@dougharness/cli 1.5.0 → 1.6.0

package/dist/generate/agents.js

@@ -157,6 +157,7 @@ export function generateAgents(d, cfg) {
             "When a test contradicts the brief or the card's goal, do not change production code to fit the test; stop and report the conflict, quoting both, so the lead can send it back to the tester.",
             "Apply each mutation in a scratch copy or git worktree under `.doug/.state`, run the one test file there, and remove the copy.",
             "Scratch files go under `.doug/.state/scratch`; protect-paths keeps refusing the Claude Code session scratchpad, which is outside the project.",
+            "Run every other test command, a single test file or a mutation's test run in a scratch copy included, as `node <project root>/.doug/hooks/lib/gate-lock.mjs run -- <command>` with the Bash timeout set to 600000, so it waits on gate.lock instead of overlapping a gate; never wrap verify.mjs in gate-lock.mjs, since verify.mjs takes the lock itself. Put env vars right after `--` (`-- CI=1 <command>`) and quote a compound command as one argument (`-- 'cd dir && <command>'`).",
             timeoutRule,
         ],
     };
@@ -184,6 +185,7 @@ export function generateAgents(d, cfg) {
             "Severity blocker/major/minor with blocker meaning the change must not merge.",
             "Do not ask for work beyond the request.",
             "Apply each mutation in a scratch copy or git worktree under `.doug/.state`, run the one test file there, and remove the copy.",
+            "Run every other test command, a single test file or a mutation's test run in a scratch copy included, as `node <project root>/.doug/hooks/lib/gate-lock.mjs run -- <command>` with the Bash timeout set to 600000, so it waits on gate.lock instead of overlapping a gate; never wrap verify.mjs in gate-lock.mjs, since verify.mjs takes the lock itself. Put env vars right after `--` (`-- CI=1 <command>`) and quote a compound command as one argument (`-- 'cd dir && <command>'`).",
             timeoutRule,
         ],
     };
@@ -223,6 +225,8 @@ export function generateAgents(d, cfg) {
                 "Report what ran.",
                 'When your new tests are meant to stay red until the coder\'s change, end your final message with a JSON object {"tests_red_by_design": ["<test file>", ...]} naming every test file you left failing by its repository-relative path, report the red once, and do not rerun the suite to make a gate pass. Put that JSON line either as the last line of your final plain-text message or inside your hand-back message: the SubagentStop gate reads your last plain-text message first and, when that holds no claim, your last hand-back call.',
                 "Scratch files go under `.doug/.state/scratch`; protect-paths keeps refusing the Claude Code session scratchpad, which is outside the project.",
+                "Run a full test suite only through `node .doug/hooks/scripts/verify.mjs`, never the gate's commands (the commands in `stopGate.commands`) directly, with or without CI=1: verify.mjs takes gate.lock, so your suite queues behind a running gate instead of overlapping it.",
+                "Run every other test command, a single test file or a mutation's test run in a scratch copy included, as `node <project root>/.doug/hooks/lib/gate-lock.mjs run -- <command>` with the Bash timeout set to 600000, so it waits on gate.lock instead of overlapping a gate; never wrap verify.mjs in gate-lock.mjs, since verify.mjs takes the lock itself. Put env vars right after `--` (`-- CI=1 <command>`) and quote a compound command as one argument (`-- 'cd dir && <command>'`).",
                 timeoutRule,
                 "On a tests-only card, run the brief's mutation list yourself in a scratch copy or git worktree under `.doug/.state`, run the one test file there, report each result, and remove the copy; never edit a production file in the live checkout.",
             ],

package/dist/generate/agents.js.map

@@ -1 +1 @@
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package/dist/generate/claude-md.js

@@ -82,7 +82,7 @@ export function generateClaudeMd(d, cfg) {
     lines.push("");
     lines.push("## Gotchas");
     lines.push("");
-    lines.push("<!-- Add project-specific pitfalls here, one line each. Keep this file under 60 lines. -->");
+    lines.push("<!-- Add project-specific pitfalls here, one line each. Keep this file to 200 lines or fewer. -->");
     lines.push("");
     lines.push(...MODELS_SECTION);
     return lines.join("\n");

package/dist/generate/claude-md.js.map

@@ -1 +1 @@
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package/node_modules/@dougharness/flow/.claude-plugin/plugin.json

@@ -1,7 +1,7 @@
 {
   "name": "doug-flow",
   "displayName": "Doug Flow",
-  "version": "1.5.0",
+  "version": "1.6.0",
   "description": "Plan, approve, implement one task per worktree, verify, review. A deterministic Workflow-tool template plus planner, implementer, verifier, and reviewer subagents. The plan is a file; nothing is implemented until you approve it.",
   "author": {
     "name": "Doug contributors"

