@djolex999/vir-cli 0.7.1 → 0.8.0

package/README.md

@@ -18,7 +18,7 @@ developer-tools, mcp, local-first, cross-platform, llm-wiki
   <a href="https://www.npmjs.com/package/@djolex999/vir-cli"><img src="https://img.shields.io/npm/v/@djolex999/vir-cli?color=7c6af7&label=npm" alt="npm version"></a>
   <a href="https://www.npmjs.com/package/@djolex999/vir-cli"><img src="https://img.shields.io/npm/dw/@djolex999/vir-cli?color=4fd1a0" alt="npm downloads"></a>
   <a href="LICENSE"><img src="https://img.shields.io/badge/license-MIT-22d3ee" alt="license"></a>
-  <a href="#project-status"><img src="https://img.shields.io/badge/tests-110%20passing-22c55e" alt="tests"></a>
+  <a href="#project-status"><img src="https://img.shields.io/badge/tests-147%20passing-22c55e" alt="tests"></a>
   <a href="#project-status"><img src="https://img.shields.io/badge/platforms-macOS%20%7C%20Linux-lightgrey" alt="platforms"></a>
   <a href="https://modelcontextprotocol.io"><img src="https://img.shields.io/badge/MCP-server-c084fc" alt="mcp"></a>
   <a href="#"><img src="https://img.shields.io/badge/local--first-yes-f59e0b" alt="local-first"></a>
@@ -71,8 +71,6 @@ Vir is actively developed. In the next 30–60 days:
 - **Obsidian plugin v1** — sidebar, command palette, canvas integration,
   submitted to the community plugin marketplace
 - **Multi-agent support** — Codex CLI, Cursor, Aider, Cline (one per release)
-- **Topic synthesis** — `vir compose` generates LLM Wiki-style topic pages that
-  merge insights across sessions
 - **PDF/paper ingestion** — broaden beyond developer workflows
 
 Track progress via [GitHub issues](https://github.com/djolex999/vir/issues) or
@@ -104,6 +102,10 @@ results, not better."_ Fair. Vir addresses it in layers:
 - **MMR-diverse retrieval**. Queries return notes covering different aspects of
   the topic, not 5 similar duplicates. The retrieval algorithm balances
   relevance against diversity automatically.
+- **Topic synthesis** via `vir compose "<topic>"`. Embedding-searches the vault
+  for related session notes and articles, then synthesizes them into a single
+  topic page under `topics/`, with each source wikilinked so it backlinks in
+  Obsidian's graph. `--dry-run` previews the sources and cost for free.
 - **Cost transparency.** `vir run --dry-run` estimates per-session cost _before_
   you spend a cent; `vir cost` reports the actuals (total, median, p90, top
   sessions) from a local `~/.vir/cost.log`; and `--force-model haiku|sonnet`
@@ -111,6 +113,14 @@ results, not better."_ Fair. Vir addresses it in layers:
   list rates + Kie's discount), so the numbers reflect _your_ bill — not a
   blended guess. Kie rates are approximate; override them in `config.pricing` if
   a report looks off.
+- **Reliable failures (v0.8.0).** Every command now exits non-zero on failure —
+  no more silent successes hiding broken distills. `vir reconcile --dry-run`
+  reports any pre-0.8.0 sessions that landed with empty content (e.g. via the
+  v0.7.1 Kie-200-with-body-error bug); `vir reconcile` retries them, bypassing
+  the SHA-256 processed-cache for just those rows. Retries that fail again
+  leave the row untouched so a second pass can catch them once the underlying
+  cause is fixed. Kie 404s carrying an `api_error` body envelope (transient
+  service hiccups) are now retried alongside 429/5xx.
 
