@documentation-robotics/cli 0.1.7 → 0.1.9

package/dist/core/model.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/core/model.ts"],
-  "sourcesContent": ["import { Layer } from \"./layer.js\";\nimport { Manifest } from \"./manifest.js\";\nimport { Element } from \"./element.js\";\nimport { GraphModel, type GraphEdge } from \"./graph-model.js\";\nimport { VirtualProjectionEngine } from \"./virtual-projection.js\";\nimport { StagedChangesetStorage } from \"./staged-changeset-storage.js\";\nimport { Relationships } from \"./relationships.js\";\nimport { CANONICAL_LAYER_NAMES } from \"./layers.js\";\nimport type { StagedChange } from \"./changeset.js\";\nimport { ensureDir, writeFile } from \"../utils/file-io.js\";\nimport { getCliVersion } from \"../utils/spec-version.js\";\nimport { startSpan, endSpan, startActiveSpan } from \"../telemetry/index.js\";\nimport { findProjectRoot } from \"../utils/project-paths.js\";\nimport { getNodeType } from \"../generated/node-types.js\";\nimport type { SpecNodeId } from \"../generated/node-types.js\";\nimport type { ManifestData, ModelOptions } from \"../types/index.js\";\nimport path from \"node:path\";\nimport fs from \"node:fs/promises\";\nimport crypto from \"node:crypto\";\n\n/**\n * Derive a deterministic UUID from a path string using SHA-256.\n * Produces a stable UUID4-like value so migration doesn't regenerate UUIDs on every load.\n */\nfunction deterministicUUID(path: string): string {\n  const hash = crypto.createHash(\"sha256\").update(path).digest(\"hex\");\n  return [\n    hash.slice(0, 8),\n    hash.slice(8, 12),\n    \"4\" + hash.slice(13, 16), // version 4 marker\n    ((parseInt(hash.slice(16, 18), 16) & 0x3f) | 0x80).toString(16) + hash.slice(18, 20), // variant\n    hash.slice(20, 32),\n  ].join(\"-\");\n}\n\n/**\n * Convert a PascalCase title to snake_case.\n * Handles acronyms correctly: \"UXApplication\" \u2192 \"ux_application\", \"OpenAPIDocument\" \u2192 \"open_api_document\".\n */\nfunction titleToSnakeCase(title: string): string {\n  return title\n    .replace(/([A-Z]+)([A-Z][a-z])/g, \"$1_$2\") // \"APIDoc\" \u2192 \"API_Doc\"\n    .replace(/([a-z\\d])([A-Z])/g, \"$1_$2\")       // \"appComponent\" \u2192 \"app_Component\"\n    .toLowerCase();\n}\n\n/**\n * Derive a snake_case file stem for a given element type.\n * Uses the spec node title for accurate word boundaries (e.g., \"InputSpacePartition\" \u2192 \"input_space_partition\").\n * Falls back to the raw type string when the title is unavailable.\n */\nfunction typeToSnakeStem(specNodeId: string | undefined, type: string): string {\n  if (specNodeId) {\n    const nodeType = getNodeType(specNodeId as SpecNodeId);\n    if (nodeType?.title) {\n      return titleToSnakeCase(nodeType.title);\n    }\n  }\n  return type;\n}\n\n// Fallback for runtime environments where TELEMETRY_ENABLED is not defined by esbuild\ndeclare const TELEMETRY_ENABLED: boolean | undefined;\nconst isTelemetryEnabled = typeof TELEMETRY_ENABLED !== \"undefined\" ? TELEMETRY_ENABLED : false;\n\n/**\n * Model class representing the complete architecture model\n * Uses GraphModel internally for graph-based storage\n */\nexport class Model {\n  rootPath: string;\n  manifest: Manifest;\n  graph: GraphModel;\n  layers: Map<string, Layer>;\n  relationships: Relationships;\n  lazyLoad: boolean;\n  private loadedLayers: Set<string>;\n  private virtualProjectionEngine?: VirtualProjectionEngine;\n  /** ID of the currently active changeset, or null if none is active. Set during load(). */\n  private _activeChangesetId: string | null = null;\n  /** Layer names that exist only in staged changes (not yet committed to base model). */\n  private _stagedLayerNames: Set<string> = new Set();\n\n  constructor(rootPath: string, manifest: Manifest, options: ModelOptions = {}) {\n    this.rootPath = rootPath;\n    this.manifest = manifest;\n    this.graph = new GraphModel();\n    this.layers = new Map();\n    this.relationships = new Relationships();\n    this.lazyLoad = options.lazyLoad ?? false;\n    this.loadedLayers = new Set();\n  }\n\n  /**\n   * Get the committed base layer (no staging projection).\n   * Used internally by VirtualProjectionEngine and commit() to access the raw base model\n   * without triggering infinite recursion or double-projection.\n   */\n  async getBaseLayer(name: string): Promise<Layer | undefined> {\n    if (this.lazyLoad && !this.loadedLayers.has(name)) {\n      await this.loadLayer(name);\n    }\n    return this.layers.get(name);\n  }\n\n  /**\n   * Get a layer, transparently merging staged changes when an active changeset exists.\n   * Falls back to the committed base layer if no changeset is active or projection fails.\n   */\n  async getLayer(name: string): Promise<Layer | undefined> {\n    if (this.lazyLoad && !this.loadedLayers.has(name)) {\n      await this.loadLayer(name);\n    }\n\n    // If an active changeset is present, return a projected (base + staged) layer\n    if (this._activeChangesetId) {\n      try {\n        return await this.getVirtualProjectionEngine().projectLayer(\n          this,\n          this._activeChangesetId,\n          name\n        );\n      } catch {\n        // Fall back to base layer on projection failure (e.g. corrupt changeset)\n        return this.layers.get(name);\n      }\n    }\n\n    return this.layers.get(name);\n  }\n\n  /**\n   * Get an element by ID across all layers\n   * Supports both UUID and semantic ID (layer.type.kebab-name) lookup\n   */\n  getElementById(id: string): Element | undefined {\n    for (const layer of this.layers.values()) {\n      const element = layer.getElement(id);\n      if (element) {\n        return element;\n      }\n    }\n    return undefined;\n  }\n\n  /**\n   * Get virtual projection engine (lazily initialized)\n   */\n  getVirtualProjectionEngine(): VirtualProjectionEngine {\n    if (!this.virtualProjectionEngine) {\n      this.virtualProjectionEngine = new VirtualProjectionEngine(this.rootPath);\n    }\n    return this.virtualProjectionEngine;\n  }\n\n  /**\n   * Returns the active changeset ID, or null if no changeset is active.\n   * Used by commands that need to project the full model (e.g. validate).\n   */\n  getActiveChangesetId(): string | null {\n    return this._activeChangesetId;\n  }\n\n  /**\n   * Load a layer from disk (model/XX_layername/*.yaml files)\n   */\n  async loadLayer(name: string): Promise<void> {\n    await startActiveSpan(\"layer.load\", async (layerSpan) => {\n      const fs = await import(\"fs/promises\");\n      const yaml = await import(\"yaml\");\n\n      let layerPath: string | null = null;\n\n      // Auto-discover by scanning directory with naming convention\n      const modelDir = `${this.rootPath}/documentation-robotics/model`;\n\n      try {\n        const entries = await fs.readdir(modelDir, { withFileTypes: true });\n        const layerDir = entries.find(\n          (e) =>\n            e.isDirectory() && e.name.match(/^\\d{2}_/) && e.name.replace(/^\\d{2}_/, \"\") === name\n        );\n\n        if (layerDir) {\n          layerPath = `${modelDir}/${layerDir.name}`;\n        }\n      } catch {\n        // Model directory doesn't exist or can't be read\n      }\n\n      if (!layerPath) {\n        return; // Layer directory not found\n      }\n\n      const layer = new Layer(name, this.graph);\n      let parseErrorCount = 0;\n\n      // Load all YAML files in the layer directory\n      const files = await fs.readdir(layerPath);\n      for (const file of files) {\n        if (file.endsWith(\".yaml\") || file.endsWith(\".yml\")) {\n          const filePath = `${layerPath}/${file}`;\n          try {\n            const yamlContent = await fs.readFile(filePath, \"utf-8\");\n            const elements = yaml.parse(yamlContent);\n\n            // Add each element from the YAML file\n            if (elements && typeof elements === \"object\") {\n              for (const [key, element] of Object.entries(elements)) {\n                if (element && typeof element === \"object\") {\n                  const el: any = element;\n\n                  // Derive id, path, and type using the 3-case migration logic:\n                  // Case 1: element already has both id (UUID) and path \u2192 use as-is\n                  // Case 2: element.id looks like a slug (layer.type.name) \u2192 move to path, generate UUID\n                  // Case 3: element has UUID id but no path \u2192 derive path from layer_id.type.kebab(name)\n                  const isSlugPattern = /^[a-z][a-z0-9-]*\\.[a-z][a-z0-9-]*\\.[a-z][a-z0-9-]*$/.test(el.id || \"\");\n                  const isUUIDPattern = /^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(el.id || \"\");\n\n                  let elementId: string;\n                  let elementPath: string;\n                  let extractedType: string | undefined = undefined;\n\n                  if (el.path && isUUIDPattern) {\n                    // Case 1: already has both path and UUID id\n                    elementId = el.id;\n                    elementPath = el.path;\n                    const pathParts = el.path.split(\".\");\n                    if (pathParts.length >= 3) extractedType = pathParts[1];\n                  } else if (el.path && !isUUIDPattern) {\n                    // Has a path but id is not a UUID \u2014 migrate id to deterministic UUID\n                    elementPath = el.path;\n                    elementId = deterministicUUID(el.path);\n                    const pathParts = el.path.split(\".\");\n                    if (pathParts.length >= 3) extractedType = pathParts[1];\n                  } else if (isSlugPattern) {\n                    // Case 2: slug-looking id \u2192 move to path, generate deterministic UUID\n                    elementPath = el.id;\n                    elementId = deterministicUUID(el.id);\n                    const parts = el.id.split(\".\");\n                    if (parts.length >= 3) extractedType = parts[1];\n                  } else if (isUUIDPattern) {\n                    // Case 3: UUID id, no path \u2192 derive path\n                    elementId = el.id;\n                    const layerId = el.layer_id || name;\n                    const rawType = el.type || \"\";\n                    const rawName = el.name || key;\n                    const kebabName = rawName.toLowerCase().replace(/[\\s_]+/g, \"-\").replace(/[^a-z0-9-]/g, \"\").replace(/-+/g, \"-\").replace(/^-+|-+$/g, \"\");\n                    elementPath = `${layerId}.${rawType}.${kebabName}`;\n                    extractedType = rawType || undefined;\n                  } else {\n                    // Fallback: derive a path from available data, generate deterministic UUID\n                    const layerId = el.layer_id || name;\n                    const rawType = el.type || (typeof el.id === \"string\" && el.id.includes(\".\") ? el.id.split(\".\")[1] : \"\") || \"\";\n                    const rawName = el.name || key;\n                    const kebabName = rawName.toLowerCase().replace(/[\\s_]+/g, \"-\").replace(/[^a-z0-9-]/g, \"\").replace(/-+/g, \"-\").replace(/^-+|-+$/g, \"\") || \"unknown\";\n                    elementPath = `${layerId}.${rawType || \"element\"}.${kebabName}`;\n                    elementId = deterministicUUID(elementPath);\n                    if (rawType) extractedType = rawType;\n                    else if (typeof el.id === \"string\" && el.id.includes(\".\")) {\n                      const parts = el.id.split(\".\");\n                      if (parts.length >= 3) extractedType = parts[1];\n                    }\n                  }\n\n                  const elementName = el.name || key;\n                  const elementType = el.type || extractedType;\n                  const layerId = el.layer_id || name;\n\n                  const newElement = new Element({\n                    id: elementId,\n                    path: elementPath,\n                    spec_node_id: el.spec_node_id,\n                    layer_id: layerId,\n                    attributes: el.attributes,\n                    source_reference: el.source_reference,\n                    metadata: el.metadata,\n                    name: elementName,\n                    type: elementType,\n                    description: el.description || \"\",\n                    relationships: el.relationships || [],\n                    references: el.references || [],\n                    layer: layerId,\n                  } as any);\n                  layer.addElement(newElement);\n                }\n              }\n            }\n          } catch (fileError) {\n            // Log YAML parsing errors but continue loading other files\n            const errorMsg = fileError instanceof Error ? fileError.message : String(fileError);\n            console.error(`Warning: Failed to parse ${filePath}: ${errorMsg}`);\n            parseErrorCount++;\n            // Continue with next file\n          }\n        }\n      }\n\n      // If we had parse errors, add a note to the layer\n      if (parseErrorCount > 0) {\n        console.error(\n          `Warning: Layer '${name}' loaded with ${parseErrorCount} YAML parse error(s)`\n        );\n      }\n\n      this.layers.set(name, layer);\n      this.loadedLayers.add(name);\n\n      layerSpan.setAttribute(\"layer.element_count\", layer.elements.size);\n    }, { \"layer.name\": name });\n  }\n\n  /**\n   * Add a layer to the model\n   */\n  addLayer(layer: Layer): void {\n    // If the layer has elements in its isolated graph, migrate them to the model's graph\n    if (layer.graph.getNodeCount() > 0) {\n      for (const node of layer.graph.nodes.values()) {\n        this.graph.addNode(node);\n      }\n      for (const edge of layer.graph.edges.values()) {\n        this.graph.addEdge(edge);\n      }\n    }\n    // Ensure layer uses the model's graph for future operations\n    layer.graph = this.graph;\n    this.layers.set(layer.name, layer);\n    this.loadedLayers.add(layer.name);\n  }\n\n  /**\n   * Get all layer names, including layers that exist only in staged changes.\n   * When an active changeset introduces elements for a layer with no committed data,\n   * that layer name is included so findElementLayer() and other callers can discover it.\n   */\n  getLayerNames(): string[] {\n    const base = Array.from(this.layers.keys());\n    if (this._stagedLayerNames.size === 0) {\n      return base;\n    }\n    // Include staged-only layers (layers that have staged elements but no committed elements)\n    const staged = Array.from(this._stagedLayerNames).filter((l) => !this.layers.has(l));\n    return [...base, ...staged];\n  }\n\n  /**\n   * Save a layer to disk (model/XX_layername/*.yaml)\n   */\n  async saveLayer(name: string): Promise<void> {\n    const layer = this.layers.get(name);\n    if (!layer) {\n      throw new Error(`Layer ${name} not found`);\n    }\n\n    const fs = await import(\"fs/promises\");\n    const yaml = await import(\"yaml\");\n\n    let layerPath: string | null = null;\n\n    // Discover by scanning directory\n    const modelDir = `${this.rootPath}/documentation-robotics/model`;\n\n    try {\n      const entries = await fs.readdir(modelDir, { withFileTypes: true });\n      const layerDir = entries.find(\n        (e) =>\n          e.isDirectory() && e.name.match(/^\\d{2}_/) && e.name.replace(/^\\d{2}_/, \"\") === name\n      );\n\n      if (layerDir) {\n        layerPath = `${modelDir}/${layerDir.name}`;\n      }\n    } catch {\n      // Model directory doesn't exist or can't be read\n    }\n\n    // If still not found, create using default format\n    if (!layerPath) {\n      // Find the order number for this layer\n      // Handle layer names with or without numeric prefix (e.g., \"motivation\" or \"01-motivation\")\n      const layerNameWithoutPrefix = name.replace(/^\\d{2}-/, \"\");\n      const index = CANONICAL_LAYER_NAMES.indexOf(layerNameWithoutPrefix as typeof CANONICAL_LAYER_NAMES[number]);\n      if (index >= 0) {\n        const orderNum = String(index + 1).padStart(2, \"0\");\n        layerPath = `${this.rootPath}/documentation-robotics/model/${orderNum}_${layerNameWithoutPrefix}`;\n        await ensureDir(layerPath);\n      } else {\n        throw new Error(`Unknown layer ${name} and no path configured in manifest`);\n      }\n    }\n\n    // Delete all existing YAML files in the layer directory to ensure\n    // we don't keep stale files after element deletion\n    try {\n      const existingFiles = await fs.readdir(layerPath);\n      for (const file of existingFiles) {\n        if (file.endsWith(\".yaml\") || file.endsWith(\".yml\")) {\n          await fs.unlink(`${layerPath}/${file}`);\n        }\n      }\n    } catch (err) {\n      // Only ignore \"directory not found\" errors \u2014 re-throw permission/I/O errors\n      const isNotFoundError = (err as any)?.code === \"ENOENT\";\n      if (!isNotFoundError) {\n        throw new Error(\n          `Failed to clean existing YAML files: ${err instanceof Error ? err.message : String(err)}`\n        );\n      }\n    }\n\n    // Group elements by type, computing the snake_case file stem from the spec node title\n    const elementsByType = new Map<string, { stem: string; elements: Element[] }>();\n    for (const element of layer.elements.values()) {\n      const typeKey = element.type;\n      if (!elementsByType.has(typeKey)) {\n        const stem = typeToSnakeStem(element.spec_node_id, element.type);\n        elementsByType.set(typeKey, { stem, elements: [] });\n      }\n      elementsByType.get(typeKey)!.elements.push(element);\n    }\n\n    // Internal graph fields \u2014 never written to YAML\n    const INTERNAL_FIELDS = new Set([\n      \"__references__\", \"__relationships__\",\n      \"source\", \"x-source-reference\",\n    ]);\n\n    // Write each type to its own YAML file\n    for (const [, { stem, elements }] of elementsByType) {\n      const filename = `${stem}.yaml`;\n      const filePath = `${layerPath}/${filename}`;\n\n      // Convert elements to spec-node format YAML\n      const yamlData: any = {};\n      for (const element of elements) {\n        const json = element.toJSON();\n\n        // Clean attributes: remove graph-internal keys that should not be persisted\n        const cleanAttrs = json.attributes\n          ? Object.fromEntries(\n              Object.entries(json.attributes).filter(([k]) => !INTERNAL_FIELDS.has(k))\n            )\n          : undefined;\n\n        // Use path as YAML key (human-readable); fall back to id for elements without path\n        const key = element.path || element.id;\n        yamlData[key] = {\n          id: json.id,\n          path: json.path,\n          spec_node_id: json.spec_node_id,\n          type: json.type,\n          layer_id: json.layer_id,\n          name: json.name,\n          ...(json.description && { description: json.description }),\n          ...(cleanAttrs && Object.keys(cleanAttrs).length > 0 && { attributes: cleanAttrs }),\n          ...(json.source_reference && { source_reference: json.source_reference }),\n          ...(json.metadata && { metadata: json.metadata }),\n          ...