@djolex999/vir-cli 0.3.4 → 0.3.5

package/README.md

@@ -117,7 +117,7 @@ sources 4  ·  via embedding  ·  searched 126
 ## Prerequisites
 
 - macOS or Linux (systemd or cron)
-- Node.js 18+
+- Node.js 20+
 - Claude Code (sessions at `~/.claude/projects/`)
 - Obsidian vault
 - Anthropic API key **or** Kie.ai API key (~72% cheaper, same models)
@@ -202,9 +202,9 @@ with your distro, init system, and Node version.
 
 | | |
 |---|---|
-| Tests | 25 passing |
+| Tests | 30 passing |
 | Platforms | macOS (launchd), Linux (systemd/cron) |
-| Node | 18+ |
+| Node | 20+ |
 | First-run cost | $1–5 (Kie.ai recommended for 72% savings) |
 | Ongoing cost | ~$0.05 per run |
 

package/dist/config.js

@@ -1,4 +1,4 @@
-import { existsSync, mkdirSync, readFileSync, writeFileSync } from "node:fs";
+import { chmodSync, existsSync, mkdirSync, readFileSync, statSync, writeFileSync, } from "node:fs";
 import { homedir } from "node:os";
 import { dirname, join } from "node:path";
 import { z } from "zod";
@@ -56,6 +56,13 @@ export function expandHome(p) {
 export function ensureVirDir() {
     if (!existsSync(VIR_DIR))
         mkdirSync(VIR_DIR, { recursive: true });
+    // The dir holds config.json with API keys — keep it owner-only.
+    try {
+        chmodSync(VIR_DIR, 0o700);
+    }
+    catch {
+        // best-effort (e.g. exotic filesystems); never block on a chmod
+    }
 }
 export function configExists() {
     return existsSync(CONFIG_PATH);
@@ -64,6 +71,15 @@ export function loadConfig() {
     if (!existsSync(CONFIG_PATH)) {
         throw new Error(`Config not found at ${CONFIG_PATH}. Run \`vir init\` first.`);
     }
+    // Migrate pre-0.3.5 installs whose config.json is group/world-readable —
+    // it holds API keys, so tighten to 0600 silently. Best-effort.
+    try {
+        if (statSync(CONFIG_PATH).mode & 0o077)
+            chmodSync(CONFIG_PATH, 0o600);
+    }
+    catch {
+        // ignore — a failed chmod must never block loading config
+    }
     const raw = readFileSync(CONFIG_PATH, "utf8");
     const parsed = ConfigSchema.parse(JSON.parse(raw));
     return {
@@ -78,5 +94,12 @@ export function saveConfig(cfg) {
         mkdirSync(dirname(CONFIG_PATH), { recursive: true });
     }
     writeFileSync(CONFIG_PATH, JSON.stringify(cfg, null, 2));
+    // config.json contains API keys — owner read/write only.
+    try {
+        chmodSync(CONFIG_PATH, 0o600);
+    }
+    catch {
+        // best-effort; a failed chmod must not fail the save
+    }
 }
 //# sourceMappingURL=config.js.map

package/dist/config.js.map

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package/dist/daemon/cron.js

@@ -13,6 +13,12 @@ export function generateCronLine(cadenceHours, command) {
     const h = cronHourInterval(cadenceHours);
     return `0 */${h} * * * ${command} ${VIR_CRON_MARKER}`;
 }
+// POSIX-shell single-quote a path so spaces/special chars in node/cli/log paths
+// survive crontab's `/bin/sh -c` execution. Embedded single quotes close, escape,
+// reopen ('\'').
+export function shellQuote(s) {
+    return `'${s.replace(/'/g, "'\\''")}'`;
+}
 export function parseCronCadence(line) {
     // Hour field is the second whitespace-delimited token; expect "*/N".
     const fields = line.trim().split(/\s+/);
@@ -52,7 +58,10 @@ function writeCrontab(content) {
     }
 }
 export function install(opts) {
-    const command = `${opts.nodePath} ${opts.cliPath} run --yes >> ${DAEMON_LOG_PATH} 2>&1`;
+    // --daemon gives quiet output + file logging; the redirect still captures any
+    // stderr/crash output cron would otherwise mail to the user.
+    const command = `${shellQuote(opts.nodePath)} ${shellQuote(opts.cliPath)} run --daemon ` +
+        `>> ${shellQuote(DAEMON_LOG_PATH)} 2>&1`;
     const line = generateCronLine(opts.cadenceHours, command);
     const cleaned = removeVirLines(readCrontab());
     writeCrontab(appendLine(cleaned, line));