 The bet: with these controls, signal-to-noise stays high enough that the vault
 is a net positive. If your discipline is strong enough to maintain `CLAUDE.md`
@@ -327,6 +337,8 @@ with your distro, init system, and Node version.
 | `vir cost --by-session`     | free  | Full per-session cost distribution        |
 | `vir query "<question>"`    | cheap | Semantic search your vault                |
 | `vir query … --json`        | cheap | Machine-readable results for tooling       |
+| `vir compose "<topic>"`     | $$    | Synthesize a topic page from related notes |
+| `vir compose … --dry-run`   | free  | Preview sources + cost, exit before LLM   |
 | `vir summarize <project>`   | cheap | Cross-session project synthesis           |
 | `vir summarize --all`       | $$    | Summarize all projects                    |
 | `vir lint`                  | cheap | Find orphans, stale notes, contradictions |
@@ -347,6 +359,8 @@ with your distro, init system, and Node version.
 | `vir status`                | free  | Knowledge heatmap + daemon status         |
 | `vir doctor`                | cheap | Diagnose installation issues              |
 | `vir doctor --json`         | cheap | Machine-readable install/health snapshot   |
+| `vir reconcile --dry-run`   | free  | Report sessions that silently failed pre-0.7.2 |
+| `vir reconcile`             | $$    | Retry those sessions — bypasses cache for them only |
 
 Both `vir query` and `vir doctor` accept `--json` for programmatic consumers
 (e.g. the [vir-obsidian](https://github.com/djolex999/vir) plugin). `query --json`
@@ -453,7 +467,7 @@ vault/vir/
 
 |                |                                           |
 | -------------- | ----------------------------------------- |
-| Tests          | 110 passing                               |
+| Tests          | 147 passing                               |
 | Platforms      | macOS (launchd), Linux (systemd/cron)     |
 | Node           | 20+                                       |
 | First-run cost | $1–5 (Kie.ai recommended for 72% savings) |

