@djolex999/vir-cli 0.4.1 → 0.6.0

package/README.md

@@ -18,7 +18,7 @@ developer-tools, mcp, local-first, cross-platform, llm-wiki
   <a href="https://www.npmjs.com/package/@djolex999/vir-cli"><img src="https://img.shields.io/npm/v/@djolex999/vir-cli?color=7c6af7&label=npm" alt="npm version"></a>
   <a href="https://www.npmjs.com/package/@djolex999/vir-cli"><img src="https://img.shields.io/npm/dw/@djolex999/vir-cli?color=4fd1a0" alt="npm downloads"></a>
   <a href="LICENSE"><img src="https://img.shields.io/badge/license-MIT-22d3ee" alt="license"></a>
-  <a href="#project-status"><img src="https://img.shields.io/badge/tests-50%20passing-22c55e" alt="tests"></a>
+  <a href="#project-status"><img src="https://img.shields.io/badge/tests-79%20passing-22c55e" alt="tests"></a>
   <a href="#project-status"><img src="https://img.shields.io/badge/platforms-macOS%20%7C%20Linux-lightgrey" alt="platforms"></a>
   <a href="https://modelcontextprotocol.io"><img src="https://img.shields.io/badge/MCP-server-c084fc" alt="mcp"></a>
   <a href="#"><img src="https://img.shields.io/badge/local--first-yes-f59e0b" alt="local-first"></a>
@@ -33,8 +33,12 @@ instead of resetting at the end of every session. He ended his post with: _"I
 think there is room here for an incredible new product instead of a hacky
 collection of scripts."_
 
-Vir is one implementation of that pattern, focused on Claude Code sessions with
-Obsidian as the frontend.
+Vir is one implementation of that pattern, with Obsidian as the frontend.
+
+> Vir reads two input sources today: Claude Code session transcripts (`.jsonl`)
+> and web articles (markdown clipped via Obsidian Web Clipper). Both get
+> distilled into the same vault. Future versions will add PDFs, code repos, and
+> images — matching the full LLM Wiki pattern.
 
 [Karpathy's post →](https://x.com/karpathy/status/2039805659525644595)
 
@@ -72,6 +76,10 @@ results, not better."_ Fair. Vir addresses it in layers:
   inspect.
 - **Lint and dedupe.** `vir lint` flags contradictions and stale notes;
   `vir dedupe` merges similar notes that have drifted apart.
+- **Active learning** via `vir review`. Walk through new distillations and
+  approve, edit, or reject each one. Verified notes get retrieval priority over
+  unverified ones (in `vir query` and the MCP server). Rejected notes are moved
+  to `.rejected/` — recoverable, not deleted.
 
 The bet: with these controls, signal-to-noise stays high enough that the vault
 is a net positive. If your discipline is strong enough to maintain `CLAUDE.md`
@@ -91,6 +99,13 @@ cross-linked with wikilinks and indexed. State lives in local SQLite; content
 hashes make reruns idempotent. Optional Ollama embeddings power semantic search,
 and an MCP server exposes the whole vault to Claude Code mid-session.
 
+Web articles saved to a `raw/` directory (e.g. via Obsidian Web Clipper) flow
+through a **parallel pipeline** with its own taxonomy — `concept`, `technique`,
+`reference`, `opinion` — filed under `articles/` in the same vault, embedded and
+indexed alongside session notes, and queryable through the same MCP tools.
+Articles always keep their source URL in frontmatter for backlinks; distillation
+paraphrases and never reproduces more than a short quote.
+
 ```
 Claude Code sessions
       ↓
@@ -191,11 +206,16 @@ npm install -g @djolex999/vir-cli
 ## Quick start
 
