npm - @djolex999/vir-cli - Versions diffs - 0.3.4 → 0.4.0 - Mend

@djolex999/vir-cli 0.3.4 → 0.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (24) hide show

package/README.md +10 -4
package/dist/cli.js +1 -0
package/dist/cli.js.map +1 -1
package/dist/config.js +29 -1
package/dist/config.js.map +1 -1
package/dist/daemon/cron.js +10 -1
package/dist/daemon/cron.js.map +1 -1
package/dist/daemon/systemd.js +7 -1
package/dist/daemon/systemd.js.map +1 -1
package/dist/diagnostics/doctor.js +10 -15
package/dist/diagnostics/doctor.js.map +1 -1
package/dist/mcp/server.js +9 -17
package/dist/mcp/server.js.map +1 -1
package/dist/pipeline/distiller.js +6 -1
package/dist/pipeline/distiller.js.map +1 -1
package/dist/pipeline/parser.js +46 -0
package/dist/pipeline/parser.js.map +1 -1
package/dist/pipeline/run.js +19 -2
package/dist/pipeline/run.js.map +1 -1
package/dist/pipeline/toolCallFilter.js +136 -0
package/dist/pipeline/toolCallFilter.js.map +1 -0
package/dist/pipeline/writer.js +39 -14
package/dist/pipeline/writer.js.map +1 -1
package/package.json +2 -2

package/README.md CHANGED Viewed

@@ -42,7 +42,12 @@ future session starts sharper than the last.
 Vir reads your Claude Code transcripts from `~/.claude/projects/**/*.jsonl`,
 runs each session through a cheap heuristic filter, then classifies the
-survivors with Haiku and distills durable knowledge with Sonnet. The results are
+survivors with Haiku and distills durable knowledge with Sonnet. Before
+distillation, **tool calls are filtered**: it preserves tool *intent* (file
+paths, commands, search patterns, errors, and short results) for better notes,
+while truncating large embedded content (file writes, edit strings, long bash
+logs, big grep dumps) to keep token cost bounded — tunable via `filterToolCalls`.
+The results are
 written as typed notes (patterns, gotchas, decisions, tools) into your Obsidian
 vault, cross-linked with wikilinks and indexed. State lives in a local SQLite
 database — content hashes make reruns idempotent, and embeddings (optional, via
@@ -117,7 +122,7 @@ sources 4  ·  via embedding  ·  searched 126
 ## Prerequisites
 - macOS or Linux (systemd or cron)
-- Node.js 18+
+- Node.js 20+
 - Claude Code (sessions at `~/.claude/projects/`)
 - Obsidian vault
 - Anthropic API key **or** Kie.ai API key (~72% cheaper, same models)
@@ -202,9 +207,9 @@ with your distro, init system, and Node version.
 | | |
 |---|---|
-| Tests | 25 passing |
+| Tests | 30 passing |
 | Platforms | macOS (launchd), Linux (systemd/cron) |
-| Node | 18+ |
+| Node | 20+ |
 | First-run cost | $1–5 (Kie.ai recommended for 72% savings) |
 | Ongoing cost | ~$0.05 per run |
@@ -261,6 +266,7 @@ Located at `~/.vir/config.json`.
 | `anthropicApiKey` | — | Required if `provider=anthropic` |
 | `kieApiKey` | — | Required if `provider=kie` |
 | `filterThreshold` | `0.4` | Heuristic pre-filter (0..1) |
+| `filterToolCalls` | `moderate` | Tool-output filtering: `aggressive` \| `moderate` \| `off` |
 | `models.classify` | `claude-haiku-4-5-20251001` | Classify model |
 | `models.distill` | `claude-sonnet-4-6` | Distill model |

package/dist/cli.js CHANGED Viewed

@@ -779,6 +779,7 @@ async function cmdInit() {
         anthropicApiKey,
         kieApiKey,
         filterThreshold,
+        filterToolCalls: existing?.filterToolCalls,
         models: { classify: classifyModel, distill: distillModel },
     });
     if (!parsed.success) {

package/dist/cli.js.map CHANGED Viewed

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package/dist/config.js CHANGED Viewed

@@ -1,4 +1,4 @@
-import { existsSync, mkdirSync, readFileSync, writeFileSync } from "node:fs";
+import { chmodSync, existsSync, mkdirSync, readFileSync, statSync, writeFileSync, } from "node:fs";
 import { homedir } from "node:os";
 import { dirname, join } from "node:path";
 import { z } from "zod";
@@ -12,6 +12,11 @@ export const ConfigSchema = z
     anthropicApiKey: z.string().optional(),
     kieApiKey: z.string().optional(),
     filterThreshold: z.number().min(0).max(1).default(0.4),
+    // How aggressively large tool outputs are stripped before distillation.
+    // Existing configs without this field get 'moderate' via the default.
+    filterToolCalls: z
+        .enum(["aggressive", "moderate", "off"])
+        .default("moderate"),
     models: z
         .object({
         classify: z.string().default("claude-haiku-4-5-20251001"),
@@ -56,6 +61,13 @@ export function expandHome(p) {
 export function ensureVirDir() {
     if (!existsSync(VIR_DIR))
         mkdirSync(VIR_DIR, { recursive: true });
+    // The dir holds config.json with API keys — keep it owner-only.
+    try {
+        chmodSync(VIR_DIR, 0o700);
+    }
+    catch {
+        // best-effort (e.g. exotic filesystems); never block on a chmod
+    }
 }
 export function configExists() {
     return existsSync(CONFIG_PATH);
@@ -64,6 +76,15 @@ export function loadConfig() {
     if (!existsSync(CONFIG_PATH)) {
         throw new Error(`Config not found at ${CONFIG_PATH}. Run \`vir init\` first.`);
     }
+    // Migrate pre-0.3.5 installs whose config.json is group/world-readable —
+    // it holds API keys, so tighten to 0600 silently. Best-effort.
+    try {
+        if (statSync(CONFIG_PATH).mode & 0o077)
+            chmodSync(CONFIG_PATH, 0o600);
+    }
+    catch {
+        // ignore — a failed chmod must never block loading config
+    }
     const raw = readFileSync(CONFIG_PATH, "utf8");
     const parsed = ConfigSchema.parse(JSON.parse(raw));
     return {
@@ -78,5 +99,12 @@ export function saveConfig(cfg) {
         mkdirSync(dirname(CONFIG_PATH), { recursive: true });
     }
     writeFileSync(CONFIG_PATH, JSON.stringify(cfg, null, 2));
+    // config.json contains API keys — owner read/write only.
+    try {
+        chmodSync(CONFIG_PATH, 0o600);
+    }
+    catch {
+        // best-effort; a failed chmod must not fail the save
+    }
 }
 //# sourceMappingURL=config.js.map

package/dist/config.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/daemon/cron.js CHANGED Viewed