package/dist/daemon/cron.js.map

@@ -1 +1 @@
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+{"version":3,"file":"cron.js","sourceRoot":"","sources":["../../src/daemon/cron.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAC/C,OAAO,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAE/C,+EAA+E;AAC/E,6CAA6C;AAC7C,MAAM,CAAC,MAAM,eAAe,GAAG,WAAW,CAAC;AAe3C,6EAA6E;AAC7E,+EAA+E;AAC/E,QAAQ;AACR,MAAM,UAAU,gBAAgB,CAAC,YAAoB;IACnD,OAAO,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC;AAC7D,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,YAAoB,EAAE,OAAe;IACpE,MAAM,CAAC,GAAG,gBAAgB,CAAC,YAAY,CAAC,CAAC;IACzC,OAAO,OAAO,CAAC,UAAU,OAAO,IAAI,eAAe,EAAE,CAAC;AACxD,CAAC;AAED,gFAAgF;AAChF,kFAAkF;AAClF,iBAAiB;AACjB,MAAM,UAAU,UAAU,CAAC,CAAS;IAClC,OAAO,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,CAAC;AACzC,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,IAAY;IAC3C,qEAAqE;IACrE,MAAM,MAAM,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IACxC,MAAM,SAAS,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;IAC5B,IAAI,CAAC,SAAS;QAAE,OAAO,IAAI,CAAC;IAC5B,MAAM,CAAC,GAAG,SAAS,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;IACzC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;AACzC,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,OAAe;IAC5C,OAAO,OAAO;SACX,KAAK,CAAC,IAAI,CAAC;SACX,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,eAAe,CAAC,CAAC;SAC3C,IAAI,CAAC,IAAI,CAAC,CAAC;AAChB,CAAC;AAED,8EAA8E;AAC9E,qEAAqE;AACrE,SAAS,UAAU,CAAC,IAAY,EAAE,IAAY;IAC5C,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;IACzC,OAAO,OAAO,KAAK,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,IAAI,CAAC,CAAC,CAAC,GAAG,OAAO,KAAK,IAAI,IAAI,CAAC;AAChE,CAAC;AAED,MAAM,UAAU,eAAe;IAC7B,OAAO,SAAS,CAAC,OAAO,EAAE,CAAC,SAAS,CAAC,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC;AAC5E,CAAC;AAED,6EAA6E;AAC7E,iDAAiD;AACjD,SAAS,WAAW;IAClB,MAAM,GAAG,GAAG,SAAS,CAAC,SAAS,EAAE,CAAC,IAAI,CAAC,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;IAC/D,IAAI,GAAG,CAAC,MAAM,KAAK,CAAC,IAAI,OAAO,GAAG,CAAC,MAAM,KAAK,QAAQ;QAAE,OAAO,GAAG,CAAC,MAAM,CAAC;IAC1E,OAAO,EAAE,CAAC;AACZ,CAAC;AAED,SAAS,YAAY,CAAC,OAAe;IACnC,MAAM,GAAG,GAAG,SAAS,CAAC,SAAS,EAAE,CAAC,GAAG,CAAC,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;IAC9E,IAAI,GAAG,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACrB,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,GAAG,CAAC,MAAM,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;IACxE,CAAC;AACH,CAAC;AAED,MAAM,UAAU,OAAO,CAAC,IAAiB;IACvC,8EAA8E;IAC9E,6DAA6D;IAC7D,MAAM,OAAO,GACX,GAAG,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,UAAU,CAAC,IAAI,CAAC,OAAO,CAAC,gBAAgB;QACxE,MAAM,UAAU,CAAC,eAAe,CAAC,OAAO,CAAC;IAC3C,MAAM,IAAI,GAAG,gBAAgB,CAAC,IAAI,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;IAC1D,MAAM,OAAO,GAAG,cAAc,CAAC,WAAW,EAAE,CAAC,CAAC;IAC9C,YAAY,CAAC,UAAU,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC,CAAC;AAC1C,CAAC;AAED,MAAM,UAAU,SAAS;IACvB,MAAM,OAAO,GAAG,cAAc,CAAC,WAAW,EAAE,CAAC,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;IAClE,uEAAuE;IACvE,YAAY,CAAC,OAAO,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,OAAO,IAAI,CAAC,CAAC;AACrD,CAAC;AAED,MAAM,UAAU,MAAM;IACpB,MAAM,OAAO,GAAG,WAAW,EAAE;SAC1B,KAAK,CAAC,IAAI,CAAC;SACX,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,eAAe,CAAC,CAAC,CAAC;IAC5C,IAAI,CAAC,OAAO,EAAE,CAAC;QACb,OAAO,EAAE,SAAS,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,YAAY,EAAE,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC;IACnF,CAAC;IACD,4EAA4E;IAC5E,OAAO;QACL,SAAS,EAAE,IAAI;QACf,MAAM,EAAE,IAAI;QACZ,YAAY,EAAE,gBAAgB,CAAC,OAAO,CAAC;QACvC,UAAU,EAAE,gBAAgB;KAC7B,CAAC;AACJ,CAAC"}

package/dist/daemon/systemd.js

@@ -44,6 +44,12 @@ function systemctl(args) {
         stderr: res.stderr ?? "",
     };
 }
+// systemd splits ExecStart on whitespace; double-quote each path so spaces
+// survive, escaping embedded backslashes and quotes per systemd's own rules
+// (NOT shell rules — systemd parses the unit, no shell is involved).
+export function systemdQuote(s) {
+    return `"${s.replace(/\\/g, "\\\\").replace(/"/g, '\\"')}"`;
+}
 // %h is systemd's user-home specifier — keeps the unit portable across users.
 export function renderService(opts) {
     return `[Unit]
@@ -51,7 +57,7 @@ Description=Vir Claude Code session distillation
 