(json.references && json.references.length > 0 && { references: json.references }),\n          // Relationships are now stored in centralized relationships.yaml, not inline\n        };\n      }\n\n      await writeFile(filePath, yaml.stringify(yamlData));\n    }\n\n    layer.markClean();\n  }\n\n  /**\n   * Save model (saves all dirty layers and manifest)\n   */\n  async save(): Promise<void> {\n    await this.saveDirtyLayers();\n    await this.saveManifest();\n  }\n\n  /**\n   * Save all dirty layers to disk\n   */\n  async saveDirtyLayers(): Promise<void> {\n    // Count dirty layers before operation\n    let dirtyLayerCount = 0;\n    for (const layer of this.layers.values()) {\n      if (layer.isDirty()) {\n        dirtyLayerCount++;\n      }\n    }\n\n    const span = isTelemetryEnabled\n      ? startSpan(\"model.save\", {\n          \"model.path\": this.rootPath,\n          \"model.dirty_layer_count\": dirtyLayerCount,\n        })\n      : null;\n\n    try {\n      for (const layer of this.layers.values()) {\n        if (layer.isDirty()) {\n          await this.saveLayer(layer.name);\n        }\n      }\n    } finally {\n      if (isTelemetryEnabled) {\n        endSpan(span);\n      }\n    }\n  }\n\n  /**\n   * Save the manifest to disk (documentation-robotics/model/manifest.yaml)\n   */\n  async saveManifest(): Promise<void> {\n    this.manifest.updateModified();\n    const yaml = await import(\"yaml\");\n    const manifestPath = `${this.rootPath}/documentation-robotics/model/manifest.yaml`;\n\n    // Convert to YAML format\n    const yamlData: any = {\n      version: this.manifest.version,\n      schema: \"documentation-robotics-v1\",\n      cli_version: getCliVersion(),\n      spec_version: this.manifest.specVersion,\n      created: this.manifest.created,\n      updated: this.manifest.modified,\n      project: {\n        name: this.manifest.name,\n        description: this.manifest.description,\n        version: this.manifest.version,\n      },\n      documentation: \".dr/README.md\",\n      layers: {},\n    };\n\n    // Generate layer structure from current model state\n    const layerOrder = [\n      \"motivation\",\n      \"business\",\n      \"security\",\n      \"application\",\n      \"technology\",\n      \"api\",\n      \"data-model\",\n      \"data-store\",\n      \"ux\",\n      \"navigation\",\n      \"apm\",\n      \"testing\",\n    ];\n\n    for (let i = 0; i < layerOrder.length; i++) {\n      const layerName = layerOrder[i];\n      const layer = this.layers.get(layerName);\n      const orderNum = String(i + 1).padStart(2, \"0\");\n\n      yamlData.layers[layerName] = {\n        order: i + 1,\n        name: layerName.charAt(0).toUpperCase() + layerName.slice(1).replace(\"-\", \" \"),\n        path: `documentation-robotics/model/${orderNum}_${layerName}/`,\n        enabled: true,\n        ...(layer && { elements: this.getLayerElementCounts(layer) }),\n      };\n    }\n\n    if (this.manifest.changeset_history && this.manifest.changeset_history.length > 0) {\n      yamlData.changeset_history = this.manifest.changeset_history;\n    }\n\n    await ensureDir(`${this.rootPath}/documentation-robotics/model`);\n    await writeFile(manifestPath, yaml.stringify(yamlData));\n  }\n\n  private getLayerElementCounts(layer: Layer): Record<string, number> {\n    const counts: Record<string, number> = {};\n    for (const element of layer.elements.values()) {\n      counts[element.type] = (counts[element.type] || 0) + 1;\n    }\n    return counts;\n  }\n\n  /**\n   * Load relationships from relationships.yaml\n   */\n  async loadRelationships(): Promise<void> {\n    const fs = await import(\"fs/promises\");\n    const yaml = await import(\"yaml\");\n    const relationshipsPath = `${this.rootPath}/documentation-robotics/model/relationships.yaml`;\n\n    let data: any;\n    try {\n      const yamlContent = await fs.readFile(relationshipsPath, \"utf-8\");\n      data = yaml.parse(yamlContent);\n    } catch (err) {\n      // If file doesn't exist, that's okay - start with empty relationships\n      if ((err as any).code !== \"ENOENT\") {\n        // But if it's a different error (YAML parse, permission denied, etc), throw it\n        // so the caller knows about the issue\n        throw new Error(\n          `Failed to load relationships.yaml: ${err instanceof Error ? err.message : String(err)}`\n        );\n      }\n      // ENOENT: file doesn't exist, return with empty relationships\n      return;\n    }\n\n    // Validate that parsed content is an array\n    if (!Array.isArray(data)) {\n      const typeLabel = data === null ? \"null\" : typeof data;\n      console.warn(\n        `Warning: relationships.yaml contains non-array content (received ${typeLabel}). Expected an array of relationships. Skipping relationship loading.`\n      );\n      return;\n    }\n\n    this.relationships = Relationships.fromArray(data);\n    // Sync relationships to graph as a secondary in-memory index.\n    // addEdge() may throw if nodes from other layers haven't been loaded yet;\n    // failures are silently skipped \u2014 this.relationships holds the primary data.\n    for (let i = 0; i < data.length; i++) {\n      const rel = data[i];\n      const edge: GraphEdge = {\n        id: `rel-${i}-${crypto.randomBytes(4).toString(\"hex\")}`,\n        source: rel.source,\n        destination: rel.target,\n        predicate: rel.predicate,\n        properties: rel.properties,\n        category: rel.category,\n      };\n      try {\n        this.graph.addEdge(edge);\n      } catch {\n        // Silently skip edges whose nodes haven't been loaded yet.\n        // The primary relationship data lives in this.relationships; the graph\n        // is a secondary index. Cross-layer relationships referencing nodes from\n        // unloaded layers are expected during partial model construction.\n      }\n    }\n  }\n\n  /**\n   * Save relationships to relationships.yaml\n   */\n  async saveRelationships(): Promise<void> {\n    const fs = await import(\"fs/promises\");\n    const yaml = await import(\"yaml\");\n    const relationshipsPath = `${this.rootPath}/documentation-robotics/model/relationships.yaml`;\n\n    await ensureDir(`${this.rootPath}/documentation-robotics/model`);\n\n    const data = this.relationships.toArray();\n\n    // Add header comment with timestamp to ensure file always changes\n    const timestamp = new Date().toISOString();\n    const header = `# Intra-layer relationships\n# Format: source_id -> predicate -> target_id\n# Last updated: ${timestamp}\n\n`;\n    const yamlContent = header + yaml.stringify(data);\n\n    await fs.writeFile(relationshipsPath, yamlContent, \"utf-8\");\n    this.relationships.markClean();\n  }\n\n  /**\n   * Resolve model paths (private helper)\n   *\n   * @param startPath - Starting path for search\n   * @returns Project root and manifest path\n   */\n  private static async resolveModelPaths(startPath?: string): Promise<{\n    projectRoot: string;\n    manifestPath: string;\n  }> {\n    const searchPath = startPath || process.cwd();\n\n    // Optional override via env var (highest priority)\n    if (process.env.DR_MODEL_PATH) {\n      const envPath = path.resolve(process.env.DR_MODEL_PATH);\n      let manifestPath: string;\n\n      if (envPath.endsWith(\"manifest.yaml\")) {\n        manifestPath = envPath;\n      } else if (envPath.endsWith(\"model\")) {\n        manifestPath = path.join(envPath, \"manifest.yaml\");\n      } else {\n        manifestPath = path.join(envPath, \"documentation-robotics\", \"model\", \"manifest.yaml\");\n      }\n\n      try {\n        await fs.access(manifestPath);\n        const projectRoot = path.dirname(path.dirname(path.dirname(manifestPath)));\n        return { projectRoot, manifestPath: path.normalize(manifestPath) };\n      } catch {\n        throw new Error(`Model not found at DR_MODEL_PATH: ${process.env.DR_MODEL_PATH}`);\n      }\n    }\n\n    // Use findProjectRoot to locate documentation_robotics/ folder\n    const projectRoot = await findProjectRoot(searchPath);\n\n    if (!projectRoot) {\n      throw new Error(\n        \"No DR project found. Could not find documentation_robotics/ folder.\\n\" +\n          'Run \"dr init\" to create a new project, or navigate to a directory containing a DR project.'\n      );\n    }\n\n    const manifestPath = path.join(projectRoot, \"documentation-robotics\", \"model\", \"manifest.yaml\");\n\n    try {\n      await fs.access(manifestPath);\n      return { projectRoot, manifestPath };\n    } catch {\n      throw new Error(\n        `Found documentation_robotics/ at ${projectRoot} but no model found. ` +\n          `Expected: ${manifestPath}\\n` +\n          `Run \"dr init\" to create a model.`\n      );\n    }\n  }\n\n  /**\n   * Load a model from disk\n   *\n   * Expected structure:\n   * <project-root>/\n   * \u2514\u2500\u2500 documentation_robotics/\n   *     \u2514\u2500\u2500 model/\n   *         \u2514\u2500\u2500 manifest.yaml\n   *\n   * @param startPath - Starting path for project search (defaults to process.cwd())\n   * @param options - Model loading options\n   * @returns Loaded Model instance\n   */\n  static async load(startPath?: string, options: ModelOptions = {}): Promise<Model> {\n    return startActiveSpan(\"model.load\", async (span) => {\n      // Resolve project root and manifest path\n      const { projectRoot, manifestPath } = await Model.resolveModelPaths(startPath);\n\n      const yaml = await import(\"yaml\");\n\n      // Load manifest from resolved path\n      const yamlContent = await fs.readFile(manifestPath, \"utf-8\");\n      const manifestYaml = yaml.parse(yamlContent);\n\n      // Convert manifest to internal format\n      const manifestData: any = {\n        name: manifestYaml.project?.name || \"Unnamed Model\",\n        description: manifestYaml.project?.description || \"\",\n        version: manifestYaml.project?.version || manifestYaml.version || \"0.1.0\",\n        specVersion: manifestYaml.spec_version || \"0.6.0\",\n        created: manifestYaml.created || new Date().toISOString(),\n        modified: manifestYaml.updated || new Date().toISOString(),\n      };\n      const manifest = new Manifest(manifestData);\n      const model = new Model(projectRoot, manifest, options);\n\n      // Load all available layers if lazyLoad is false\n      if (!options.lazyLoad) {\n        try {\n          // If manifest has layer definitions, use those\n          if (manifestYaml.layers) {\n            for (const layerName of Object.keys(manifestYaml.layers)) {\n              const layerConfig = manifestYaml.layers[layerName];\n              if (layerConfig.enabled !== false) {\n                if (!options.layers || options.layers.includes(layerName)) {\n                  await model.loadLayer(layerName);\n                }\n              }\n            }\n          } else {\n            // Otherwise scan for layer directories\n            const modelDir = manifestPath.replace(\"/manifest.yaml\", \"\");\n            const entries = await fs.readdir(modelDir, { withFileTypes: true });\n\n            for (const entry of entries) {\n              if (entry.isDirectory() && entry.name.match(/^\\d{2}_/)) {\n                const layerName = entry.name.replace(/^\\d{2}_/, \"\");\n                if (!options.layers || options.layers.includes(layerName)) {\n                  await model.loadLayer(layerName);\n                }\n              }\n            }\n          }\n        } catch (e) {\n          // Check if this is a \"directory not found\" error (expected case)\n          const isNotFoundError = (e as any)?.code === \"ENOENT\";\n          if (!isNotFoundError) {\n            // Re-throw non-ENOENT errors: permission errors, YAML parsing failures, I/O errors, etc.\n            throw new Error(\n              `Failed to load layers: ${e instanceof Error ? e.message : String(e)}`\n            );\n          }\n          // ENOENT is expected if layer directory doesn't exist yet, so just continue\n        }\n      }\n\n      // Load relationships from relationships.yaml\n      await model.loadRelationships();\n\n      // Check for active changeset and pre-load staged metadata for transparent projection.\n      // This enables getLayer() to return projected views and getLayerNames() to include\n      // layers that exist only in staged changes.\n      const activePath = path.join(\n        projectRoot,\n        \"documentation-robotics\",\n        \"changesets\",\n        \".active\"\n      );\n      try {\n        const activeContent = await fs.readFile(activePath, \"utf-8\");\n        const activeId = activeContent.trim();\n        if (activeId) {\n          model._activeChangesetId = activeId;\n          const storage = new StagedChangesetStorage(projectRoot);\n          const changeset = await storage.load(activeId);\n          if (changeset) {\n            for (const change of changeset.changes as StagedChange[]) {\n              // Track layer names for getLayerNames()\n              if (\n                change.type === \"add\" ||\n                change.type === \"update\" ||\n                change.type === \"delete\"\n              ) {\n                model._stagedLayerNames.add(change.layerName);\n              }\n\n              // Inject staged relationship-adds into model.relationships so that\n              // read commands (list, show, export) transparently see staged relationships.\n              if (change.type === \"relationship-add\" && change.after) {\n                const rel = change.after as {\n                  source: string;\n                  target: string;\n                  predicate: string;\n                  layer: string;\n                  targetLayer?: string;\n                  category?: \"structural\" | \"behavioral\";\n                  properties?: Record<string, unknown>;\n                };\n                // Only inject if not already in relationships.yaml (prevents duplicates\n                // if .active file is stale after a partial commit or manual edit).\n                const alreadyPresent = model.relationships.find(\n                  rel.source,\n                  rel.target,\n                  rel.predicate\n                );\n                if (alreadyPresent.length === 0) {\n                  model.relationships.add({\n                    source: rel.source,\n                    target: rel.target,\n                    predicate: rel.predicate,\n                    layer: rel.layer,\n                    ...(rel.targetLayer ? { targetLayer: rel.targetLayer } : {}),\n                    category: rel.category ?? \"structural\",\n                    ...(rel.properties ? { properties: rel.properties } : {}),\n                  });\n                }\n              }\n\n              // Remove staged relationship-deletes from model.relationships so that\n              // read commands see the relationship as already deleted.\n              if (change.type === \"relationship-delete\" && change.before) {\n                const rel = change.before as {\n                  source: string;\n                  target: string;\n                  predicate?: string;\n                };\n                model.relationships.delete(rel.source, rel.target, rel.predicate);\n              }\n            }\n          }\n        }\n      } catch {\n        // No active changeset or unreadable \u2014 proceed with base model only\n        model._activeChangesetId = null;\n      }\n\n      // Count total entities across all layers\n      let entityCount = 0;\n      for (const layer of model.layers.values()) {\n        entityCount += layer.elements.size;\n      }\n\n      span.setAttribute(\"model.entity_count\", entityCount);\n      span.setAttribute(\"model.layer_count\", model.layers.size);\n\n      return model;\n    }, {\n      \"model.path\": startPath || process.cwd(),\n      \"model.type\": \"dr\",\n    });\n  }\n\n  /**\n   * Initialize a new model in a directory\n   */\n  static async init(\n    rootPath: string,\n    manifestData: ManifestData,\n    options: ModelOptions = {}\n  ): Promise<Model> {\n    // Create model directory structure\n    await ensureDir(`${rootPath}/documentation-robotics/model`);\n\n    for (let i = 0; i < CANONICAL_LAYER_NAMES.length; i++) {\n      const orderNum = String(i + 1).padStart(2, \"0\");\n      const layerName = CANONICAL_LAYER_NAMES[i];\n      await ensureDir(`${rootPath}/documentation-robotics/model/${orderNum}_${layerName}`);\n    }\n\n    const manifest = new Manifest(manifestData);\n    const model = new Model(rootPath, manifest, options);\n\n    await model.saveManifest();\n\n    return model;\n  }\n\n  /**\n   * Graph-based API methods for querying the model\n   * These methods delegate to the underlying GraphModel for efficient queries\n   */\n\n  /**\n   * Get a node by its UUID\n   */\n  getNode(id: string) {\n    return this.graph.getNode(id);\n  }\n\n  /**\n   * Get all nodes in a specific layer\n   */\n  getNodesByLayer(layerId: string) {\n    return this.graph.getNodesByLayer(layerId);\n  }\n\n  /**\n   * Get all nodes of a specific type\n   */\n  getNodesByType(type: string) {\n    return this.graph.getNodesByType(type);\n  }\n\n  /**\n   * Get all edges (relationships) in the model\n   */\n  getAllEdges() {\n    return this.graph.getAllEdges();\n  }\n\n  /**\n   * Get edges originating from a specific node\n   */\n  getEdgesFrom(nodeId: string, predicate?: string) {\n    return this.graph.getEdgesFrom(nodeId, predicate);\n  }\n\n  /**\n   * Get edges terminating at a specific node\n   */\n  getEdgesTo(nodeId: string, predicate?: string) {\n    return this.graph.getEdgesTo(nodeId, predicate);\n  }\n\n  /**\n   * Get edges between two specific nodes\n   */\n  getEdgesBetween(sourceId: string, destinationId: string, predicate?: string) {\n    return this.graph.getEdgesBetween(sourceId, destinationId, predicate);\n  }\n\n  /**\n   * Traverse the graph starting from a node, following a specific predicate\n   */\n  async traverse(startNodeId: string, predicate: string, maxDepth: number = 10) {\n    return this.graph.traverse(startNodeId, predicate, maxDepth);\n  }\n\n  /**\n   * Create a backup of the current model state\n   * Used for rollback support in migration operations\n   *\n   * @param label Descriptive label for the backup (e.g., \"pre-migration\")\n   * @returns Path to the backup directory\n   */\n  async createBackup(label: string): Promise<string> {\n    const timestamp = new Date().toISOString().replace(/[:.]/g, \"-\");\n    const backupDir = path.join(this.rootPath, \".dr-backups\", `${label}-${timestamp}`);\n\n    // Create backup directory\n    await ensureDir(backupDir);\n\n    // Backup layers directory\n    const layersSource = path.join(this.rootPath, \"documentation-robotics\", \"model\");\n    const layersBackup = path.join(backupDir, \"layers\");\n    if (await this.directoryExists(layersSource)) {\n      await this.copyDirectory(layersSource, layersBackup);\n    }\n\n    // Backup manifest\n    const manifestSource = path.join(this.rootPath, \"documentation-robotics\", \"model\", \"manifest.yaml\");\n    const manifestBackup = path.join(backupDir, \"manifest.yaml\");\n    if (await this.fileExists(manifestSource)) {\n      await fs.copyFile(manifestSource, manifestBackup);\n    }\n\n    return backupDir;\n  }\n\n  /**\n   * Restore model from a backup directory\n   * Used for rollback after failed migrations\n   *\n   * @param backupPath Path to the backup directory\n   */\n  async restoreFromBackup(backupPath: string): Promise<void> {\n    // Restore layers\n    const layersBackup = path.join(backupPath, \"layers\");\n    const layersTarget = path.join(this.rootPath, \"documentation-robotics\", \"model\");\n    if (await this.directoryExists(layersBackup)) {\n      await this.copyDirectory(layersBackup, layersTarget);\n    }\n\n    // Restore manifest\n    const manifestBackup = path.join(backupPath, \"manifest.yaml\");\n    const manifestTarget = path.join(this.rootPath, \"documentation-robotics\", \"model\", \"manifest.yaml\");\n    if (await this.fileExists(manifestBackup)) {\n      await fs.copyFile(manifestBackup, manifestTarget);\n    }\n\n    // Reload model to refresh in-memory state\n    const reloadedModel = await Model.load(this.rootPath, { lazyLoad: this.lazyLoad });\n    this.layers = reloadedModel.layers;\n    this.manifest = reloadedModel.manifest;\n    this.graph = reloadedModel.graph;\n    this.relationships = reloadedModel.relationships;\n  }\n\n  /**\n   * Save dirty layers with atomic write semantics\n   * Writes to temporary file first, then renames on success to ensure data safety\n   *\n   * @throws Error if atomic write fails\n   */\n  async saveDirtyLayersAtomic(): Promise<void> {\n    // First, save all layers to temporary files\n    const tempLayerWrites: Array<{ layer: Layer; tempPath: string }> = [];\n\n    try {\n      for (const layer of this.layers.values()) {\n        if (layer.isDirty()) {\n          const layerPath = path.join(\n            this.rootPath,\n            \"documentation-robotics\",\n            \"model\",\n            `${layer.name}_layer`\n          );\n\n          const tempPath = `${layerPath}.tmp`;\n          await ensureDir(tempPath);\n\n          // Write layer elements to temp directory\n          for (const element of layer.elements.values()) {\n            const elementPath = path.join(tempPath, `${element.path || element.id}.json`);\n            const content = JSON.stringify(element.toJSON(), null, 2);\n            await writeFile(elementPath, content);\n          }\n\n          tempLayerWrites.push({ layer, tempPath });\n        }\n      }\n\n      // All temp writes succeeded, now commit by renaming\n      for (const { layer, tempPath } of tempLayerWrites) {\n        const layerPath = path.join(\n          this.rootPath,\n          \"documentation-robotics\",\n          \"model\",\n          `${layer.name}_layer`\n        );\n\n        // Remove old directory and rename temp to actual\n        if (await this.directoryExists(layerPath)) {\n          await fs.rm(layerPath, { recursive: true, force: true });\n        }\n        await fs.rename(tempPath, layerPath);\n      }\n    } catch (error) {\n      // Cleanup any temp directories on failure\n      for (const { tempPath } of tempLayerWrites) {\n        if (await this.directoryExists(tempPath)) {\n          await fs.rm(tempPath, { recursive: true, force: true });\n        }\n      }\n      throw error;\n    }\n  }\n\n  /**\n   * Helper: Check if file exists\n   */\n  private async fileExists(filePath: string): Promise<boolean> {\n    try {\n      await fs.access(filePath);\n      return true;\n    } catch {\n      return false;\n    }\n  }\n\n  /**\n   * Helper: Check if directory exists\n   */\n  private async directoryExists(dirPath: string): Promise<boolean> {\n    try {\n      const stat = await fs.stat(dirPath);\n      return stat.isDirectory();\n    } catch {\n      return false;\n    }\n  }\n\n  /**\n   * Helper: Recursively copy directory\n   */\n  private async copyDirectory(src: string, dest: string): Promise<void> {\n    await ensureDir(dest);\n    const entries = await fs.readdir(src, { withFileTypes: true });\n\n    for (const entry of entries) {\n      const srcPath = path.join(src, entry.name);\n      const destPath = path.join(dest, entry.name);\n\n      if (entry.isDirectory()) {\n        await this.copyDirectory(srcPath, destPath);\n      } else {\n        await fs.copyFile(srcPath, destPath);\n      }\n    }\n  }\n}\n"],