@@ -13,6 +13,12 @@ export function generateCronLine(cadenceHours, command) {
     const h = cronHourInterval(cadenceHours);
     return `0 */${h} * * * ${command} ${VIR_CRON_MARKER}`;
 }
+// POSIX-shell single-quote a path so spaces/special chars in node/cli/log paths
+// survive crontab's `/bin/sh -c` execution. Embedded single quotes close, escape,
+// reopen ('\'').
+export function shellQuote(s) {
+    return `'${s.replace(/'/g, "'\\''")}'`;
+}
 export function parseCronCadence(line) {
     // Hour field is the second whitespace-delimited token; expect "*/N".
     const fields = line.trim().split(/\s+/);
@@ -52,7 +58,10 @@ function writeCrontab(content) {
     }
 }
 export function install(opts) {
-    const command = `${opts.nodePath} ${opts.cliPath} run --yes >> ${DAEMON_LOG_PATH} 2>&1`;
+    // --daemon gives quiet output + file logging; the redirect still captures any
+    // stderr/crash output cron would otherwise mail to the user.
+    const command = `${shellQuote(opts.nodePath)} ${shellQuote(opts.cliPath)} run --daemon ` +
+        `>> ${shellQuote(DAEMON_LOG_PATH)} 2>&1`;
     const line = generateCronLine(opts.cadenceHours, command);
     const cleaned = removeVirLines(readCrontab());
     writeCrontab(appendLine(cleaned, line));

package/dist/daemon/cron.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/daemon/systemd.js CHANGED Viewed

@@ -44,6 +44,12 @@ function systemctl(args) {
         stderr: res.stderr ?? "",
     };
 }
+// systemd splits ExecStart on whitespace; double-quote each path so spaces
+// survive, escaping embedded backslashes and quotes per systemd's own rules
+// (NOT shell rules — systemd parses the unit, no shell is involved).
+export function systemdQuote(s) {
+    return `"${s.replace(/\\/g, "\\\\").replace(/"/g, '\\"')}"`;
+}
 // %h is systemd's user-home specifier — keeps the unit portable across users.
 export function renderService(opts) {
     return `[Unit]
@@ -51,7 +57,7 @@ Description=Vir Claude Code session distillation
 [Service]
 Type=oneshot
-ExecStart=${opts.nodePath} ${opts.cliPath} run --yes
+ExecStart=${systemdQuote(opts.nodePath)} ${systemdQuote(opts.cliPath)} run --daemon
 StandardOutput=append:%h/.vir/daemon.log
 StandardError=append:%h/.vir/daemon.log
 `;

package/dist/daemon/systemd.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"systemd.js","sourceRoot":"","sources":["../../src/daemon/systemd.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAC/C,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,YAAY,EAAE,MAAM,EAAE,aAAa,EAAE,MAAM,SAAS,CAAC;AACrF,OAAO,EAAE,OAAO,EAAE,MAAM,SAAS,CAAC;AAClC,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,sEAAsE;AACtE,2CAA2C;AAC3C,MAAM,OAAO,wBAAyB,SAAQ,KAAK;IACjD;QACE,KAAK,CAAC,qBAAqB,CAAC,CAAC;QAC7B,IAAI,CAAC,IAAI,GAAG,0BAA0B,CAAC;IACzC,CAAC;CACF;AAED,6EAA6E;AAC7E,gFAAgF;AAChF,0EAA0E;AAC1E,0BAA0B;AAC1B,MAAM,OAAO,8BAA+B,SAAQ,KAAK;IACvD;QACE,KAAK,CAAC,gCAAgC,CAAC,CAAC;QACxC,IAAI,CAAC,IAAI,GAAG,gCAAgC,CAAC;IAC/C,CAAC;CACF;AAED,+EAA+E;AAC/E,yEAAyE;AACzE,+EAA+E;AAC/E,uEAAuE;AACvE,kDAAkD;AAClD,MAAM,UAAU,oBAAoB,CAAC,KAIpC;IACC,OAAO,6BAA6B,CAAC,IAAI,CAAC,GAAG,KAAK,CAAC,MAAM,KAAK,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;AAChF,CAAC;AAED,oDAAoD;AACpD,MAAM,gBAAgB,GAAG,IAAI,CAAC,OAAO,EAAE,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;AACvE,MAAM,YAAY,GAAG,IAAI,CAAC,gBAAgB,EAAE,aAAa,CAAC,CAAC;AAC3D,MAAM,UAAU,GAAG,IAAI,CAAC,gBAAgB,EAAE,WAAW,CAAC,CAAC;AACvD,MAAM,UAAU,GAAG,WAAW,CAAC;AAe/B,MAAM,UAAU,kBAAkB;IAChC,OAAO,SAAS,CAAC,OAAO,EAAE,CAAC,WAAW,CAAC,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC;AAC9E,CAAC;AAED,SAAS,SAAS,CAAC,IAAc;IAK/B,MAAM,GAAG,GAAG,SAAS,CAAC,WAAW,EAAE,IAAI,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;IAC/D,OAAO;QACL,IAAI,EAAE,GAAG,CAAC,MAAM,IAAI,CAAC,CAAC;QACtB,MAAM,EAAE,GAAG,CAAC,MAAM,IAAI,EAAE;QACxB,MAAM,EAAE,GAAG,CAAC,MAAM,IAAI,EAAE;KACzB,CAAC;AACJ,CAAC;AAED,2EAA2E;AAC3E,4EAA4E;AAC5E,qEAAqE;AACrE,MAAM,UAAU,YAAY,CAAC,CAAS;IACpC,OAAO,IAAI,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC;AAC9D,CAAC;AAED,8EAA8E;AAC9E,MAAM,UAAU,aAAa,CAAC,IAG7B;IACC,OAAO;;;;;YAKG,YAAY,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC;;;CAGpE,CAAC;AACF,CAAC;AAED,MAAM,UAAU,WAAW,CAAC,YAAoB;IAC9C,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC;IAChD,OAAO;4BACmB,CAAC;;;;kBAIX,CAAC;;;;CAIlB,CAAC;AACF,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,KAAa;IAC7C,MAAM,CAAC,GAAG,KAAK,CAAC,KAAK,CAAC,wBAAwB,CAAC,CAAC;IAChD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;AACzC,CAAC;AAED,8EAA8E;AAC9E,6EAA6E;AAC7E,8EAA8E;AAC9E,SAAS,sBAAsB,CAC7B,EAAU,EACV,GAAqD;IAErD,IAAI,oBAAoB,CAAC,GAAG,CAAC;QAAE,OAAO,IAAI,8BAA8B,EAAE,CAAC;IAC3E,OAAO,IAAI,KAAK,CAAC,aAAa,EAAE,YAAY,GAAG,CAAC,MAAM,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;AACnE,CAAC;AAED,SAAS,eAAe;IACtB,IAAI,UAAU,CAAC,YAAY,CAAC;QAAE,MAAM,CAAC,YAAY,CAAC,CAAC;IACnD,IAAI,UAAU,CAAC,UAAU,CAAC;QAAE,MAAM,CAAC,UAAU,CAAC,CAAC;AACjD,CAAC;AAED,MAAM,UAAU,OAAO,CAAC,IAAiB;IACvC,IAAI,CAAC,kBAAkB,EAAE;QAAE,MAAM,IAAI,wBAAwB,EAAE,CAAC;IAEhE,mEAAmE;IACnE,0EAA0E;IAC1E,6BAA6B;IAC7B,MAAM,KAAK,GAAG,SAAS,CAAC,CAAC,QAAQ,EAAE,mBAAmB,CAAC,CAAC,CAAC;IACzD,IAAI,oBAAoB,CAAC,KAAK,CAAC;QAAE,MAAM,IAAI,8BAA8B,EAAE,CAAC;IAE5E,IAAI,CAAC,UAAU,CAAC,gBAAgB,CAAC,EAAE,CAAC;QAClC,SAAS,CAAC,gBAAgB,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IACnD,CAAC;IACD,IAAI,CAAC;QACH,aAAa,CACX,YAAY,EACZ,aAAa,CAAC,EAAE,QAAQ,EAAE,IAAI,CAAC,QAAQ,EAAE,OAAO,EAAE,IAAI,CAAC,OAAO,EAAE,CAAC,CAClE,CAAC;QACF,aAAa,CAAC,UAAU,EAAE,WAAW,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC;QAE1D,MAAM,MAAM,GAAG,SAAS,CAAC,CAAC,QAAQ,EAAE,eAAe,CAAC,CAAC,CAAC;QACtD,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC;YAAE,MAAM,sBAAsB,CAAC,eAAe,EAAE,MAAM,CAAC,CAAC;QAC7E,MAAM,MAAM,GAAG,SAAS,CAAC,CAAC,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,UAAU,CAAC,CAAC,CAAC;QACpE,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC;YAAE,MAAM,sBAAsB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;IACxE,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,2EAA2E;QAC3E,qEAAqE;QACrE,eAAe,EAAE,CAAC;QAClB,MAAM,GAAG,CAAC;IACZ,CAAC;AACH,CAAC;AAED,MAAM,UAAU,SAAS;IACvB,IAAI,CAAC,kBAAkB,EAAE;QAAE,OAAO;IAClC,SAAS,CAAC,CAAC,QAAQ,EAAE,SAAS,EAAE,OAAO,EAAE,UAAU,CAAC,CAAC,CAAC;IACtD,eAAe,EAAE,CAAC;IAClB,SAAS,CAAC,CAAC,QAAQ,EAAE,eAAe,CAAC,CAAC,CAAC;AACzC,CAAC;AAED,MAAM,UAAU,MAAM;IACpB,IAAI,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;QAC5B,OAAO,EAAE,SAAS,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,YAAY,EAAE,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC;IACnF,CAAC;IACD,MAAM,QAAQ,GAAG,SAAS,CAAC,CAAC,QAAQ,EAAE,WAAW,EAAE,UAAU,CAAC,CAAC,CAAC;IAChE,IAAI,YAAY,GAAkB,IAAI,CAAC;IACvC,IAAI,CAAC;QACH,YAAY,GAAG,iBAAiB,CAAC,YAAY,CAAC,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC;IACrE,CAAC;IAAC,MAAM,CAAC;QACP,wCAAwC;IAC1C,CAAC;IACD,OAAO;QACL,SAAS,EAAE,IAAI;QACf,MAAM,EAAE,QAAQ,CAAC,MAAM,CAAC,IAAI,EAAE,KAAK,QAAQ;QAC3C,YAAY;QACZ,UAAU,EAAE,UAAU;KACvB,CAAC;AACJ,CAAC"}