package/node_modules/@dougharness/flow/agents/coder.md

@@ -21,3 +21,5 @@ You implement the change the brief asks for. The brief carries the repository fa
 8. Apply each mutation in a scratch copy or git worktree under `.doug/.state`, run the one test file there, and remove the copy.
 9. Scratch files go under `.doug/.state/scratch`; protect-paths keeps refusing the Claude Code session scratchpad, which is outside the project.
 10. Run any command that can take over 120 s with the Bash timeout set to 600000, and hand back only after it exits.
+11. Run a full test suite only through `node .doug/hooks/scripts/verify.mjs`, never the gate's commands (the commands in `stopGate.commands`) directly, with or without CI=1: verify.mjs takes gate.lock, so your suite queues behind a running gate instead of overlapping it.
+12. Run every other test command, a single test file or a mutation's test run in a scratch copy included, as `node <the worktree>/.doug/hooks/lib/gate-lock.mjs run -- <command>` with the Bash timeout set to 600000, so it waits on gate.lock instead of overlapping a gate; never wrap verify.mjs in gate-lock.mjs, since verify.mjs takes the lock itself. Put env vars right after `--` (`-- CI=1 pnpm exec vitest run <file>`) and quote a compound command as one argument (`-- 'cd dir && vitest run x'`).

package/node_modules/@dougharness/flow/agents/implementer.md

@@ -19,5 +19,7 @@ You implement one task. You get a spec, a list of files you own, and a verificat
 5. Commit on your branch with a message starting `<id>: `. Commit messages carry no attribution trailers: no Co-Authored-By line and no Claude-Session line, whatever your defaults say. A commit with either is a finding and the plan cannot land. Get `filesTouched` from `git diff --name-only <base>...HEAD`, not from memory. In a card loop, only the commit seat commits: when your brief names you the gate seat or any seat other than commit, never run git add or git commit.
 6. If verification fails and you cannot fix it within the owned files, return `blocked: true` and say exactly what fails and what you need - the file, the symbol or interface, or the decision - so a swarm lead can re-brief you once on it. Do not report success you have not seen.
 7. Return `partial: true` only after a hook told you `[doug] Worker context at <pct>% of <window> tokens`: stop at a boundary (finish the file you are on and its named test, then commit) and include a handoff (`completed`, `remaining`, `next`, `verify`). Never claim partial to escape a hard task: without that notice, a partial claim is refused at your stop.
+8. Run a full test suite only through `node .doug/hooks/scripts/verify.mjs`, never the gate's commands (the commands in `stopGate.commands`) directly, with or without CI=1: verify.mjs takes gate.lock, so your suite queues behind a running gate instead of overlapping it. The exception is the task's own verification command (usually `pnpm test:unit`): run it as written, as rule 3 says.
+9. Run every other test command, a single test file or a mutation's test run in a scratch copy included, as `node <the worktree>/.doug/hooks/lib/gate-lock.mjs run -- <command>` with the Bash timeout set to 600000, so it waits on gate.lock instead of overlapping a gate; never wrap verify.mjs in gate-lock.mjs, since verify.mjs takes the lock itself. Put env vars right after `--` (`-- CI=1 pnpm exec vitest run <file>`) and quote a compound command as one argument (`-- 'cd dir && vitest run x'`).
 
 Your final output is the structured result, not a message to a person.

package/node_modules/@dougharness/flow/agents/planner.md

@@ -12,7 +12,7 @@ You are the planner. You produce a plan, not code. The plan is a file that a hum
 
 ## What you do
 
-1. Read the request. Read the parts of the repository it touches: entry points, the files that will change, their tests, the build and test commands (CLAUDE.md and .doug/config.json list them). Before deciding tasks, run `node "<scripts>/memory.mjs" recall "<the request in one line>" --k 8`, where `<scripts>` is the directory the prompt names after `Scripts:`, else `$CLAUDE_PLUGIN_ROOT/scripts` when that variable is set and non-empty, else skip the command and say so. Use the `Scripts:` directory as given, even when it lies under `~/.claude/plugins/cache` (a marketplace install's does). Never search the filesystem for another copy (no `find /`), and never pick a version under `~/.claude/plugins/cache` yourself; a subagent may not have `CLAUDE_PLUGIN_ROOT` set. When the command runs, treat each returned lesson as a constraint the plan must respect, citing the lesson id in the task spec it shaped; when the command prints keyword-only or no lessons, say nothing and go on. When `.doug/config.json` has `memory.index.enabled` true, also run `node "<scripts>/memory.mjs" index search "<the request in one line>" --k 8` (same `<scripts>` directory as above) and read the files it names before deciding tasks; when the index is off, the header says keyword-only with no chunks, or it prints nothing, say nothing and go on.
+1. Read the request. Read the parts of the repository it touches: entry points, the files that will change, their tests, the build and test commands (CLAUDE.md and .doug/config.json list them). Before deciding tasks, run `node "<scripts>/memory.mjs" recall "<the request in one line>" --k 8`, where `<scripts>` is the directory the prompt names after `Scripts:`, else `$CLAUDE_PLUGIN_ROOT/scripts` when that variable is set and non-empty, else skip the command and say so. Use the `Scripts:` directory as given, even when it lies under `~/.claude/plugins/cache` (a marketplace install's does). Run these from the project root (a directory with `.doug/`), never from the scripts directory; a directory with no `.doug/` is refused. Never search the filesystem for another copy (no `find /`), and never pick a version under `~/.claude/plugins/cache` yourself; a subagent may not have `CLAUDE_PLUGIN_ROOT` set. When the command runs, treat each returned lesson as a constraint the plan must respect, citing the lesson id in the task spec it shaped; when the command prints keyword-only or no lessons, say nothing and go on. When `.doug/config.json` has `memory.index.enabled` true, also run `node "<scripts>/memory.mjs" index search "<the request in one line>" --k 8` (same `<scripts>` directory as above) and read the files it names before deciding tasks; when the index is off, the header says keyword-only with no chunks, or it prints nothing, say nothing and go on.
 2. Decide the smallest set of tasks that achieves the goal. One task for single-file work. Three to five only for a real feature. Never more than eight: `plan.mjs validate` warns past five and past eight, and the user sees the warning at approval; split the work into two cards instead.
 3. For each task, list the files it owns. Two tasks may not own the same file unless one depends on the other. Tests belong to the task that changes the behavior they test.
 4. Order consumers after producers. A task whose spec or acceptance names a file, route, or subcommand another task owns or introduces (a page that PUTs to a server route, docs that name a CLI subcommand, a test that runs another task's file) must list that task in `dependsOn`, so it lands in a later level. The adversary judges a task branch against the whole plan goal, and a consumer in the same level as its producer is judged before the producer's work exists on its branch: on board-reorder (2026-09-07) that blocked four runs in a row. `plan.mjs validate` reports the pair when a spec or verify command names a file another task owns with no dependency between them; routes and subcommands it cannot see, so check those yourself.