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+  "sourcesContent": ["import { Layer } from \"./layer.js\";\nimport { Manifest } from \"./manifest.js\";\nimport { Element } from \"./element.js\";\nimport { GraphModel, type GraphEdge } from \"./graph-model.js\";\nimport { VirtualProjectionEngine } from \"./virtual-projection.js\";\nimport { StagedChangesetStorage } from \"./staged-changeset-storage.js\";\nimport { Relationships } from \"./relationships.js\";\nimport { CANONICAL_LAYER_NAMES } from \"./layers.js\";\nimport type { StagedChange } from \"./changeset.js\";\nimport { ensureDir, writeFile } from \"../utils/file-io.js\";\nimport { getCliVersion } from \"../utils/spec-version.js\";\nimport { startSpan, endSpan, startActiveSpan } from \"../telemetry/index.js\";\nimport { findProjectRoot } from \"../utils/project-paths.js\";\nimport { getNodeType } from \"../generated/node-types.js\";\nimport type { SpecNodeId } from \"../generated/node-types.js\";\nimport type { ManifestData, ModelOptions } from \"../types/index.js\";\nimport path from \"node:path\";\nimport fs from \"node:fs/promises\";\nimport crypto from \"node:crypto\";\n\n/**\n * Derive a deterministic UUID from a path string using SHA-256.\n * Produces a stable UUID4-like value so migration doesn't regenerate UUIDs on every load.\n */\nfunction deterministicUUID(path: string): string {\n  const hash = crypto.createHash(\"sha256\").update(path).digest(\"hex\");\n  return [\n    hash.slice(0, 8),\n    hash.slice(8, 12),\n    \"4\" + hash.slice(13, 16), // version 4 marker\n    ((parseInt(hash.slice(16, 18), 16) & 0x3f) | 0x80).toString(16) + hash.slice(18, 20), // variant\n    hash.slice(20, 32),\n  ].join(\"-\");\n}\n\n/**\n * Convert a PascalCase title to snake_case.\n * Handles acronyms correctly: \"UXApplication\" \u2192 \"ux_application\", \"OpenAPIDocument\" \u2192 \"open_api_document\".\n */\nfunction titleToSnakeCase(title: string): string {\n  return title\n    .replace(/([A-Z]+)([A-Z][a-z])/g, \"$1_$2\") // \"APIDoc\" \u2192 \"API_Doc\"\n    .replace(/([a-z\\d])([A-Z])/g, \"$1_$2\")       // \"appComponent\" \u2192 \"app_Component\"\n    .toLowerCase();\n}\n\n/**\n * Derive a snake_case file stem for a given element type.\n * Uses the spec node title for accurate word boundaries (e.g., \"InputSpacePartition\" \u2192 \"input_space_partition\").\n * Falls back to the raw type string when the title is unavailable.\n */\nfunction typeToSnakeStem(specNodeId: string | undefined, type: string): string {\n  if (specNodeId) {\n    const nodeType = getNodeType(specNodeId as SpecNodeId);\n    if (nodeType?.title) {\n      return titleToSnakeCase(nodeType.title);\n    }\n  }\n  return type;\n}\n\n// Fallback for runtime environments where TELEMETRY_ENABLED is not defined by esbuild\ndeclare const TELEMETRY_ENABLED: boolean | undefined;\nconst isTelemetryEnabled = typeof TELEMETRY_ENABLED !== \"undefined\" ? TELEMETRY_ENABLED : false;\n\n/**\n * Model class representing the complete architecture model\n * Uses GraphModel internally for graph-based storage\n */\nexport class Model {\n  rootPath: string;\n  manifest: Manifest;\n  graph: GraphModel;\n  layers: Map<string, Layer>;\n  relationships: Relationships;\n  lazyLoad: boolean;\n  private loadedLayers: Set<string>;\n  private virtualProjectionEngine?: VirtualProjectionEngine;\n  /** ID of the currently active changeset, or null if none is active. Set during load(). */\n  private _activeChangesetId: string | null = null;\n  /** Layer names that exist only in staged changes (not yet committed to base model). */\n  private _stagedLayerNames: Set<string> = new Set();\n\n  constructor(rootPath: string, manifest: Manifest, options: ModelOptions = {}) {\n    this.rootPath = rootPath;\n    this.manifest = manifest;\n    this.graph = new GraphModel();\n    this.layers = new Map();\n    this.relationships = new Relationships();\n    this.lazyLoad = options.lazyLoad ?? false;\n    this.loadedLayers = new Set();\n  }\n\n  /**\n   * Get the committed base layer (no staging projection).\n   * Used internally by VirtualProjectionEngine and commit() to access the raw base model\n   * without triggering infinite recursion or double-projection.\n   */\n  async getBaseLayer(name: string): Promise<Layer | undefined> {\n    if (this.lazyLoad && !this.loadedLayers.has(name)) {\n      await this.loadLayer(name);\n    }\n    return this.layers.get(name);\n  }\n\n  /**\n   * Get a layer, transparently merging staged changes when an active changeset exists.\n   * Falls back to the committed base layer if no changeset is active or projection fails.\n   */\n  async getLayer(name: string): Promise<Layer | undefined> {\n    if (this.lazyLoad && !this.loadedLayers.has(name)) {\n      await this.loadLayer(name);\n    }\n\n    // If an active changeset is present, return a projected (base + staged) layer\n    if (this._activeChangesetId) {\n      try {\n        return await this.getVirtualProjectionEngine().projectLayer(\n          this,\n          this._activeChangesetId,\n          name\n        );\n      } catch {\n        // Fall back to base layer on projection failure (e.g. corrupt changeset)\n        return this.layers.get(name);\n      }\n    }\n\n    return this.layers.get(name);\n  }\n\n  /**\n   * Get an element by ID across all layers\n   * Supports both UUID and semantic ID (layer.type.kebab-name) lookup\n   */\n  getElementById(id: string): Element | undefined {\n    for (const layer of this.layers.values()) {\n      const element = layer.getElement(id);\n      if (element) {\n        return element;\n      }\n    }\n    return undefined;\n  }\n\n  /**\n   * Get virtual projection engine (lazily initialized)\n   */\n  getVirtualProjectionEngine(): VirtualProjectionEngine {\n    if (!this.virtualProjectionEngine) {\n      this.virtualProjectionEngine = new VirtualProjectionEngine(this.rootPath);\n    }\n    return this.virtualProjectionEngine;\n  }\n\n  /**\n   * Returns the active changeset ID, or null if no changeset is active.\n   * Used by commands that need to project the full model (e.g. validate).\n   */\n  getActiveChangesetId(): string | null {\n    return this._activeChangesetId;\n  }\n\n  /**\n   * Load a layer from disk (model/XX_layername/*.yaml files)\n   */\n  async loadLayer(name: string): Promise<void> {\n    await startActiveSpan(\"layer.load\", async (layerSpan) => {\n      const fs = await import(\"fs/promises\");\n      const yaml = await import(\"yaml\");\n\n      let layerPath: string | null = null;\n\n      // Auto-discover by scanning directory with naming convention\n      const modelDir = `${this.rootPath}/documentation-robotics/model`;\n\n      try {\n        const entries = await fs.readdir(modelDir, { withFileTypes: true });\n        const layerDir = entries.find(\n          (e) =>\n            e.isDirectory() && e.name.match(/^\\d{2}_/) && e.name.replace(/^\\d{2}_/, \"\") === name\n        );\n\n        if (layerDir) {\n          layerPath = `${modelDir}/${layerDir.name}`;\n        }\n      } catch {\n        // Model directory doesn't exist or can't be read\n      }\n\n      if (!layerPath) {\n        return; // Layer directory not found\n      }\n\n      const layer = new Layer(name, this.graph);\n      let parseErrorCount = 0;\n\n      // Load all YAML files in the layer directory\n      const files = await fs.readdir(layerPath);\n      for (const file of files) {\n        if (file.endsWith(\".yaml\") || file.endsWith(\".yml\")) {\n          const filePath = `${layerPath}/${file}`;\n          try {\n            const yamlContent = await fs.readFile(filePath, \"utf-8\");\n            const elements = yaml.parse(yamlContent);\n\n            // Add each element from the YAML file\n            if (elements && typeof elements === \"object\") {\n              for (const [key, element] of Object.entries(elements)) {\n                if (element && typeof element === \"object\") {\n                  const el: any = element;\n\n                  // Derive id, path, and type using the 3-case migration logic:\n                  // Case 1: element already has both id (UUID) and path \u2192 use as-is\n                  // Case 2: element.id looks like a slug (layer.type.name) \u2192 move to path, generate UUID\n                  // Case 3: element has UUID id but no path \u2192 derive path from layer_id.type.kebab(name)\n                  const isSlugPattern = /^[a-z][a-z0-9-]*\\.[a-z][a-z0-9-]*\\.[a-z][a-z0-9-]*$/.test(el.id || \"\");\n                  const isUUIDPattern = /^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(el.id || \"\");\n\n                  let elementId: string;\n                  let elementPath: string;\n                  let extractedType: string | undefined = undefined;\n\n                  if (el.path && isUUIDPattern) {\n                    // Case 1: already has both path and UUID id\n                    elementId = el.id;\n                    elementPath = el.path;\n                    const pathParts = el.path.split(\".\");\n                    if (pathParts.length >= 3) extractedType = pathParts[1];\n                  } else if (el.path && !isUUIDPattern) {\n                    // Has a path but id is not a UUID \u2014 migrate id to deterministic UUID\n                    elementPath = el.path;\n                    elementId = deterministicUUID(el.path);\n                    const pathParts = el.path.split(\".\");\n                    if (pathParts.length >= 3) extractedType = pathParts[1];\n                  } else if (isSlugPattern) {\n                    // Case 2: slug-looking id \u2192 move to path, generate deterministic UUID\n                    elementPath = el.id;\n                    elementId = deterministicUUID(el.id);\n                    const parts = el.id.split(\".\");\n                    if (parts.length >= 3) extractedType = parts[1];\n                  } else if (isUUIDPattern) {\n                    // Case 3: UUID id, no path \u2192 derive path\n                    elementId = el.id;\n                    const layerId = el.layer_id || name;\n                    const rawType = el.type || \"\";\n                    const rawName = el.name || key;\n                    const kebabName = rawName.toLowerCase().replace(/[\\s_]+/g, \"-\").replace(/[^a-z0-9-]/g, \"\").replace(/-+/g, \"-\").replace(/^-+|-+$/g, \"\");\n                    elementPath = `${layerId}.${rawType}.${kebabName}`;\n                    extractedType = rawType || undefined;\n                  } else {\n                    // Fallback: derive a path from available data, generate deterministic UUID\n                    const layerId = el.layer_id || name;\n                    const rawType = el.type || (typeof el.id === \"string\" && el.id.includes(\".\") ? el.id.split(\".\")[1] : \"\") || \"\";\n                    const rawName = el.name || key;\n                    const kebabName = rawName.toLowerCase().replace(/[\\s_]+/g, \"-\").replace(/[^a-z0-9-]/g, \"\").replace(/-+/g, \"-\").replace(/^-+|-+$/g, \"\") || \"unknown\";\n                    elementPath = `${layerId}.${rawType || \"element\"}.${kebabName}`;\n                    elementId = deterministicUUID(elementPath);\n                    if (rawType) extractedType = rawType;\n                    else if (typeof el.id === \"string\" && el.id.includes(\".\")) {\n                      const parts = el.id.split(\".\");\n                      if (parts.length >= 3) extractedType = parts[1];\n                    }\n                  }\n\n                  const elementName = el.name || key;\n                  const elementType = el.type || extractedType;\n                  const layerId = el.layer_id || name;\n\n                  const newElement = new Element({\n                    id: elementId,\n                    path: elementPath,\n                    spec_node_id: el.spec_node_id,\n                    layer_id: layerId,\n                    attributes: el.attributes,\n                    source_reference: el.source_reference,\n                    metadata: el.metadata,\n                    name: elementName,\n                    type: elementType,\n                    description: el.description || \"\",\n                    relationships: el.relationships || [],\n                    references: el.references || [],\n                    layer: layerId,\n                  } as any);\n                  layer.addElement(newElement);\n                }\n              }\n            }\n          } catch (fileError) {\n            // Log YAML parsing errors but continue loading other files\n            const errorMsg = fileError instanceof Error ? fileError.message : String(fileError);\n            console.error(`Warning: Failed to parse ${filePath}: ${errorMsg}`);\n            parseErrorCount++;\n            // Continue with next file\n          }\n        }\n      }\n\n      // If we had parse errors, add a note to the layer\n      if (parseErrorCount > 0) {\n        console.error(\n          `Warning: Layer '${name}' loaded with ${parseErrorCount} YAML parse error(s)`\n        );\n      }\n\n      this.layers.set(name, layer);\n      this.loadedLayers.add(name);\n\n      layerSpan.setAttribute(\"layer.element_count\", layer.elements.size);\n    }, { \"layer.name\": name });\n  }\n\n  /**\n   * Add a layer to the model\n   */\n  addLayer(layer: Layer): void {\n    // If the layer has elements in its isolated graph, migrate them to the model's graph\n    if (layer.graph.getNodeCount() > 0) {\n      for (const node of layer.graph.nodes.values()) {\n        this.graph.addNode(node);\n      }\n      for (const edge of layer.graph.edges.values()) {\n        this.graph.addEdge(edge);\n      }\n    }\n    // Ensure layer uses the model's graph for future operations\n    layer.graph = this.graph;\n    this.layers.set(layer.name, layer);\n    this.loadedLayers.add(layer.name);\n  }\n\n  /**\n   * Get all layer names, including layers that exist only in staged changes.\n   * When an active changeset introduces elements for a layer with no committed data,\n   * that layer name is included so findElementLayer() and other callers can discover it.\n   */\n  getLayerNames(): string[] {\n    const base = Array.from(this.layers.keys());\n    if (this._stagedLayerNames.size === 0) {\n      return base;\n    }\n    // Include staged-only layers (layers that have staged elements but no committed elements)\n    const staged = Array.from(this._stagedLayerNames).filter((l) => !this.layers.has(l));\n    return [...base, ...staged];\n  }\n\n  /**\n   * Save a layer to disk (model/XX_layername/*.yaml)\n   */\n  async saveLayer(name: string): Promise<void> {\n    const layer = this.layers.get(name);\n    if (!layer) {\n      throw new Error(`Layer ${name} not found`);\n    }\n\n    const fs = await import(\"fs/promises\");\n    const yaml = await import(\"yaml\");\n\n    let layerPath: string | null = null;\n\n    // Discover by scanning directory\n    const modelDir = `${this.rootPath}/documentation-robotics/model`;\n\n    try {\n      const entries = await fs.readdir(modelDir, { withFileTypes: true });\n      const layerDir = entries.find(\n        (e) =>\n          e.isDirectory() && e.name.match(/^\\d{2}_/) && e.name.replace(/^\\d{2}_/, \"\") === name\n      );\n\n      if (layerDir) {\n        layerPath = `${modelDir}/${layerDir.name}`;\n      }\n    } catch {\n      // Model directory doesn't exist or can't be read\n    }\n\n    // If still not found, create using default format\n    if (!layerPath) {\n      // Find the order number for this layer\n      // Handle layer names with or without numeric prefix (e.g., \"motivation\" or \"01-motivation\")\n      const layerNameWithoutPrefix = name.replace(/^\\d{2}-/, \"\");\n      const index = CANONICAL_LAYER_NAMES.indexOf(layerNameWithoutPrefix as typeof CANONICAL_LAYER_NAMES[number]);\n      if (index >= 0) {\n        const orderNum = String(index + 1).padStart(2, \"0\");\n        layerPath = `${this.rootPath}/documentation-robotics/model/${orderNum}_${layerNameWithoutPrefix}`;\n        await ensureDir(layerPath);\n      } else {\n        throw new Error(`Unknown layer ${name} and no path configured in manifest`);\n      }\n    }\n\n    // Delete all existing YAML files in the layer directory to ensure\n    // we don't keep stale files after element deletion\n    try {\n      const existingFiles = await fs.readdir(layerPath);\n      for (const file of existingFiles) {\n        if (file.endsWith(\".yaml\") || file.endsWith(\".yml\")) {\n          await fs.unlink(`${layerPath}/${file}`);\n        }\n      }\n    } catch (err) {\n      // Only ignore \"directory not found\" errors \u2014 re-throw permission/I/O errors\n      const isNotFoundError = (err as any)?.code === \"ENOENT\";\n      if (!isNotFoundError) {\n        throw new Error(\n          `Failed to clean existing YAML files: ${err instanceof Error ? err.message : String(err)}`\n        );\n      }\n    }\n\n    // Group elements by type, computing the snake_case file stem from the spec node title\n    const elementsByType = new Map<string, { stem: string; elements: Element[] }>();\n    for (const element of layer.elements.values()) {\n      const typeKey = element.type;\n      if (!elementsByType.has(typeKey)) {\n        const stem = typeToSnakeStem(element.spec_node_id, element.type);\n        elementsByType.set(typeKey, { stem, elements: [] });\n      }\n      elementsByType.get(typeKey)!.elements.push(element);\n    }\n\n    // Internal graph fields \u2014 never written to YAML\n    const INTERNAL_FIELDS = new Set([\n      \"__references__\", \"__relationships__\",\n      \"source\", \"x-source-reference\",\n    ]);\n\n    // Write each type to its own YAML file\n    for (const [, { stem, elements }] of elementsByType) {\n      const filename = `${stem}.yaml`;\n      const filePath = `${layerPath}/${filename}`;\n\n      // Convert elements to spec-node format YAML\n      const yamlData: any = {};\n      for (const element of elements) {\n        const json = element.toJSON();\n\n        // Clean attributes: remove graph-internal keys that should not be persisted\n        const cleanAttrs = json.attributes\n          ? Object.fromEntries(\n              Object.entries(json.attributes).filter(([k]) => !INTERNAL_FIELDS.has(k))\n            )\n          : undefined;\n\n        // Use path as YAML key (human-readable); fall back to id for elements without path\n        const key = element.path || element.id;\n        yamlData[key] = {\n          id: json.id,\n          path: json.path,\n          spec_node_id: json.spec_node_id,\n          type: json.type,\n          layer_id: json.layer_id,\n          name: json.name,\n          ...