package/dist/diagnostics/doctor.js CHANGED Viewed

@@ -13,7 +13,6 @@ import { join } from "node:path";
 import { readFileSync } from "node:fs";
 import { CONFIG_PATH, ConfigSchema, STATE_PATH, expandHome, } from "../config.js";
 import { callLLM, maybeAnthropicClient, normalizeModelName, } from "../pipeline/distiller.js";
-import { VaultWriter } from "../pipeline/writer.js";
 import { status as daemonStatus } from "../daemon/index.js";
 import { isOllamaAvailable } from "../search/embedder.js";
 import { isClaudeAvailable, isInstalled } from "../mcp/install.js";
@@ -124,27 +123,23 @@ function checkVaultPath(cfg) {
     return ok("vault path", `${collapseHome(p)} (writable)`);
 }
 // ── 4. output directory ───────────────────────────────────────────────────────
+// A diagnostic must not mutate the user's filesystem: just inspect the path.
+// (The previous implementation constructed a VaultWriter, which created the
+// category dirs as a side effect.)
 function checkOutputDir(cfg) {
     const dir = join(cfg.vaultPath, cfg.outputDir);
-    if (existsSync(dir)) {
-        let count = 0;
-        try {
-            count = new VaultWriter(cfg).noteCount();
-        }
-        catch {
-            // fall through with 0
-        }
-        return ok("output directory", `${count} note${count === 1 ? "" : "s"}`);
+    if (!existsSync(dir)) {
+        return warn("output directory", "will be created on first run");
     }
-    // Doesn't exist yet — fine as long as the vault is writable (it'll be
-    // created on first run). The vault-path check already verified writability.
+    let count = 0;
     try {
-        accessSync(cfg.vaultPath, constants.W_OK);
-        return ok("output directory", "will be created on first run");
+        count = readdirSync(dir, { recursive: true }).filter((f) => typeof f === "string" && f.endsWith(".md")).length;
     }
     catch {
-        return fail("output directory", `${collapseHome(dir)} — vault not writable`);
+        // unreadable dir — report it exists but couldn't be counted
+        return warn("output directory", `${collapseHome(dir)} — not readable`);
     }
+    return ok("output directory", `${count} note${count === 1 ? "" : "s"}`);
 }
 // ── 5. Claude Code sessions ───────────────────────────────────────────────────
 function countJsonl(dir) {

package/dist/diagnostics/doctor.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp/server.js CHANGED Viewed

@@ -28,7 +28,6 @@ import { join } from "node:path";
 import { exit } from "node:process";
 import { z } from "zod";
 import { STATE_PATH } from "../config.js";
-import { summarizeProject } from "../pipeline/summarizer.js";
 import { kebab } from "../pipeline/writer.js";
 import { search } from "../search/retriever.js";
 import { synthesize } from "../search/synthesizer.js";
@@ -295,29 +294,22 @@ export async function runMcpServer(cfg) {
         try {
             const slug = kebab(project);
             const file = join(cfg.vaultPath, cfg.outputDir, "projects", `${slug}.md`);
-            if (existsSync(file)) {
-                const content = readFileSync(file, "utf8");
-                const fm = parseFrontmatter(content);
+            // Read-only facade: never generate a summary here — that's an LLM
+            // call and a vault write. If it isn't cached, point the user at the
+            // CLI command that produces it under explicit intent.
+            if (!existsSync(file)) {
                 return ok({
-                    project: slug,
-                    content,
-                    sessions_count: fm.sessions ? Number(fm.sessions) : null,
-                    generated: fm.generated ?? null,
+                    error: `Project summary not yet generated. Run: vir summarize ${slug}`,
+                    project_slug: slug,
                 });
             }
-            // Not cached — generate fresh. summarizeProject only reads the DB and
-            // writes a vault markdown file, so the read-only DB constraint holds.
-            const res = await summarizeProject(cfg, slug, db);
-            if (!res) {
-                return fail(`no distilled notes for project '${slug}'`);
-            }
-            const content = readFileSync(res.path, "utf8");
+            const content = readFileSync(file, "utf8");
             const fm = parseFrontmatter(content);
             return ok({
                 project: slug,
                 content,
-                sessions_count: res.counts.total,
-                generated: fm.generated ?? new Date().toISOString(),
+                sessions_count: fm.sessions ? Number(fm.sessions) : null,
+                generated: fm.generated ?? null,
             });
         }
         catch (err) {

package/dist/mcp/server.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/pipeline/distiller.js CHANGED Viewed