package/node_modules/@dougharness/flow/agents/reviewer.md

@@ -26,3 +26,5 @@ Review the diff, not the description of the diff. Get it with `git diff <base>..
 Severity: `blocker` fails the review; `major` should be fixed before merge but does not fail it alone; `minor` is advisory. `approve` is true only with no blockers, `specCompliant` true, and `inScope` true. Do not ask for work beyond the task.
 
 Budget your turns: you have at most 40 tool calls (maxTurns). Read the diff and run the checks your prompt names first, then any deeper probes; stop with at least 5 calls to spare and return your review with what you found: a capped run returns a partial review, never an empty one.
+
+Test runs: Run a full test suite only through `node .doug/hooks/scripts/verify.mjs`, never the gate's commands (the commands in `stopGate.commands`) directly, with or without CI=1: verify.mjs takes gate.lock, so your suite queues behind a running gate instead of overlapping it. Run every other test command, a single test file or a mutation's test run in a scratch copy included, as `node <the worktree>/.doug/hooks/lib/gate-lock.mjs run -- <command>` with the Bash timeout set to 600000, so it waits on gate.lock instead of overlapping a gate; never wrap verify.mjs in gate-lock.mjs, since verify.mjs takes the lock itself. Put env vars right after `--` (`-- CI=1 pnpm exec vitest run <file>`) and quote a compound command as one argument (`-- 'cd dir && vitest run x'`).

package/node_modules/@dougharness/flow/agents/tester.md

@@ -19,3 +19,5 @@ You write the tests for the behavior the brief names. The brief carries the repo
 6. Scratch files go under `.doug/.state/scratch`; protect-paths keeps refusing the Claude Code session scratchpad, which is outside the project.
 7. Run any command that can take over 120 s with the Bash timeout set to 600000, and hand back only after it exits.
 8. On a tests-only card, run the brief's mutation list yourself in a scratch copy or git worktree under `.doug/.state`, run the one test file there, report each result, and remove the copy; never edit a production file in the live checkout.
+9. Run a full test suite only through `node .doug/hooks/scripts/verify.mjs`, never the gate's commands (the commands in `stopGate.commands`) directly, with or without CI=1: verify.mjs takes gate.lock, so your suite queues behind a running gate instead of overlapping it.
+10. Run every other test command, a single test file or a mutation's test run in a scratch copy included, as `node <the worktree>/.doug/hooks/lib/gate-lock.mjs run -- <command>` with the Bash timeout set to 600000, so it waits on gate.lock instead of overlapping a gate; never wrap verify.mjs in gate-lock.mjs, since verify.mjs takes the lock itself. Put env vars right after `--` (`-- CI=1 pnpm exec vitest run <file>`) and quote a compound command as one argument (`-- 'cd dir && vitest run x'`).