(json.description && { description: json.description }),\n          ...(cleanAttrs && Object.keys(cleanAttrs).length > 0 && { attributes: cleanAttrs }),\n          ...(json.source_reference && { source_reference: json.source_reference }),\n          ...(json.metadata && { metadata: json.metadata }),\n          ...(json.references && json.references.length > 0 && { references: json.references }),\n          // Relationships are now stored in centralized relationships.yaml, not inline\n        };\n      }\n\n      await writeFile(filePath, yaml.stringify(yamlData));\n    }\n\n    layer.markClean();\n  }\n\n  /**\n   * Save model (saves all dirty layers and manifest)\n   */\n  async save(): Promise<void> {\n    await this.saveDirtyLayers();\n    await this.saveManifest();\n  }\n\n  /**\n   * Save all dirty layers to disk\n   */\n  async saveDirtyLayers(): Promise<void> {\n    // Count dirty layers before operation\n    let dirtyLayerCount = 0;\n    for (const layer of this.layers.values()) {\n      if (layer.isDirty()) {\n        dirtyLayerCount++;\n      }\n    }\n\n    const span = isTelemetryEnabled\n      ? startSpan(\"model.save\", {\n          \"model.path\": this.rootPath,\n          \"model.dirty_layer_count\": dirtyLayerCount,\n        })\n      : null;\n\n    try {\n      for (const layer of this.layers.values()) {\n        if (layer.isDirty()) {\n          await this.saveLayer(layer.name);\n        }\n      }\n    } finally {\n      if (isTelemetryEnabled) {\n        endSpan(span);\n      }\n    }\n  }\n\n  /**\n   * Save the manifest to disk (documentation-robotics/model/manifest.yaml)\n   */\n  async saveManifest(): Promise<void> {\n    this.manifest.updateModified();\n    const yaml = await import(\"yaml\");\n    const manifestPath = `${this.rootPath}/documentation-robotics/model/manifest.yaml`;\n\n    // Convert to YAML format\n    const yamlData: any = {\n      version: this.manifest.version,\n      schema: \"documentation-robotics-v1\",\n      cli_version: getCliVersion(),\n      spec_version: this.manifest.specVersion,\n      created: this.manifest.created,\n      updated: this.manifest.modified,\n      project: {\n        name: this.manifest.name,\n        description: this.manifest.description,\n        version: this.manifest.version,\n      },\n      documentation: \".dr/README.md\",\n      layers: {},\n    };\n\n    // Generate layer structure from current model state\n    for (let i = 0; i < CANONICAL_LAYER_NAMES.length; i++) {\n      const layerName = CANONICAL_LAYER_NAMES[i];\n      const layer = this.layers.get(layerName);\n      const orderNum = String(i + 1).padStart(2, \"0\");\n\n      yamlData.layers[layerName] = {\n        order: i + 1,\n        name: layerName.charAt(0).toUpperCase() + layerName.slice(1).replace(\"-\", \" \"),\n        path: `documentation-robotics/model/${orderNum}_${layerName}/`,\n        enabled: true,\n        ...(layer && { elements: this.getLayerElementCounts(layer) }),\n      };\n    }\n\n    if (this.manifest.changeset_history && this.manifest.changeset_history.length > 0) {\n      yamlData.changeset_history = this.manifest.changeset_history;\n    }\n\n    await ensureDir(`${this.rootPath}/documentation-robotics/model`);\n    await writeFile(manifestPath, yaml.stringify(yamlData));\n  }\n\n  private getLayerElementCounts(layer: Layer): Record<string, number> {\n    const counts: Record<string, number> = {};\n    for (const element of layer.elements.values()) {\n      counts[element.type] = (counts[element.type] || 0) + 1;\n    }\n    return counts;\n  }\n\n  /**\n   * Load relationships from relationships.yaml\n   */\n  async loadRelationships(): Promise<void> {\n    const fs = await import(\"fs/promises\");\n    const yaml = await import(\"yaml\");\n    const relationshipsPath = `${this.rootPath}/documentation-robotics/model/relationships.yaml`;\n\n    let data: any;\n    try {\n      const yamlContent = await fs.readFile(relationshipsPath, \"utf-8\");\n      data = yaml.parse(yamlContent);\n    } catch (err) {\n      // If file doesn't exist, that's okay - start with empty relationships\n      if ((err as any).code !== \"ENOENT\") {\n        // But if it's a different error (YAML parse, permission denied, etc), throw it\n        // so the caller knows about the issue\n        throw new Error(\n          `Failed to load relationships.yaml: ${err instanceof Error ? err.message : String(err)}`\n        );\n      }\n      // ENOENT: file doesn't exist, return with empty relationships\n      return;\n    }\n\n    // Validate that parsed content is an array\n    if (!Array.isArray(data)) {\n      const typeLabel = data === null ? \"null\" : typeof data;\n      console.warn(\n        `Warning: relationships.yaml contains non-array content (received ${typeLabel}). Expected an array of relationships. Skipping relationship loading.`\n      );\n      return;\n    }\n\n    this.relationships = Relationships.fromArray(data);\n    // Sync relationships to graph as a secondary in-memory index.\n    // addEdge() may throw if nodes from other layers haven't been loaded yet;\n    // failures are silently skipped \u2014 this.relationships holds the primary data.\n    for (let i = 0; i < data.length; i++) {\n      const rel = data[i];\n      const edge: GraphEdge = {\n        id: `rel-${i}-${crypto.randomBytes(4).toString(\"hex\")}`,\n        source: rel.source,\n        destination: rel.target,\n        predicate: rel.predicate,\n        properties: rel.properties,\n        category: rel.category,\n      };\n      try {\n        this.graph.addEdge(edge);\n      } catch {\n        // Silently skip edges whose nodes haven't been loaded yet.\n        // The primary relationship data lives in this.relationships; the graph\n        // is a secondary index. Cross-layer relationships referencing nodes from\n        // unloaded layers are expected during partial model construction.\n      }\n    }\n  }\n\n  /**\n   * Save relationships to relationships.yaml\n   */\n  async saveRelationships(): Promise<void> {\n    const fs = await import(\"fs/promises\");\n    const yaml = await import(\"yaml\");\n    const relationshipsPath = `${this.rootPath}/documentation-robotics/model/relationships.yaml`;\n\n    await ensureDir(`${this.rootPath}/documentation-robotics/model`);\n\n    const data = this.relationships.toArray();\n\n    // Add header comment with timestamp to ensure file always changes\n    const timestamp = new Date().toISOString();\n    const header = `# Intra-layer relationships\n# Format: source_id -> predicate -> target_id\n# Last updated: ${timestamp}\n\n`;\n    const yamlContent = header + yaml.stringify(data);\n\n    await fs.writeFile(relationshipsPath, yamlContent, \"utf-8\");\n    this.relationships.markClean();\n  }\n\n  /**\n   * Resolve model paths (private helper)\n   *\n   * @param startPath - Starting path for search\n   * @returns Project root and manifest path\n   */\n  private static async resolveModelPaths(startPath?: string): Promise<{\n    projectRoot: string;\n    manifestPath: string;\n  }> {\n    const searchPath = startPath || process.cwd();\n\n    // Optional override via env var (highest priority)\n    if (process.env.DR_MODEL_PATH) {\n      const envPath = path.resolve(process.env.DR_MODEL_PATH);\n      let manifestPath: string;\n\n      if (envPath.endsWith(\"manifest.yaml\")) {\n        manifestPath = envPath;\n      } else if (envPath.endsWith(\"model\")) {\n        manifestPath = path.join(envPath, \"manifest.yaml\");\n      } else {\n        manifestPath = path.join(envPath, \"documentation-robotics\", \"model\", \"manifest.yaml\");\n      }\n\n      try {\n        await fs.access(manifestPath);\n        const projectRoot = path.dirname(path.dirname(path.dirname(manifestPath)));\n        return { projectRoot, manifestPath: path.normalize(manifestPath) };\n      } catch {\n        throw new Error(`Model not found at DR_MODEL_PATH: ${process.env.DR_MODEL_PATH}`);\n      }\n    }\n\n    // Use findProjectRoot to locate documentation_robotics/ folder\n    const projectRoot = await findProjectRoot(searchPath);\n\n    if (!projectRoot) {\n      throw new Error(\n        \"No DR project found. Could not find documentation_robotics/ folder.\\n\" +\n          'Run \"dr init\" to create a new project, or navigate to a directory containing a DR project.'\n      );\n    }\n\n    const manifestPath = path.join(projectRoot, \"documentation-robotics\", \"model\", \"manifest.yaml\");\n\n    try {\n      await fs.access(manifestPath);\n      return { projectRoot, manifestPath };\n    } catch {\n      throw new Error(\n        `Found documentation_robotics/ at ${projectRoot} but no model found. ` +\n          `Expected: ${manifestPath}\\n` +\n          `Run \"dr init\" to create a model.`\n      );\n    }\n  }\n\n  /**\n   * Load a model from disk\n   *\n   * Expected structure:\n   * <project-root>/\n   * \u2514\u2500\u2500 documentation_robotics/\n   *     \u2514\u2500\u2500 model/\n   *         \u2514\u2500\u2500 manifest.yaml\n   *\n   * @param startPath - Starting path for project search (defaults to process.cwd())\n   * @param options - Model loading options\n   * @returns Loaded Model instance\n   */\n  static async load(startPath?: string, options: ModelOptions = {}): Promise<Model> {\n    return startActiveSpan(\"model.load\", async (span) => {\n      // Resolve project root and manifest path\n      const { projectRoot, manifestPath } = await Model.resolveModelPaths(startPath);\n\n      const yaml = await import(\"yaml\");\n\n      // Load manifest from resolved path\n      const yamlContent = await fs.readFile(manifestPath, \"utf-8\");\n      const manifestYaml = yaml.parse(yamlContent);\n\n      // Convert manifest to internal format\n      const manifestData: any = {\n        name: manifestYaml.project?.name || \"Unnamed Model\",\n        description: manifestYaml.project?.description || \"\",\n        version: manifestYaml.project?.version || manifestYaml.version || \"0.1.0\",\n        specVersion: manifestYaml.spec_version || \"0.6.0\",\n        created: manifestYaml.created || new Date().toISOString(),\n        modified: manifestYaml.updated || new Date().toISOString(),\n      };\n      const manifest = new Manifest(manifestData);\n      const model = new Model(projectRoot, manifest, options);\n\n      // Load all available layers if lazyLoad is false\n      if (!options.lazyLoad) {\n        try {\n          // If manifest has layer definitions, use those\n          if (manifestYaml.layers) {\n            for (const layerName of Object.keys(manifestYaml.layers)) {\n              const layerConfig = manifestYaml.layers[layerName];\n              if (layerConfig.enabled !== false) {\n                if (!options.layers || options.layers.includes(layerName)) {\n                  await model.loadLayer(layerName);\n                }\n              }\n            }\n          } else {\n            // Otherwise scan for layer directories\n            const modelDir = manifestPath.replace(\"/manifest.yaml\", \"\");\n            const entries = await fs.readdir(modelDir, { withFileTypes: true });\n\n            for (const entry of entries) {\n              if (entry.isDirectory() && entry.name.match(/^\\d{2}_/)) {\n                const layerName = entry.name.replace(/^\\d{2}_/, \"\");\n                if (!options.layers || options.layers.includes(layerName)) {\n                  await model.loadLayer(layerName);\n                }\n              }\n            }\n          }\n        } catch (e) {\n          // Check if this is a \"directory not found\" error (expected case)\n          const isNotFoundError = (e as any)?.code === \"ENOENT\";\n          if (!isNotFoundError) {\n            // Re-throw non-ENOENT errors: permission errors, YAML parsing failures, I/O errors, etc.\n            throw new Error(\n              `Failed to load layers: ${e instanceof Error ? e.message : String(e)}`\n            );\n          }\n          // ENOENT is expected if layer directory doesn't exist yet, so just continue\n        }\n      }\n\n      // Load relationships from relationships.yaml\n      await model.loadRelationships();\n\n      // Check for active changeset and pre-load staged metadata for transparent projection.\n      // This enables getLayer() to return projected views and getLayerNames() to include\n      // layers that exist only in staged changes.\n      const activePath = path.join(\n        projectRoot,\n        \"documentation-robotics\",\n        \"changesets\",\n        \".active\"\n      );\n      try {\n        const activeContent = await fs.readFile(activePath, \"utf-8\");\n        const activeId = activeContent.trim();\n        if (activeId) {\n          model._activeChangesetId = activeId;\n          const storage = new StagedChangesetStorage(projectRoot);\n          const changeset = await storage.load(activeId);\n          if (changeset) {\n            for (const change of changeset.changes as StagedChange[]) {\n              // Track layer names for getLayerNames()\n              if (\n                change.type === \"add\" ||\n                change.type === \"update\" ||\n                change.type === \"delete\"\n              ) {\n                model._stagedLayerNames.add(change.layerName);\n              }\n\n              // Inject staged relationship-adds into model.relationships so that\n              // read commands (list, show, export) transparently see staged relationships.\n              if (change.type === \"relationship-add\" && change.after) {\n                const rel = change.after as {\n                  source: string;\n                  target: string;\n                  predicate: string;\n                  layer: string;\n                  targetLayer?: string;\n                  category?: \"structural\" | \"behavioral\";\n                  properties?: Record<string, unknown>;\n                };\n                // Only inject if not already in relationships.yaml (prevents duplicates\n                // if .active file is stale after a partial commit or manual edit).\n                const alreadyPresent = model.relationships.find(\n                  rel.source,\n                  rel.target,\n                  rel.predicate\n                );\n                if (alreadyPresent.length === 0) {\n                  model.relationships.add({\n                    source: rel.source,\n                    target: rel.target,\n                    predicate: rel.predicate,\n                    layer: rel.layer,\n                    ...(rel.targetLayer ? { targetLayer: rel.targetLayer } : {}),\n                    category: rel.category ?? \"structural\",\n                    ...(rel.properties ? { properties: rel.properties } : {}),\n                  });\n                }\n              }\n\n              // Remove staged relationship-deletes from model.relationships so that\n              // read commands see the relationship as already deleted.\n              if (change.type === \"relationship-delete\" && change.before) {\n                const rel = change.before as {\n                  source: string;\n                  target: string;\n                  predicate?: string;\n                };\n                model.relationships.delete(rel.source, rel.target, rel.predicate);\n              }\n            }\n          }\n        }\n      } catch {\n        // No active changeset or unreadable \u2014 proceed with base model only\n        model._activeChangesetId = null;\n      }\n\n      // Count total entities across all layers\n      let entityCount = 0;\n      for (const layer of model.layers.values()) {\n        entityCount += layer.elements.size;\n      }\n\n      span.setAttribute(\"model.entity_count\", entityCount);\n      span.setAttribute(\"model.layer_count\", model.layers.size);\n\n      return model;\n    }, {\n      \"model.path\": startPath || process.cwd(),\n      \"model.type\": \"dr\",\n    });\n  }\n\n  /**\n   * Initialize a new model in a directory\n   */\n  static async init(\n    rootPath: string,\n    manifestData: ManifestData,\n    options: ModelOptions = {}\n  ): Promise<Model> {\n    // Create model directory structure\n    await ensureDir(`${rootPath}/documentation-robotics/model`);\n\n    for (let i = 0; i < CANONICAL_LAYER_NAMES.length; i++) {\n      const orderNum = String(i + 1).padStart(2, \"0\");\n      const layerName = CANONICAL_LAYER_NAMES[i];\n      await ensureDir(`${rootPath}/documentation-robotics/model/${orderNum}_${layerName}`);\n    }\n\n    const manifest = new Manifest(manifestData);\n    const model = new Model(rootPath, manifest, options);\n\n    await model.saveManifest();\n\n    return model;\n  }\n\n  /**\n   * Graph-based API methods for querying the model\n   * These methods delegate to the underlying GraphModel for efficient queries\n   */\n\n  /**\n   * Get a node by its UUID\n   */\n  getNode(id: string) {\n    return this.graph.getNode(id);\n  }\n\n  /**\n   * Get all nodes in a specific layer\n   */\n  getNodesByLayer(layerId: string) {\n    return this.graph.getNodesByLayer(layerId);\n  }\n\n  /**\n   * Get all nodes of a specific type\n   */\n  getNodesByType(type: string) {\n    return this.graph.getNodesByType(type);\n  }\n\n  /**\n   * Get all edges (relationships) in the model\n   */\n  getAllEdges() {\n    return this.graph.getAllEdges();\n  }\n\n  /**\n   * Get edges originating from a specific node\n   */\n  getEdgesFrom(nodeId: string, predicate?: string) {\n    return this.graph.getEdgesFrom(nodeId, predicate);\n  }\n\n  /**\n   * Get edges terminating at a specific node\n   */\n  getEdgesTo(nodeId: string, predicate?: string) {\n    return this.graph.getEdgesTo(nodeId, predicate);\n  }\n\n  /**\n   * Get edges between two specific nodes\n   */\n  getEdgesBetween(sourceId: string, destinationId: string, predicate?: string) {\n    return this.graph.getEdgesBetween(sourceId, destinationId, predicate);\n  }\n\n  /**\n   * Traverse the graph starting from a node, following a specific predicate\n   */\n  async traverse(startNodeId: string, predicate: string, maxDepth: number = 10) {\n    return this.graph.traverse(startNodeId, predicate, maxDepth);\n  }\n\n  /**\n   * Create a backup of the current model state\n   * Used for rollback support in migration operations\n   *\n   * @param label Descriptive label for the backup (e.g., \"pre-migration\")\n   * @returns Path to the backup directory\n   */\n  async createBackup(label: string): Promise<string> {\n    const timestamp = new Date().toISOString().replace(/[:.]