@@ -142,7 +142,11 @@ ${scrubbedContent}`;
         return { classification: cls, markdown: md };
     }
 }
+// One delay per *retry*. Total attempts = 1 initial + 3 retries = 4: the loop
+// below tries-then-sleeps once per entry (3 tries, 3 backoffs), then makes a
+// final 4th attempt after the last sleep. Backoff schedule: 60s / 120s / 240s.
 const RETRY_DELAYS_MS = [60_000, 120_000, 240_000];
+const MAX_ATTEMPTS = RETRY_DELAYS_MS.length + 1;
 // The Kie path (native fetch → HttpError) retries 429 plus transient 5xx.
 // The Anthropic SDK already retries 5xx internally, so on that path we only
 // add 429 on top — never double-retry its 5xx.
@@ -176,10 +180,11 @@ export async function withRateLimitRetry(fn) {
             if (!isRetryable(err))
                 throw err;
             const delay = RETRY_DELAYS_MS[attempt] ?? 240_000;
-            console.warn(`[vir] retryable error (${statusOf(err)}) — retry ${attempt + 1}/${RETRY_DELAYS_MS.length} in ${delay / 1000}s`);
+            console.warn(`[vir] retryable error (${statusOf(err)}) — attempt ${attempt + 1}/${MAX_ATTEMPTS} failed, retrying in ${delay / 1000}s`);
             await sleep(delay);
         }
     }
+    // Final (4th) attempt after the last backoff — let its error propagate.
     return await fn();
 }
 function parseClassification(text, fallbackProject) {

package/dist/pipeline/distiller.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"distiller.js","sourceRoot":"","sources":["../../src/pipeline/distiller.ts"],"names":[],"mappings":"AAAA,OAAO,SAAS,MAAM,mBAAmB,CAAC;AAS1C,MAAM,UAAU,GAAe,CAAC,SAAS,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,CAAC,CAAC;AAEzE,MAAM,OAAO,SAAU,SAAQ,KAAK;IAClC,MAAM,CAAS;IACf,YAAY,MAAc,EAAE,OAAe;QACzC,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;QACrB,IAAI,CAAC,IAAI,GAAG,WAAW,CAAC;IAC1B,CAAC;CACF;AAED,MAAM,UAAU,oBAAoB,CAAC,MAAc;IACjD,OAAO,IAAI,SAAS,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,eAAe,IAAI,EAAE,EAAE,CAAC,CAAC;AACjE,CAAC;AAED,2EAA2E;AAC3E,qEAAqE;AACrE,MAAM,UAAU,oBAAoB,CAAC,MAAc;IACjD,OAAO,MAAM,CAAC,QAAQ,KAAK,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,oBAAoB,CAAC,MAAM,CAAC,CAAC;AACzE,CAAC;AAED,sEAAsE;AACtE,0EAA0E;AAC1E,yEAAyE;AACzE,+DAA+D;AAC/D,MAAM,oBAAoB,GAAG,CAAC,kBAAkB,EAAE,mBAAmB,CAAU,CAAC;AAEhF,MAAM,UAAU,kBAAkB,CAAC,KAAa,EAAE,QAAgB;IAChE,IAAI,QAAQ,KAAK,KAAK;QAAE,OAAO,KAAK,CAAC;IACrC,KAAK,MAAM,SAAS,IAAI,oBAAoB,EAAE,CAAC;QAC7C,IAAI,KAAK,CAAC,UAAU,CAAC,SAAS,CAAC;YAAE,OAAO,SAAS,CAAC;IACpD,CAAC;IACD,0DAA0D;IAC1D,OAAO,KAAK,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;AACtC,CAAC;AAWD,KAAK,UAAU,OAAO,CAAC,IAKtB;IACC,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,uCAAuC,EAAE;QACpE,MAAM,EAAE,MAAM;QACd,OAAO,EAAE;YACP,aAAa,EAAE,UAAU,IAAI,CAAC,MAAM,EAAE;YACtC,cAAc,EAAE,kBAAkB;SACnC;QACD,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC;YACnB,KAAK,EAAE,IAAI,CAAC,KAAK;YACjB,UAAU,EAAE,IAAI,CAAC,SAAS;YAC1B,QAAQ,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC;SACnD,CAAC;KACH,CAAC,CAAC;IAEH,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,MAAM,IAAI,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC;QACnD,MAAM,IAAI,SAAS,CACjB,QAAQ,CAAC,MAAM,EACf,OAAO,QAAQ,CAAC,MAAM,KAAK,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAChD,CAAC;IACJ,CAAC;IAED,MAAM,IAAI,GAAG,CAAC,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAgB,CAAC;IACpD,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,IAAI,IAAI,EAAE,CAAC;IAC3C,OAAO,IAAI,CAAC;AACd,CAAC;AAED,KAAK,UAAU,aAAa,CAAC,IAK5B;IACC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC;QAC7C,KAAK,EAAE,IAAI,CAAC,KAAK;QACjB,UAAU,EAAE,IAAI,CAAC,SAAS;QAC1B,QAAQ,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC;KACnD,CAAC,CAAC;IACH,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;QACjC,IAAI,KAAK,CAAC,IAAI,KAAK,MAAM;YAAE,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IACpD,CAAC;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAQD,MAAM,CAAC,KAAK,UAAU,OAAO,CAC3B,MAAc,EACd,MAAwB,EACxB,IAAiB;IAEjB,IAAI,MAAM,CAAC,QAAQ,KAAK,KAAK,EAAE,CAAC;QAC9B,OAAO,OAAO,CAAC;YACb,MAAM,EAAE,MAAM,CAAC,SAAS,IAAI,EAAE;YAC9B,KAAK,EAAE,IAAI,CAAC,KAAK;YACjB,SAAS,EAAE,IAAI,CAAC,SAAS;YACzB,MAAM,EAAE,IAAI,CAAC,MAAM;SACpB,CAAC,CAAC;IACL,CAAC;IACD,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,MAAM,IAAI,KAAK,CACb,oEAAoE,CACrE,CAAC;IACJ,CAAC;IACD,OAAO,aAAa,CAAC;QACnB,MAAM;QACN,KAAK,EAAE,IAAI,CAAC,KAAK;QACjB,SAAS,EAAE,IAAI,CAAC,SAAS;QACzB,MAAM,EAAE,IAAI,CAAC,MAAM;KACpB,CAAC,CAAC;AACL,CAAC;AAED,MAAM,OAAO,SAAS;IACZ,MAAM,CAAmB;IACzB,GAAG,CAAS;IACZ,aAAa,CAAS;IACtB,YAAY,CAAS;IAE7B,YAAY,GAAW;QACrB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAC;QACf,IAAI,CAAC,MAAM,GAAG,oBAAoB,CAAC,GAAG,CAAC,CAAC;QACxC,IAAI,CAAC,aAAa,GAAG,kBAAkB,CAAC,GAAG,CAAC,MAAM,CAAC,QAAQ,EAAE,GAAG,CAAC,QAAQ,CAAC,CAAC;QAC3E,IAAI,CAAC,YAAY,GAAG,kBAAkB,CAAC,GAAG,CAAC,MAAM,CAAC,OAAO,EAAE,GAAG,CAAC,QAAQ,CAAC,CAAC;IAC3E,CAAC;IAED,KAAK,CAAC,QAAQ,CACZ,OAAsB,EACtB,eAAuB;QAEvB,MAAM,MAAM,GAAG;;;;;;0BAMO,OAAO,CAAC,WAAW;;;EAG3C,eAAe,EAAE,CAAC;QAEhB,MAAM,IAAI,GAAG,MAAM,kBAAkB,CAAC,GAAG,EAAE,CACzC,OAAO,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,EAAE;YAC7B,MAAM;YACN,KAAK,EAAE,IAAI,CAAC,aAAa;YACzB,SAAS,EAAE,GAAG;SACf,CAAC,CACH,CAAC;QACF,OAAO,mBAAmB,CAAC,IAAI,EAAE,OAAO,CAAC,WAAW,CAAC,CAAC;IACxD,CAAC;IAED,KAAK,CAAC,OAAO,CACX,OAAsB,EACtB,eAAuB,EACvB,GAAmB;QAEnB,MAAM,MAAM,GAAG;;;;;yBAKM,GAAG,CAAC,OAAO,eAAe,GAAG,CAAC,QAAQ,WAAW,OAAO,CAAC,SAAS,IAAI,SAAS;;;;;;;EAOtG,eAAe,EAAE,CAAC;QAEhB,MAAM,IAAI,GAAG,MAAM,kBAAkB,CAAC,GAAG,EAAE,CACzC,OAAO,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,EAAE;YAC7B,MAAM;YACN,KAAK,EAAE,IAAI,CAAC,YAAY;YACxB,SAAS,EAAE,IAAI;SAChB,CAAC,CACH,CAAC;QACF,OAAO,IAAI,CAAC,IAAI,EAAE,CAAC;IACrB,CAAC;IAED,KAAK,CAAC,GAAG,CACP,OAAsB,EACtB,eAAuB,EACvB,eAAuB;QAEvB,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE,eAAe,CAAC,CAAC;QAC1D,IAAI,GAAG,CAAC,UAAU,IAAI,GAAG;YAAE,OAAO,IAAI,CAAC;QACvC,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,eAAe,EAAE,GAAG,CAAC,CAAC;QAC7D,OAAO,EAAE,cAAc,EAAE,GAAG,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC;IAC/C,CAAC;CACF;AAED,8EAA8E;AAC9E,6EAA6E;AAC7E,+EAA+E;AAC/E,MAAM,eAAe,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;AACnD,MAAM,YAAY,GAAG,eAAe,CAAC,MAAM,GAAG,CAAC,CAAC;AAEhD,0EAA0E;AAC1E,4EAA4E;AAC5E,+CAA+C;AAC/C,MAAM,oBAAoB,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC;AAEhE,MAAM,UAAU,WAAW,CAAC,GAAY;IACtC,IAAI,CAAC,GAAG,IAAI,OAAO,GAAG,KAAK,QAAQ;QAAE,OAAO,KAAK,CAAC;IAClD,IAAI,GAAG,YAAY,SAAS;QAAE,OAAO,oBAAoB,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;IAC1E,IAAI,GAAG,YAAY,SAAS,CAAC,QAAQ;QAAE,OAAO,GAAG,CAAC,MAAM,KAAK,GAAG,CAAC;IACjE,MAAM,CAA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package/dist/pipeline/parser.js CHANGED Viewed

