> {}\n\nexport const ExtractionOutput = Schema.Struct({\n  message: DataType.Message,\n  timeElapsed: Schema.Number,\n});\nexport interface ExtractionOutput extends Schema.Schema.Type<typeof ExtractionOutput> {}\n\nexport type ProcessTranscriptMessageParams = {\n  input: ExtractionInput;\n  function: FunctionDefinition<ExtractionInput, ExtractionOutput>;\n  executor: FunctionExecutor;\n\n  options?: {\n    /**\n     * Timeout for the entity extraction.\n     */\n    timeout?: number;\n\n    /**\n     * Fallback to raw text if the entity extraction fails.\n     * Otherwise the function will throw an error.\n     * @default false\n     */\n    fallbackToRaw?: boolean;\n  };\n};\n\nexport type ExtractionFunction = FunctionDefinition<ExtractionInput, ExtractionOutput>;\n\n/**\n * Extract entities from the transcript message and add them to the message.\n */\n// TODO(dmaretskyi): Move context to a vector search index.\nexport const processTranscriptMessage = async (params: ProcessTranscriptMessageParams): Promise<ExtractionOutput> => {\n  try {\n    if (params.options?.timeout && params.options.timeout > 0) {\n      return await asyncTimeout(params.executor.invoke(params.function, params.input), params.options.timeout);\n    } else {\n      return await params.executor.invoke(params.function, params.input);\n    }\n  } catch (error) {\n    if (params.options?.fallbackToRaw) {\n      log.warn('failed to process message, falling back to raw text', { error });\n      return {\n        message: params.input.message,\n        timeElapsed: 0,\n      };\n    } else {\n      throw error;\n    }\n  }\n};\n", "//\n// Copyright 2025 DXOS.org\n//\n\n// ISSUE(burdon): defineFunction\n// @ts-nocheck\n\nimport { AiService, ToolRegistry } from '@dxos/ai';\nimport { Obj } from '@dxos/echo';\nimport { create } from '@dxos/echo-schema';\nimport { type FunctionDefinition, defineFunction } from '@dxos/functions';\nimport { type ContentBlock, DataType } from '@dxos/schema';\n\nimport { AiSession } from '../../session';\nimport { ExtractionInput, ExtractionOutput } from '../extraction';\nimport { ReferencedQuotes, insertReferences } from '../quotes';\n\nimport PROMPT from './instructions.tpl?raw';\n\nexport const extractionAnthropicFn: FunctionDefinition<ExtractionInput, ExtractionOutput> = defineFunction({\n  description: 'Extract entities from the transcript message and add them to the message.',\n  inputSchema: ExtractionInput,\n  outputSchema: ExtractionOutput,\n  handler: async ({ data: { message, objects }, context }) => {\n    const startTime = performance.now();\n    const ai = context.getService(AiService.AiService);\n    const session = new AiSession({ operationModel: 'configured' });\n    const result = await session.runStructured(ReferencedQuotes, {\n      generationOptions: {\n        model: '@anthropic/claude-3-5-haiku-20241022',\n      },\n      client: ai.client,\n      systemPrompt: PROMPT,\n      history: [\n        Obj.make(DataType.Message, {\n          created: new Date().toISOString(),\n          sender: { role: 'user' },\n          blocks: [\n            {\n              _tag: 'text',\n              text: `<context>${JSON.stringify(objects)}</context>`,\n            } satisfies ContentBlock.Text,\n            {\n              _tag: 'text',\n              text: `<transcript>${JSON.stringify(message.blocks)}</transcript>`,\n            } satisfies ContentBlock.Text,\n          ],\n        }),\n      ],\n      artifacts: [],\n      prompt: '',\n      tools: [],\n      toolResolver: new ToolRegistry([]),\n    } as any); // TODO(burdon): Rewrite test.\n\n    return {\n      message: create(DataType.Message, {\n        ...message,\n        blocks: message.blocks.map((block, i) =>\n          block._tag !== 'transcript'\n            ? block\n            : {\n                ...block,\n                text: insertReferences(block.text, result),\n              },\n        ),\n      }),\n      timeElapsed: performance.now() - startTime,\n    };\n  },\n});\n", "//\n// Copyright 2025 DXOS.org\n//\n\nimport { Schema } from 'effect';\n\nimport { Filter, Query } from '@dxos/echo';\nimport { type EchoDatabase } from '@dxos/echo-db';\nimport { ObjectId } from '@dxos/echo-schema';\nimport { DXN } from '@dxos/keys';\nimport { log } from '@dxos/log';\n\nexport const ReferencedQuotes = Schema.Struct({\n  references: Schema.Array(\n    Schema.Struct({\n      id: Schema.String,\n      quote: Schema.String, // TODO(burdon): Quote?