/g, \"-\");\n    const backupDir = path.join(this.rootPath, \".dr-backups\", `${label}-${timestamp}`);\n\n    // Create backup directory\n    await ensureDir(backupDir);\n\n    // Backup layers directory\n    const layersSource = path.join(this.rootPath, \"documentation-robotics\", \"model\");\n    const layersBackup = path.join(backupDir, \"layers\");\n    if (await this.directoryExists(layersSource)) {\n      await this.copyDirectory(layersSource, layersBackup);\n    }\n\n    // Backup manifest\n    const manifestSource = path.join(this.rootPath, \"documentation-robotics\", \"model\", \"manifest.yaml\");\n    const manifestBackup = path.join(backupDir, \"manifest.yaml\");\n    if (await this.fileExists(manifestSource)) {\n      await fs.copyFile(manifestSource, manifestBackup);\n    }\n\n    return backupDir;\n  }\n\n  /**\n   * Restore model from a backup directory\n   * Used for rollback after failed migrations\n   *\n   * @param backupPath Path to the backup directory\n   */\n  async restoreFromBackup(backupPath: string): Promise<void> {\n    // Restore layers\n    const layersBackup = path.join(backupPath, \"layers\");\n    const layersTarget = path.join(this.rootPath, \"documentation-robotics\", \"model\");\n    if (await this.directoryExists(layersBackup)) {\n      await this.copyDirectory(layersBackup, layersTarget);\n    }\n\n    // Restore manifest\n    const manifestBackup = path.join(backupPath, \"manifest.yaml\");\n    const manifestTarget = path.join(this.rootPath, \"documentation-robotics\", \"model\", \"manifest.yaml\");\n    if (await this.fileExists(manifestBackup)) {\n      await fs.copyFile(manifestBackup, manifestTarget);\n    }\n\n    // Reload model to refresh in-memory state\n    const reloadedModel = await Model.load(this.rootPath, { lazyLoad: this.lazyLoad });\n    this.layers = reloadedModel.layers;\n    this.manifest = reloadedModel.manifest;\n    this.graph = reloadedModel.graph;\n    this.relationships = reloadedModel.relationships;\n  }\n\n  /**\n   * Save dirty layers with atomic write semantics\n   * Writes to temporary file first, then renames on success to ensure data safety\n   *\n   * @throws Error if atomic write fails\n   */\n  async saveDirtyLayersAtomic(): Promise<void> {\n    // First, save all layers to temporary files\n    const tempLayerWrites: Array<{ layer: Layer; tempPath: string }> = [];\n\n    try {\n      for (const layer of this.layers.values()) {\n        if (layer.isDirty()) {\n     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directory and rename temp to actual\n        if (await this.directoryExists(layerPath)) {\n          await fs.rm(layerPath, { recursive: true, force: true });\n        }\n        await fs.rename(tempPath, layerPath);\n      }\n    } catch (error) {\n      // Cleanup any temp directories on failure\n      for (const { tempPath } of tempLayerWrites) {\n        if (await this.directoryExists(tempPath)) {\n          await fs.rm(tempPath, { recursive: true, force: true });\n        }\n      }\n      throw error;\n    }\n  }\n\n  /**\n   * Helper: Check if file exists\n   */\n  private async fileExists(filePath: string): Promise<boolean> {\n    try {\n      await fs.access(filePath);\n      return true;\n    } catch {\n      return false;\n    }\n  }\n\n  /**\n   * Helper: Check if directory exists\n   */\n  private async directoryExists(dirPath: string): Promise<boolean> {\n    try {\n      const stat = await fs.stat(dirPath);\n      return stat.isDirectory();\n    } catch {\n      return false;\n    }\n  }\n\n  /**\n   * Helper: Recursively copy directory\n   */\n  private async copyDirectory(src: string, dest: string): Promise<void> {\n    await ensureDir(dest);\n    const entries = await fs.readdir(src, { withFileTypes: true });\n\n    for (const entry of entries) {\n      const srcPath = path.join(src, entry.name);\n      const destPath = path.join(dest, entry.name);\n\n      if (entry.isDirectory()) {\n        await this.copyDirectory(srcPath, destPath);\n      } else {\n        await fs.copyFile(srcPath, destPath);\n      }\n    }\n  }\n}\n"],
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   "names": ["path", "fs", "layerId", "manifestPath"]
 }

package/dist/core/spec-loader.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/core/spec-loader.ts"],
-  "sourcesContent": ["/**\n * SpecDataLoader - Loads specification metadata from compiled bundled dist files\n *\n * Reads directly from the 14 compiled JSON files in cli/src/schemas/bundled/:\n *   manifest.json, base.json, {layer}.json (x12)\n *\n * Never reads from .dr/ or expanded individual schema files.\n */\n\nimport path from \"node:path\";\nimport { fileURLToPath } from \"url\";\nimport fs from \"node:fs/promises\";\nimport { existsSync } from \"fs\";\nimport { getErrorMessage } from \"../utils/errors.js\";\nimport { logDebug } from \"../utils/globals.js\";\nimport {\n  LayerSpec,\n  NodeTypeSpec,\n  RelationshipTypeSpec,\n  PredicateSpec,\n  SpecData,\n  SpecStatistics,\n  SpecLoaderOptions,\n  NodeTypeQueryFilter,\n  RelationshipTypeQueryFilter,\n  AttributeSpec,\n} from \"./spec-loader-types.js\";\n\n// Bundled dist format types (matches spec/dist/ output)\ninterface CompiledManifest {\n  specVersion: string;\n  builtAt: string;\n  layers: Array<{ id: string; number: number; name: string; nodeTypeCount: number; relationshipCount: number }>;\n}\n\ninterface CompiledBase {\n  specVersion: string;\n  schemas: Record<string, unknown>;\n  predicates: Record<string, unknown>;\n}\n\ninterface CompiledRelationshipFlat {\n  id: string;\n  source_spec_node_id: string;\n  source_layer: string;\n  destination_spec_node_id: string;\n  destination_layer: string;\n  predicate: string;\n  cardinality?: string;\n  strength?: string;\n  required?: boolean;\n}\n\ninterface CompiledLayer {\n  layer: Record<string, unknown>;\n  nodeSchemas: Record<string, Record<string, unknown>>;\n  relationshipSchemas: Record<string, CompiledRelationshipFlat>;\n}\n\n/**\n * SpecDataLoader loads specification metadata from the compiled bundled dist files\n */\nexport class SpecDataLoader {\n  private bundledDir: string;\n  private options: SpecLoaderOptions;\n  private cachedData: SpecData | null = null;\n  private loadedAt: Date | null = null;\n\n  constructor(options: SpecLoaderOptions = {}) {\n    this.options = {\n      cache: true,\n      includeSchemas: false,\n      ...options,\n    };\n\n    this.bundledDir = this.options.bundledDir || this.getDefaultBundledDir();\n  }\n\n  /**\n   * Resolve the bundled dist directory.\n   *\n   * Priority:\n   * 1. Explicit override via options.bundledDir\n   * 2. CLI installation: schemas/bundled/ next to compiled source\n   * 3. Development monorepo: spec/dist/\n   */\n  private getDefaultBundledDir(): string {\n    const currentDir = path.dirname(fileURLToPath(import.meta.url));\n\n    // Try 1: CLI installation (dist/core \u2192 dist/schemas/bundled)\n    const installPath = path.join(currentDir, \"..\", \"schemas\", \"bundled\");\n    if (existsSync(path.join(installPath, \"manifest.json\"))) {\n      logDebug(`SpecDataLoader using bundled schemas: ${installPath}`);\n      return installPath;\n    }\n\n    // Try 2: Development path \u2014 spec/dist/ in monorepo\n    const devDistPath = path.join(currentDir, \"../../../spec/dist\");\n    if (existsSync(path.join(devDistPath, \"manifest.json\"))) {\n      logDebug(`SpecDataLoader using bundled schemas: ${devDistPath}`);\n      return devDistPath;\n    }\n\n    throw new Error(\n      \"Cannot find compiled spec schemas. Tried:\\n\" +\n      `  1. CLI installation: ${installPath}\\n` +\n      `  2. Development monorepo: ${devDistPath}\\n\\n` +\n      \"Ensure you have built the spec (npm run build:spec) or installed the CLI.\"\n    );\n  }\n\n  /**\n   * Load all specification data\n   */\n  async load(): Promise<SpecData> {\n    if (this.options.cache && this.cachedData) {\n      return this.cachedData;\n    }\n\n    try {\n      const [layers, nodeTypes, relationshipTypes, predicates] = await Promise.all([\n        this.loadLayers(),\n        this.loadNodeTypes(),\n        this.loadRelationshipTypes(),\n        this.loadPredicates(),\n      ]);\n\n      const data: SpecData = { layers, nodeTypes, relationshipTypes, predicates };\n\n      if (this.options.cache) {\n        this.cachedData = data;\n        this.loadedAt = new Date();\n      }\n\n      return data;\n    } catch (error) {\n      throw new Error(\n        `Failed to load specification data from ${this.bundledDir}: ${getErrorMessage(error)}`\n      );\n    }\n  }\n\n  /**\n   * Load layer specifications from manifest.json + per-layer files\n   */\n  private async loadLayers(): Promise<LayerSpec[]> {\n    const manifest = await this.readManifest();\n    const layers: LayerSpec[] = [];\n\n    for (const entry of manifest.layers) {\n      const layerFile = path.join(this.bundledDir, `${entry.id}.json`);\n      const content = await fs.readFile(layerFile, \"utf-8\");\n      const layerData = JSON.parse(content) as CompiledLayer;\n      const layer = layerData.layer as unknown as LayerSpec;\n      layers.push(layer);\n    }\n\n    return layers.sort((a, b) => a.number - b.number);\n  }\n\n  /**\n   * Load node type specifications from nodeSchemas in each layer file\n   */\n  private async loadNodeTypes(): Promise<NodeTypeSpec[]> {\n    const manifest = await this.readManifest();\n    const nodeTypes: NodeTypeSpec[] = [];\n\n    for (const entry of manifest.layers) {\n      const layerFile = path.join(this.bundledDir, `${entry.id}.json`);\n      const content = await fs.readFile(layerFile, \"utf-8\");\n      const layerData = JSON.parse(content) as CompiledLayer;\n\n      for (const [, schema] of Object.entries(layerData.nodeSchemas)) {\n        const spec_node_id = (schema.properties as Record<string, Record<string, unknown>>)?.spec_node_id?.const as string;\n        const layer_id = (schema.properties as Record<string, Record<string, unknown>>)?.layer_id?.const as string;\n        const type = (schema.properties as Record<string, Record<string, unknown>>)?.type?.const as string;\n\n        if (!spec_node_id || !layer_id || !type) {\n          throw new Error(\n            `Node schema in ${entry.id}.json missing required const values: spec_node_id=${spec_node_id}, layer_id=${layer_id}, type=${type}`\n          );\n        }\n\n        nodeTypes.push({\n          spec_node_id,\n          layer_id,\n          type,\n          title: (schema.title as string) || \"\",\n          description: (schema.description as string) || \"\",\n          attributes: this.extractAttributes((schema.properties as Record<string, unknown>)?.attributes as Record<string, unknown>),\n          ...(this.options.includeSchemas && { schema: schema as Record<string, unknown> }),\n        });\n      }\n    }\n\n    return nodeTypes;\n  }\n\n  /**\n   * Extract attribute specifications from node schema\n   */\n  private extractAttributes(attributesSchema: Record<string, unknown>): AttributeSpec[] {\n    if (!attributesSchema || !attributesSchema.properties) {\n      return [];\n    }\n\n    const props = attributesSchema.properties as Record<string, Record<string, unknown>>;\n    const required = new Set((attributesSchema.required as string[]) || []);\n\n    return Object.entries(props).map(([name, schema]) => ({\n      name,\n      type: (schema.type as string) || \"unknown\",\n      format: schema.format as string | undefined,\n      required: required.has(name),\n      description: schema.description as string | undefined,\n    }));\n  }\n\n  /**\n   * Load relationship type specifications from relationshipSchemas in each layer file\n   *\n   * The bundled format stores flat data directly (not wrapped in JSON Schema),\n   * so we read the fields directly rather than extracting from .const values.\n   */\n  private async loadRelationshipTypes(): Promise<RelationshipTypeSpec[]> {\n    const manifest = await this.readManifest();\n    const relationshipTypes: RelationshipTypeSpec[] = [];\n\n    for (const entry of manifest.layers) {\n      const layerFile = path.join(this.bundledDir, `${entry.id}.json`);\n      const content = await fs.readFile(layerFile, \"utf-8\");\n      const layerData = JSON.parse(content) as CompiledLayer;\n\n      for (const rel of Object.values(layerData.relationshipSchemas)) {\n        if (!rel.id || !rel.source_spec_node_id || !rel.source_layer) {\n          throw new Error(\n            `Relationship schema in ${entry.id}.json missing required fields: id=${rel.id}`\n          );\n        }\n\n        relationshipTypes.push({\n          id: rel.id,\n          source_spec_node_id: rel.source_spec_node_id,\n          source_layer: rel.source_layer,\n          destination_spec_node_id: rel.destination_spec_node_id || \"\",\n          destination_layer: rel.destination_layer || \"\",\n          predicate: rel.predicate || \"\",\n          cardinality: rel.cardinality || \"many-to-many\",\n          strength: rel.strength || \"medium\",\n          required: rel.required,\n        });\n      }\n    }\n\n    return relationshipTypes;\n  }\n\n  /**\n   * Load predicate definitions from base.json\n   */\n  private async loadPredicates(): Promise<Map<string, PredicateSpec>> {\n    const basePath = path.join(this.bundledDir, \"base.json\");\n\n    try {\n      const content = await fs.readFile(basePath, \"utf-8\");\n      let data: CompiledBase;\n      try {\n        data = JSON.parse(content) as CompiledBase;\n      } catch (parseError) {\n        throw new Error(`Failed to parse base.json at ${basePath}: ${getErrorMessage(parseError)}`);\n      }\n\n      const predicates = new Map<string, PredicateSpec>();\n      for (const [, pred] of Object.entries(data.predicates)) {\n        const predSpec = pred as unknown as PredicateSpec;\n        predicates.set(predSpec.predicate, {\n          predicate: predSpec.predicate,\n          inverse: predSpec.inverse,\n          category: predSpec.category,\n          description: predSpec.description,\n          archimate_alignment: predSpec.archimate_alignment,\n          semantics: predSpec.semantics,\n        });\n      }\n\n      return predicates;\n    } catch (error) {\n      throw new Error(\n        `Failed to load predicates from ${basePath}: ${getErrorMessage(error)}`\n      );\n    }\n  }\n\n  /**\n   * Read and parse the bundled manifest.json\n   */\n  private async readManifest(): Promise<CompiledManifest> {\n    const manifestPath = path.join(this.bundledDir, \"manifest.json\");\n    const content = await fs.readFile(manifestPath, \"utf-8\");\n    return JSON.parse(content) as CompiledManifest;\n  }\n\n  /**\n   * Get loaded specification data\n   * Throws if data hasn't been loaded yet\n   */\n  getSpecData(): SpecData {\n    if (!this.cachedData) {\n      throw new Error(\"Specification data not loaded. Call load() first.\");\n    }\n    return this.cachedData;\n  }\n\n  isLoaded(): boolean {\n    return this.cachedData !== null;\n  }\n\n  getStatistics(): SpecStatistics {\n    const data = this.getSpecData();\n    return {\n      layerCount: data.layers.length,\n      nodeTypeCount: data.nodeTypes.length,\n      relationshipTypeCount: data.relationshipTypes.length,\n      predicateCount: data.predicates.size,\n      totalAttributes: data.nodeTypes.reduce((sum, nt) => sum + nt.attributes.length, 0),\n      loadedAt: this.loadedAt || new Date(),\n    };\n  }\n\n  clear(): void {\n    this.cachedData = null;\n    this.loadedAt = null;\n  }\n\n  findNodeTypes(filter: NodeTypeQueryFilter = {}): NodeTypeSpec[] {\n    const data = this.getSpecData();\n\n    return data.nodeTypes.filter((nt) => {\n      if (filter.layer && nt.layer_id !== filter.layer) return false;\n      if (filter.type && nt.type !== filter.type) return false;\n      if (filter.specNodeId && nt.spec_node_id !== filter.specNodeId) return false;\n      if (filter.title && !nt.title.toLowerCase().includes(filter.title.toLowerCase()))\n        return false;\n      return true;\n    });\n  }\n\n  findRelationshipTypes(filter: RelationshipTypeQueryFilter = {}): RelationshipTypeSpec[] {\n    const data = this.getSpecData();\n\n    return data.relationshipTypes.filter((rt) => {\n      if (filter.sourceLayer && rt.source_layer !== filter.sourceLayer) return false;\n      if (filter.sourceSpecNodeId && rt.source_spec_node_id !== filter.sourceSpecNodeId)\n        return false;\n      if (filter.destinationLayer && rt.destination_layer !== filter.destinationLayer)\n        return false;\n      if (filter.destinationSpecNodeId && rt.destination_spec_node_id !== filter.destinationSpecNodeId)\n        return false;\n      if (filter.predicate && rt.predicate !== filter.predicate) return false;\n      return true;\n    });\n  }\n\n  getNodeTypesForLayer(layerId: string): NodeTypeSpec[] {\n    return this.findNodeTypes({ layer: layerId });\n  }\n\n  getRelationshipTypesForLayerPair(sourceLayer: string, destLayer?: string): RelationshipTypeSpec[] {\n    const filter: RelationshipTypeQueryFilter = { sourceLayer };\n    if (destLayer) {\n      filter.destinationLayer = destLayer;\n    }\n    return this.findRelationshipTypes(filter);\n  }\n\n  getPredicate(predicateName: string): PredicateSpec | undefined {\n    return this.getSpecData().predicates.get(predicateName);\n  }\n\n  getLayer(layerId: string): LayerSpec | undefined {\n    const data = this.getSpecData();\n    return data.layers.find((l) => l.id === layerId);\n  }\n\n  getAllLayers(): LayerSpec[] {\n    return this.getSpecData().layers;\n  }\n\n  getNodeType(specNodeId: string): NodeTypeSpec | undefined {\n    const data = this.getSpecData();\n    return data.nodeTypes.find((nt) => nt.spec_node_id === specNodeId);\n  }\n\n  getNodeTypesReferencingType(specNodeId: string): RelationshipTypeSpec[] {\n    return this.findRelationshipTypes({ destinationSpecNodeId: specNodeId });\n  }\n\n  getNodeTypesReferencedByType(specNodeId: string): RelationshipTypeSpec[] {\n    return this.findRelationshipTypes({ sourceSpecNodeId: specNodeId });\n  }\n}\n"],