 ```bash
-vir init                 # guided wizard: provider, models, vault, cadence
+vir init                 # guided wizard: provider, models, vault, cadence,
+                         # and an optional web-articles (raw/) folder
 vir run                  # one pass over your sessions → notes in your vault
 vir schedule install     # register the daemon (runs every 3h by default)
 ```
 
+`vir init` asks whether you save web articles to a folder (e.g. Obsidian Web
+Clipper). Point it at that `raw/` directory and Vir distills those articles into
+the same vault. Leave it blank to keep Vir session-only.
+
 `vir schedule install` works on Linux too: systemd is preferred, with cron used
 as a fallback when `systemctl` isn't available.
 
@@ -238,6 +258,7 @@ with your distro, init system, and Node version.
 | `vir run`                   | cheap | Process new sessions                      |
 | `vir run --full`            | $$    | Reprocess all sessions                    |
 | `vir run --rewrite-only`    | free  | Reformat notes, no API calls              |
+| `vir run --articles-only`   | cheap | Distill only web articles, skip sessions  |
 | `vir run --yes`             | cheap | Skip cost confirmation                    |
 | `vir query "<question>"`    | cheap | Semantic search your vault                |
 | `vir summarize <project>`   | cheap | Cross-session project synthesis           |
@@ -247,6 +268,9 @@ with your distro, init system, and Node version.
 | `vir lint --stale`          | free  | Staleness check only                      |
 | `vir lint --contradictions` | cheap | Contradiction check (Haiku)               |
 | `vir dedupe`                | cheap | Interactive duplicate detection           |
+| `vir review`                | free  | Walk new notes: approve/edit/reject       |
+| `vir review --project <s>`  | free  | Review one project's notes                |
+| `vir review --all`          | free  | Re-review, including verified notes        |
 | `vir sync-claude`           | free  | Inject top knowledge into CLAUDE.md       |
 | `vir sync-claude --dry-run` | free  | Preview changes, no writes                |
 | `vir sync-claude --force`   | free  | Apply without confirmation                |
@@ -268,8 +292,13 @@ Register Vir with Claude Code:
 vir mcp install
 ```
 
-Restart Claude Code. The vault is now queryable mid-session via four tools:
-`vir_query`, `vir_status`, `vir_recent_notes`, `vir_project_summary`.
+Restart Claude Code. The vault is now queryable mid-session via five tools:
+`vir_query`, `vir_status`, `vir_recent_notes`, `vir_recent_articles`,
+`vir_project_summary`. `vir_query` takes a `type` filter
+(`session` | `article` | `all`) so Claude can scope a search to your dev
+sessions or your saved articles. Human-verified notes (approved via
+`vir review`) are ranked first; pass `verified_only: true` to `vir_query` or
+`vir_recent_notes` to see only those.
 
 To unregister:
 