\n    }),\n  )\n    .pipe(Schema.mutable)\n    .annotations({\n      // TODO(burdon): Does this description make sense?\n      description: `\n      The references to the context objects that are mentioned in the transcript. \n      Quote should match the original transcript text exactly, while id is the id of the context object.\n    `,\n    }),\n});\nexport type ReferencedQuotes = Schema.Schema.Type<typeof ReferencedQuotes>;\n\nexport const findQuotes = async (quotes: string[], db: EchoDatabase): Promise<ReferencedQuotes> => {\n  const references = await Promise.all(\n    quotes.map(async (quote) => {\n      const { objects } = await db.query(Query.select(Filter.text(quote, { type: 'vector' }))).run();\n      log.info('found quotes in vector index', { objects, quote });\n      return objects.length > 0 ? [{ id: objects[0].id.toString(), quote }] : [];\n    }),\n  );\n  return { references: references.flat() };\n};\n\n/**\n * Finds and replaces all quotes with DXNs references.\n */\n// TODO(dmaretskyi): Lookup and verifiy ids from provided context.\nexport const insertReferences = (text: string, quotes: ReferencedQuotes) => {\n  for (const quote of quotes.references) {\n    if (!ObjectId.isValid(quote.id)) {\n      continue;\n    }\n\n    // Use a case-insensitive regular expression to replace the quote.\n    const regex = new RegExp(quote.quote.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&'), 'gi');\n    text = text.replace(regex, `[${quote.quote}][${DXN.fromLocalObjectId(quote.id).toString()}]`);\n  }\n\n  return text;\n};\n", "You are an AI assistant specialized in processing and enhancing transcripts with contextual information.\nYour task is to analyze a given transcript and extract references to the context objects.\n\nThe context and transcript are provided in the user message in `context` and `transcript` XML tags.\n\nHere are your instructions:\n\n1. Read the transcript and context information provided above.\n\n2. Process each segment of the transcript separately.\n\n3. For each segment:\n   a. Analyze the content and identify relevant information from the context.\n   b. Extract a number of references to the context objects that are mentioned in the segment.\n   c. Output the references in the format `{ \"quote\": \"earnings report\", \"id\": \"01JT0JP9AX0XKGZX4MV4B69VT6\" }`.\n   d. If there are no references, just output an empty array.\n\n4. Maintain the exact order and structure of the original transcript segments.\n\nOutput Format:\nYou have been provided with a tool that specifies output format\n\nRemember:\n- Only quote the text that is in the transcript.\n- Analyze each segment carefully before processing it.\n- Only reference objects that appear in the context and exactly by their id, If the object is not in the context, do not insert a reference. \n\nNow, process the transcript and context provided below according to these instructions.", "//\n// Copyright 2025 DXOS.org\n//\n\n// ISSUE(burdon): defineFunction\n// @ts-nocheck\n\nimport { asyncTimeout } from '@dxos/async';\nimport { create } from '@dxos/echo-schema';\nimport { DatabaseService, defineFunction } from '@dxos/functions';\nimport { invariant } from '@dxos/invariant';\nimport { log } from '@dxos/log';\nimport { DataType } from '@dxos/schema';\n\nimport { ExtractionInput, ExtractionOutput } from '../extraction';\nimport { findQuotes, insertReferences } from '../quotes';\n\n// TODO(mykola): Make it use vector index to query objects and not pass objects as input.\nexport const extractionNerFn = defineFunction({\n  description: 'Extracts named entities from a text',\n  inputSchema: ExtractionInput,\n  outputSchema: ExtractionOutput,\n  handler: async ({ data: { message, options }, context }) => {\n    log.info('input', { message, options });\n    const startTime = performance.now();\n    const { db } = context.getService(DatabaseService);\n    const { extractFullEntities } = await import('./named-entity-recognition');\n\n    const entitiesPromise = Promise.all(\n      message.blocks.map(async (block) => {\n        invariant(block._tag === 'transcript' || block._tag === 'text', 'Block must have text');\n        return extractFullEntities(block.text);\n      }),\n    ).then((entities) => entities.flat());\n    const entities = options?.timeout ? await asyncTimeout(entitiesPromise, options.timeout) : await entitiesPromise;\n    log.info('entities', { entities });\n    const quoteReferences = await findQuotes(\n      entities.map((entity) => entity.word),\n      db,\n    );\n    const blocksWithReferences = message.blocks.map((block, i) => {\n      invariant(block._tag === 'transcript' || block._tag === 'text', 'Block must have text');\n      return { ...block, text: insertReferences(block._tag, quoteReferences) };\n    });\n    const messageWithReferences = create(DataType.Message, {\n      ...message,\n      blocks: blocksWithReferences,\n    });\n\n    log.info('output', { messageWithReferences });\n\n    return {\n      message: messageWithReferences,\n      timeElapsed: performance.now() - startTime,\n    };\n  },\n});\n"],
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+  "sources": ["../../../../src/extraction/extraction.ts", "../../../../src/extraction/extraction-llm-function/extraction-llm-function.ts", "../../../../src/extraction/extraction-ner-function/extraction-ner-function.ts", "../../../../src/extraction/extraction-ner-function/named-entity-recognition.ts", "../../../../src/extraction/quotes.ts"],
+  "sourcesContent": ["//\n// Copyright 2025 DXOS.org\n//\n\nimport * as Schema from 'effect/Schema';\n\nimport { asyncTimeout } from '@dxos/async';\nimport { Expando } from '@dxos/echo/internal';\nimport { type FunctionDefinition } from '@dxos/functions';\nimport { type FunctionExecutor } from '@dxos/functions-runtime';\nimport { log } from '@dxos/log';\nimport { Message } from '@dxos/types';\n\nexport const ExtractionInput = Schema.Struct({\n  message: Message.Message,\n  objects: Schema.optional(Schema.Array(Expando)),\n  options: Schema.optional(\n    Schema.Struct({\n      timeout: Schema.optional(Schema.Number),\n      fallbackToRaw: Schema.optional(Schema.Boolean),\n    }),\n  ),\n});\nexport interface ExtractionInput extends Schema.Schema.Type<typeof ExtractionInput> {}\n\nexport const ExtractionOutput = Schema.Struct({\n  message: Message.Message,\n  timeElapsed: Schema.Number,\n});\nexport interface ExtractionOutput extends Schema.Schema.Type<typeof ExtractionOutput> {}\n\nexport type ProcessTranscriptMessageParams = {\n  input: ExtractionInput;\n  function: FunctionDefinition<ExtractionInput, ExtractionOutput>;\n  executor: FunctionExecutor;\n\n  options?: {\n    /**\n     * Timeout for the entity extraction.\n     */\n    timeout?: number;\n\n    /**\n     * Fallback to raw text if the entity extraction fails.\n     * Otherwise the function will throw an error.\n     * @default false\n     */\n    fallbackToRaw?: boolean;\n  };\n};\n\nexport type ExtractionFunction = FunctionDefinition<ExtractionInput, ExtractionOutput>;\n\n/**\n * Extract entities from the transcript message and add them to the message.\n */\n// TODO(dmaretskyi): Move context to a vector search index.\nexport const processTranscriptMessage = async (params: ProcessTranscriptMessageParams): Promise<ExtractionOutput> => {\n  try {\n    if (params.options?.timeout && params.options.timeout > 0) {\n      return await asyncTimeout(params.executor.invoke(params.function, params.input), params.options.timeout);\n    } else {\n      return await params.executor.invoke(params.function, params.input);\n    }\n  } catch (error) {\n    if (params.options?.fallbackToRaw) {\n      log.warn('failed to process message, falling back to raw text', { error });\n      return {\n        message: params.input.message,\n        timeElapsed: 0,\n      };\n    } else {\n      throw error;\n    }\n  }\n};\n", "//\n// Copyright 2025 DXOS.org\n//\n\nimport { type FunctionDefinition, defineFunction } from '@dxos/functions';\n\nimport { ExtractionInput, ExtractionOutput } from '../extraction';\n\nexport const extractionAnthropicFunction: FunctionDefinition<ExtractionInput, ExtractionOutput> = defineFunction({\n  key: 'dxos.org/function/extraction/extract-entities',\n  name: 'Extract Entities',\n  description: 'Extract entities from the transcript message and add them to the message.',\n  inputSchema: ExtractionInput,\n  outputSchema: ExtractionOutput,\n  handler: async ({ data: { message, objects }, context }) => {\n    throw new Error('not implemented');\n    // const startTime = performance.now();\n    // const ai = context.getService(AiService.AiService);\n    // const session = new AiSession({ operationModel: 'configured' });\n    // const result = await session.runStructured(ReferencedQuotes, {\n    //   generationOptions: {\n    //     model: '@anthropic/claude-3-5-haiku-20241022',\n    //   },\n    //   client: ai.client,\n    //   systemPrompt: PROMPT,\n    //   history: [\n    //     Obj.make(DataType.Message.Message, {\n    //       created: new Date().toISOString(),\n    //       sender: { role: 'user' },\n    //       blocks: [\n    //         {\n    //           _tag: 'text',\n    //           text: `<context>${JSON.stringify(objects)}</context>`,\n    //         } satisfies DataType.ContentBlock.Text,\n    //         {\n    //           _tag: 'text',\n    //           text: `<transcript>${JSON.stringify(message.blocks)}</transcript>`,\n    //         } satisfies DataType.ContentBlock.Text,\n    //       ],\n    //     }),\n    //   ],\n    //   artifacts: [],\n    //   prompt: '',\n    //   tools: [],\n    // } as any); // TODO(burdon): Rewrite test.\n\n    // return {\n    //   timeElapsed: performance.now() - startTime,\n    //   message: create(DataType.Message.Message, {\n    //     ...message,\n    //     blocks: message.blocks.map((block) =>\n    //       block._tag !== 'transcript'\n    //         ? block\n    //         : {\n    //             ...block,\n    //             text: insertReferences(block.text, result),\n    //           },\n    //     ),\n    //   }),\n    // };\n  },\n});\n", "//\n// Copyright 2025 DXOS.org\n//\n\nimport { defineFunction } from '@dxos/functions';\n\nimport { ExtractionInput, ExtractionOutput } from '../extraction';\n\n/**\n * Named Entity Recognition model\n */\n// TODO(mykola): Make it use vector index to query objects and not pass objects as input.\nexport const extractionNerFunction = defineFunction({\n  key: 'dxos.org/function/extraction/extract-entities',\n  name: 'Extract Entities',\n  description: 'Extracts named entities from a text',\n  inputSchema: ExtractionInput,\n  outputSchema: ExtractionOutput,\n  handler: async ({ data: { message, options }, context }) => {\n    throw new Error('not implemented');\n    // log.info('input', { message, options });\n    // const startTime = performance.now();\n    // const { db } = context.getService(DatabaseService);\n    // const { extractFullEntities } = await import('./named-entity-recognition');\n\n    // const entitiesPromise = Promise.all(\n    //   message.blocks.map(async (block) => {\n    //     invariant(block._tag === 'transcript' || block._tag === 'text');\n    //     return extractFullEntities(block.text);\n    //   }),\n    // ).then((entities) => entities.flat());\n    // const entities = options?.timeout ? await asyncTimeout(entitiesPromise, options.timeout) : await entitiesPromise;\n\n    // log.info('entities', { entities });\n    // const quoteReferences = await findQuotes(\n    //   entities.map((entity) => entity.word),\n    //   db,\n    // );\n\n    // const blocksWithReferences = message.blocks.map((block) => {\n    //   invariant(block._tag === 'transcript' || block._tag === 'text');\n    //   return { ...block, text: insertReferences(block._tag, quoteReferences) };\n    // });\n\n    // const messageWithReferences = create(Message.Message, {\n    //   ...message,\n    //   blocks: blocksWithReferences,\n    // });\n\n    // log.info('output', { messageWithReferences });\n    // return {\n    //   message: messageWithReferences,\n    //   timeElapsed: performance.now() - startTime,\n    // };\n  },\n});\n", "//\n// Copyright 2025 DXOS.org\n//\n\nimport {\n  type TokenClassificationOutput,\n  type TokenClassificationPipelineType,\n  type TokenClassificationSingle,\n  pipeline,\n} from '@xenova/transformers';\n\nimport { log } from '@dxos/log';\n\nlet _ner: Promise<TokenClassificationPipelineType>;\n\n/**\n * Named Entity Recognition pipeline.\n * Initializes the pipeline on first call.\n * @returns The singleton promise that resolves to a token classification pipeline.\n */\nexport const getNer = () => {\n  if (!_ner) {\n    _ner = pipeline('ner', 'Xenova/bert-base-NER').then((ner) => {\n      log.info('NER model is ready');\n      return ner;\n    });\n  }\n\n  return _ner;\n};\n\n/**\n * Extracts entities from text using the named entity recognition pipeline and does simple grouping of tokens.