@@ -1,5 +1,6 @@
 import { readFileSync } from "node:fs";
 import { basename, dirname } from "node:path";
+import { renderToolResult, renderToolUse } from "./toolCallFilter.js";
 const FILE_TOOLS = new Set([
     "Read",
     "Edit",
@@ -16,6 +17,11 @@ export function parseSession(path, hash) {
     const filesTouched = new Set();
     const assistantBlocks = [];
     const userBlocks = [];
+    // Chronological prose + tool blocks for the distill stage.
+    const transcriptParts = [];
+    // tool_result blocks carry only a tool_use_id, not the tool name; resolve it
+    // from the tool_use we saw earlier in the stream.
+    const toolNameById = new Map();
     for (const line of lines) {
         let evt;
         try {
@@ -44,11 +50,14 @@ export function parseSession(path, hash) {
                         assistantBlocks.push(b.text);
                     else if (role === "user")
                         userBlocks.push(b.text);
+                    transcriptParts.push(b.text);
                 }
                 if (blockType === "tool_use") {
                     toolCallCount += 1;
                     const toolName = typeof b.name === "string" ? b.name : "";
                     const input = b.input ?? {};
+                    if (typeof b.id === "string" && toolName)
+                        toolNameById.set(b.id, toolName);
                     if (FILE_TOOLS.has(toolName)) {
                         const fp = typeof input.file_path === "string"
                             ? input.file_path
@@ -58,6 +67,12 @@ export function parseSession(path, hash) {
                         if (fp)
                             filesTouched.add(fp);
                     }
+                    transcriptParts.push(renderToolUse(toolName || "unknown", safeStringify(input)));
+                }
+                if (blockType === "tool_result") {
+                    const id = typeof b.tool_use_id === "string" ? b.tool_use_id : undefined;
+                    const name = (id && toolNameById.get(id)) || "unknown";
+                    transcriptParts.push(renderToolResult(name, extractToolResultContent(b.content), b.is_error === true));
                 }
             }
         }
@@ -70,6 +85,7 @@ export function parseSession(path, hash) {
     }
     const assistantText = assistantBlocks.join("\n\n");
     const userText = userBlocks.join("\n\n");
+    const transcriptText = transcriptParts.join("\n\n");
     const rawSummary = buildRawSummary({
         userText,
         assistantText,
@@ -89,8 +105,38 @@ export function parseSession(path, hash) {
         assistantText,
         userText,
         rawSummary,
+        transcriptText,
     };
 }
+// tool_use inputs are arbitrary JSON; never let a stringify failure kill a
+// whole session parse.
+function safeStringify(input) {
+    try {
+        return JSON.stringify(input) ?? "{}";
+    }
+    catch {
+        return "{}";
+    }
+}
+// A tool_result's content is either a plain string or an array of content
+// blocks (text/image/…). Flatten to text; represent non-text blocks compactly.
+function extractToolResultContent(content) {
+    if (typeof content === "string")
+        return content;
+    if (!Array.isArray(content))
+        return "";
+    const parts = [];
+    for (const part of content) {
+        if (!part || typeof part !== "object")
+            continue;
+        const p = part;
+        if (p.type === "text" && typeof p.text === "string")
+            parts.push(p.text);
+        else if (typeof p.type === "string")
+            parts.push(`[${p.type}]`);
+    }
+    return parts.join("\n");
+}
 function buildRawSummary(opts) {
     const userPreview = truncate(opts.userText, 4000);
     const assistantPreview = truncate(opts.assistantText, 8000);

package/dist/pipeline/parser.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/dist/pipeline/run.js CHANGED Viewed