package/node_modules/@dougharness/flow/lib/card-loop.mjs

@@ -102,6 +102,14 @@ export const BRIEF_RULES = {
     seats: ["coder", "reviewer", "tester"],
     when: "mutations",
   },
+  "suites-through-verify": {
+    text: "Run a full test suite only through `node .doug/hooks/scripts/verify.mjs`, never the gate's commands (the commands in `stopGate.commands`) directly, with or without CI=1: verify.mjs takes gate.lock, so your suite queues behind a running gate instead of overlapping it.",
+    seats: ["tester", "coder", "reviewer", "gate"],
+  },
+  "tests-take-gate-lock": {
+    text: "Run every other test command, a single test file or a mutation's test run in a scratch copy included, as `node <card worktree>/.doug/hooks/lib/gate-lock.mjs run -- <command>` with the Bash timeout set to 600000, so it waits on gate.lock instead of overlapping a gate; never wrap verify.mjs in gate-lock.mjs, since verify.mjs takes the lock itself. Put env vars right after `--` (`-- CI=1 pnpm exec vitest run <file>`) and quote a compound command as one argument (`-- 'cd dir && vitest run x'`).",
+    seats: ["tester", "coder", "reviewer"],
+  },
   "reviewer-reruns-mutations": {
     text: "Rerun every listed mutation yourself and add your own (own: true); read the diff only after running them.",
     seats: ["reviewer"],
@@ -854,15 +862,17 @@ export function next(state, handBack) {
       // An evidenced major gets the same one fix pass; a major without evidence and a minor stay advisory.
       const majors = findings.filter((f) => f.severity === "major" && nonBlank(f.evidence));
       if (blockers.length === 0 && majors.length === 0) return advance(s, "gate", "ok", { acc });
-      // A reviewer round that carried a user answer and still has an open finding gets one extra coder round.
-      const answered = (s.answers || []).some(
-        (a) => a.seat === "reviewer" && (a.round ?? 1) <= (s.seatRuns.reviewer || 0),
-      );
-      if (s.counters.fixPasses >= 1 && answered && !s.answerCoderUsed) {
+      // Each user answer to a reviewer stop gets one coder round when the reviewer that carried it still has an open finding.
+      const given = s.answerCoderRounds || [];
+      const fresh = (s.answers || [])
+        .filter((a) => a.seat === "reviewer" && (a.round ?? 1) <= (s.seatRuns.reviewer || 0))
+        .map((a) => a.round ?? 1)
+        .filter((r) => !given.includes(r));
+      if (s.counters.fixPasses >= 1 && fresh.length > 0) {
         return advance(s, buildSeat(s), "blockers", {
           acc,
           fixFor: "review",
-          answerCoderUsed: true,
+          answerCoderRounds: [...given, ...fresh],
           lastFindings: findings.filter((f) => f.severity !== "minor"),
         });
       }

package/node_modules/@dougharness/flow/lib/code-index.mjs

@@ -305,7 +305,7 @@ export async function buildIndex(m, dir, opts = {}) {
       .map((r) => r.id);
     const indexedAt = toIsoTimestamp(now);
 
-    m.exec("BEGIN");
+    m.exec("BEGIN IMMEDIATE");
     try {
       for (const id of existingIds) {
         if (newIds.has(id)) continue;
@@ -352,7 +352,7 @@ export async function buildIndex(m, dir, opts = {}) {
       .prepare("SELECT id FROM code_chunks WHERE path = ?")
       .all(path)
       .map((r) => r.id);
-    m.exec("BEGIN");
+    m.exec("BEGIN IMMEDIATE");
     try {
       for (const id of ids) {
         m.prepare("DELETE FROM code_chunks WHERE id = ?").run(id);

package/node_modules/@dougharness/flow/lib/coordinator.mjs

@@ -260,7 +260,7 @@ export function queenKind(card) {
 
 // Which ready cards to start now. A flow card without a plan comes back as needsPlan (its owned files are
 // unknown until a planner runs); with a plan it is checked like any card. A card is launched when it conflicts
-// with nothing in flight and nothing launched before it; otherwise it is held against what it met first.
+// with nothing in flight and nothing launched or waiting for a plan before it; otherwise it is held against what it met first.
 // needsPlan and launch together never exceed `slots`; a held card takes no slot.
 export function pickCards(arg) {
   const { ready = [], inFlight = [], slots = 0, plans = {}, roots } = arg && typeof arg === "object" ? arg : {};
@@ -270,6 +270,7 @@ export function pickCards(arg) {
   const withPlan = (c) => (c.track === "flow" && planOf(c) ? { ...c, plan: planOf(c) } : c);
   const running = (inFlight || []).filter((c) => c && typeof c === "object").map(withPlan);
   const launched = [];
+  const pending = [];
   let blocked = false;
   for (const raw of ready || []) {
     if (!raw || typeof raw !== "object") continue;
@@ -284,11 +285,12 @@ export function pickCards(arg) {
     if (out.launch.length + out.needsPlan.length >= slots) continue;
     if (raw.track === "flow" && !planOf(raw)) {
       out.needsPlan.push(raw.id);
+      pending.push(raw);
       continue;
     }
     const card = withPlan(raw);
     let met = null;
-    for (const other of [...running, ...launched]) {
+    for (const other of [...running, ...launched, ...pending]) {
       met = cardConflict(card, other, opts);
       if (met) break;
     }

package/node_modules/@dougharness/flow/lib/decisions.mjs

@@ -10,7 +10,7 @@
 // when a matching file is read. Source: https://code.claude.com/docs/en/memory.md#path-specific-rules
 import { existsSync, readFileSync, readdirSync } from "node:fs";
 import { join } from "node:path";
-import { unifiedDiff, writeProposals, countLines, insertBulletUnderHeading, removeExactLine, renderRule } from "./learn.mjs";
+import { unifiedDiff, writeProposals, countLines, CLAUDE_MD_MAX_LINES, exceedsClaudeMdLimit, insertBulletUnderHeading, removeExactLine, renderRule } from "./learn.mjs";
 
