@dxos/assistant-toolkit 0.8.4-main.e8ec1fe → 0.8.4-main.fcfe5033a5

package/src/functions/research/research.test.ts

@@ -1,179 +0,0 @@
-//
-// Copyright 2025 DXOS.org
-//
-
-import { inspect } from 'node:util';
-
-import { describe, it } from '@effect/vitest';
-import * as Effect from 'effect/Effect';
-import * as Layer from 'effect/Layer';
-
-import { AiService, ConsolePrinter, MemoizedAiService } from '@dxos/ai';
-import { TestAiService } from '@dxos/ai/testing';
-import {
-  AiConversation,
-  type ContextBinding,
-  GenerationObserver,
-  makeToolExecutionServiceFromFunctions,
-  makeToolResolverFromFunctions,
-} from '@dxos/assistant';
-import { Blueprint } from '@dxos/blueprints';
-import { Filter, Obj, Query, Ref } from '@dxos/echo';
-import { TestHelpers, acquireReleaseResource } from '@dxos/effect';
-import {
-  CredentialsService,
-  DatabaseService,
-  FunctionInvocationService,
-  QueueService,
-  TracingService,
-} from '@dxos/functions';
-import { FunctionInvocationServiceLayerTest, TestDatabaseLayer } from '@dxos/functions-runtime/testing';
-import { invariant } from '@dxos/invariant';
-import { ObjectId } from '@dxos/keys';
-import { MarkdownBlueprint, MarkdownFunction } from '@dxos/plugin-markdown/toolkit';
-import { Markdown } from '@dxos/plugin-markdown/types';
-import { HasSubject, type Message, Organization } from '@dxos/types';
-
-import { ResearchBlueprint } from '../../blueprints';
-import { testToolkit } from '../../blueprints/testing';
-
-import { default as createDocument } from './document-create';
-import { default as research } from './research';
-import { ResearchGraph, queryResearchGraph } from './research-graph';
-import { ResearchDataTypes } from './types';
-
-ObjectId.dangerouslyDisableRandomness();
-
-const TestLayer = Layer.mergeAll(
-  AiService.model('@anthropic/claude-opus-4-0'),
-  makeToolResolverFromFunctions(
-    [research, createDocument, MarkdownFunction.create, MarkdownFunction.open, MarkdownFunction.update],
-    testToolkit,
-  ),
-  makeToolExecutionServiceFromFunctions(testToolkit, testToolkit.toLayer({}) as any),
-).pipe(
-  Layer.provideMerge(
-    FunctionInvocationServiceLayerTest({
-      functions: [research, createDocument, MarkdownFunction.create, MarkdownFunction.open, MarkdownFunction.update],
-    }),
-  ),
-  Layer.provideMerge(
-    Layer.mergeAll(
-      TestAiService(),
-      TestDatabaseLayer({
-        spaceKey: 'fixed',
-        indexing: { vector: true },
-        types: [...ResearchDataTypes, ResearchGraph, Blueprint.Blueprint, Markdown.Document, HasSubject.HasSubject],
-      }),
-      CredentialsService.configuredLayer([]),
-      TracingService.layerNoop,
-    ),
-  ),
-);
-
-describe('Research', () => {
-  it.effect(
-    'call a function to generate a research report',
-    Effect.fnUntraced(
-      function* (_) {
-        yield* DatabaseService.add(
-          Obj.make(Organization.Organization, {
-            name: 'BlueYard',
-            website: 'https://blueyard.com',
-          }),
-        );
-        yield* DatabaseService.flush({ indexes: true });
-        const result = yield* FunctionInvocationService.invokeFunction(research, {
-          query: 'Founders and portfolio of BlueYard.',
-        });
-
-        console.log(inspect(result, { depth: null, colors: true }));
-        console.log(JSON.stringify(result, null, 2));
-
-        yield* DatabaseService.flush({ indexes: true });
-        const researchGraph = yield* queryResearchGraph();
-        if (researchGraph) {
-          const data = yield* DatabaseService.load(researchGraph.queue).pipe(
-            Effect.flatMap((queue) => Effect.promise(() => queue.queryObjects())),
-          );
-          console.log(inspect(data, { depth: null, colors: true }));
-        }
-      },
-      Effect.provide(TestLayer),
-      TestHelpers.provideTestContext,
-    ),
-    MemoizedAiService.isGenerationEnabled() ? 240_000 : 30_000,
-  );
-
-  it.scoped(
-    'create and update research report',
-    Effect.fnUntraced(
-      function* (_) {
-        const organization = yield* DatabaseService.add(
-          Obj.make(Organization.Organization, {
-            name: 'BlueYard',
-            website: 'https://blueyard.com',
-          }),
-        );
-
-        const queue = yield* QueueService.createQueue<Message.Message | ContextBinding>();
-        const conversation = yield* acquireReleaseResource(() => new AiConversation(queue));
-
-        yield* DatabaseService.flush({ indexes: true });
-        const researchBlueprint = yield* DatabaseService.add(Obj.clone(ResearchBlueprint));
-        const markdownBlueprint = yield* DatabaseService.add(Obj.clone(MarkdownBlueprint));
-        yield* Effect.promise(() =>
-          conversation.context.bind({
-            blueprints: [Ref.make(researchBlueprint), Ref.make(markdownBlueprint)],
-            objects: [Ref.make(organization)],
-          }),
-        );
-
-        const observer = GenerationObserver.fromPrinter(new ConsolePrinter());
-
-        yield* conversation.createRequest({
-          observer,
-          prompt: `Create a research summary about ${organization.name}.`,
-        });
-        {
-          const { objects: docs } = yield* DatabaseService.runQuery(
-            Query.select(Filter.ids(organization.id)).targetOf(HasSubject.HasSubject).source(),
-          );
-          if (docs.length !== 1) {
-            throw new Error(`Expected 1 research document; got ${docs.length}: ${docs.map((_) => _.name)}`);
-          }
-
-          const doc = docs[0];
-          invariant(Obj.instanceOf(Markdown.Document, doc));
-          console.log({
-            name: doc.name,
-            content: yield* DatabaseService.load(doc.content).pipe(Effect.map((_) => _.content)),
-          });
-        }
-
-        yield* conversation.createRequest({
-          observer,
-          prompt: 'Add a section about their portfolio.',
-        });
-        {
-          const { objects: docs } = yield* DatabaseService.runQuery(
-            Query.select(Filter.ids(organization.id)).targetOf(HasSubject.HasSubject).source(),
-          );
-          if (docs.length !== 1) {
-            throw new Error(`Expected 1 research document; got ${docs.length}: ${docs.map((_) => _.name)}`);
-          }
-
-          const doc = docs[0];
-          invariant(Obj.instanceOf(Markdown.Document, doc));
-          console.log({
-            name: doc.name,
-            content: yield* DatabaseService.load(doc.content).pipe(Effect.map((_) => _.content)),
-          });
-        }
-      },
-      Effect.provide(TestLayer),
-      TestHelpers.provideTestContext,
-    ),
-    MemoizedAiService.isGenerationEnabled() ? 240_000 : 30_000,
-  );
-});