\n */\nexport const extractFullEntities = async (text: string): Promise<TokenClassificationSingle[]> => {\n  const ner = await getNer();\n  const entities = (await ner(text)) as TokenClassificationOutput;\n  const tokenGroups = createTokenGroups(entities);\n  const combinedEntities = tokenGroups.map(combineNerTokens);\n  return combinedEntities;\n};\n\nexport const createTokenGroups = (tokens: TokenClassificationSingle[]): TokenClassificationSingle[][] => {\n  const tokenGroups: TokenClassificationSingle[][] = [];\n\n  const canBeCombined = (prevToken: TokenClassificationSingle, currentToken: TokenClassificationSingle) => {\n    const [currentState, currentEntity] = currentToken.entity.split('-'); // B, I, O\n    const [prevState, prevEntity] = prevToken.entity.split('-'); // B, I, O\n    if (prevEntity !== currentEntity) {\n      return false;\n    }\n    if (prevState === 'O') {\n      return false;\n    }\n    if (currentState === 'I') {\n      return true;\n    }\n    if ((prevState === 'B' || prevState === 'I') && currentState === 'B') {\n      return currentToken.word.startsWith('#');\n    }\n    return false;\n  };\n\n  for (const token of tokens) {\n    if (tokenGroups.length === 0) {\n      tokenGroups.push([token]);\n      continue;\n    }\n    const lastTokenGroup = tokenGroups.at(-1)!;\n    if (canBeCombined(lastTokenGroup.at(-1)!, token)) {\n      lastTokenGroup.push(token);\n      continue;\n    }\n    tokenGroups.push([token]);\n  }\n\n  return tokenGroups;\n};\n\nexport const combineNerTokens = (group: TokenClassificationSingle[]): TokenClassificationSingle => {\n  const combinedToken: TokenClassificationSingle = {\n    entity: group.at(0)!.entity.split('-')[1],\n    score: group.reduce((acc, token) => acc + token.score, 0) / group.length,\n    index: group.at(0)!.index,\n    word: group.at(0)!.word,\n    start: group.at(0)!.start,\n    end: group.at(-1)!.end,\n  };\n\n  for (const token of group.slice(1)) {\n    if (token.word.startsWith('#')) {\n      combinedToken.word += token.word.replace(/^#+/, '');\n    } else {\n      combinedToken.word += ' ' + token.word;\n    }\n  }\n\n  return combinedToken;\n};\n", "//\n// Copyright 2025 DXOS.org\n//\n\nimport * as Schema from 'effect/Schema';\n\nimport { Filter, Query } from '@dxos/echo';\nimport { ObjectId } from '@dxos/echo/internal';\nimport { type EchoDatabase } from '@dxos/echo-db';\nimport { DXN } from '@dxos/keys';\nimport { log } from '@dxos/log';\n\nexport const ReferencedQuotes = Schema.Struct({\n  references: Schema.Array(\n    Schema.Struct({\n      id: Schema.String,\n      quote: Schema.String, // TODO(burdon): Quote?\n    }),\n  )\n    .pipe(Schema.mutable)\n    .annotations({\n      // TODO(burdon): Does this description make sense?\n      description: `\n      The references to the context objects that are mentioned in the transcript. \n      Quote should match the original transcript text exactly, while id is the id of the context object.\n    `,\n    }),\n});\nexport type ReferencedQuotes = Schema.Schema.Type<typeof ReferencedQuotes>;\n\nexport const findQuotes = async (quotes: string[], db: EchoDatabase): Promise<ReferencedQuotes> => {\n  const references = await Promise.all(\n    quotes.map(async (quote) => {\n      const { objects } = await db.query(Query.select(Filter.text(quote, { type: 'vector' }))).run();\n      log.info('found quotes in vector index', { objects, quote });\n      return objects.length > 0 ? [{ id: objects[0].id.toString(), quote }] : [];\n    }),\n  );\n  return { references: references.flat() };\n};\n\n/**\n * Finds and replaces all quotes with DXNs references.\n */\n// TODO(dmaretskyi): Lookup and verifiy ids from provided context.\nexport const insertReferences = (text: string, quotes: ReferencedQuotes) => {\n  for (const quote of quotes.references) {\n    if (!ObjectId.isValid(quote.id)) {\n      continue;\n    }\n\n    // Use a case-insensitive regular expression to replace the quote.\n    const regex = new RegExp(quote.quote.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&'), 'gi');\n    text = text.replace(regex, `[${quote.quote}](${DXN.fromLocalObjectId(quote.id).toString()})`);\n  }\n\n  return text;\n};\n"],
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 }