@@ -9,6 +9,7 @@ import { parseSession } from "./parser.js";
 import { scanSessions } from "./scanner.js";
 import { scrub } from "./scrubber.js";
 import { summarizeProject } from "./summarizer.js";
+import { filterToolCalls } from "./toolCallFilter.js";
 import { kebab, VaultWriter } from "./writer.js";
 export async function runPipeline(cfg, opts = {}) {
     ensureVirDir();
@@ -82,6 +83,14 @@ export async function runPipeline(cfg, opts = {}) {
                 }
             }
         }
+        // Rewrite mode skips per-note index appends; rebuild index.md once from the
+        // db so it reflects every note exactly once (no log.md append).
+        try {
+            writer.regenerateIndex();
+        }
+        catch (err) {
+            fileLog(`index regeneration failed: ${err.message}`);
+        }
         fileLog(`vir run done — rewriteOnly rewritten=${summary.rewritten} errored=${summary.errored}`);
         if (interactive) {
             ui.blank();
@@ -163,7 +172,14 @@ export async function runPipeline(cfg, opts = {}) {
                 continue;
             }
             const scrubbedSummary = scrub(parsed.rawSummary);
-            const scrubbedContent = scrub(parsed.assistantText + "\n\n" + parsed.userText);
+            const toolFilter = filterToolCalls(parsed.transcriptText, cfg.filterToolCalls);
+            if (toolFilter.tokensSaved > 1000) {
+                const msg = `filtered ${toolFilter.toolCallsStripped} tool results, saved ~${toolFilter.tokensSaved} tokens`;
+                if (interactive)
+                    ui.line(ui.dim(`  ${msg}`));
+                fileLog(msg);
+            }
+            const scrubbedContent = scrub(toolFilter.filtered);
             const note = await distiller.run(parsed, scrubbedSummary, scrubbedContent);
             if (!note) {
                 summary.lowConfidence += 1;
@@ -277,6 +293,7 @@ async function rewriteOne(writer, row) {
         assistantText: "",
         userText: "",
         rawSummary: "",
+        transcriptText: "",
     };
     const note = {
         classification: {
@@ -287,7 +304,7 @@ async function rewriteOne(writer, row) {
         },
         markdown: row.content,
     };
-    return writer.write(parsed, note);
+    return writer.write(parsed, note, "rewrite");
 }
 // Desktop notification, platform-aware and best-effort. macOS uses osascript;
 // Linux uses notify-send when present; every other platform silently skips.

package/dist/pipeline/run.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/pipeline/toolCallFilter.js ADDED Viewed

@@ -0,0 +1,136 @@
+// Bounded tool context for the distill stage.
+//
+// The parser emits tool calls into the transcript using the block grammar
+// defined here (renderToolUse / renderToolResult). This module is the single
+// owner of that grammar: it both renders the blocks and parses them back out,
+// so the two can never drift. The distiller historically saw zero tool output
+// (the parser dropped it); now it sees commands, errors, and short results,
+// while large outputs (file reads, long bash logs, big grep dumps) are stripped
+// to keep token cost bounded.
+// Tools whose results are routinely huge and rarely worth keeping in full.
+const LARGE_OUTPUT_TOOLS = new Set(["Bash", "Read", "Grep", "Glob"]);
+const AGGRESSIVE_LINE_THRESHOLD = 20;
+const MODERATE_LINE_THRESHOLD = 50;
+// tool_use inputs carry whole file bodies (Write content, Edit strings). We keep
+// the *intent* (file_path, command, description, pattern, query, …) untouched
+// and only truncate these large embedded-content fields past a char limit.
+// Char limits per mode: "content" fields (whole-file writes) vs "edit" strings.
+const CONTENT_LIMIT = { moderate: 2000, aggressive: 1000 };
+const EDIT_LIMIT = { moderate: 1000, aggressive: 500 };
+const RESULT_CLOSE = "[/tool_result]";
+// Reporting heuristic only — never used for billing. ~4 chars per token.
+function estimateTokens(s) {
+    return Math.ceil(s.length / 4);
+}
+export function renderToolUse(name, inputJson) {
+    return `[tool_use: ${name}] ${inputJson}`;
+}
+export function renderToolResult(name, content, isError) {
+    // Defang any literal close marker inside real output so it can't truncate
+    // the block when we parse it back out.
+    const safe = content.split(RESULT_CLOSE).join("[ /tool_result]");
+    const header = `[tool_result: ${name}${isError ? " ERROR" : ""}]`;
+    return `${header}\n${safe}\n${RESULT_CLOSE}`;
+}
+// Matches a rendered tool_result block: header, content (non-greedy), close.
+// Tool names are word chars plus . and - (covers Bash, Read, mcp__srv__tool).
+const TOOL_RESULT_RE = /\[tool_result: ([\w.-]+)( ERROR)?\]\n([\s\S]*?)\n\[\/tool_result\]/g;
+// tool_use is rendered on a single line ([tool_use: Name] <single-line JSON>),
+// so a non-newline-crossing capture grabs the whole input object.
+const TOOL_USE_RE = /\[tool_use: ([\w.-]+)\] (.+)/g;
+function lineCount(content) {
+    return content.length === 0 ? 0 : content.split("\n").length;
+}
+function maybeTruncate(obj, field, limit, tool) {
+    const v = obj[field];
+    if (typeof v === "string" && v.length > limit) {
+        obj[field] = `[truncated ${v.length} chars of ${field} for ${tool}]`;
+    }
+}
+// Trim large embedded-content fields out of a tool_use input, preserving every
+// other field (paths, commands, descriptions) verbatim. Returns the original
+// JSON untouched if it doesn't parse to an object.
+function boundToolUseInput(name, json, mode) {
+    let input;
+    try {
+        input = JSON.parse(json);
+    }
+    catch {
+        return json;
+    }
+    if (!input || typeof input !== "object")
+        return json;
+    const obj = input;
+    const content = CONTENT_LIMIT[mode];
+    const edit = EDIT_LIMIT[mode];
+    switch (name) {
+        case "Write":
+            maybeTruncate(obj, "content", content, name);
+            break;
+        case "Edit":
+            maybeTruncate(obj, "old_string", edit, name);
+            maybeTruncate(obj, "new_string", edit, name);
+            break;
+        case "MultiEdit":
+            if (Array.isArray(obj.edits)) {
+                for (const e of obj.edits) {
+                    if (e && typeof e === "object") {
+                        const ed = e;
+                        maybeTruncate(ed, "old_string", edit, name);
+                        maybeTruncate(ed, "new_string", edit, name);
+                    }
+                }
+            }
+            break;
+        case "NotebookEdit":
+            maybeTruncate(obj, "new_source", content, name);
+            break;
+        default:
+            return json;
+    }
+    return JSON.stringify(obj);
+}
+export function filterToolCalls(sessionText, mode) {
+    const originalTokens = estimateTokens(sessionText);
+    if (mode === "off") {
+        return {
+            filtered: sessionText,
+            originalTokens,
+            filteredTokens: originalTokens,
+            tokensSaved: 0,
+            toolCallsStripped: 0,
+        };
+    }
+    const threshold = mode === "aggressive"
+        ? AGGRESSIVE_LINE_THRESHOLD
+        : MODERATE_LINE_THRESHOLD;
+    // First bound oversized tool_use payloads (Write/Edit file bodies), keeping
+    // intent fields intact. Done before the tool_result pass so the two regexes
+    // never compete over the same span.
+    const usesBounded = sessionText.replace(TOOL_USE_RE, (_match, name, json) => renderToolUse(name, boundToolUseInput(name, json, mode)));
+    let toolCallsStripped = 0;
+    const filtered = usesBounded.replace(TOOL_RESULT_RE, (_match, name, errorFlag, content) => {
+        const isError = Boolean(errorFlag);
+        const lines = lineCount(content);
+        const isLarge = LARGE_OUTPUT_TOOLS.has(name);
+        // Keep errors always (the failure is the signal), keep anything that
+        // isn't a known big-output tool, and keep small results regardless.
+        // Only large-output tools over the threshold get stripped. Kept blocks
+        // drop the closing fence — it's parser plumbing, not signal for the LLM.
+        if (isError || !isLarge || lines <= threshold) {
+            const header = `[tool_result: ${name}${isError ? " ERROR" : ""}]`;
+            return `${header}\n${content}`;
+        }
+        toolCallsStripped += 1;
+        return `[tool_result: ${name} output, ${lines} lines, stripped]`;
+    });
+    const filteredTokens = estimateTokens(filtered);
+    return {
+        filtered,
+        originalTokens,
+        filteredTokens,
+        tokensSaved: Math.max(0, originalTokens - filteredTokens),
+        toolCallsStripped,
+    };
+}
+//# sourceMappingURL=toolCallFilter.js.map