package/src/functions/research/research.ts

@@ -1,190 +0,0 @@
-//
-// Copyright 2025 DXOS.org
-//
-
-import * as Toolkit from '@effect/ai/Toolkit';
-import * as AnthropicTool from '@effect/ai-anthropic/AnthropicTool';
-import * as Array from 'effect/Array';
-import * as Effect from 'effect/Effect';
-import * as Function from 'effect/Function';
-import * as Layer from 'effect/Layer';
-import * as Option from 'effect/Option';
-import * as Schema from 'effect/Schema';
-import * as String from 'effect/String';
-
-import { AiService, ConsolePrinter } from '@dxos/ai';
-import {
-  AiSession,
-  GenerationObserver,
-  createToolkit,
-  makeToolExecutionServiceFromFunctions,
-  makeToolResolverFromFunctions,
-} from '@dxos/assistant';
-import { Template } from '@dxos/blueprints';
-import { type DXN, Obj } from '@dxos/echo';
-import { DatabaseService, TracingService, defineFunction } from '@dxos/functions';
-import { FunctionInvocationServiceLayerTestMocked } from '@dxos/functions-runtime/testing';
-import { type Message, Person } from '@dxos/types';
-import { trim } from '@dxos/util';
-
-import { LocalSearchHandler, LocalSearchToolkit, makeGraphWriterHandler, makeGraphWriterToolkit } from '../../crud';
-import { exaFunction, exaMockFunction } from '../exa';
-
-import { contextQueueLayerFromResearchGraph } from './research-graph';
-import PROMPT from './research-instructions.tpl?raw';
-import { ResearchDataTypes } from './types';
-
-/**
- * Exec external service and return the results as a Subgraph.
- */
-export default defineFunction({
-  key: 'dxos.org/function/research',
-  name: 'Research',
-  description: trim`
-    Search the web to research information about the given subject.
-    Inserts structured data into the research graph. 
-    Creates a research summary and returns the objects created.
-  `,
-  inputSchema: Schema.Struct({
-    query: Schema.String.annotations({
-      description: trim`
-        The search query.
-        If doing research on an object then load it first and pass it as JSON.
-      `,
-    }),
-
-    instructions: Schema.optional(Schema.String).annotations({
-      description: trim`
-        The instructions for the research agent. 
-      `,
-    }),
-
-    // TOOD(burdon): Move to context.
-    mockSearch: Schema.optional(Schema.Boolean).annotations({
-      description: 'Whether to use the mock search tool.',
-      default: false,
-    }),
-
-    entityExtraction: Schema.optional(Schema.Boolean).annotations({
-      description: trim`
-        Whether to extract structured entities from the research. 
-        Experimental feature only enable if user explicitly requests it.
-      `,
-      default: false,
-    }),
-  }),
-  outputSchema: Schema.Struct({
-    document: Schema.optional(Schema.String).annotations({
-      description: 'The generated research document.',
-    }),
-    objects: Schema.Array(Schema.Unknown).annotations({
-      description: 'Structured objects created during the research process.',
-    }),
-  }),
-  handler: Effect.fnUntraced(
-    function* ({ data: { query, instructions, mockSearch = false, entityExtraction = false } }) {
-      if (mockSearch) {
-        const mockPerson = yield* DatabaseService.add(
-          Obj.make(Person.Person, {
-            preferredName: 'John Doe',
-            emails: [{ value: 'john.doe@example.com' }],
-            phoneNumbers: [{ value: '123-456-7890' }],