package/dist/cli/reconcile.js

@@ -0,0 +1,223 @@
+import chalk from "chalk";
+import { existsSync } from "node:fs";
+import { createInterface } from "node:readline/promises";
+import { stdin, stdout } from "node:process";
+import { readCostLog } from "../cost/log.js";
+import { computeCost } from "../cost/pricing.js";
+import { Distiller, normalizeModelName, resolveModelShorthand } from "../pipeline/distiller.js";
+import { scoreSession } from "../pipeline/filter.js";
+import { parseSession } from "../pipeline/parser.js";
+import { scrub } from "../pipeline/scrubber.js";
+import { filterToolCalls } from "../pipeline/toolCallFilter.js";
+import { VaultWriter } from "../pipeline/writer.js";
+import { deriveSessionId, StateDb } from "../state/db.js";
+import * as ui from "../ui/display.js";
+// Cost-estimate constants must stay in sync with run.ts's dry-run estimator —
+// transcripts tokenize denser than the chars/4 house heuristic, ~chars/3, and
+// classify/distill output medians come from real cost.log calibration.
+const CHARS_PER_TOKEN = 3;
+const CLASSIFY_OUTPUT_TOKENS = 350;
+const DISTILL_OUTPUT_TOKENS = 4500;
+// Pure selector for unit tests. Mirrors the SQL filter in
+// db.listReconcileTargets exactly: skipped=0 (we tried to distill) AND
+// content is null-or-empty (no usable output landed).
+//
+// Both shapes share one cause — pre-0.7.2 the Kie-200-with-body-error path
+// silently produced an empty distill string; errored runs landed as null.
+// Reconcile retries either.
+export function selectReconcileTargets(rows) {
+    return rows.filter((r) => r.skipped === 0 && (r.content === null || r.content === ""));
+}
+// Build the per-target summary (cost estimate + collateral flag) without doing
+// any network work. Used by both the dry-run report and the live confirmation.
+export function summarizeReconcileTargets(cfg, targets, costSessionIds, forceDistillModel) {
+    const classifyModel = normalizeModelName(cfg.models.classify, cfg.provider);
+    const distillModel = normalizeModelName(resolveModelShorthand(forceDistillModel ?? cfg.models.distill), cfg.provider);
+    let totalCost = 0;
+    let collateralCount = 0;
+    const rows = [];
+    for (const t of targets) {
+        const sessionId = deriveSessionId(t.path);
+        const hadCostRecord = costSessionIds.has(sessionId);
+        if (hadCostRecord)
+            collateralCount += 1;
+        let estimatedCost = 0;
+        if (existsSync(t.path)) {
+            try {
+                const parsed = parseSession(t.path, t.hash);
+                const classifyIn = Math.ceil(scrub(parsed.rawSummary).length / CHARS_PER_TOKEN);
+                const distillIn = Math.ceil(scrub(filterToolCalls(parsed.transcriptText, cfg.filterToolCalls).filtered).length / CHARS_PER_TOKEN);
+                estimatedCost =
+                    computeCost(cfg.provider, classifyModel, classifyIn, CLASSIFY_OUTPUT_TOKENS, cfg.pricing) +
+                        computeCost(cfg.provider, distillModel, distillIn, DISTILL_OUTPUT_TOKENS, cfg.pricing);
+            }
+            catch {
+                // Bad jsonl now — we'll still attempt retry, but skip the estimate.
+            }
+        }
+        totalCost += estimatedCost;
+        rows.push({
+            path: t.path,
+            sessionId,
+            hadCostRecord,
+            estimatedCost,
+        });
+    }
+    return { rows, totalCost, collateralCount };
+}
+async function confirmReconcile(targetCount, totalCost) {
+    ui.box([
+        `${ui.text(String(targetCount))} ${ui.dim("sessions to retry")}`,
+        `${ui.dim("estimated:")} ${ui.warn(ui.formatUsd(totalCost))}`,
+    ], { title: "reconcile cost estimate" });
+    const rl = createInterface({ input: stdin, output: stdout });
+    const ans = (await rl.question(ui.muted("continue? (y/n) ")))
+        .trim()
+        .toLowerCase();
+    rl.close();
+    return ans === "y" || ans === "yes";
+}
+export async function runReconcile(cfg, opts = {}) {
+    const db = new StateDb();
+    try {
+        ui.header(opts.dryRun ? "reconcile  --dry-run" : "reconcile");
+        ui.blank();
+        const targets = db.listReconcileTargets();
+        if (targets.length === 0) {
+            ui.row(ui.success(ui.CHECK), ui.text("nothing to reconcile — every session has content"));
+            return;
+        }
+        // Build the set of session IDs that already have any distill cost record,
+        // so we can report "false-cost collateral" — sessions we paid for but got
+        // no content from.
+        const costSessionIds = new Set();
+        for (const r of readCostLog()) {
+            if (r.stage === "distill" && r.session && r.estimated_cost_usd > 0) {
+                costSessionIds.add(r.session);
+            }
+        }
+        const { rows, totalCost, collateralCount } = summarizeReconcileTargets(cfg, targets, costSessionIds);
+        for (const r of rows) {
+            const id = r.sessionId.slice(0, 8);
+            const marker = r.hadCostRecord ? ui.warn("$") : ui.dim(" ");
+            ui.line(`  ${ui.dim(ui.BULLET)} ${marker} ${ui.text(id.padEnd(10))}  ${ui.dim(`est ${ui.formatUsd(r.estimatedCost)}`)}`);
+        }
+        ui.blank();
+        ui.divider();
+        ui.summary({
+            recoverable: { value: rows.length, color: ui.info },
+            "est. retry cost": { value: ui.formatUsd(totalCost), color: ui.warn },
+            "false-cost collateral": {
+                value: collateralCount,
+                color: collateralCount > 0 ? ui.warn : ui.dim,
+            },
+        });
+        ui.divider();
+        if (opts.dryRun) {