@@ -310,6 +339,8 @@ Located at `~/.vir/config.json`.
 | `anthropicApiKey`   | —                           | Required if `provider=anthropic`                           |
 | `kieApiKey`         | —                           | Required if `provider=kie`                                 |
 | `filterThreshold`   | `0.4`                       | Heuristic pre-filter (0..1)                                |
+| `articlesDir`       | _(unset)_                   | `raw/` dir for web articles. Unset → article ingestion off |
+| `distillArticles`   | `true`                      | Distill articles alongside sessions (needs `articlesDir`)  |
 | `filterToolCalls`   | `moderate`                  | Tool-output filtering: `aggressive` \| `moderate` \| `off` |
 | `models.classify`   | `claude-haiku-4-5-20251001` | Classify model                                             |
 | `models.distill`    | `claude-sonnet-4-6`         | Distill model                                              |
@@ -324,6 +355,7 @@ vault/vir/
   gotchas/       # bugs, footguns, and edge cases
   decisions/     # architecture decisions with their rationale
   tools/         # per-tool knowledge and usage notes
+  articles/      # web articles distilled from your raw/ folder
   projects/      # cross-session project summaries
   archived/      # deduplicated notes (kept, never deleted)
 ```
@@ -340,7 +372,7 @@ vault/vir/
 
 |                |                                           |
 | -------------- | ----------------------------------------- |
-| Tests          | 50 passing                                |
+| Tests          | 79 passing                                |
 | Platforms      | macOS (launchd), Linux (systemd/cron)     |
 | Node           | 20+                                       |
 | First-run cost | $1–5 (Kie.ai recommended for 72% savings) |
@@ -349,7 +381,9 @@ vault/vir/
 ## Roadmap
 
 - [x] Linux support (systemd timer + cron fallback) — experimental
-- [ ] Active learning — `vir review` to approve, edit, or reject distillations, with verified notes prioritized in retrieval
+- [x] Active learning — `vir review` to approve, edit, or reject distillations, with verified notes prioritized in retrieval
+- [x] Web article ingestion — distill markdown clipped via Obsidian Web Clipper into the same vault (the LLM Wiki pivot)
+- [ ] More input sources — PDFs, code repos, images (the full LLM Wiki pattern)
 - [ ] Windows support
 - [ ] GUI installer for non-developers
 - [ ] Obsidian plugin for in-vault queries

package/dist/cli/review.js

@@ -0,0 +1,262 @@
+import { spawnSync } from "node:child_process";
+import { existsSync, mkdirSync, readFileSync, readdirSync, rmSync, writeFileSync, } from "node:fs";
+import { basename, join } from "node:path";
+import { stdin, stdout } from "node:process";
+import { createInterface } from "node:readline/promises";
+import { loadConfig } from "../config.js";
+import { kebab } from "../pipeline/writer.js";
+import * as ui from "../ui/display.js";
+// The four typed category dirs hold reviewable notes. `.rejected/`, `archived/`,
+// `projects/`, index.md and log.md are intentionally never walked.
+const CATEGORY_DIRS = ["patterns", "gotchas", "decisions", "tools"];
+const REJECTED_DIR = ".rejected";
+// Frontmatter is line-oriented `key: value`. Mirrors mcp/server.ts so review
+// reads notes the same way the rest of the codebase does — strips surrounding
+// quotes so a value like `topic: "x"` parses to `x`.
+export function parseFrontmatter(content) {
+    const m = content.match(/^---\n([\s\S]*?)\n---/);
+    const block = m?.[1];
+    if (block === undefined)
+        return {};
+    const out = {};
+    for (const line of block.split("\n")) {
+        const idx = line.indexOf(":");
+        if (idx === -1)
+            continue;
+        const key = line.slice(0, idx).trim();
+        if (key.length === 0)
+            continue;
+        let val = line.slice(idx + 1).trim();
+        if ((val.startsWith('"') && val.endsWith('"')) ||
+            (val.startsWith("'") && val.endsWith("'"))) {
+            val = val.slice(1, -1).replace(/\\"/g, '"');
+        }
+        out[key] = val;
+    }
+    return out;
+}
+// Upsert keys in the YAML frontmatter, preserving every other line (and the
+// whole body) verbatim. Existing keys are replaced in place; new keys are
+// appended just before the closing `---`. Values are written raw — callers