-          }),
-        );
-
-        return {
-          document: trim`
-            The research ran in test-mode and was mocked. Proceed as usual.
-            We reference John Doe to test reference: ${Obj.getDXN(mockPerson)}
-          `,
-          objects: [Obj.toJSON(mockPerson)],
-        };
-      }
-
-      yield* DatabaseService.flush({ indexes: true });
-      yield* TracingService.emitStatus({ message: 'Starting research...' });
-
-      const NativeWebSearch = Toolkit.make(AnthropicTool.WebSearch_20250305({}));
-
-      let toolkit: Toolkit.Any = NativeWebSearch;
-      let handlers: Layer.Layer<any, any> = Layer.empty as any;
-
-      const objectDXNs: DXN[] = [];
-      if (entityExtraction) {
-        const GraphWriterToolkit = makeGraphWriterToolkit({ schema: ResearchDataTypes });
-        const GraphWriterHandler = makeGraphWriterHandler(GraphWriterToolkit, {
-          onAppend: (dxns) => objectDXNs.push(...dxns),
-        });
-
-        toolkit = Toolkit.merge(toolkit, LocalSearchToolkit, GraphWriterToolkit);
-        handlers = Layer.mergeAll(handlers, LocalSearchHandler, GraphWriterHandler).pipe(
-          Layer.provide(contextQueueLayerFromResearchGraph),
-        ) as any;
-      }
-
-      const finishedToolkit = yield* createToolkit({
-        toolkit: toolkit as any,
-      }).pipe(Effect.provide(handlers));
-
-      const session = new AiSession();
-      const result = yield* session.run({
-        prompt: query,
-        system: join(
-          Template.process(PROMPT, { entityExtraction }),
-          instructions && `<instructions>${instructions}</instructions>`,
-        ),
-        toolkit: finishedToolkit,
-        observer: GenerationObserver.fromPrinter(new ConsolePrinter({ tag: 'research' })),
-      });
-
-      const objects = yield* Effect.forEach(objectDXNs, (dxn) => DatabaseService.resolve(dxn)).pipe(
-        Effect.map(Array.map((obj) => Obj.toJSON(obj))),
-      );
-
-      return {
-        document: extractLastTextBlock(result),
-        objects,
-      };
-    },
-    Effect.provide(
-      Layer.mergeAll(
-        AiService.model('@anthropic/claude-sonnet-4-0'),
-        // TODO(dmaretskyi): Extract.
-        makeToolResolverFromFunctions([exaFunction, exaMockFunction], Toolkit.make()),
-        makeToolExecutionServiceFromFunctions(Toolkit.make() as any, Layer.empty as any),
-      ).pipe(
-        Layer.provide(
-          // TODO(dmaretskyi): This should be provided by environment.
-          Layer.mergeAll(FunctionInvocationServiceLayerTestMocked({ functions: [exaFunction, exaMockFunction] })),
-        ),
-      ),
-    ),
-  ),
-});
-
-// TODO(burdon): Factor out.
-const join = (...strings: (string | undefined)[]) => strings.filter(Boolean).join('\n\n');
-
-/**
- * Extracts the last text block from the result.
- * Skips citations.
- */
-// TODO(burdon): Factor out.
-const extractLastTextBlock = (result: Message.Message[]) => {
-  return Function.pipe(
-    result,
-    Array.last,
-    Option.map(
-      Function.flow(
-        (_: Message.Message) => _.blocks,
-        Array.reverse,
-        Array.dropWhile((_: any) => _._tag === 'summary'),
-        Array.takeWhile((_: any) => _._tag === 'text'),
-        Array.reverse,
-        Array.map((_: any) => _.text),
-        Array.reduce('', String.concat),
-      ),
-    ),
-    Option.getOrElse(() => ''),
-  );
-};

