@dotdrelle/wiki-manager 0.14.8 → 0.14.9

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@dotdrelle/wiki-manager",
-  "version": "0.14.8",
+  "version": "0.14.9",
   "description": "Agentic shell and orchestration cockpit for llm-wiki workspaces.",
   "license": "PolyForm-Noncommercial-1.0.0",
   "author": "dotrelle",
@@ -46,11 +46,6 @@
     "cli"
   ],
   "packageManager": "pnpm@10.29.2",
-  "pnpm": {
-    "onlyBuiltDependencies": [
-      "bun"
-    ]
-  },
   "dependencies": {
     "@langchain/langgraph": "^1.3.2",
     "@opentui/core": "^0.3.2",

package/src/agent/graph.test.js

@@ -801,16 +801,10 @@ test('buildAgentSystemPrompt forbids inventing slash commands or arguments', ()
   assert.doesNotMatch(prompt, /executor:"/);
 });
 
-test('workspace package manifest is not exposed as an executable skill', () => {
+test('workspace skills are discovered from the fixed .wiki/skills directory', () => {
   const root = mkdtempSync(join(tmpdir(), 'wiki-manager-skills-'));
   try {
     mkdirSync(join(root, '.wiki', 'skills'), { recursive: true });
-    writeFileSync(join(root, 'skill.yaml'), [
-      'name: basic',
-      'description: Demo workspace package',
-      'entrypoints:',
-      '  uiSkillDir: .wiki/skills',
-    ].join('\n'));
     writeFileSync(join(root, '.wiki', 'skills', 'ingest.md'), [
       '---',
       'name: ingest',
@@ -820,7 +814,6 @@ test('workspace package manifest is not exposed as an executable skill', () => {
     ].join('\n'));
 
     const prompt = buildAgentSystemPrompt({ session: sessionBase({ workspacePath: root }) });
-    assert.doesNotMatch(prompt, /\/basic:/);
     assert.match(prompt, /\/ingest: Ingest pending sources/);
   } finally {
     rmSync(root, { recursive: true, force: true });

package/src/cli/wiki-manager.js

@@ -478,7 +478,7 @@ async function runRuntime(argv, agent) {
       'Defaults:',
       '  --host 127.0.0.1',
       '  --port 7788',
-      '  --state-dir .wiki-manager',
+      '  --state-dir .wiki/runtime',
     ].join('\n'));
     return;
   }

package/src/core/buildInfo.json

@@ -1,4 +1,4 @@
 {
-  "version": "0.14.8",
-  "commit": "d3995e0"
+  "version": "0.14.9",
+  "commit": "768fb25"
 }

package/src/core/env.js

@@ -1,4 +1,4 @@
-import { copyFileSync, existsSync, readFileSync, writeFileSync } from 'node:fs';
+import { copyFileSync, existsSync, mkdirSync, readFileSync, renameSync, writeFileSync } from 'node:fs';
 import { dirname, isAbsolute, join, resolve } from 'node:path';
 import { fileURLToPath } from 'node:url';
 
@@ -13,7 +13,14 @@ export function managerStateDir() {
 }
 
 export function managerRuntimeDir() {
-  return join(managerStateDir(), '.wiki-manager');
+  const root = managerStateDir();
+  const runtimeDir = join(root, '.wiki', 'runtime');
+  const legacyDir = join(root, '.wiki-manager');
+  if (!existsSync(runtimeDir) && existsSync(legacyDir)) {
+    mkdirSync(join(root, '.wiki'), { recursive: true });
+    renameSync(legacyDir, runtimeDir);
+  }
+  return runtimeDir;
 }
 
 export function defaultRuntimeStateDir() {

package/src/core/mcp.js

@@ -1,7 +1,7 @@
 import { existsSync, readFileSync } from 'node:fs';
 import { managerEnvFile, managerMcpEndpointsFile, readEnvFile } from './env.js';
 