+  "sourcesContent": ["/**\n * SpecDataLoader - Loads specification metadata from compiled bundled dist files\n *\n * Reads directly from the 15 compiled JSON files in cli/src/schemas/bundled/:\n *   manifest.json, base.json, {layer}.json (x13)\n *\n * Never reads from .dr/ or expanded individual schema files.\n */\n\nimport path from \"node:path\";\nimport { fileURLToPath } from \"url\";\nimport fs from \"node:fs/promises\";\nimport { existsSync } from \"fs\";\nimport { getErrorMessage } from \"../utils/errors.js\";\nimport { logDebug } from \"../utils/globals.js\";\nimport {\n  LayerSpec,\n  NodeTypeSpec,\n  RelationshipTypeSpec,\n  PredicateSpec,\n  SpecData,\n  SpecStatistics,\n  SpecLoaderOptions,\n  NodeTypeQueryFilter,\n  RelationshipTypeQueryFilter,\n  AttributeSpec,\n} from \"./spec-loader-types.js\";\n\n// Bundled dist format types (matches spec/dist/ output)\ninterface CompiledManifest {\n  specVersion: string;\n  builtAt: string;\n  layers: Array<{ id: string; number: number; name: string; nodeTypeCount: number; relationshipCount: number }>;\n}\n\ninterface CompiledBase {\n  specVersion: string;\n  schemas: Record<string, unknown>;\n  predicates: Record<string, unknown>;\n}\n\ninterface CompiledRelationshipFlat {\n  id: string;\n  source_spec_node_id: string;\n  source_layer: string;\n  destination_spec_node_id: string;\n  destination_layer: string;\n  predicate: string;\n  cardinality?: string;\n  strength?: string;\n  required?: boolean;\n}\n\ninterface CompiledLayer {\n  layer: Record<string, unknown>;\n  nodeSchemas: Record<string, Record<string, unknown>>;\n  relationshipSchemas: Record<string, CompiledRelationshipFlat>;\n}\n\n/**\n * SpecDataLoader loads specification metadata from the compiled bundled dist files\n */\nexport class SpecDataLoader {\n  private bundledDir: string;\n  private options: SpecLoaderOptions;\n  private cachedData: SpecData | null = null;\n  private loadedAt: Date | null = null;\n\n  constructor(options: SpecLoaderOptions = {}) {\n    this.options = {\n      cache: true,\n      includeSchemas: false,\n      ...options,\n    };\n\n    this.bundledDir = this.options.bundledDir || this.getDefaultBundledDir();\n  }\n\n  /**\n   * Resolve the bundled dist directory.\n   *\n   * Priority:\n   * 1. Explicit override via options.bundledDir\n   * 2. CLI installation: schemas/bundled/ next to compiled source\n   * 3. Development monorepo: spec/dist/\n   */\n  private getDefaultBundledDir(): string {\n    const currentDir = path.dirname(fileURLToPath(import.meta.url));\n\n    // Try 1: CLI installation (dist/core \u2192 dist/schemas/bundled)\n    const installPath = path.join(currentDir, \"..\", \"schemas\", \"bundled\");\n    if (existsSync(path.join(installPath, \"manifest.json\"))) {\n      logDebug(`SpecDataLoader using bundled schemas: ${installPath}`);\n      return installPath;\n    }\n\n    // Try 2: Development path \u2014 spec/dist/ in monorepo\n    const devDistPath = path.join(currentDir, \"../../../spec/dist\");\n    if (existsSync(path.join(devDistPath, \"manifest.json\"))) {\n      logDebug(`SpecDataLoader using bundled schemas: ${devDistPath}`);\n      return devDistPath;\n    }\n\n    throw new Error(\n      \"Cannot find compiled spec schemas. Tried:\\n\" +\n      `  1. CLI installation: ${installPath}\\n` +\n      `  2. Development monorepo: ${devDistPath}\\n\\n` +\n      \"Ensure you have built the spec (npm run build:spec) or installed the CLI.\"\n    );\n  }\n\n  /**\n   * Load all specification data\n   */\n  async load(): Promise<SpecData> {\n    if (this.options.cache && this.cachedData) {\n      return this.cachedData;\n    }\n\n    try {\n      const [layers, nodeTypes, relationshipTypes, predicates] = await Promise.all([\n        this.loadLayers(),\n        this.loadNodeTypes(),\n        this.loadRelationshipTypes(),\n        this.loadPredicates(),\n      ]);\n\n      const data: SpecData = { layers, nodeTypes, relationshipTypes, predicates };\n\n      if (this.options.cache) {\n        this.cachedData = data;\n        this.loadedAt = new Date();\n      }\n\n      return data;\n    } catch (error) {\n      throw new Error(\n        `Failed to load specification data from ${this.bundledDir}: ${getErrorMessage(error)}`\n      );\n    }\n  }\n\n  /**\n   * Load layer specifications from manifest.json + per-layer files\n   */\n  private async loadLayers(): Promise<LayerSpec[]> {\n    const manifest = await this.readManifest();\n    const layers: LayerSpec[] = [];\n\n    for (const entry of manifest.layers) {\n      const layerFile = path.join(this.bundledDir, `${entry.id}.json`);\n      const content = await fs.readFile(layerFile, \"utf-8\");\n      const layerData = JSON.parse(content) as CompiledLayer;\n      const layer = layerData.layer as unknown as LayerSpec;\n      layers.push(layer);\n    }\n\n    return layers.sort((a, b) => a.number - b.number);\n  }\n\n  /**\n   * Load node type specifications from nodeSchemas in each layer file\n   */\n  private async loadNodeTypes(): Promise<NodeTypeSpec[]> {\n    const manifest = await this.readManifest();\n    const nodeTypes: NodeTypeSpec[] = [];\n\n    for (const entry of manifest.layers) {\n      const layerFile = path.join(this.bundledDir, `${entry.id}.json`);\n      const content = await fs.readFile(layerFile, \"utf-8\");\n      const layerData = JSON.parse(content) as CompiledLayer;\n\n      for (const [, schema] of Object.entries(layerData.nodeSchemas)) {\n        const spec_node_id = (schema.properties as Record<string, Record<string, unknown>>)?.spec_node_id?.const as string;\n        const layer_id = (schema.properties as Record<string, Record<string, unknown>>)?.layer_id?.const as string;\n        const type = (schema.properties as Record<string, Record<string, unknown>>)?.type?.const as string;\n\n        if (!spec_node_id || !layer_id || !type) {\n          throw new Error(\n            `Node schema in ${entry.id}.json missing required const values: spec_node_id=${spec_node_id}, layer_id=${layer_id}, type=${type}`\n          );\n        }\n\n        nodeTypes.push({\n          spec_node_id,\n          layer_id,\n          type,\n          title: (schema.title as string) || \"\",\n          description: (schema.description as string) || \"\",\n          attributes: this.extractAttributes((schema.properties as Record<string, unknown>)?.attributes as Record<string, unknown>),\n          ...(this.options.includeSchemas && { schema: schema as Record<string, unknown> }),\n        });\n      }\n    }\n\n    return nodeTypes;\n  }\n\n  /**\n   * Extract attribute specifications from node schema\n   */\n  private extractAttributes(attributesSchema: Record<string, unknown>): AttributeSpec[] {\n    if (!attributesSchema || !attributesSchema.properties) {\n      return [];\n    }\n\n    const props = attributesSchema.properties as Record<string, Record<string, unknown>>;\n    const required = new Set((attributesSchema.required as string[]) || []);\n\n    return Object.entries(props).map(([name, schema]) => ({\n      name,\n      type: (schema.type as string) || \"unknown\",\n      format: schema.format as string | undefined,\n      required: required.has(name),\n      description: schema.description as string | undefined,\n    }));\n  }\n\n  /**\n   * Load relationship type specifications from relationshipSchemas in each layer file\n   *\n   * The bundled format stores flat data directly (not wrapped in JSON Schema),\n   * so we read the fields directly rather than extracting from .const values.\n   */\n  private async loadRelationshipTypes(): Promise<RelationshipTypeSpec[]> {\n    const manifest = await this.readManifest();\n    const relationshipTypes: RelationshipTypeSpec[] = [];\n\n    for (const entry of manifest.layers) {\n      const layerFile = path.join(this.bundledDir, `${entry.id}.json`);\n      const content = await fs.readFile(layerFile, \"utf-8\");\n      const layerData = JSON.parse(content) as CompiledLayer;\n\n      for (const rel of Object.values(layerData.relationshipSchemas)) {\n        if (!rel.id || !rel.source_spec_node_id || !rel.source_layer) {\n          throw new Error(\n            `Relationship schema in ${entry.id}.json missing required fields: id=${rel.id}`\n          );\n        }\n\n        relationshipTypes.push({\n          id: rel.id,\n          source_spec_node_id: rel.source_spec_node_id,\n          source_layer: rel.source_layer,\n          destination_spec_node_id: rel.destination_spec_node_id || \"\",\n          destination_layer: rel.destination_layer || \"\",\n          predicate: rel.predicate || \"\",\n          cardinality: rel.cardinality || \"many-to-many\",\n          strength: rel.strength || \"medium\",\n          required: rel.required,\n        });\n      }\n    }\n\n    return relationshipTypes;\n  }\n\n  /**\n   * Load predicate definitions from base.json\n   */\n  private async loadPredicates(): Promise<Map<string, PredicateSpec>> {\n    const basePath = path.join(this.bundledDir, \"base.json\");\n\n    try {\n      const content = await fs.readFile(basePath, \"utf-8\");\n      let data: CompiledBase;\n      try {\n        data = JSON.parse(content) as CompiledBase;\n      } catch (parseError) {\n        throw new Error(`Failed to parse base.json at ${basePath}: ${getErrorMessage(parseError)}`);\n      }\n\n      const predicates = new Map<string, PredicateSpec>();\n      for (const [, pred] of Object.entries(data.predicates)) {\n        const predSpec = pred as unknown as PredicateSpec;\n        predicates.set(predSpec.predicate, {\n          predicate: predSpec.predicate,\n          inverse: predSpec.inverse,\n          category: predSpec.category,\n          description: predSpec.description,\n          archimate_alignment: predSpec.archimate_alignment,\n          semantics: predSpec.semantics,\n        });\n      }\n\n      return predicates;\n    } catch (error) {\n      throw new Error(\n        `Failed to load predicates from ${basePath}: ${getErrorMessage(error)}`\n      );\n    }\n  }\n\n  /**\n   * Read and parse the bundled manifest.json\n   */\n  private async readManifest(): Promise<CompiledManifest> {\n    const manifestPath = path.join(this.bundledDir, \"manifest.json\");\n    const content = await fs.readFile(manifestPath, \"utf-8\");\n    return JSON.parse(content) as CompiledManifest;\n  }\n\n  /**\n   * Get loaded specification data\n   * Throws if data hasn't been loaded yet\n   */\n  getSpecData(): SpecData {\n    if (!this.cachedData) {\n      throw new Error(\"Specification data not loaded. Call load() first.\");\n    }\n    return this.cachedData;\n  }\n\n  isLoaded(): boolean {\n    return this.cachedData !== null;\n  }\n\n  getStatistics(): SpecStatistics {\n    const data = this.getSpecData();\n    return {\n      layerCount: data.layers.length,\n      nodeTypeCount: data.nodeTypes.length,\n      relationshipTypeCount: data.relationshipTypes.length,\n      predicateCount: data.predicates.size,\n      totalAttributes: data.nodeTypes.reduce((sum, nt) => sum + nt.attributes.length, 0),\n      loadedAt: this.loadedAt || new Date(),\n    };\n  }\n\n  clear(): void {\n    this.cachedData = null;\n    this.loadedAt = null;\n  }\n\n  findNodeTypes(filter: NodeTypeQueryFilter = {}): NodeTypeSpec[] {\n    const data = this.getSpecData();\n\n    return data.nodeTypes.filter((nt) => {\n      if (filter.layer && nt.layer_id !== filter.layer) return false;\n      if (filter.type && nt.type !== filter.type) return false;\n      if (filter.specNodeId && nt.spec_node_id !== filter.specNodeId) return false;\n      if (filter.title && !nt.title.toLowerCase().includes(filter.title.toLowerCase()))\n        return false;\n      return true;\n    });\n  }\n\n  findRelationshipTypes(filter: RelationshipTypeQueryFilter = {}): RelationshipTypeSpec[] {\n    const data = this.getSpecData();\n\n    return data.relationshipTypes.filter((rt) => {\n      if (filter.sourceLayer && rt.source_layer !== filter.sourceLayer) return false;\n      if (filter.sourceSpecNodeId && rt.source_spec_node_id !== filter.sourceSpecNodeId)\n        return false;\n      if (filter.destinationLayer && rt.destination_layer !== filter.destinationLayer)\n        return false;\n      if (filter.destinationSpecNodeId && rt.destination_spec_node_id !== filter.destinationSpecNodeId)\n        return false;\n      if (filter.predicate && rt.predicate !== filter.predicate) return false;\n      return true;\n    });\n  }\n\n  getNodeTypesForLayer(layerId: string): NodeTypeSpec[] {\n    return this.findNodeTypes({ layer: layerId });\n  }\n\n  getRelationshipTypesForLayerPair(sourceLayer: string, destLayer?: string): RelationshipTypeSpec[] {\n    const filter: RelationshipTypeQueryFilter = { sourceLayer };\n    if (destLayer) {\n      filter.destinationLayer = destLayer;\n    }\n    return this.findRelationshipTypes(filter);\n  }\n\n  getPredicate(predicateName: string): PredicateSpec | undefined {\n    return this.getSpecData().predicates.get(predicateName);\n  }\n\n  getLayer(layerId: string): LayerSpec | undefined {\n    const data = this.getSpecData();\n    return data.layers.find((l) => l.id === layerId);\n  }\n\n  getAllLayers(): LayerSpec[] {\n    return this.getSpecData().layers;\n  }\n\n  getNodeType(specNodeId: string): NodeTypeSpec | undefined {\n    const data = this.getSpecData();\n    return data.nodeTypes.find((nt) => nt.spec_node_id === specNodeId);\n  }\n\n  getNodeTypesReferencingType(specNodeId: string): RelationshipTypeSpec[] {\n    return this.findRelationshipTypes({ destinationSpecNodeId: specNodeId });\n  }\n\n  getNodeTypesReferencedByType(specNodeId: string): RelationshipTypeSpec[] {\n    return this.findRelationshipTypes({ sourceSpecNodeId: specNodeId });\n  }\n}\n"],
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package/dist/core/stats-collector.js

@@ -66,6 +66,8 @@ class StatsCollector {
       // goals, principles, requirements, stakeholders
       business: 2,
       // capabilities, services
+      product: 5,
+      // capabilities, features, milestones, personas, workflows
       security: 4,
       // policies, threats, etc
       application: 2,

package/dist/core/stats-collector.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/core/stats-collector.ts"],
-  "sourcesContent": ["/**\n * Statistics collector for architecture models\n * Gathers metrics about elements, relationships, and model completeness\n */\n\nimport { Model } from \"./model.js\";\nimport { Validator } from \"../validators/validator.js\";\n\nexport interface ElementTypeCount {\n  [type: string]: number;\n}\n\nexport interface LayerStats {\n  name: string;\n  totalElements: number;\n  elementsByType: ElementTypeCount;\n  coverage: number; // Percentage of element types used (0-100)\n}\n\nexport interface RelationshipStats {\n  total: number;\n  byPredicate: Record<string, number>;\n  crossLayerCount: number;\n  intraLayerCount: number;\n  byPair: Record<string, number>;\n}\n\nexport interface ValidationInfo {\n  isValid: boolean;\n  lastValidated?: string;\n  errors: number;\n  warnings: number;\n}\n\nexport interface ModelStats {\n  project: {\n    name: string;\n    version: string;\n    created: string;\n    updated: string;\n  };\n  statistics: {\n    totalElements: number;\n    totalRelationships: number;\n    totalLayers: number;\n    populatedLayers: number;\n  };\n  validation: ValidationInfo;\n  layers: LayerStats[];\n  relationships: RelationshipStats;\n  completeness: {\n    overall: number; // 0-100\n    byLayer: Record<string, number>;\n  };\n  orphanedElements: string[];\n}\n\n/**\n * Collects statistics from a model\n */\nexport class StatsCollector {\n  constructor(private model: Model) {}\n\n  /**\n   * Collect all statistics from the model\n   */\n  async collect(): Promise<ModelStats> {\n    const layerStats = await this.collectLayerStats();\n    const relationshipStats = this.collectRelationshipStats();\n    const validationInfo = await this.collectValidationInfo();\n    const orphanedElements = await this.findOrphanedElements();\n\n    const totalElements = layerStats.reduce((sum, l) => sum + l.totalElements, 0);\n    const populatedLayers = layerStats.filter((l) => l.totalElements > 0).length;\n\n    const overallCompleteness = this.calculateCompleteness(layerStats);\n    const byLayerCompleteness: Record<string, number> = {};\n    for (const layer of layerStats) {\n      byLayerCompleteness[layer.name] = layer.coverage;\n    }\n\n    return {\n      project: {\n        name: this.model.manifest.name,\n        version: this.model.manifest.version,\n        created: this.model.manifest.created,\n        updated: this.model.manifest.modified,\n      },\n      statistics: {\n        totalElements,\n        totalRelationships: relationshipStats.total,\n        totalLayers: this.model.getLayerNames().length,\n        populatedLayers,\n      },\n      validation: validationInfo,\n      layers: layerStats,\n      relationships: relationshipStats,\n      completeness: {\n        overall: overallCompleteness,\n        byLayer: byLayerCompleteness,\n      },\n      orphanedElements,\n    };\n  }\n\n  /**\n   * Collect statistics for each layer\n   */\n  private async collectLayerStats(): Promise<LayerStats[]> {\n    const layerNames = this.model.getLayerNames();\n    const stats: LayerStats[] = [];\n\n    for (const layerName of layerNames) {\n      const layer = await this.model.getLayer(layerName);\n      if (!layer) continue;\n\n      const elements = layer.listElements();\n      const elementsByType: ElementTypeCount = {};\n\n      for (const element of elements) {\n        if (!elementsByType[element.type]) {\n          elementsByType[element.type] = 0;\n        }\n        elementsByType[element.type]++;\n      }\n\n      // Coverage is the percentage of element types used\n      // For now, we use a simple heuristic: if layer has elements, coverage = number of types / expected types\n      // This can be enhanced with layer schema information\n      const typeCount = Object.keys(elementsByType).length;\n      const expectedTypeCount = this.getExpectedTypeCount(layerName);\n      const coverage =\n        expectedTypeCount > 0 ? Math.min(100, (typeCount / expectedTypeCount) * 100) : 0;\n\n      stats.push({\n        name: layerName,\n        totalElements: elements.length,\n        elementsByType,\n        coverage: Math.round(coverage),\n      });\n    }\n\n    return stats;\n  }\n\n  /**\n   * Get expected element type count for a layer\n   * These are typical/common types for each layer\n   */\n  private getExpectedTypeCount(layerName: string): number {\n    const expectedTypes: Record<string, number> = {\n      motivation: 4, // goals, principles, requirements, stakeholders\n      business: 2, // capabilities, services\n      security: 4, // policies, threats, etc\n      application: 2, // services, components\n      technology: 4, // frameworks, libraries, databases, platforms\n      api: 2, // operations, endpoints\n      \"data-model\": 1, // entities/schemas\n      \"data-store\": 1, // datastores\n      ux: 2, // views, components\n      navigation: 2, // routes, menus\n      apm: 4, // metrics, analytics, collectors, etc\n      testing: 4, // test-suites, fixtures, strategies, coverage\n    };\n\n    return expectedTypes[layerName] || 2;\n  }\n\n  /**\n   * Collect relationship statistics\n   */\n  private collectRelationshipStats(): RelationshipStats {\n    const relationships = this.model.relationships.getAll();\n\n    const byPredicate: Record<string, number> = {};\n    const byPair: Record<string, number> = {};\n    let crossLayerCount = 0;\n    let intraLayerCount = 0;\n\n    for (const rel of relationships) {\n      // Count by predicate\n      if (!byPredicate[rel.predicate]) {\n        byPredicate[rel.predicate] = 0;\n      }\n      byPredicate[rel.predicate]++;\n\n      // Extract layers\n      const sourceLayer = rel.source.split(\".\")[0];\n      const targetLayer = rel.target.split(\".\")[0];\n\n      // Count cross vs intra-layer\n      if (sourceLayer === targetLayer) {\n        intraLayerCount++;\n      } else {\n        crossLayerCount++;\n      }\n\n      // Count by pair\n      const pair = `${sourceLayer}-${targetLayer}`;\n      if (!byPair[pair]) {\n        byPair[pair] = 0;\n      }\n      byPair[pair]++;\n    }\n\n    return {\n      total: relationships.length,\n      byPredicate,\n      crossLayerCount,\n      intraLayerCount,\n      byPair,\n    };\n  }\n\n  /**\n   * Collect validation information\n   * Runs model validation and returns actual validation status\n   * Preserves error details for debugging\n   */\n  private async collectValidationInfo(): Promise<ValidationInfo> {\n    try {\n      const validator = new Validator();\n      const result = await validator.validateModel(this.model);\n\n      return {\n        isValid: result.isValid(),\n        lastValidated: new Date().toISOString(),\n        errors: result.errors.length,\n        warnings: result.warnings.length,\n      };\n    } catch (error) {\n      // Preserve actual error information for debugging\n      const errorMessage = error instanceof Error ? error.message : String(error);\n      console.error(`[stats-collector] Validation failed: ${errorMessage}`);\n\n      // Return failed state with sentinel error count -1 indicating collection failure\n      // (cannot be confused with actual error count which is always >= 0)\n      return {\n        isValid: false,\n        lastValidated: new Date().toISOString(),\n        errors: -1, // Sentinel: validation collection itself failed\n        warnings: 0,\n      };\n    }\n  }\n\n  /**\n   * Find orphaned elements (elements with no relationships)\n   */\n  private async findOrphanedElements(): Promise<string[]> {\n    const orphaned: string[] = [];\n    const allRelationships = this.model.relationships.getAll();\n\n    // Get all element IDs\n    const allElements = new Set<string>();\n    const layerNames = this.model.getLayerNames();\n\n    for (const layerName of layerNames) {\n      const layer = await this.model.getLayer(layerName);\n      if (!layer) continue;\n\n      for (const element of layer.listElements()) {\n        allElements.add(element.path || element.id);\n      }\n    }\n\n    // Find elements with no relationships\n    const elementsWithRelationships = new Set<string>();\n    for (const rel of allRelationships) {\n      elementsWithRelationships.add(rel.source);\n      elementsWithRelationships.add(rel.target);\n    }\n\n    for (const elementId of allElements) {\n      if (!elementsWithRelationships.has(elementId)) {\n        orphaned.push(elementId);\n      }\n    }\n\n    return orphaned;\n  }\n\n  /**\n   * Calculate overall model completeness\n   * Weighted average of layer coverage\n   */\n  private calculateCompleteness(layerStats: LayerStats[]): number {\n    if (layerStats.length === 0) return 0;\n\n    const totalCoverage = layerStats.reduce((sum, layer) => sum + layer.coverage, 0);\n    return Math.round(totalCoverage / layerStats.length);\n  }\n}\n"],