package/src/functions/tasks/index.ts

@@ -1,11 +0,0 @@
-//
-// Copyright 2025 DXOS.org
-//
-
-import { default as read$ } from './read';
-import { default as update$ } from './update';
-
-export namespace Tasks {
-  export const read = read$;
-  export const update = update$;
-}

package/src/functions/tasks/read.ts

@@ -1,34 +0,0 @@
-//
-// Copyright 2025 DXOS.org
-//
-
-import * as Effect from 'effect/Effect';
-import * as Schema from 'effect/Schema';
-
-import { ArtifactId } from '@dxos/assistant';
-import { DatabaseService, defineFunction } from '@dxos/functions';
-import { Markdown } from '@dxos/plugin-markdown/types';
-
-export default defineFunction({
-  key: 'dxos.org/function/markdown/read-tasks',
-  name: 'Read',
-  description: 'Read markdown tasks.',
-  inputSchema: Schema.Struct({
-    id: ArtifactId.annotations({
-      description: 'The ID of the document to read.',
-    }),
-  }),
-  outputSchema: Schema.Struct({
-    content: Schema.String,
-  }),
-  handler: Effect.fn(function* ({ data: { id } }) {
-    const doc = yield* DatabaseService.resolve(ArtifactId.toDXN(id), Markdown.Document);
-
-    // Return content with line numbers prefixed.
-    const { content } = yield* DatabaseService.load(doc.content);
-    const lines = content.split('\n');
-    const len = String(lines.length).length;
-    const numbered = lines.map((line, i) => `${String(i + 1).padStart(len, ' ')}. ${line}`).join('\n');
-    return { content: numbered };
-  }),
-});

package/src/functions/tasks/update.ts

@@ -1,52 +0,0 @@
-//
-// Copyright 2025 DXOS.org
-//
-
-import * as Effect from 'effect/Effect';
-import * as Schema from 'effect/Schema';
-
-import { ArtifactId } from '@dxos/assistant';
-import { DatabaseService, defineFunction } from '@dxos/functions';
-import { Markdown } from '@dxos/plugin-markdown/types';
-
-import { MarkdownTasks, type TaskOperation } from './task-list';
-
-export default defineFunction({
-  key: 'dxos.org/function/markdown/update-tasks',
-  name: 'Update markdown',
-  description: 'Creates and updates tasks in markdown documents.',
-  inputSchema: Schema.Struct({
-    id: ArtifactId.annotations({
-      description: 'The ID of the document to update.',
-    }),
-    operations: Schema.optional(
-      Schema.Array(
-        Schema.Any.annotations({
-          description: 'Task operations to apply.',
-        }),
-      ),
-    ),
-  }),
-  outputSchema: Schema.Struct({
-    content: Schema.String,
-    numberedContent: Schema.String.annotations({
-      description: 'Content with line numbers for agent reference.',
-    }),
-  }),
-  handler: Effect.fn(function* ({ data: { id, operations = [] } }) {
-    const doc = yield* DatabaseService.resolve(ArtifactId.toDXN(id), Markdown.Document);
-
-    // Create task manager and apply operations if provided.
-    const { content } = yield* DatabaseService.load(doc.content);
-    const taskManager = new MarkdownTasks(content);
-    if (operations.length > 0) {
-      taskManager.applyOperations(operations as TaskOperation[]);
-      // TODO: Update the document content when database operations are fixed.
-    }
-
-    return {
-      content: taskManager.getRawContent(),
-      numberedContent: taskManager.getNumberedContent(),
-    };
-  }),
-});