+// pass already-safe scalars (booleans, ISO dates).
+export function setFrontmatter(content, updates) {
+    const m = content.match(/^(---\n)([\s\S]*?)(\n---)/);
+    if (!m) {
+        const block = Object.entries(updates)
+            .map(([k, v]) => `${k}: ${v}`)
+            .join("\n");
+        return `---\n${block}\n---\n\n${content}`;
+    }
+    const remaining = { ...updates };
+    const lines = (m[2] ?? "").split("\n").map((line) => {
+        const idx = line.indexOf(":");
+        if (idx === -1)
+            return line;
+        const key = line.slice(0, idx).trim();
+        if (key in remaining) {
+            const val = remaining[key];
+            delete remaining[key];
+            return `${key}: ${val}`;
+        }
+        return line;
+    });
+    for (const [k, v] of Object.entries(remaining))
+        lines.push(`${k}: ${v}`);
+    return ((m[1] ?? "---\n") +
+        lines.join("\n") +
+        (m[3] ?? "\n---") +
+        content.slice((m.index ?? 0) + m[0].length));
+}
+// Approve: stamp verified + reviewed_at. Re-reads the file each call so it also
+// captures any edits made via $EDITOR immediately before approval.
+export function approveNote(filePath, now = new Date().toISOString()) {
+    const content = readFileSync(filePath, "utf8");
+    writeFileSync(filePath, setFrontmatter(content, { verified: "true", reviewed_at: now }));
+}
+// Reject: stamp rejected_at and move the note into `.rejected/` (recoverable,
+// never deleted). Returns the new path.
+export function rejectNote(filePath, vaultRoot, now = new Date().toISOString()) {
+    const content = readFileSync(filePath, "utf8");
+    const updated = setFrontmatter(content, { rejected_at: now });
+    const rejectedDir = join(vaultRoot, REJECTED_DIR);
+    if (!existsSync(rejectedDir))
+        mkdirSync(rejectedDir, { recursive: true });
+    const dest = join(rejectedDir, basename(filePath));
+    writeFileSync(dest, updated);
+    rmSync(filePath);
+    return dest;
+}
+// Walk the category dirs and return reviewable notes, newest first. Default
+// behavior hides verified notes (and `.rejected/` is never on the walk path);
+// `all` includes verified ones for re-review.
+export function collectNotes(vaultRoot, opts = {}) {
+    const projSlug = opts.project ? kebab(opts.project) : null;
+    const out = [];
+    for (const dir of CATEGORY_DIRS) {
+        const full = join(vaultRoot, dir);
+        if (!existsSync(full))
+            continue;
+        let names;
+        try {
+            names = readdirSync(full);
+        }
+        catch {
+            continue;
+        }
+        for (const name of names) {
+            if (!name.endsWith(".md"))
+                continue;
+            const filePath = join(full, name);
+            let content;
+            try {
+                content = readFileSync(filePath, "utf8");
+            }
+            catch {
+                continue;
+            }
+            const fm = parseFrontmatter(content);
+            const verified = fm.verified === "true";
+            if (!opts.all && verified)
+                continue;
+            if (projSlug && kebab(fm.project ?? "") !== projSlug)
+                continue;
+            out.push({
+                filePath,
+                relPath: join(dir, name),
+                topic: fm.topic ?? name.replace(/\.md$/, ""),
+                category: fm.category ?? dir.replace(/s$/, ""),
+                project: fm.project ?? "",
+                confidence: Number(fm.confidence ?? "0") || 0,
+                date: fm.date ?? "",
+                verified,
+            });
+        }
+    }
+    out.sort((a, b) => b.date.localeCompare(a.date));
+    if (opts.limit && opts.limit > 0)
+        return out.slice(0, opts.limit);
+    return out;
+}
+// Body sans frontmatter and the injected "Project:/Category:" wikilink header,
+// collapsed to a single paragraph for a compact preview.
+function excerpt(content) {
+    const body = content.replace(/^---\n[\s\S]*?\n---\n?/, "");
+    const lines = body.split("\n");
+    // Drop the leading wikilink header lines and any blank padding around them.
+    while (lines.length > 0) {
+        const first = (lines[0] ?? "").trim();
+        if (first === "" || /^(Project|Category):/.test(first)) {
+            lines.shift();
+            continue;
+        }
+        break;
+    }
+    return lines.join(" ").replace(/\s+/g, " ").trim();
+}