 const DECISIONS_RELDIR = "docs/decisions";
 const RULES_RELDIR = ".claude/rules";
@@ -295,7 +295,7 @@ export function proposeClaudeMd({ dir, edits, now = new Date(), dryRun = false }
     return { ok: false, reason: "this edit would change the fenced Commands block, which is not editable here" };
   }
   const after = countLines(newText);
-  if (after > 60) return { ok: false, reason: `CLAUDE.md would be ${after} lines, over its 60-line limit` };
+  if (exceedsClaudeMdLimit(newText)) return { ok: false, reason: `CLAUDE.md would be ${after} lines, over its ${CLAUDE_MD_MAX_LINES}-line limit` };
 
   const diffResult = diffOrRefuse(CLAUDE_MD_RELPATH, oldText, newText);
   if (!diffResult.ok) return diffResult;

package/node_modules/@dougharness/flow/lib/learn.mjs

@@ -325,12 +325,19 @@ function normalize(s) {
 }
 
 // wc -l semantics: the count of newline-terminated lines, not split("\n").length (which counts one extra empty
-// element for a file ending in "\n"). CLAUDE.md's own header says "Keep it under 60 lines" against this count.
+// element for a file ending in "\n"). CLAUDE.md's own header says "Keep it to 200 lines or fewer" against this count.
 export function countLines(text) {
   if (text === "") return 0;
   return text.endsWith("\n") ? text.split("\n").length - 1 : text.split("\n").length;
 }
 
+// The one CLAUDE.md size limit, shared by learn.mjs and decisions.mjs: 200 lines are allowed, 201 are over. 200 is
+// Anthropic's documented target per CLAUDE.md file, not a measured threshold.
+export const CLAUDE_MD_MAX_LINES = 200;
+export function exceedsClaudeMdLimit(text) {
+  return countLines(text) > CLAUDE_MD_MAX_LINES;
+}
+
 function findSection(lines, heading) {
   const start = lines.findIndex((l) => l.trim() === heading);
   if (start === -1) return null;
@@ -532,7 +539,7 @@ export function proposeChanges(signals, { dir, claudeMd, config, skills = [] } =
 
   // promote: a pitfall cited by RULE_MIN_CARDS distinct cards over RULE_MIN_SESSIONS distinct sessions (card
   // memory-failure-lessons, ADR 0019 line 60). With known files it becomes a path-scoped .claude/rules file; with none, a
-  // CLAUDE.md Gotchas bullet (refused at the 60-line cap). Feedback lessons have no trigger.
+  // CLAUDE.md Gotchas bullet (refused over the 200-line limit). Feedback lessons have no trigger.
   for (const r of signals.lessons.pitfalls ?? []) {
     if (r.cards.length < RULE_MIN_CARDS || r.sessions.length < RULE_MIN_SESSIONS) continue;
     const evidence = { id: r.id, cards: r.cards, sessions: r.sessions, citations: r.citations, files: r.files };
@@ -553,8 +560,8 @@ export function proposeChanges(signals, { dir, claudeMd, config, skills = [] } =
       proposals.push({ id: nextId(), kind: "promote", target: "CLAUDE.md", reason: `${reason}, but CLAUDE.md has no "${heading}" section`, evidence, diff: null });
       continue;
     }
-    if (countLines(updated) >= 60) {
-      proposals.push({ id: nextId(), kind: "promote", target: "CLAUDE.md", reason: `${reason}, but CLAUDE.md is at its 60-line limit (would be ${countLines(updated)})`, evidence, diff: null });
+    if (exceedsClaudeMdLimit(updated)) {
+      proposals.push({ id: nextId(), kind: "promote", target: "CLAUDE.md", reason: `${reason}, but CLAUDE.md is over its ${CLAUDE_MD_MAX_LINES}-line limit (would be ${countLines(updated)})`, evidence, diff: null });
       continue;
     }
     proposals.push({ id: nextId(), kind: "promote", target: "CLAUDE.md", reason, evidence, diff: unifiedDiff("CLAUDE.md", claudeMd, updated) });

package/node_modules/@dougharness/flow/lib/memory.mjs

@@ -275,7 +275,7 @@ const V1_OUTCOME_COLUMNS = [
 ];
 
 function migrateV1ToV2(db) {
-  db.exec("BEGIN");
+  db.exec("BEGIN IMMEDIATE");
   try {
     db.exec(`CREATE TABLE outcomes_v2 (${OUTCOMES_COLUMNS_SQL});`);
     db.exec(
@@ -300,7 +300,7 @@ const V2_LESSON_COLUMNS = [
 ];
 