package/src/plugins.tsx

@@ -1,68 +0,0 @@
-//
-// Copyright 2025 DXOS.org
-//
-
-import * as Schema from 'effect/Schema';
-import React from 'react';
-
-import { type AnyCapability, Capabilities, contributes, createSurface } from '@dxos/app-framework';
-import { type Obj, Type } from '@dxos/echo';
-import { JsonFilter } from '@dxos/react-ui-syntax-highlighter';
-
-export const MapSchema = Schema.Struct({
-  coordinates: Type.Format.GeoPoint,
-}).pipe(
-  Type.Obj({
-    typename: 'example.com/type/Map',
-    version: '0.1.0',
-  }),
-);
-
-export type MapSchema = Schema.Schema.Type<typeof MapSchema>;
-
-// TODO(burdon): Move to ECHO def.
-export type ArtifactsContext = {
-  items: Obj.Any[];
-  getArtifacts: () => Obj.Any[];
-  addArtifact: (artifact: Obj.Any) => void;
-};
-
-declare global {
-  interface ToolContextExtensions {
-    artifacts?: ArtifactsContext;
-  }
-}
-
-// TODO(dmaretskyi): Removed images from conductor GPT implementation.
-const isImage = (data: any): data is any => false;
-
-export const capabilities: AnyCapability[] = [
-  contributes(
-    Capabilities.ReactSurface,
-    createSurface({
-      id: 'plugin-image',
-      role: 'card--extrinsic',
-      filter: (data: any): data is any => isImage(data.value),
-      component: ({ data }) => (
-        <img
-          className='grow object-cover'
-          src={`data:image/jpeg;base64,${data.value.source.data}`}
-          alt={data.value.prompt ?? `Generated image [id=${data.value.id}]`}
-        />
-      ),
-    }),
-  ),
-
-  //
-  // Default
-  //
-  contributes(
-    Capabilities.ReactSurface,
-    createSurface({
-      id: 'plugin-default',
-      role: 'card--extrinsic',
-      position: 'fallback',
-      component: ({ role, data }) => <JsonFilter data={data} />,
-    }),
-  ),
-];

package/src/toolkits/AssistantToolkit.conversations.json

@@ -1 +0,0 @@
-{"conversations":[{"parameters":{"model":"@anthropic/claude-opus-4-0","stream":true,"tools":[]},"prompt":{"content":[{"role":"user","content":"Add to context: {\"id\":\"01JGFJJZ00G0WKQSJGMAKCNT87\",\"@type\":\"dxn:type:dxos.org/type/Organization:0.1.0\",\"@meta\":{\"keys\":[]},\"name\":\"Cyberdyne Systems\",\"website\":\"https://cyberdyne.com\"}","options":{}}]},"response":[{"type":"response-metadata","id":"msg_01HNLR7j62QCthmzukeZc38d","modelId":"claude-opus-4-20250514","timestamp":"1970-01-01T00:00:00.000Z","metadata":{}},{"type":"text-start","id":"0","metadata":{}},{"type":"text-delta","id":"0","delta":"I've","metadata":{}},{"type":"text-delta","id":"0","delta":" note","metadata":{}},{"type":"text-delta","id":"0","delta":"d the","metadata":{}},{"type":"text-delta","id":"0","delta":" context","metadata":{}},{"type":"text-delta","id":"0","delta":" about","metadata":{}},{"type":"text-delta","id":"0","delta":" Cyberdyne Systems. 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