-const WIKI_MANAGER_VERSION = '0.14.8';
+const WIKI_MANAGER_VERSION = '0.14.9';
 
 function envValue(key) {
   const filePath = managerEnvFile();

package/src/core/skills.js

@@ -1,6 +1,5 @@
 import { existsSync, readdirSync, readFileSync } from 'node:fs';
 import { basename, join } from 'node:path';
-import { parse as parseYaml } from 'yaml';
 
 const SKILL_NAME_RE = /^[a-zA-Z0-9_-]{1,80}$/;
 const DEFAULT_UI_SKILL_DIR = '.wiki/skills';
@@ -51,33 +50,6 @@ export function readOptionalText(filePath) {
   return readFileSync(filePath, 'utf8').trim();
 }
 
-function safeRelativeEntry(value, fallback) {
-  const text = String(value || fallback).trim();
-  if (!text || text.startsWith('/') || text.includes('..')) return fallback;
-  return text;
-}
-
-function readWorkspaceManifest(workspacePath) {
-  const manifestPath = join(workspacePath, 'skill.yaml');
-  if (!existsSync(manifestPath)) return null;
-  try {
-    const manifest = parseYaml(readFileSync(manifestPath, 'utf8'));
-    if (!manifest || typeof manifest !== 'object' || Array.isArray(manifest)) return null;
-    return { manifest, manifestPath };
-  } catch {
-    return null;
-  }
-}
-
-function workspaceUiSkillDir(loadedManifest = null) {
-  if (!loadedManifest) return DEFAULT_UI_SKILL_DIR;
-  const { manifest } = loadedManifest;
-  const entrypoints = manifest?.entrypoints && typeof manifest.entrypoints === 'object'
-    ? manifest.entrypoints
-    : {};
-  return safeRelativeEntry(entrypoints.uiSkillDir, DEFAULT_UI_SKILL_DIR);
-}
-
 function collectDirectorySkills(dir, scope) {
   if (!existsSync(dir)) return [];
   return readdirSync(dir, { withFileTypes: true })
@@ -92,8 +64,7 @@ function collectDirectorySkills(dir, scope) {
 export function listSkills(session = {}) {
   const skills = [];
   if (session.workspacePath) {
-    const loadedManifest = readWorkspaceManifest(session.workspacePath);
-    skills.push(...collectDirectorySkills(join(session.workspacePath, workspaceUiSkillDir(loadedManifest)), 'workspace'));
+    skills.push(...collectDirectorySkills(join(session.workspacePath, DEFAULT_UI_SKILL_DIR), 'workspace'));
   }
 
   const byName = new Map();

package/src/runtime/recoveryManager.test.js

@@ -81,7 +81,7 @@ test('recoveryManager requeues an active job by idempotencyKey when status is st
 
 function storeWithActiveTask() {
   const root = mkdtempSync(join(tmpdir(), 'wiki-manager-recovery-'));
-  const stateDir = join(root, '.wiki-manager');
+  const stateDir = join(root, '.wiki', 'runtime');
   const store = openRuntimeStore({ stateDir });
   const runId = 'run-recovery';
   const taskId = 'run-recovery:build-a';

package/src/runtime/store.js

@@ -1261,7 +1261,10 @@ function ensureRuntimeMeta(metaPath) {
 
 function migrateLegacyRuntimeMeta(metaPath) {
   if (existsSync(metaPath)) return;
-  const legacyPath = join(dirname(metaPath), '..', '.wiki', 'meta.json');
+  const stateDir = dirname(metaPath);
+  const legacyPath = stateDir.endsWith(join('.wiki', 'runtime'))
+    ? join(stateDir, '..', 'meta.json')
+    : join(stateDir, '..', '.wiki', 'meta.json');
   if (!existsSync(legacyPath)) return;
   mkdirSync(dirname(metaPath), { recursive: true });
   renameSync(legacyPath, metaPath);

package/src/runtime/store.test.js

@@ -8,7 +8,7 @@ import { createAgentEvent, dispatchAgentEvent } from '../core/agentEvents.js';
 import { openRuntimeStore } from './store.js';
 