 function migrateV2ToV3(db) {
-  db.exec("BEGIN");
+  db.exec("BEGIN IMMEDIATE");
   try {
     db.exec(`CREATE TABLE lessons_v3 (${LESSONS_COLUMNS_SQL});`);
     db.exec(
@@ -320,7 +320,7 @@ function migrateV2ToV3(db) {
 // v3 had no reflections table. Unlike v1->v2 and v2->v3, nothing existing is rebuilt: adding a table needs no
 // rebuild-under-a-temp-name dance, just the CREATE plus the version bump, in the same transactional pattern.
 function migrateV3ToV4(db) {
-  db.exec("BEGIN");
+  db.exec("BEGIN IMMEDIATE");
   try {
     db.exec(`CREATE TABLE reflections (${REFLECTIONS_COLUMNS_SQL});`);
     db.exec("PRAGMA user_version = 4");
@@ -338,7 +338,7 @@ function migrateV3ToV4(db) {
 // this guard makes the step a no-op there instead of a duplicate-column error, while still doing the ALTER for a
 // genuine v4 store that only ever had the v4 columns.
 function migrateV4ToV5(db) {
-  db.exec("BEGIN");
+  db.exec("BEGIN IMMEDIATE");
   try {
     const cols = db.prepare("PRAGMA table_info(outcomes)").all().map((c) => c.name);
     if (!cols.includes("partial")) db.exec("ALTER TABLE outcomes ADD COLUMN partial INTEGER;");
@@ -354,7 +354,7 @@ function migrateV4ToV5(db) {
 // the four CREATEs and the version bump. No add-only trigger is added for these tables — the code index is a
 // cache, never add-only.
 function migrateV5ToV6(db) {
-  db.exec("BEGIN");
+  db.exec("BEGIN IMMEDIATE");
   try {
     db.exec(CODE_INDEX_SCHEMA_SQL);
     db.exec("PRAGMA user_version = 6");
@@ -381,7 +381,7 @@ const V7_CONDITION_COLUMNS = [
 ];
 
 function migrateV6ToV7(db) {
-  db.exec("BEGIN");
+  db.exec("BEGIN IMMEDIATE");
   try {
     const cols = db.prepare("PRAGMA table_info(outcomes)").all().map((c) => c.name);
     for (const [name, type] of V7_CONDITION_COLUMNS) {
@@ -403,7 +403,7 @@ function migrateV6ToV7(db) {
 const V8_CODEX_COLUMNS = [["codex_usd", "REAL"]];
 
 function migrateV7ToV8(db) {
-  db.exec("BEGIN");
+  db.exec("BEGIN IMMEDIATE");
   try {
     const cols = db.prepare("PRAGMA table_info(outcomes)").all().map((c) => c.name);
     for (const [name, type] of V8_CODEX_COLUMNS) {
@@ -424,7 +424,7 @@ function migrateV7ToV8(db) {
 const V9_STOP_COLUMNS = [["stop_class", "TEXT"]];
 
 function migrateV8ToV9(db) {
-  db.exec("BEGIN");
+  db.exec("BEGIN IMMEDIATE");
   try {
     const cols = db.prepare("PRAGMA table_info(outcomes)").all().map((c) => c.name);
     for (const [name, type] of V9_STOP_COLUMNS) {
@@ -445,7 +445,7 @@ function migrateV8ToV9(db) {
 const V10_MEMORY_COLUMNS = [["memory_config", "TEXT"]];
 
 function migrateV9ToV10(db) {
-  db.exec("BEGIN");
+  db.exec("BEGIN IMMEDIATE");
   try {
     const cols = db.prepare("PRAGMA table_info(outcomes)").all().map((c) => c.name);
     for (const [name, type] of V10_MEMORY_COLUMNS) {
@@ -463,7 +463,7 @@ function migrateV9ToV10(db) {
 // proposal a repeat of the lesson. One guarded ALTER (LESSONS_COLUMNS_SQL already carries seen for a rebuilt
 // store), then the version bump. seen is not in the no-rewrite trigger's column list.
 function migrateV10ToV11(db) {
-  db.exec("BEGIN");
+  db.exec("BEGIN IMMEDIATE");
   try {
     const cols = db.prepare("PRAGMA table_info(lessons)").all().map((c) => c.name);
     if (!cols.includes("seen")) db.exec("ALTER TABLE lessons ADD COLUMN seen INTEGER NOT NULL DEFAULT 0;");
@@ -480,7 +480,7 @@ function migrateV10ToV11(db) {
 // carries both for a rebuilt store), then the version bump. Neither is in the no-rewrite trigger's column list,
 // and the no-delete trigger is unchanged: an archived row is kept.
 function migrateV11ToV12(db) {
-  db.exec("BEGIN");
+  db.exec("BEGIN IMMEDIATE");
   try {
     const cols = db.prepare("PRAGMA table_info(lessons)").all().map((c) => c.name);
     if (!cols.includes("archived")) db.exec("ALTER TABLE lessons ADD COLUMN archived TEXT;");
@@ -493,10 +493,14 @@ function migrateV11ToV12(db) {
   }
 }
 