+            ui.line(ui.dim("  dry run — nothing retried. Collateral count = sessions we paid for but got no content from."));
+            return;
+        }
+        if (opts.yes !== true) {
+            const proceed = await confirmReconcile(rows.length, totalCost);
+            if (!proceed) {
+                ui.line(ui.dim("aborted"));
+                return;
+            }
+        }
+        const writer = new VaultWriter(cfg, db);
+        const distiller = new Distiller(cfg);
+        let recovered = 0;
+        let stillFailed = 0;
+        let missingFile = 0;
+        for (const t of targets) {
+            if (!existsSync(t.path)) {
+                missingFile += 1;
+                ui.row(ui.warn(ui.WARN_GLYPH), ui.text(`missing on disk — skipped: ${t.path.slice(-60)}`));
+                continue;
+            }
+            // Bypass the SHA-256 processed-cache check intentionally — these rows
+            // are cached but we know their stored content is empty, so we want a
+            // forced retry. Parse, score, distill, then update the row in place.
+            try {
+                const parsed = parseSession(t.path, t.hash);
+                const score = scoreSession(parsed, cfg.filterThreshold);
+                if (!score.passes) {
+                    // The filter rejects this now — record as skipped so a future
+                    // reconcile pass doesn't keep retrying it.
+                    db.record({
+                        path: t.path,
+                        hash: t.hash,
+                        skipped: true,
+                        notePaths: [],
+                    });
+                    continue;
+                }
+                const scrubbedSummary = scrub(parsed.rawSummary);
+                const toolFilter = filterToolCalls(parsed.transcriptText, cfg.filterToolCalls);
+                const scrubbedContent = scrub(toolFilter.filtered);
+                const note = await distiller.run(parsed, scrubbedSummary, scrubbedContent);
+                if (!note) {
+                    // Low confidence — record as skipped so we don't keep retrying.
+                    db.record({
+                        path: t.path,
+                        hash: t.hash,
+                        skipped: true,
+                        notePaths: [],
+                    });
+                    continue;
+                }
+                const written = await writer.write(parsed, note);
+                db.record({
+                    path: t.path,
+                    hash: t.hash,
+                    skipped: false,
+                    notePaths: written,
+                    content: note.markdown,
+                    category: note.classification.category,
+                    topic: note.classification.topic,
+                    project: note.classification.project,
+                    confidence: note.classification.confidence,
+                    startedAt: parsed.startedAt,
+                });
+                recovered += 1;
+                ui.categoryRow(note.classification.category, note.classification.topic);
+                // Same pacing as run.ts — let the provider breathe between calls.
+                await new Promise((r) => setTimeout(r, 2000));
+            }
+            catch (err) {
+                // A retry that fails again must leave the row as-is (content still
+                // null/empty) so the next reconcile pass can catch it. Do NOT mark
+                // it processed-with-empty.
+                stillFailed += 1;
+                const msg = err.message ?? String(err);
+                ui.row(ui.errorColor(ui.CROSS), ui.text(`retry failed: ${deriveSessionId(t.path).slice(0, 8)} — ${msg}`));
+            }
+        }
+        ui.blank();
+        ui.divider();
+        ui.summary({
+            recovered: { value: recovered, color: ui.success },
+            "still failed": {
+                value: stillFailed,
+                color: stillFailed > 0 ? ui.errorColor : ui.dim,
+            },
+            "missing file": {
+                value: missingFile,
+                color: missingFile > 0 ? ui.warn : ui.dim,
+            },
+        });
+        ui.divider();
+        // Surface "still failed" via a non-zero exit so the caller (or a CI
+        // harness running reconcile periodically) knows recovery is incomplete.
+        // The wrapper in cli.ts treats `process.exitCode = 1` as the failure
+        // signal; we DON'T throw because the partial recovery is real progress.
+        if (stillFailed > 0) {
+            process.exitCode = 1;
+            ui.line(chalk.dim(`  ${stillFailed} session(s) still failed — re-run \`vir reconcile\` after the underlying cause is fixed`));
+        }
+    }
+    finally {
+        db.close();
+    }
+}
+//# sourceMappingURL=reconcile.js.map

package/dist/cli/reconcile.js.map

@@ -0,0 +1 @@
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package/dist/cli/runAction.js

@@ -0,0 +1,19 @@
+import chalk from "chalk";
+export function runAction(fn, opts = {}) {
+    const logError = opts.logError ?? ((m) => console.error(chalk.red(m)));
+    return async (...args) => {
+        try {
+            await fn(...args);
+        }
+        catch (err) {
+            const msg = err instanceof Error
+                ? err.message
+                : typeof err === "string"
+                    ? err
+                    : JSON.stringify(err);
+            logError(msg);
+            process.exitCode = 1;
+        }
+    };
+}
+//# sourceMappingURL=runAction.js.map

package/dist/cli/runAction.js.map

@@ -0,0 +1 @@
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