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+  "sourcesContent": ["/**\n * Statistics collector for architecture models\n * Gathers metrics about elements, relationships, and model completeness\n */\n\nimport { Model } from \"./model.js\";\nimport { Validator } from \"../validators/validator.js\";\n\nexport interface ElementTypeCount {\n  [type: string]: number;\n}\n\nexport interface LayerStats {\n  name: string;\n  totalElements: number;\n  elementsByType: ElementTypeCount;\n  coverage: number; // Percentage of element types used (0-100)\n}\n\nexport interface RelationshipStats {\n  total: number;\n  byPredicate: Record<string, number>;\n  crossLayerCount: number;\n  intraLayerCount: number;\n  byPair: Record<string, number>;\n}\n\nexport interface ValidationInfo {\n  isValid: boolean;\n  lastValidated?: string;\n  errors: number;\n  warnings: number;\n}\n\nexport interface ModelStats {\n  project: {\n    name: string;\n    version: string;\n    created: string;\n    updated: string;\n  };\n  statistics: {\n    totalElements: number;\n    totalRelationships: number;\n    totalLayers: number;\n    populatedLayers: number;\n  };\n  validation: ValidationInfo;\n  layers: LayerStats[];\n  relationships: RelationshipStats;\n  completeness: {\n    overall: number; // 0-100\n    byLayer: Record<string, number>;\n  };\n  orphanedElements: string[];\n}\n\n/**\n * Collects statistics from a model\n */\nexport class StatsCollector {\n  constructor(private model: Model) {}\n\n  /**\n   * Collect all statistics from the model\n   */\n  async collect(): Promise<ModelStats> {\n    const layerStats = await this.collectLayerStats();\n    const relationshipStats = this.collectRelationshipStats();\n    const validationInfo = await this.collectValidationInfo();\n    const orphanedElements = await this.findOrphanedElements();\n\n    const totalElements = layerStats.reduce((sum, l) => sum + l.totalElements, 0);\n    const populatedLayers = layerStats.filter((l) => l.totalElements > 0).length;\n\n    const overallCompleteness = this.calculateCompleteness(layerStats);\n    const byLayerCompleteness: Record<string, number> = {};\n    for (const layer of layerStats) {\n      byLayerCompleteness[layer.name] = layer.coverage;\n    }\n\n    return {\n      project: {\n        name: this.model.manifest.name,\n        version: this.model.manifest.version,\n        created: this.model.manifest.created,\n        updated: this.model.manifest.modified,\n      },\n      statistics: {\n        totalElements,\n        totalRelationships: relationshipStats.total,\n        totalLayers: this.model.getLayerNames().length,\n        populatedLayers,\n      },\n      validation: validationInfo,\n      layers: layerStats,\n      relationships: relationshipStats,\n      completeness: {\n        overall: overallCompleteness,\n        byLayer: byLayerCompleteness,\n      },\n      orphanedElements,\n    };\n  }\n\n  /**\n   * Collect statistics for each layer\n   */\n  private async collectLayerStats(): Promise<LayerStats[]> {\n    const layerNames = this.model.getLayerNames();\n    const stats: LayerStats[] = [];\n\n    for (const layerName of layerNames) {\n      const layer = await this.model.getLayer(layerName);\n      if (!layer) continue;\n\n      const elements = layer.listElements();\n      const elementsByType: ElementTypeCount = {};\n\n      for (const element of elements) {\n        if (!elementsByType[element.type]) {\n          elementsByType[element.type] = 0;\n        }\n        elementsByType[element.type]++;\n      }\n\n      // Coverage is the percentage of element types used\n      // For now, we use a simple heuristic: if layer has elements, coverage = number of types / expected types\n      // This can be enhanced with layer schema information\n      const typeCount = Object.keys(elementsByType).length;\n      const expectedTypeCount = this.getExpectedTypeCount(layerName);\n      const coverage =\n        expectedTypeCount > 0 ? Math.min(100, (typeCount / expectedTypeCount) * 100) : 0;\n\n      stats.push({\n        name: layerName,\n        totalElements: elements.length,\n        elementsByType,\n        coverage: Math.round(coverage),\n      });\n    }\n\n    return stats;\n  }\n\n  /**\n   * Get expected element type count for a layer\n   * These are typical/common types for each layer\n   */\n  private getExpectedTypeCount(layerName: string): number {\n    const expectedTypes: Record<string, number> = {\n      motivation: 4, // goals, principles, requirements, stakeholders\n      business: 2, // capabilities, services\n      product: 5, // capabilities, features, milestones, personas, workflows\n      security: 4, // policies, threats, etc\n      application: 2, // services, components\n      technology: 4, // frameworks, libraries, databases, platforms\n      api: 2, // operations, endpoints\n      \"data-model\": 1, // entities/schemas\n      \"data-store\": 1, // datastores\n      ux: 2, // views, components\n      navigation: 2, // routes, menus\n      apm: 4, // metrics, analytics, collectors, etc\n      testing: 4, // test-suites, fixtures, strategies, coverage\n    };\n\n    return expectedTypes[layerName] || 2;\n  }\n\n  /**\n   * Collect relationship statistics\n   */\n  private collectRelationshipStats(): RelationshipStats {\n    const relationships = this.model.relationships.getAll();\n\n    const byPredicate: Record<string, number> = {};\n    const byPair: Record<string, number> = {};\n    let crossLayerCount = 0;\n    let intraLayerCount = 0;\n\n    for (const rel of relationships) {\n      // Count by predicate\n      if (!byPredicate[rel.predicate]) {\n        byPredicate[rel.predicate] = 0;\n      }\n      byPredicate[rel.predicate]++;\n\n      // Extract layers\n      const sourceLayer = rel.source.split(\".\")[0];\n      const targetLayer = rel.target.split(\".\")[0];\n\n      // Count cross vs intra-layer\n      if (sourceLayer === targetLayer) {\n        intraLayerCount++;\n      } else {\n        crossLayerCount++;\n      }\n\n      // Count by pair\n      const pair = `${sourceLayer}-${targetLayer}`;\n      if (!byPair[pair]) {\n        byPair[pair] = 0;\n      }\n      byPair[pair]++;\n    }\n\n    return {\n      total: relationships.length,\n      byPredicate,\n      crossLayerCount,\n      intraLayerCount,\n      byPair,\n    };\n  }\n\n  /**\n   * Collect validation information\n   * Runs model validation and returns actual validation status\n   * Preserves error details for debugging\n   */\n  private async collectValidationInfo(): Promise<ValidationInfo> {\n    try {\n      const validator = new Validator();\n      const result = await validator.validateModel(this.model);\n\n      return {\n        isValid: result.isValid(),\n        lastValidated: new Date().toISOString(),\n        errors: result.errors.length,\n        warnings: result.warnings.length,\n      };\n    } catch (error) {\n      // Preserve actual error information for debugging\n      const errorMessage = error instanceof Error ? error.message : String(error);\n      console.error(`[stats-collector] Validation failed: ${errorMessage}`);\n\n      // Return failed state with sentinel error count -1 indicating collection failure\n      // (cannot be confused with actual error count which is always >= 0)\n      return {\n        isValid: false,\n        lastValidated: new Date().toISOString(),\n        errors: -1, // Sentinel: validation collection itself failed\n        warnings: 0,\n      };\n    }\n  }\n\n  /**\n   * Find orphaned elements (elements with no relationships)\n   */\n  private async findOrphanedElements(): Promise<string[]> {\n    const orphaned: string[] = [];\n    const allRelationships = this.model.relationships.getAll();\n\n    // Get all element IDs\n    const allElements = new Set<string>();\n    const layerNames = this.model.getLayerNames();\n\n    for (const layerName of layerNames) {\n      const layer = await this.model.getLayer(layerName);\n      if (!layer) continue;\n\n      for (const element of layer.listElements()) {\n        allElements.add(element.path || element.id);\n      }\n    }\n\n    // Find elements with no relationships\n    const elementsWithRelationships = new Set<string>();\n    for (const rel of allRelationships) {\n      elementsWithRelationships.add(rel.source);\n      elementsWithRelationships.add(rel.target);\n    }\n\n    for (const elementId of allElements) {\n      if (!elementsWithRelationships.has(elementId)) {\n        orphaned.push(elementId);\n      }\n    }\n\n    return orphaned;\n  }\n\n  /**\n   * Calculate overall model completeness\n   * Weighted average of layer coverage\n   */\n  private calculateCompleteness(layerStats: LayerStats[]): number {\n    if (layerStats.length === 0) return 0;\n\n    const totalCoverage = layerStats.reduce((sum, layer) => sum + layer.coverage, 0);\n    return Math.round(totalCoverage / layerStats.length);\n  }\n}\n"],
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package/dist/export/archimate-exporter.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/export/archimate-exporter.ts"],
-  "sourcesContent": ["import type { Model } from \"../core/model.js\";\nimport type { Exporter, ExportOptions } from \"./types.js\";\nimport { escapeXml } from \"./types.js\";\nimport { isTelemetryEnabled, startSpan, endSpan } from \"../telemetry/index.js\";\nimport { getErrorMessage } from \"../utils/errors.js\";\n\n/**\n * ArchiMate XML Exporter for layers 1, 2, 4, 5\n * Generates valid ArchiMate 3.2 XML format\n */\nexport class ArchiMateExporter implements Exporter {\n  name = \"ArchiMate\";\n  supportedLayers = [\"motivation\", \"business\", \"application\", \"technology\"];\n\n  async export(model: Model, options: ExportOptions = {}): Promise<string> {\n    const span = isTelemetryEnabled\n      ? startSpan(\"export.format.archimate\", {\n          \"export.layerCount\": options.layers?.length || this.supportedLayers.length,\n        })\n      : null;\n\n    try {\n      const lines: string[] = [];\n\n      // XML declaration\n      lines.push('<?xml version=\"1.0\" encoding=\"UTF-8\"?>');\n\n      // Root element with namespaces\n      lines.push('<model xmlns=\"http://www.opengroup.org/xsd/archimate/3.0/\"');\n      lines.push('       xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"');\n      lines.push(\n        '       xsi:schemaLocation=\"http://www.opengroup.org/xsd/archimate/3.0/ http://www.opengroup.org/xsd/archimate/3.1/archimate3_Diagram.xsd\">'\n      );\n\n      // Model metadata\n      lines.push(`  <name>${escapeXml(model.manifest.name)}</name>`);\n      if (model.manifest.description) {\n        lines.push(`  <documentation>${escapeXml(model.manifest.description)}</documentation>`);\n      }\n\n      // Export elements - load from each layer directly\n      lines.push(\"  <elements>\");\n\n      const layersToExport = options.layers || this.supportedLayers;\n      const elementsByLayer: Array<{ layer: string; element: any }> = [];\n\n      // Load elements from each supported layer\n      for (const layerName of layersToExport) {\n        if (!this.supportedLayers.includes(layerName)) continue;\n\n        const layer = await model.getLayer(layerName);\n        if (!layer) continue;\n        const layerElements = layer.listElements();\n        for (const element of layerElements) {\n          elementsByLayer.push({ layer: layerName, element });\n        }\n      }\n\n      if (isTelemetryEnabled && span) {\n        (span as any).setAttribute(\"export.elementCount\", elementsByLayer.length);\n      }\n\n      for (const { layer, element } of elementsByLayer) {\n        const archiType = this.mapToArchiMateType(element.type, layer);\n        lines.push(`    <element identifier=\"${element.path}\" xsi:type=\"${archiType}\">`);\n        lines.push(`      <name>${escapeXml(element.name)}</name>`);\n\n        if (element.description) {\n          lines.push(`      <documentation>${escapeXml(element.description)}</documentation>`);\n        }\n\n        // Add properties section\n        lines.push(\"      <properties>\");\n\n        // Handle source_reference from element (if present)\n        if (element.source_reference) {\n          const flattenedProps = this.flattenSourceReference(element.source_reference);\n          for (const [flatKey, flatValue] of Object.entries(flattenedProps)) {\n            lines.push(\n              `        <property key=\"${escapeXml(flatKey)}\" value=\"${escapeXml(String(flatValue))}\" />`\n            );\n          }\n        }\n\n        // Add element attributes as properties\n        const attrKeys = Object.keys(element.attributes || {});\n        if (attrKeys.length > 0) {\n          for (const key of attrKeys) {\n            const val = element.attributes?.[key];\n            const strValue = this.valueToString(val);\n            lines.push(\n              `        <property key=\"${escapeXml(key)}\" value=\"${escapeXml(strValue)}\" />`\n            );\n          }\n        }\n\n        lines.push(\"      </properties>\");\n        lines.push(\"    </element>\");\n      }\n\n      lines.push(\"  </elements>\");\n\n      // Export relationships\n      lines.push(\"  <relationships>\");\n\n      let relationshipCount = 0;\n      const elementIds = new Set(elementsByLayer.map((e) => e.element.path));\n\n      // Filter relationships to those between exported elements\n      for (const rel of model.relationships.getAll()) {\n        if (!elementIds.has(rel.source) || !elementIds.has(rel.target)) {\n          continue;\n        }\n\n        const relId = this.escapeId(`${rel.source}-${rel.predicate}-${rel.target}`);\n        lines.push(`    <relationship identifier=\"${relId}\" `);\n        lines.push(`                  source=\"${rel.source}\" target=\"${rel.target}\" `);\n        lines.push(`                  xsi:type=\"Association\">`);\n        lines.push(`      <name>${rel.predicate}</name>`);\n        lines.push(`    </relationship>`);\n        relationshipCount++;\n      }\n\n      lines.push(\"  </relationships>\");\n      lines.push(\"</model>\");\n\n      const result = lines.join(\"\\n\");\n\n      if (isTelemetryEnabled && span) {\n        (span as any).setAttribute(\"export.relationshipCount\", relationshipCount);\n        (span as any).setAttribute(\"export.size\", result.length);\n        (span as any).setStatus({ code: 0 });\n      }\n\n      return result;\n    } catch (error) {\n      if (isTelemetryEnabled && span) {\n        (span as any).recordException(error as Error);\n        (span as any).setStatus({\n          code: 2,\n          message: getErrorMessage(error),\n        });\n      }\n      throw error;\n    } finally {\n      endSpan(span);\n    }\n  }\n\n  /**\n   * Map element type and layer to ArchiMate type\n   */\n  private mapToArchiMateType(type: string, layer: string): string {\n    const mapping: Record<string, Record<string, string>> = {\n      motivation: {\n        stakeholder: \"Stakeholder\",\n        driver: \"Driver\",\n        assessment: \"Assessment\",\n        goal: \"Goal\",\n        outcome: \"Outcome\",\n        principle: \"Principle\",\n        requirement: \"Requirement\",\n        constraint: \"Constraint\",\n        meaning: \"Meaning\",\n        value: \"Value\",\n      },\n      business: {\n        businessactor: \"BusinessActor\",\n        businessrole: \"BusinessRole\",\n        businesscollaboration: \"BusinessCollaboration\",\n        businessinterface: \"BusinessInterface\",\n        businessprocess: \"BusinessProcess\",\n        businessfunction: \"BusinessFunction\",\n        businessinteraction: \"BusinessInteraction\",\n        businessevent: \"BusinessEvent\",\n        businessservice: \"BusinessService\",\n        businessobject: \"BusinessObject\",\n        contract: \"Contract\",\n        product: \"Product\",\n        representation: \"Representation\",\n      },\n      application: {\n        applicationcomponent: \"ApplicationComponent\",\n        applicationcollaboration: \"ApplicationCollaboration\",\n        applicationinterface: \"ApplicationInterface\",\n        applicationfunction: \"ApplicationFunction\",\n        applicationinteraction: \"ApplicationInteraction\",\n        applicationprocess: \"ApplicationProcess\",\n        applicationevent: \"ApplicationEvent\",\n        applicationservice: \"ApplicationService\",\n        dataobject: \"DataObject\",\n      },\n      technology: {\n        node: \"Node\",\n        device: \"Device\",\n        systemsoftware: \"SystemSoftware\",\n        technologycollaboration: \"TechnologyCollaboration\",\n        technologyinterface: \"TechnologyInterface\",\n        path: \"Path\",\n        communicationnetwork: \"CommunicationNetwork\",\n        technologyfunction: \"TechnologyFunction\",\n        technologyprocess: \"TechnologyProcess\",\n        technologyinteraction: \"TechnologyInteraction\",\n        technologyevent: \"TechnologyEvent\",\n        technologyservice: \"TechnologyService\",\n        artifact: \"Artifact\",\n      },\n    };\n\n    return mapping[layer]?.[type] || \"Element\";\n  }\n\n  /**\n   * Escape ID characters for use in identifiers\n   */\n  private escapeId(str: string): string {\n    return str.replace(/[^a-zA-Z0-9_-]/g, \"_\");\n  }\n\n  /**\n   * Convert value to string representation\n   */\n  private valueToString(value: unknown): string {\n    if (typeof value === \"string\") return value;\n    if (typeof value === \"number\") return String(value);\n    if (typeof value === \"boolean\") return String(value);\n    if (Array.isArray(value)) return `[${value.map((v) => this.valueToString(v)).join(\", \")}]`;\n    if (value && typeof value === \"object\") {\n      return JSON.stringify(value);\n    }\n    return String(value);\n  }\n\n  /**\n   * Flatten source reference structure into ArchiMate properties\n   * Converts nested structure like { provenance: \"extracted\", locations: [...] }\n   * into flat properties like \"source.provenance\", 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repository info\n    if (sourceRef.repository) {\n      if (sourceRef.repository.url) {\n        props[\"source.repository.url\"] = sourceRef.repository.url;\n      }\n      if (sourceRef.repository.commit) {\n        props[\"source.repository.commit\"] = sourceRef.repository.commit;\n      }\n      if (sourceRef.repository.branch) {\n        props[\"source.repository.branch\"] = sourceRef.repository.branch;\n      }\n    }\n\n    return props;\n  }\n}\n"],
