@dsh-bio/dsh-bio-gem 0.1.1 → 0.1.2
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- package/README.md +9 -4
- package/package.json +1 -1
package/README.md
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@@ -6,7 +6,7 @@ Genome-scale metabolic model builder for dsh: genome in, validated SBML out.
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## 📦 安装
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本插件已发布为 npm 包 **`@dsh-bio/dsh-bio-gem`**（纯 ESM，无构建步骤），也可直接从 GitHub 源或本地目录安装。
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### 0. 环境要求
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### 1. 安装插件
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```sh
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# 方式一：从 npm 安装（推荐，已发布预置包）
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npx -y @deepseek-ai/dsh plugin --profile web add @dsh-bio/dsh-bio-gem
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# 方式二：从 GitHub 安装（拉源码；本插件纯 ESM 无构建步骤，可直接加载）
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npx -y @deepseek-ai/dsh plugin --profile web add github:moonbowterfly/dsh-bio-gem
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# 方式三：从本地目录安装（开发调试）
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npx -y @deepseek-ai/dsh plugin --profile web add ./dsh-bio-gem
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```
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- 本机若已全局安装 dsh CLI，把 `npx -y @deepseek-ai/dsh` 换成 `dsh` 即可。
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- `--profile <name>` 是**必填选项**（不传报 `required option '--profile <name>' not specified`）；Web 端固定用 `web`。
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- 安装完**重启 dsh web 服务**（关掉原窗口，重新双击启动入口）。
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- 版本刚发布时可能短时间拉不到：registry 首次分发有几分钟延迟，`pnpm` 还可能缓存住 404。遇到 `ERR_PNPM_FETCH_404 ... is not in the npm registry` 时等几分钟重试，或在命令末尾追加 `--registry https://registry.npmjs.org/` 绕过缓存。
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验证插件层已生效（不用启动服务）：
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@@ -122,7 +126,8 @@ npx -y @deepseek-ai/dsh plugin --profile web remove dsh-bio-gem
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```sh
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# 1) install the plugin into the web profile, then restart dsh
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npx -y @deepseek-ai/dsh plugin --profile web add
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npx -y @deepseek-ai/dsh plugin --profile web add @dsh-bio/dsh-bio-gem
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# (or from source: github:moonbowterfly/dsh-bio-gem)
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# 2) analysis Python needs cobra (+ pyrodigal for the annotation fallback)
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uv venv --python 3.11 "$HOME/.dsh/dsh-bio-gem/venv"
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package/package.json
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{
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"name": "@dsh-bio/dsh-bio-gem",
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"version": "0.1.
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"version": "0.1.2",
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"description": "基因组尺度代谢模型（GEM）构建插件：输入细菌全基因组（蛋白FASTA，支持多质粒/多染色体），自动构建+验证+补洞+出报告（SBML + 模型卡），供 dsh-bio-genie 消费工具加载使用 | Genome-scale metabolic model builder for dsh",
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"repository": {
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"type": "git",
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