package/dist/pipeline/toolCallFilter.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"toolCallFilter.js","sourceRoot":"","sources":["../../src/pipeline/toolCallFilter.ts"],"names":[],"mappings":"AAAA,8CAA8C;AAC9C,EAAE;AACF,0EAA0E;AAC1E,6EAA6E;AAC7E,8EAA8E;AAC9E,8EAA8E;AAC9E,4EAA4E;AAC5E,gFAAgF;AAChF,8BAA8B;AAI9B,2EAA2E;AAC3E,MAAM,kBAAkB,GAAG,IAAI,GAAG,CAAC,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC,CAAC;AAErE,MAAM,yBAAyB,GAAG,EAAE,CAAC;AACrC,MAAM,uBAAuB,GAAG,EAAE,CAAC;AAEnC,iFAAiF;AACjF,8EAA8E;AAC9E,2EAA2E;AAC3E,gFAAgF;AAChF,MAAM,aAAa,GAAG,EAAE,QAAQ,EAAE,IAAI,EAAE,UAAU,EAAE,IAAI,EAAW,CAAC;AACpE,MAAM,UAAU,GAAG,EAAE,QAAQ,EAAE,IAAI,EAAE,UAAU,EAAE,GAAG,EAAW,CAAC;AAEhE,MAAM,YAAY,GAAG,gBAAgB,CAAC;AAUtC,yEAAyE;AACzE,SAAS,cAAc,CAAC,CAAS;IAC/B,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;AACjC,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,IAAY,EAAE,SAAiB;IAC3D,OAAO,cAAc,IAAI,KAAK,SAAS,EAAE,CAAC;AAC5C,CAAC;AAED,MAAM,UAAU,gBAAgB,CAC9B,IAAY,EACZ,OAAe,EACf,OAAgB;IAEhB,0EAA0E;IAC1E,uCAAuC;IACvC,MAAM,IAAI,GAAG,OAAO,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC;IACjE,MAAM,MAAM,GAAG,iBAAiB,IAAI,GAAG,OAAO,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC;IAClE,OAAO,GAAG,MAAM,KAAK,IAAI,KAAK,YAAY,EAAE,CAAC;AAC/C,CAAC;AAED,6EAA6E;AAC7E,8EAA8E;AAC9E,MAAM,cAAc,GAClB,qEAAqE,CAAC;AAExE,+EAA+E;AAC/E,kEAAkE;AAClE,MAAM,WAAW,GAAG,+BAA+B,CAAC;AAEpD,SAAS,SAAS,CAAC,OAAe;IAChC,OAAO,OAAO,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC;AAC/D,CAAC;AAED,SAAS,aAAa,CACpB,GAA4B,EAC5B,KAAa,EACb,KAAa,EACb,IAAY;IAEZ,MAAM,CAAC,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC;IACrB,IAAI,OAAO,CAAC,KAAK,QAAQ,IAAI,CAAC,CAAC,MAAM,GAAG,KAAK,EAAE,CAAC;QAC9C,GAAG,CAAC,KAAK,CAAC,GAAG,cAAc,CAAC,CAAC,MAAM,aAAa,KAAK,QAAQ,IAAI,GAAG,CAAC;IACvE,CAAC;AACH,CAAC;AAED,+EAA+E;AAC/E,6EAA6E;AAC7E,mDAAmD;AACnD,SAAS,iBAAiB,CACxB,IAAY,EACZ,IAAY,EACZ,IAA+B;IAE/B,IAAI,KAAc,CAAC;IACnB,IAAI,CAAC;QACH,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAC3B,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;IACD,IAAI,CAAC,KAAK,IAAI,OAAO,KAAK,KAAK,QAAQ;QAAE,OAAO,IAAI,CAAC;IACrD,MAAM,GAAG,GAAG,KAAgC,CAAC;IAC7C,MAAM,OAAO,GAAG,aAAa,CAAC,IAAI,CAAC,CAAC;IACpC,MAAM,IAAI,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;IAE9B,QAAQ,IAAI,EAAE,CAAC;QACb,KAAK,OAAO;YACV,aAAa,CAAC,GAAG,EAAE,SAAS,EAAE,OAAO,EAAE,IAAI,CAAC,CAAC;YAC7C,MAAM;QACR,KAAK,MAAM;YACT,aAAa,CAAC,GAAG,EAAE,YAAY,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC;YAC7C,aAAa,CAAC,GAAG,EAAE,YAAY,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC;YAC7C,MAAM;QACR,KAAK,WAAW;YACd,IAAI,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC;gBAC7B,KAAK,MAAM,CAAC,IAAI,GAAG,CAAC,KAAK,EAAE,CAAC;oBAC1B,IAAI,CAAC,IAAI,OAAO,CAAC,KAAK,QAAQ,EAAE,CAAC;wBAC/B,MAAM,EAAE,GAAG,CAA4B,CAAC;wBACxC,aAAa,CAAC,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC;wBAC5C,aAAa,CAAC,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC;oBAC9C,CAAC;gBACH,CAAC;YACH,CAAC;YACD,MAAM;QACR,KAAK,cAAc;YACjB,aAAa,CAAC,GAAG,EAAE,YAAY,EAAE,OAAO,EAAE,IAAI,CAAC,CAAC;YAChD,MAAM;QACR;YACE,OAAO,IAAI,CAAC;IAChB,CAAC;IACD,OAAO,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;AAC7B,CAAC;AAED,MAAM,UAAU,eAAe,CAC7B,WAAmB,EACnB,IAAgB;IAEhB,MAAM,cAAc,GAAG,cAAc,CAAC,WAAW,CAAC,CAAC;IAEnD,IAAI,IAAI,KAAK,KAAK,EAAE,CAAC;QACnB,OAAO;YACL,QAAQ,EAAE,WAAW;YACrB,cAAc;YACd,cAAc,EAAE,cAAc;YAC9B,WAAW,EAAE,CAAC;YACd,iBAAiB,EAAE,CAAC;SACrB,CAAC;IACJ,CAAC;IAED,MAAM,SAAS,GACb,IAAI,KAAK,YAAY;QACnB,CAAC,CAAC,yBAAyB;QAC3B,CAAC,CAAC,uBAAuB,CAAC;IAE9B,4EAA4E;IAC5E,4EAA4E;IAC5E,oCAAoC;IACpC,MAAM,WAAW,GAAG,WAAW,CAAC,OAAO,CACrC,WAAW,EACX,CAAC,MAAM,EAAE,IAAY,EAAE,IAAY,EAAE,EAAE,CACrC,aAAa,CAAC,IAAI,EAAE,iBAAiB,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC,CAC3D,CAAC;IAEF,IAAI,iBAAiB,GAAG,CAAC,CAAC;IAC1B,MAAM,QAAQ,GAAG,WAAW,CAAC,OAAO,CAClC,cAAc,EACd,CAAC,MAAM,EAAE,IAAY,EAAE,SAA6B,EAAE,OAAe,EAAE,EAAE;QACvE,MAAM,OAAO,GAAG,OAAO,CAAC,SAAS,CAAC,CAAC;QACnC,MAAM,KAAK,GAAG,SAAS,CAAC,OAAO,CAAC,CAAC;QACjC,MAAM,OAAO,GAAG,kBAAkB,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAE7C,qEAAqE;QACrE,oEAAoE;QACpE,uEAAuE;QACvE,yEAAyE;QACzE,IAAI,OAAO,IAAI,CAAC,OAAO,IAAI,KAAK,IAAI,SAAS,EAAE,CAAC;YAC9C,MAAM,MAAM,GAAG,iBAAiB,IAAI,GAAG,OAAO,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC;YAClE,OAAO,GAAG,MAAM,KAAK,OAAO,EAAE,CAAC;QACjC,CAAC;QAED,iBAAiB,IAAI,CAAC,CAAC;QACvB,OAAO,iBAAiB,IAAI,YAAY,KAAK,mBAAmB,CAAC;IACnE,CAAC,CACF,CAAC;IAEF,MAAM,cAAc,GAAG,cAAc,CAAC,QAAQ,CAAC,CAAC;IAChD,OAAO;QACL,QAAQ;QACR,cAAc;QACd,cAAc;QACd,WAAW,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,cAAc,GAAG,cAAc,CAAC;QACzD,iBAAiB;KAClB,CAAC;AACJ,CAAC"}