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+  "sourcesContent": ["import type { Model } from \"../core/model.js\";\nimport type { Exporter, ExportOptions } from \"./types.js\";\nimport { escapeXml } from \"./types.js\";\nimport { isTelemetryEnabled, startSpan, endSpan } from \"../telemetry/index.js\";\nimport { getErrorMessage } from \"../utils/errors.js\";\n\n/**\n * ArchiMate XML Exporter for layers 1, 2, 5, 6 (Motivation, Business, Application, Technology)\n * Generates valid ArchiMate 3.2 XML format\n * Note: Product layer (layer 3) does not participate in ArchiMate export\n */\nexport class ArchiMateExporter implements Exporter {\n  name = \"ArchiMate\";\n  supportedLayers = [\"motivation\", \"business\", \"application\", \"technology\"];\n\n  async export(model: Model, options: ExportOptions = {}): Promise<string> {\n    const span = isTelemetryEnabled\n      ? startSpan(\"export.format.archimate\", {\n          \"export.layerCount\": options.layers?.length || this.supportedLayers.length,\n        })\n      : null;\n\n    try {\n      const lines: string[] = [];\n\n      // XML declaration\n      lines.push('<?xml version=\"1.0\" encoding=\"UTF-8\"?>');\n\n      // Root element with namespaces\n      lines.push('<model xmlns=\"http://www.opengroup.org/xsd/archimate/3.0/\"');\n      lines.push('       xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"');\n      lines.push(\n        '       xsi:schemaLocation=\"http://www.opengroup.org/xsd/archimate/3.0/ http://www.opengroup.org/xsd/archimate/3.1/archimate3_Diagram.xsd\">'\n      );\n\n      // Model metadata\n      lines.push(`  <name>${escapeXml(model.manifest.name)}</name>`);\n      if (model.manifest.description) {\n        lines.push(`  <documentation>${escapeXml(model.manifest.description)}</documentation>`);\n      }\n\n      // Export elements - load from each layer directly\n      lines.push(\"  <elements>\");\n\n      const layersToExport = options.layers || this.supportedLayers;\n      const elementsByLayer: Array<{ layer: string; element: any }> = [];\n\n      // Load elements from each supported layer\n      for (const layerName of layersToExport) {\n        if (!this.supportedLayers.includes(layerName)) continue;\n\n        const layer = await model.getLayer(layerName);\n        if (!layer) continue;\n        const layerElements = layer.listElements();\n        for (const element of layerElements) {\n          elementsByLayer.push({ layer: layerName, element });\n        }\n      }\n\n      if (isTelemetryEnabled && span) {\n        (span as any).setAttribute(\"export.elementCount\", elementsByLayer.length);\n      }\n\n      for (const { layer, element } of elementsByLayer) {\n        const archiType = this.mapToArchiMateType(element.type, layer);\n        lines.push(`    <element identifier=\"${element.path}\" xsi:type=\"${archiType}\">`);\n        lines.push(`      <name>${escapeXml(element.name)}</name>`);\n\n        if (element.description) {\n          lines.push(`      <documentation>${escapeXml(element.description)}</documentation>`);\n        }\n\n        // Add properties section\n        lines.push(\"      <properties>\");\n\n        // Handle source_reference from element (if present)\n        if (element.source_reference) {\n          const flattenedProps = this.flattenSourceReference(element.source_reference);\n          for (const [flatKey, flatValue] of Object.entries(flattenedProps)) {\n            lines.push(\n              `        <property key=\"${escapeXml(flatKey)}\" value=\"${escapeXml(String(flatValue))}\" />`\n            );\n          }\n        }\n\n        // Add element attributes as properties\n        const attrKeys = Object.keys(element.attributes || {});\n        if (attrKeys.length > 0) {\n          for (const key of attrKeys) {\n            const val = element.attributes?.[key];\n            const strValue = this.valueToString(val);\n            lines.push(\n              `        <property key=\"${escapeXml(key)}\" value=\"${escapeXml(strValue)}\" />`\n            );\n          }\n        }\n\n        lines.push(\"      </properties>\");\n        lines.push(\"    </element>\");\n      }\n\n      lines.push(\"  </elements>\");\n\n      // Export relationships\n      lines.push(\"  <relationships>\");\n\n      let relationshipCount = 0;\n      const elementIds = new Set(elementsByLayer.map((e) => e.element.path));\n\n      // Filter relationships to those between exported elements\n      for (const rel of model.relationships.getAll()) {\n        if (!elementIds.has(rel.source) || !elementIds.has(rel.target)) {\n          continue;\n        }\n\n        const relId = this.escapeId(`${rel.source}-${rel.predicate}-${rel.target}`);\n        lines.push(`    <relationship identifier=\"${relId}\" `);\n        lines.push(`                  source=\"${rel.source}\" target=\"${rel.target}\" `);\n        lines.push(`                  xsi:type=\"Association\">`);\n        lines.push(`      <name>${rel.predicate}</name>`);\n        lines.push(`    </relationship>`);\n        relationshipCount++;\n      }\n\n      lines.push(\"  </relationships>\");\n      lines.push(\"</model>\");\n\n      const result = lines.join(\"\\n\");\n\n      if (isTelemetryEnabled && span) {\n        (span as any).setAttribute(\"export.relationshipCount\", relationshipCount);\n        (span as any).setAttribute(\"export.size\", result.length);\n        (span as any).setStatus({ code: 0 });\n      }\n\n      return result;\n    } catch (error) {\n      if (isTelemetryEnabled && span) {\n        (span as any).recordException(error as Error);\n        (span as any).setStatus({\n          code: 2,\n          message: getErrorMessage(error),\n        });\n      }\n      throw error;\n    } finally {\n      endSpan(span);\n    }\n  }\n\n  /**\n   * Map element type and layer to ArchiMate type\n   */\n  private mapToArchiMateType(type: string, layer: string): string {\n    const mapping: Record<string, Record<string, string>> = {\n      motivation: {\n        stakeholder: \"Stakeholder\",\n        driver: \"Driver\",\n        assessment: \"Assessment\",\n        goal: \"Goal\",\n        outcome: \"Outcome\",\n        principle: \"Principle\",\n        requirement: \"Requirement\",\n        constraint: \"Constraint\",\n        meaning: \"Meaning\",\n        value: \"Value\",\n      },\n      business: {\n        businessactor: \"BusinessActor\",\n        businessrole: \"BusinessRole\",\n        businesscollaboration: \"BusinessCollaboration\",\n        businessinterface: \"BusinessInterface\",\n        businessprocess: \"BusinessProcess\",\n        businessfunction: \"BusinessFunction\",\n        businessinteraction: \"BusinessInteraction\",\n        businessevent: \"BusinessEvent\",\n        businessservice: \"BusinessService\",\n        businessobject: \"BusinessObject\",\n        contract: \"Contract\",\n        product: \"Product\",\n        representation: \"Representation\",\n      },\n      application: {\n        applicationcomponent: \"ApplicationComponent\",\n        applicationcollaboration: \"ApplicationCollaboration\",\n        applicationinterface: \"ApplicationInterface\",\n        applicationfunction: \"ApplicationFunction\",\n        applicationinteraction: \"ApplicationInteraction\",\n        applicationprocess: \"ApplicationProcess\",\n        applicationevent: \"ApplicationEvent\",\n        applicationservice: \"ApplicationService\",\n        dataobject: \"DataObject\",\n      },\n      technology: {\n        node: \"Node\",\n        device: \"Device\",\n        systemsoftware: \"SystemSoftware\",\n        technologycollaboration: \"TechnologyCollaboration\",\n        technologyinterface: \"TechnologyInterface\",\n        path: \"Path\",\n        communicationnetwork: \"CommunicationNetwork\",\n        technologyfunction: \"TechnologyFunction\",\n        technologyprocess: \"TechnologyProcess\",\n        technologyinteraction: \"TechnologyInteraction\",\n        technologyevent: \"TechnologyEvent\",\n        technologyservice: \"TechnologyService\",\n        artifact: \"Artifact\",\n      },\n    };\n\n    return mapping[layer]?.[type] || \"Element\";\n  }\n\n  /**\n   * Escape ID characters for use in identifiers\n   */\n  private escapeId(str: string): string {\n    return str.replace(/[^a-zA-Z0-9_-]/g, \"_\");\n  }\n\n  /**\n   * Convert value to string representation\n   */\n  private valueToString(value: unknown): string {\n    if (typeof value === \"string\") return value;\n    if (typeof value === \"number\") return String(value);\n    if (typeof value === \"boolean\") return String(value);\n    if (Array.isArray(value)) return `[${value.map((v) => this.valueToString(v)).join(\", \")}]`;\n    if (value && typeof value === \"object\") {\n      return JSON.stringify(value);\n    }\n    return String(value);\n  }\n\n  /**\n   * Flatten source reference structure into ArchiMate properties\n   * Converts 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package/dist/export/json-schema-exporter.js.map

@@ -1,7 +1,7 @@
 {
   "version": 3,
   "sources": ["../../src/export/json-schema-exporter.ts"],
-  "sourcesContent": ["import type { Model } from \"../core/model.js\";\nimport type { Exporter, ExportOptions } from \"./types.js\";\nimport { isTelemetryEnabled, startSpan, endSpan } from \"../telemetry/index.js\";\nimport { getErrorMessage } from \"../utils/errors.js\";\n\n/**\n * JSON Schema Draft 7 Exporter for layer 7 (Data Model)\n */\nexport class JsonSchemaExporter implements Exporter {\n  name = \"JSON Schema\";\n  supportedLayers = [\"data-model\"];\n\n  async export(model: Model, _options: ExportOptions = {}): Promise<string> {\n    const span = isTelemetryEnabled ? startSpan(\"export.format.json-schema\") : null;\n\n    try {\n      // Query graph model for data-model layer nodes\n      const nodes = model.graph.getNodesByLayer(\"data-model\");\n      if (nodes.length === 0) {\n        throw new Error(\"No Data Model layer found in model\");\n      }\n\n      // Create a root schema that references all entities\n      const rootSchema: Record<string, unknown> = {\n        $schema: \"http://json-schema.org/draft-07/schema#\",\n        $id: `${model.manifest.name.toLowerCase().replace(/\\s+/g, \"-\")}-schema`,\n        title: model.manifest.name,\n        description: model.manifest.description || \"Data model schema\",\n        type: \"object\",\n        definitions: {},\n      };\n\n      // Map from spec node type to JSON Schema type for cases where the type\n      // is determined by the node kind rather than a stored attribute.\n      const nodeTypeToSchemaType: Record<string, string> = {\n        arrayschema: \"array\",\n        stringschema: \"string\",\n        numericschema: \"number\",\n        objectschema: \"object\",\n        entity: \"object\",\n      };\n\n      // Process all data-model nodes as JSON Schema definitions.\n      // The spec uses types: jsonschema, schemadefinition, objectschema, arrayschema,\n      // numericschema, stringschema, schemacomposition, schemaproperty, reference, entity.\n      for (const node of nodes) {\n        const entityName = node.name;\n        // GraphNode stores element attributes as a direct field (node.attributes),\n        // not nested under node.properties.\n        const attrs = node.attributes as Record<string, unknown> | undefined;\n        // 'properties' in JSON Schema context means the sub-schemas for object properties,\n        // stored in the element's attributes.properties field.\n        const properties = attrs?.properties as Record<string, unknown> | undefined;\n        const required = (attrs?.required as string[] | undefined) ?? (node.properties?.required as string[] | undefined);\n        const description = node.description;\n\n        // Derive JSON Schema type: prefer the value stored in the element's attributes\n        // (user-specified), then fall back to the node-type map, then \"object\".\n        const schemaType =\n          typeof attrs?.type === \"string\"\n            ? attrs.type\n            : (nodeTypeToSchemaType[node.type] ?? \"object\");\n\n        const entitySchema: Record<string, unknown> = {\n          title: entityName,\n          ...(description && { description }),\n          type: schemaType,\n          ...(properties && { properties }),\n          ...(required && { required }),\n        };\n\n        // Add additional metadata\n        const additionalProperties = attrs?.additionalProperties as boolean;\n        if (additionalProperties !== undefined) {\n          entitySchema.additionalProperties = additionalProperties;\n        }\n\n        // Add constraints if present\n        const constraints = attrs?.constraints as Record<string, unknown>;\n        if (constraints) {\n          Object.assign(entitySchema, constraints);\n        }\n\n        // Add source reference if present (check both naming conventions)\n        const sourceRef =\n          attrs?.[\"x-source-reference\"] || attrs?.[\"source-reference\"]\n          || node.source_reference;\n        if (sourceRef) {\n          entitySchema[\"x-source-reference\"] = sourceRef;\n        }\n\n        (rootSchema.definitions as Record<string, unknown>)[node.id] = entitySchema;\n      }\n\n      // Add relationships as references between entities - query graph edges\n      const relationships: Record<string, unknown> = {};\n      const edges = model.graph.getAllEdges();\n      const nodeIds = new Set(nodes.map((n) => n.id));\n\n      for (const edge of edges) {\n        // Only include edges where source is an entity in the data-model layer\n        if (nodeIds.has(edge.source) && nodeIds.has(edge.destination)) {\n          const relKey = `${edge.source}-${edge.predicate}`;\n          if (!relationships[relKey]) {\n            relationships[relKey] = [];\n          }\n          (relationships[relKey] as Array<{ target: string }>).push({\n            target: edge.destination,\n          });\n        }\n      }\n\n      if (Object.keys(relationships).length > 0) {\n        rootSchema.relationships = relationships;\n      }\n\n      // Add metadata section\n      const entityCount = nodes.length;\n      const metadata: Record<string, unknown> = {\n        version: model.manifest.version || \"1.0.0\",\n        ...(model.manifest.author && { author: model.manifest.author }),\n        ...(model.manifest.created && { created: model.manifest.created }),\n        ...(model.manifest.modified && { modified: model.manifest.modified }),\n        entityCount,\n      };\n      rootSchema.metadata = metadata;\n\n      const result = JSON.stringify(rootSchema, null, 2) + \"\\n\";\n\n      if (isTelemetryEnabled && span) {\n        (span as any).setAttribute(\n          \"export.entityCount\",\n          Object.keys(rootSchema.definitions || {}).length\n        );\n        (span as any).setAttribute(\"export.relationshipCount\", Object.keys(relationships).length);\n        (span as any).setAttribute(\"export.size\", result.length);\n        (span as any).setStatus({ code: 0 });\n      }\n\n      return result;\n    } catch (error) {\n      if (isTelemetryEnabled && span) {\n        (span as any).recordException(error as Error);\n        (span as any).setStatus({\n          code: 2,\n          message: getErrorMessage(error),\n        });\n      }\n      throw error;\n    } finally {\n      endSpan(span);\n    }\n  }\n}\n"],
+  "sourcesContent": ["import type { Model } from \"../core/model.js\";\nimport type { Exporter, ExportOptions } from \"./types.js\";\nimport { isTelemetryEnabled, startSpan, endSpan } from \"../telemetry/index.js\";\nimport { getErrorMessage } from \"../utils/errors.js\";\n\n/**\n * JSON Schema Draft 7 Exporter for layer 8 (Data Model)\n */\nexport class JsonSchemaExporter implements Exporter {\n  name = \"JSON Schema\";\n  supportedLayers = [\"data-model\"];\n\n  async export(model: Model, _options: ExportOptions = {}): Promise<string> {\n    const span = isTelemetryEnabled ? startSpan(\"export.format.json-schema\") : null;\n\n    try {\n      // Query graph model for data-model layer nodes\n      const nodes = model.graph.getNodesByLayer(\"data-model\");\n      if (nodes.length === 0) {\n        throw new Error(\"No Data Model layer found in model\");\n      }\n\n      // Create a root schema that references all entities\n      const rootSchema: Record<string, unknown> = {\n        $schema: \"http://json-schema.org/draft-07/schema#\",\n        $id: `${model.manifest.name.toLowerCase().replace(/\\s+/g, \"-\")}-schema`,\n        title: model.manifest.name,\n        description: model.manifest.description || \"Data model schema\",\n        type: \"object\",\n        definitions: {},\n      };\n\n      // Map from spec node type to JSON Schema type for cases where the type\n      // is determined by the node kind rather than a stored attribute.\n      const nodeTypeToSchemaType: Record<string, string> = {\n        arrayschema: \"array\",\n        stringschema: \"string\",\n        numericschema: \"number\",\n        objectschema: \"object\",\n        entity: \"object\",\n      };\n\n      // Process all data-model nodes as JSON Schema definitions.\n      // The spec uses types: jsonschema, schemadefinition, objectschema, arrayschema,\n      // numericschema, stringschema, schemacomposition, schemaproperty, reference, entity.\n      for (const node of nodes) {\n        const entityName = node.name;\n        // GraphNode stores element attributes as a direct field (node.attributes),\n        // not nested under node.properties.\n        const attrs = node.attributes as Record<string, unknown> | undefined;\n        // 'properties' in JSON Schema context means the sub-schemas for object properties,\n        // stored in the element's attributes.properties field.\n        const properties = attrs?.properties as Record<string, unknown> | undefined;\n        const required = (attrs?.required as string[] | undefined) ?? (node.properties?.required as string[] | undefined);\n        const description = node.description;\n\n        // Derive JSON Schema type: prefer the value stored in the element's attributes\n        // (user-specified), then fall back to the node-type map, then \"object\".\n        const schemaType =\n          typeof attrs?.type === \"string\"\n            ? attrs.type\n            : (nodeTypeToSchemaType[node.type] ?? \"object\");\n\n        const entitySchema: Record<string, unknown> = {\n          title: entityName,\n          ...(description && { description }),\n          type: schemaType,\n          ...(properties && { properties }),\n          ...(required && { required }),\n        };\n\n        // Add additional metadata\n        const additionalProperties = attrs?.additionalProperties as boolean;\n        if (additionalProperties !== undefined) {\n          entitySchema.additionalProperties = additionalProperties;\n        }\n\n        // Add constraints if present\n        const constraints = attrs?.constraints as Record<string, unknown>;\n        if (constraints) {\n          Object.assign(entitySchema, constraints);\n        }\n\n        // Add source reference if present (check both naming conventions)\n        const sourceRef =\n          attrs?.[\"x-source-reference\"] || attrs?.[\"source-reference\"]\n          || node.source_reference;\n        if (sourceRef) {\n          entitySchema[\"x-source-reference\"] = sourceRef;\n        }\n\n        (rootSchema.definitions as Record<string, unknown>)[node.id] = entitySchema;\n      }\n\n      // Add relationships as references between entities - query graph edges\n      const relationships: Record<string, unknown> = {};\n      const edges = model.graph.getAllEdges();\n      const nodeIds = new Set(nodes.map((n) => n.id));\n\n      for (const edge of edges) {\n        // Only include edges where source is an entity in the data-model layer\n        if (nodeIds.has(edge.source) && nodeIds.has(edge.destination)) {\n          const relKey = `${edge.source}-${edge.predicate}`;\n          if (!relationships[relKey]) {\n            relationships[relKey] = [];\n          }\n          (relationships[relKey] as Array<{ target: string }>).push({\n            target: edge.destination,\n          });\n        }\n      }\n\n      if (Object.keys(relationships).length > 0) {\n        rootSchema.relationships = relationships;\n      }\n\n      // Add metadata section\n      const entityCount = nodes.length;\n      const metadata: Record<string, unknown> = {\n        version: model.manifest.version || \"1.0.0\",\n        ...(model.manifest.author && { author: model.manifest.author }),\n        ...(model.manifest.created && { created: model.manifest.created }),\n        ...(model.manifest.modified && { modified: model.manifest.modified }),\n        entityCount,\n      };\n      rootSchema.metadata = metadata;\n\n      const result = JSON.stringify(rootSchema, null, 2) + \"\\n\";\n\n      if (isTelemetryEnabled && span) {\n        (span as any).setAttribute(\n          \"export.entityCount\",\n          Object.keys(rootSchema.definitions || {}).length\n        );\n        (span as any).setAttribute(\"export.relationshipCount\", Object.keys(relationships).length);\n        (span as any).setAttribute(\"export.size\", result.length);\n        (span as any).setStatus({ code: 0 });\n      }\n\n      return result;\n    } catch (error) {\n      if (isTelemetryEnabled && span) {\n        (span as any).recordException(error as Error);\n        (span as any).setStatus({\n          code: 2,\n          message: getErrorMessage(error),\n        });\n      }\n      throw error;\n    } finally {\n      endSpan(span);\n    }\n  }\n}\n"],
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