+// Opens the note in $EDITOR (or $VISUAL), falling back to nano. Synchronous so
+// the review loop blocks until the editor exits. Returns false if the editor
+// couldn't be launched at all.
+function openInEditor(filePath) {
+    const editor = process.env.EDITOR || process.env.VISUAL || "nano";
+    const res = spawnSync(editor, [filePath], { stdio: "inherit" });
+    return !res.error;
+}
+function renderNote(n, idx, total) {
+    const catColor = ui.colorForCategory[n.category] ?? ui.text;
+    ui.line(`${ui.dim(`[${idx + 1}/${total}]`)} ${ui.text(ui.shortNotePath(n.relPath))}`);
+    ui.line(`${catColor(n.category)}  ${ui.dim(ui.BULLET)}  ${ui.text(n.project || "—")}` +
+        `  ${ui.dim(ui.BULLET)}  ${ui.dim("conf")} ${ui.info(n.confidence.toFixed(2))}` +
+        (n.verified ? `  ${ui.dim(ui.BULLET)}  ${ui.success("verified")}` : ""));
+    ui.blank();
+    let body = "";
+    try {
+        body = excerpt(readFileSync(n.filePath, "utf8"));
+    }
+    catch {
+        body = "";
+    }
+    ui.line(ui.dim(ui.wrap(body.slice(0, 320), 64)));
+    ui.blank();
+}
+export async function runReview(opts) {
+    const cfg = loadConfig();
+    const vaultRoot = join(cfg.vaultPath, cfg.outputDir);
+    const parsedLimit = opts.limit ? Number.parseInt(opts.limit, 10) : 50;
+    const limit = Number.isFinite(parsedLimit) && parsedLimit > 0 ? parsedLimit : 50;
+    const notes = collectNotes(vaultRoot, {
+        all: opts.all,
+        project: opts.project,
+        limit,
+    });
+    ui.header("review");
+    ui.blank();
+    if (notes.length === 0) {
+        ui.row(ui.success(ui.CHECK), ui.text(opts.all
+            ? "no notes found to review"
+            : "no unreviewed notes — you're all caught up"));
+        return;
+    }
+    const scope = opts.project ? ` in ${opts.project}` : "";
+    ui.line(ui.dim(`Found ${notes.length} ${opts.all ? "" : "unreviewed "}note${notes.length === 1 ? "" : "s"}${scope}.`));
+    ui.blank();
+    const rl = createInterface({ input: stdin, output: stdout });
+    let approved = 0;
+    let edited = 0;
+    let rejected = 0;
+    let skipped = 0;
+    let quit = false;
+    try {
+        for (let i = 0; i < notes.length; i += 1) {
+            const n = notes[i];
+            if (!n)
+                continue;
+            ui.divider();
+            renderNote(n, i, notes.length);
+            const ans = (await rl.question(ui.muted("[a]pprove  [e]dit  [r]eject  [s]kip  [q]uit: ")))
+                .trim()
+                .toLowerCase();
+            if (ans === "a") {
+                approveNote(n.filePath);
+                approved += 1;
+                ui.row(ui.success(ui.CHECK), ui.text("approved"));
+            }
+            else if (ans === "e") {
+                rl.pause();
+                const launched = openInEditor(n.filePath);
+                rl.resume();
+                if (!launched) {
+                    ui.row(ui.warn(ui.WARN_GLYPH), ui.text("could not open editor — left unreviewed"));
+                    skipped += 1;
+                    continue;
+                }
+                approveNote(n.filePath);
+                edited += 1;
+                ui.row(ui.success(ui.CHECK), ui.text("edited + approved"));
+            }
+            else if (ans === "r") {
+                const dest = rejectNote(n.filePath, vaultRoot);
+                rejected += 1;
+                ui.row(ui.warn(ui.CROSS), ui.text(`rejected → ${ui.shortNotePath(dest)}`));
+            }
+            else if (ans === "q") {
+                quit = true;
+                break;
+            }
+            else {
+                // skip (explicit [s], empty, or any unrecognized key): no mutation.
+                skipped += 1;
+            }
+        }
+    }
+    finally {
+        rl.close();
+    }
+    const reviewed = approved + edited + rejected;
+    ui.blank();
+    ui.divider();
+    ui.line(ui.text(`Reviewed ${reviewed} note${reviewed === 1 ? "" : "s"}: ` +
+        `${approved} approved, ${edited} edited, ${rejected} rejected, ${skipped} skipped.` +
+        (quit ? ui.dim("  (quit early)") : "")));
+    ui.divider();
+}
+//# sourceMappingURL=review.js.map

package/dist/cli/review.js.map

@@ -0,0 +1 @@
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package/dist/cli.js

@@ -21,6 +21,7 @@ import { embeddingForNote, isOllamaAvailable, } from "./search/embedder.js";
 import { search } from "./search/retriever.js";