 function runtimeStateDir() {
-  return join(mkdtempSync(join(tmpdir(), 'wiki-manager-runtime-')), '.wiki-manager');
+  return join(mkdtempSync(join(tmpdir(), 'wiki-manager-runtime-')), '.wiki', 'runtime');
 }
 
 function plannedTask(id) {
@@ -223,10 +223,10 @@ test('runtime store persists task assignments attempts and results from events',
 
 test('runtime store writes schema versions to sqlite and meta file', () => {
   const root = mkdtempSync(join(tmpdir(), 'wiki-manager-runtime-'));
-  const stateDir = join(root, '.wiki-manager');
+  const stateDir = join(root, '.wiki', 'runtime');
   const store = openRuntimeStore({ stateDir });
   const version = store.db.prepare('PRAGMA user_version').get().user_version;
-  const meta = JSON.parse(readFileSync(join(root, '.wiki-manager', 'meta.json'), 'utf8'));
+  const meta = JSON.parse(readFileSync(join(root, '.wiki', 'runtime', 'meta.json'), 'utf8'));
 
   assert.equal(version, 1);
   assert.equal(meta.schemaVersion, 1);
@@ -249,7 +249,7 @@ test('runtime store refuses unknown sqlite schema versions', () => {
 
 test('runtime store refuses unknown runtime metadata versions', () => {
   const root = mkdtempSync(join(tmpdir(), 'wiki-manager-runtime-'));
-  const stateDir = join(root, '.wiki-manager');
+  const stateDir = join(root, '.wiki', 'runtime');
   mkdirSync(stateDir, { recursive: true });
   writeFileSync(join(stateDir, 'meta.json'), '{"schemaVersion":99}\n', 'utf8');
 
@@ -259,9 +259,9 @@ test('runtime store refuses unknown runtime metadata versions', () => {
   );
 });
 
-test('runtime store migrates legacy .wiki metadata to .wiki-manager', () => {
+test('runtime store migrates legacy .wiki metadata to .wiki/runtime', () => {
   const root = mkdtempSync(join(tmpdir(), 'wiki-manager-runtime-'));
-  const stateDir = join(root, '.wiki-manager');
+  const stateDir = join(root, '.wiki', 'runtime');
   mkdirSync(join(root, '.wiki'), { recursive: true });
   writeFileSync(join(root, '.wiki', 'meta.json'), '{"schemaVersion":1,"legacy":true}\n', 'utf8');
 

package/wiki-workspace

@@ -17,7 +17,12 @@ WORKSPACES_DIR="${WIKI_WORKSPACES_DIR:-$DEFAULT_MANAGER_DIR/workspaces}"
 MANAGER_ENV_FILE="${WIKI_MANAGER_ENV_FILE:-$DEFAULT_MANAGER_DIR/.env}"
 MANAGER_ENDPOINTS_FILE="${WIKI_MANAGER_ENDPOINTS_FILE:-$DEFAULT_MANAGER_DIR/mcp.endpoints.json}"
 MANAGER_STATE_DIR="$(cd "$(dirname "$MANAGER_ENV_FILE")" && pwd)"
-MANAGER_RUNTIME_DIR="$MANAGER_STATE_DIR/.wiki-manager"
+MANAGER_RUNTIME_DIR="$MANAGER_STATE_DIR/.wiki/runtime"
+LEGACY_MANAGER_RUNTIME_DIR="$MANAGER_STATE_DIR/.wiki-manager"
+if [[ ! -e "$MANAGER_RUNTIME_DIR" && -d "$LEGACY_MANAGER_RUNTIME_DIR" ]]; then
+  mkdir -p "$MANAGER_STATE_DIR/.wiki"
+  mv "$LEGACY_MANAGER_RUNTIME_DIR" "$MANAGER_RUNTIME_DIR"
+fi
 CACERT_PATH="${WIKI_MANAGER_CACERT_PATH:-}"
 
 normalize_path() {