+// Bounded wait for another process's write lock; well under the 5 s SessionStart hook timeout.
+export const MEMORY_BUSY_TIMEOUT_MS = 2000;
+
 export function openMemory(dir) {
   const file = memoryPath(dir);
   mkdirSync(dirname(file), { recursive: true });
-  const db = new DatabaseSync(file);
+  const db = new DatabaseSync(file, { timeout: MEMORY_BUSY_TIMEOUT_MS });
+  db.exec(`PRAGMA busy_timeout = ${MEMORY_BUSY_TIMEOUT_MS}`);
   db.exec("PRAGMA foreign_keys = ON");
   const version = db.prepare("PRAGMA user_version").get().user_version;
   if (version === 0) {
@@ -620,7 +624,8 @@ export function inspectMemory(dir) {
   out.exists = true;
   let db;
   try {
-    db = new DatabaseSync(file, { readOnly: true });
+    db = new DatabaseSync(file, { readOnly: true, timeout: MEMORY_BUSY_TIMEOUT_MS });
+    db.exec(`PRAGMA busy_timeout = ${MEMORY_BUSY_TIMEOUT_MS}`);
     out.userVersion = db.prepare("PRAGMA user_version").get().user_version;
     out.quickCheck = String(db.prepare("PRAGMA quick_check").get().quick_check);
   } catch (err) {
@@ -688,7 +693,7 @@ export function addLesson(m, opts) {
     commit_sha: commit,
     created,
   };
-  m.exec("BEGIN");
+  m.exec("BEGIN IMMEDIATE");
   try {
     m.prepare(
       `INSERT INTO lessons (id, text, kind, scope, citation, source_agent, source_model, task, card, commit_sha, created)
@@ -2193,7 +2198,7 @@ const ROUND_COLUMNS = new Set(["passes", "fix_passes"]);
 export function recordOutcomes(m, rows) {
   let inserted = 0;
   let updated = 0;
-  m.exec("BEGIN");
+  m.exec("BEGIN IMMEDIATE");
   try {
     for (const row of rows) {
       const existing = m.prepare("SELECT id FROM outcomes WHERE run = ? AND task = ?").get(row.run, row.task);
@@ -2813,7 +2818,7 @@ export async function runReflect(m, report, opts = {}) {
   if (dryRun) {
     counters = computeReflectCounters(m, blocks, report, { apply: false, harmfulIds });
   } else {
-    m.exec("BEGIN");
+    m.exec("BEGIN IMMEDIATE");
     try {
       counters = computeReflectCounters(m, blocks, report, { apply: true, harmfulIds });
       for (const id of counters.harmful) {
@@ -3147,6 +3152,8 @@ export function failureSlice(dir, card, { session = null } = {}) {
           card: cardName,
           run,
           line: i + 1,
+          class: kind === "block" ? v.class : null,
+          files: kind === "block" && Array.isArray(v.files) ? v.files.filter((f) => typeof f === "string" && f !== "") : [],
           session: sessionOf(v) ?? runSession ?? (typeof session === "string" && session !== "" ? session : null),
           text: failureItemText(kind, body, e.text),
         });
@@ -3179,12 +3186,12 @@ export function readPitfallOccurrences(dir) {
 }
 
 export function recordPitfallOccurrence(dir, occ) {
-  const { lesson, citation, card = null, run = null, session = null, at = nowIso() } = occ ?? {};
+  const { lesson, citation, card = null, run = null, session = null, at = nowIso(), via, class: cls = null, files = [] } = occ ?? {};
   if (typeof lesson !== "string" || typeof citation !== "string") throw new Error("recordPitfallOccurrence needs a lesson and a citation");
   if (readPitfallOccurrences(dir).some((o) => o.lesson === lesson && o.citation === citation)) return { written: false };
   const path = join(dir, PITFALL_LEDGER_RELPATH);
   mkdirSync(dirname(path), { recursive: true });
-  appendFileSync(path, JSON.stringify({ lesson, citation, card, run, session, at }) + "\n", "utf8");
+  appendFileSync(path, JSON.stringify({ lesson, citation, card, run, session, at, ...(via ? { via } : {}), class: typeof cls === "string" ? cls : null, files: Array.isArray(files) ? files : [] }) + "\n", "utf8");
   return { written: true };
 }
 
@@ -3252,6 +3259,24 @@ export async function runFailureReflect(m, opts = {}) {
   const existing = m.prepare("SELECT * FROM reflections WHERE report_hash = ?").get(key);
   if (existing) return { alreadyReflected: true, ...base, row: reflectionRowToObject(existing) };
 
+  // Code-side repeats (ADR 0019 line 60): a real block with the same class on a file a live pitfall's recorded
+  // occurrence also names is another occurrence of that pitfall. Empty files never match.
+  const fileRepeated = [];
+  const sharesFile = (a, b) => Array.isArray(a) && Array.isArray(b) && a.some((f) => b.includes(f));
+  for (const item of slice.items) {
+    if (item.kind !== "block" || !item.files.length) continue;
+    for (const o of readPitfallOccurrences(dir)) {
+      if (o.class !== item.class || !sharesFile(o.files, item.files)) continue;
+      const target = getLesson(m, o.lesson);
+      if (!target || target.kind !== "pitfall" || target.superseded_by) continue;
+      // List the pitfall only when this match is new: a block already recorded (a card's second stop re-reads it) adds nothing.
+      const isNew = dryRun
+        ? !readPitfallOccurrences(dir).some((x) => x.lesson === target.id && x.citation === item.ref)
+        : recordPitfallOccurrence(dir, { lesson: target.id, citation: item.ref, card: item.card, run: item.run, session: item.session, at: now, via: "file", class: item.class, files: item.files }).written;
+      if (isNew && !fileRepeated.includes(target.id)) fileRepeated.push(target.id);
+    }
+  }
+
   const prompt = buildFailureReflectPrompt(slice, { existingLessons: listLessons(m) });
   // A dry run with no propose makes no model call: it returns the prompt it would send and spends nothing.
   if (dryRun && typeof propose !== "function") {
@@ -3268,10 +3293,10 @@ export async function runFailureReflect(m, opts = {}) {
   const byRef = new Map(slice.items.map((i) => [i.ref, i]));
   const appended = [];
   const appendedIds = new Set();
-  const repeated = [];
+  const repeated = [...fileRepeated];
   const rejected = [];
   const occur = (lesson, item) => {
-    if (!dryRun) recordPitfallOccurrence(dir, { lesson, citation: item.ref, card: item.card, run: item.run, session: item.session, at: now });
+    if (!dryRun) recordPitfallOccurrence(dir, { lesson, citation: item.ref, card: item.card, run: item.run, session: item.session, at: now, class: item.class, files: item.files });
     if (!repeated.includes(lesson)) repeated.push(lesson);
   };
   for (const p of result.lessons) {
@@ -3338,7 +3363,7 @@ export async function runFailureReflect(m, opts = {}) {
     });
     appended.push(row.id);
     appendedIds.add(row.id);
-    recordPitfallOccurrence(dir, { lesson: row.id, citation: item.ref, card: item.card, run: item.run, session: item.session, at: now });
+    recordPitfallOccurrence(dir, { lesson: row.id, citation: item.ref, card: item.card, run: item.run, session: item.session, at: now, class: item.class, files: item.files });
   }
 