 import { synthesize } from "./search/synthesizer.js";
 import { runMcpServer } from "./mcp/server.js";
+import { runReview } from "./cli/review.js";
 import { installToClaudeCode, isClaudeAvailable, isInstalled, uninstallFromClaudeCode, } from "./mcp/install.js";
 import { install as installDaemon, status as daemonStatus, uninstall as uninstallDaemon, } from "./daemon/index.js";
 import { StateDb } from "./state/db.js";
@@ -48,17 +49,20 @@ program
     .option("--full", "Re-process all sessions, ignoring state cache")
     .option("--daemon", "Quiet output, write to daemon log file")
     .option("--rewrite-only", "Skip scan/filter/LLM; re-render stored notes from SQLite")
+    .option("--articles-only", "Distill only web articles, skip sessions")
     .option("--yes", "Skip the cost confirmation prompt")
     .action(async (opts) => {
     const cfg = loadConfig();
     const daemon = opts.daemon === true;
     const rewriteOnly = opts.rewriteOnly === true;
-    const skipPrompt = opts.yes === true || daemon || rewriteOnly;
+    const articlesOnly = opts.articlesOnly === true;
+    const skipPrompt = opts.yes === true || daemon || rewriteOnly || articlesOnly;
     await runPipeline(cfg, {
         full: opts.full,
         quiet: daemon,
         logToFile: daemon,
         rewriteOnly,
+        articlesOnly,
         onConfirm: skipPrompt
             ? undefined
             : async (newCount) => confirmCostIfNeeded(cfg, newCount),
@@ -492,6 +496,13 @@ program
     ui.blank();
     renderDaemon(ds, cfg.cadenceHours);
 });
+program
+    .command("review")
+    .description("Walk through new distilled notes and approve/edit/reject")
+    .option("--all", "Review all notes, including verified ones")
+    .option("--project <slug>", "Filter by project")
+    .option("--limit <n>", "Max notes to review in this session", "50")
+    .action(runReview);
 program
     .command("doctor")
     .description("Run diagnostic checks on Vir installation")
@@ -508,7 +519,8 @@ Quick start:
 After installing, restart Claude Code. Tools become available:
   vir_query            search the vault (synthesized answer + sources)
   vir_status           knowledge base overview + gaps
-  vir_recent_notes     most recently distilled notes
+  vir_recent_notes     most recently distilled session notes
+  vir_recent_articles  most recently distilled web articles
   vir_project_summary  synthesized per-project summary`);
 // Shared by `vir mcp run` and the bare `vir mcp` alias below.
 const runMcp = async () => {
@@ -676,6 +688,43 @@ async function cmdInit() {
         if (cont)
             break;
     }
+    // ── web articles (optional second input source) ─────────────────────────
+    let articlesDir = existing?.articlesDir;
+    const wantsArticles = await confirm({
+        message: "Do you save web articles to a folder (e.g. Obsidian Web Clipper)?",
+        default: existing?.articlesDir !== undefined,
+    });
+    if (wantsArticles) {
+        for (;;) {
+            articlesDir = await input({
+                message: "Articles (raw/) directory",
+                default: existing?.articlesDir ??
+                    join(homedir(), "Documents", "Obsidian", "raw"),
+            });
+            const expanded = expandHome(articlesDir);
+            if (existsSync(expanded))
+                break;
+            const create = await confirm({
+                message: `Path does not exist (${expanded}). Create it?`,
+                default: true,
+            });
+            if (create) {
+                try {
+                    mkdirSync(expanded, { recursive: true });
+                    break;
+                }
+                catch (err) {
+                    console.error(chalk.red(`failed to create: ${err.message}`));
+                }
+            }
+            else {
+                break;
+            }
+        }
+    }
+    else {
+        articlesDir = undefined;
+    }
     const cadenceHours = Number(await input({
         message: "Cadence (hours)",
         default: String(existing?.cadenceHours ?? 3),
@@ -779,6 +828,8 @@ async function cmdInit() {
         anthropicApiKey,
         kieApiKey,
         filterThreshold,
+        articlesDir,
+        distillArticles: existing?.distillArticles,
         filterToolCalls: existing?.filterToolCalls,
         models: { classify: classifyModel, distill: distillModel },
     });