package/dist/pipeline/writer.js CHANGED Viewed

@@ -22,7 +22,7 @@ export class VaultWriter {
         this.ensureIndex();
         this.ensureLog();
     }
-    async write(session, note) {
+    async write(session, note, mode = "append") {
         const { classification, markdown } = note;
         const slug = makeSlug(classification.topic, session.sessionId);
         const subDir = CATEGORY_DIR[classification.category];
@@ -47,21 +47,46 @@ export class VaultWriter {
         const finalContent = frontmatter + wikilinkHeader + body + "\n";
         writeFileSync(fullPath, finalContent);
         await this.maybeEmbed(session, note, finalContent);
-        this.appendIndex({
-            date: (session.startedAt ?? new Date().toISOString()).slice(0, 10),
-            topic: classification.topic,
-            category: classification.category,
-            project: classification.project,
-            relPath,
-        });
-        this.appendLog({
-            ts: new Date().toISOString().slice(0, 16).replace("T", " "),
-            category: classification.category,
-            topic: classification.topic,
-            project: classification.project,
-        });
+        // Rewrite mode re-renders existing notes from stored content; the index is
+        // rebuilt wholesale via regenerateIndex() afterward and log.md is left
+        // untouched, so appending per-note here would duplicate every row.
+        if (mode === "append") {
+            this.appendIndex({
+                date: (session.startedAt ?? new Date().toISOString()).slice(0, 10),
+                topic: classification.topic,
+                category: classification.category,
+                project: classification.project,
+                relPath,
+            });
+            this.appendLog({
+                ts: new Date().toISOString().slice(0, 16).replace("T", " "),
+                category: classification.category,
+                topic: classification.topic,
+                project: classification.project,
+            });
+        }
         return [fullPath];
     }
+    // Rebuild index.md from scratch off the distilled rows in SQLite, sorted by
+    // date descending. Used by the --rewrite-only run so re-rendering notes never
+    // appends duplicate index rows. Never touches log.md. No-op without a db.
+    regenerateIndex() {
+        if (!this.db)
+            return;
+        const rows = [...this.db.listDistilled()].sort((a, b) => (b.startedAt ?? "").localeCompare(a.startedAt ?? ""));
+        const header = "# vir — Distilled Knowledge\n\n" +
+            "| Date | Topic | Category | Project | Link |\n" +
+            "|------|-------|----------|---------|------|\n";
+        const body = rows
+            .map((r) => {
+            const date = (r.startedAt ?? "").slice(0, 10);
+            const relPath = join(CATEGORY_DIR[r.category], `${makeSlug(r.topic, r.sessionId)}.md`);
+            const link = `[[${relPath.replace(/\.md$/, "")}|${r.topic}]]`;
+            return `| ${date} | ${r.topic} | ${r.category} | ${r.project} | ${link} |`;
+        })
+            .join("\n");
+        writeFileSync(join(this.root, "index.md"), body.length > 0 ? `${header}${body}\n` : header);
+    }
     // Best-effort: embed the freshly-written note via Ollama and store the
     // vector. Any failure (Ollama down, timeout, model missing) is swallowed —
     // an embedding miss must never fail a write.

package/dist/pipeline/writer.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@djolex999/vir-cli",
-  "version": "0.3.4",
+  "version": "0.4.0",
   "description": "Distills Claude Code sessions into a compounding knowledge vault",
   "author": "Djordje Marković <djordje@growthq.rs>",
   "license": "MIT",
@@ -38,7 +38,7 @@
     "test": "vitest run"
   },
   "engines": {
-    "node": ">=18"
+    "node": ">=20"
   },
   "dependencies": {
     "@anthropic-ai/sdk": "^0.32.1",