   const sessionId = result.sessionId || null;

package/node_modules/@dougharness/flow/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@dougharness/flow",
-  "version": "1.5.0",
+  "version": "1.6.0",
   "private": true,
   "description": "Plan, approve, implement one task per worktree, verify, review: a Workflow-tool template and subagents for Claude Code.",
   "type": "module",

package/node_modules/@dougharness/flow/scripts/autopilot.mjs

@@ -37,6 +37,20 @@ import { SEATS } from "../lib/card-loop.mjs";
 import { planFor, reportPathFor } from "../lib/plan.mjs";
 import { readMemoryConfig, readMemoryStaleDays } from "../lib/embeddings.mjs";
 
+// Card memory-failures-wiring (user decision, 2026-10-28): a stopped card starts `memory.mjs reflect --failures
+// <card> --max-usd 0.5 --detach` (job failures-<card>, cheap row), after its run history is written. The queue
+// approval is the approval. A start that fails (a live job holds the name) warns and never fails the report.
+function startFailuresReflect(dir, id) {
+  try {
+    execFileSync(process.execPath, [join(dirname(fileURLToPath(import.meta.url)), "memory.mjs"), "reflect", "--failures", id, dir, "--max-usd", "0.5", "--detach"], {
+      stdio: ["ignore", "ignore", "pipe"],
+      env: process.env,
+    });
+  } catch (e) {
+    process.stderr.write(`autopilot: warning: cannot start reflect --failures for ${id}: ${String(e.stderr || e.message || e).trim().split("\n")[0]}\n`);
+  }
+}
+
 const argv = process.argv.slice(2);
 const opts = {};
 const pos = [];
@@ -566,6 +580,7 @@ switch (cmd) {
         process.stderr.write(`autopilot: warning: cannot write the run history for ${c.id}: ${e.message || e}\n`);
       }
     }
+    if (kind === "hand" && parsed !== null && (parsed.report ?? parsed)?.outcome === "stopped") startFailuresReflect(dir, c.id);
     if (kind === "flow" && parsed !== null && typeof parsed === "object" && !Array.isArray(parsed) && parsed.ok === false && !parsed.paused) {
       try {
         const mem = await import("../lib/memory.mjs");
@@ -645,6 +660,7 @@ switch (cmd) {
         process.stderr.write(`autopilot: warning: cannot write the run history for ${c.id}: ${e.message || e}\n`);
       }
     }
+    if (kind === "flow" && parsed !== null && typeof parsed === "object" && !Array.isArray(parsed) && parsed.ok === false && !parsed.paused) startFailuresReflect(dir, c.id);
     const v = classifyNotification(kind, { status: "completed", result: parsed === null ? text : parsed });
     if (v.action === "ask") {
       let answered = false;

package/node_modules/@dougharness/flow/scripts/board.mjs

@@ -145,7 +145,11 @@ function unknownFlagFor(cmd, opts) {
 }
 
 function dirFrom(args, n) {
-  return resolve(process.env.CLAUDE_PROJECT_DIR || args[n] || process.cwd());
+  const d = resolve(process.env.CLAUDE_PROJECT_DIR || args[n] || process.cwd());
+  if (!existsSync(join(d, ".doug")) && !existsSync(join(d, "docs", "board.json"))) {
+    fail(`not a Doug project: ${d} has no .doug/`, 1);
+  }
+  return d;
 }
 
 if (cmd === "epic" || cmd === "milestone") {

package/node_modules/@dougharness/flow/scripts/learn.mjs

@@ -43,7 +43,9 @@ for (const a of argv) {
 const [cmd, ...rest] = positional;
 
 function dirFrom(args, n) {
-  return resolve(process.env.CLAUDE_PROJECT_DIR || args[n] || process.cwd());
+  const d = resolve(process.env.CLAUDE_PROJECT_DIR || args[n] || process.cwd());
+  if (!existsSync(join(d, ".doug"))) fail(`not a Doug project: ${d} has no .doug/`, 1);
+  return d;
 }
 
 function readClaudeMd(dir) {