 [Service]
 Type=oneshot
-ExecStart=${opts.nodePath} ${opts.cliPath} run --yes
+ExecStart=${systemdQuote(opts.nodePath)} ${systemdQuote(opts.cliPath)} run --daemon
 StandardOutput=append:%h/.vir/daemon.log
 StandardError=append:%h/.vir/daemon.log
 `;

package/dist/daemon/systemd.js.map

@@ -1 +1 @@
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+{"version":3,"file":"systemd.js","sourceRoot":"","sources":["../../src/daemon/systemd.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAC/C,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,YAAY,EAAE,MAAM,EAAE,aAAa,EAAE,MAAM,SAAS,CAAC;AACrF,OAAO,EAAE,OAAO,EAAE,MAAM,SAAS,CAAC;AAClC,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,sEAAsE;AACtE,2CAA2C;AAC3C,MAAM,OAAO,wBAAyB,SAAQ,KAAK;IACjD;QACE,KAAK,CAAC,qBAAqB,CAAC,CAAC;QAC7B,IAAI,CAAC,IAAI,GAAG,0BAA0B,CAAC;IACzC,CAAC;CACF;AAED,6EAA6E;AAC7E,gFAAgF;AAChF,0EAA0E;AAC1E,0BAA0B;AAC1B,MAAM,OAAO,8BAA+B,SAAQ,KAAK;IACvD;QACE,KAAK,CAAC,gCAAgC,CAAC,CAAC;QACxC,IAAI,CAAC,IAAI,GAAG,gCAAgC,CAAC;IAC/C,CAAC;CACF;AAED,+EAA+E;AAC/E,yEAAyE;AACzE,+EAA+E;AAC/E,uEAAuE;AACvE,kDAAkD;AAClD,MAAM,UAAU,oBAAoB,CAAC,KAIpC;IACC,OAAO,6BAA6B,CAAC,IAAI,CAAC,GAAG,KAAK,CAAC,MAAM,KAAK,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;AAChF,CAAC;AAED,oDAAoD;AACpD,MAAM,gBAAgB,GAAG,IAAI,CAAC,OAAO,EAAE,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;AACvE,MAAM,YAAY,GAAG,IAAI,CAAC,gBAAgB,EAAE,aAAa,CAAC,CAAC;AAC3D,MAAM,UAAU,GAAG,IAAI,CAAC,gBAAgB,EAAE,WAAW,CAAC,CAAC;AACvD,MAAM,UAAU,GAAG,WAAW,CAAC;AAe/B,MAAM,UAAU,kBAAkB;IAChC,OAAO,SAAS,CAAC,OAAO,EAAE,CAAC,WAAW,CAAC,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC;AAC9E,CAAC;AAED,SAAS,SAAS,CAAC,IAAc;IAK/B,MAAM,GAAG,GAAG,SAAS,CAAC,WAAW,EAAE,IAAI,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;IAC/D,OAAO;QACL,IAAI,EAAE,GAAG,CAAC,MAAM,IAAI,CAAC,CAAC;QACtB,MAAM,EAAE,GAAG,CAAC,MAAM,IAAI,EAAE;QACxB,MAAM,EAAE,GAAG,CAAC,MAAM,IAAI,EAAE;KACzB,CAAC;AACJ,CAAC;AAED,2EAA2E;AAC3E,4EAA4E;AAC5E,qEAAqE;AACrE,MAAM,UAAU,YAAY,CAAC,CAAS;IACpC,OAAO,IAAI,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,KAAK,CAAC,GAAG,CAAC;AAC9D,CAAC;AAED,8EAA8E;AAC9E,MAAM,UAAU,aAAa,CAAC,IAG7B;IACC,OAAO;;;;;YAKG,YAAY,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC;;;CAGpE,CAAC;AACF,CAAC;AAED,MAAM,UAAU,WAAW,CAAC,YAAoB;IAC9C,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC;IAChD,OAAO;4BACmB,CAAC;;;;kBAIX,CAAC;;;;CAIlB,CAAC;AACF,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,KAAa;IAC7C,MAAM,CAAC,GAAG,KAAK,CAAC,KAAK,CAAC,wBAAwB,CAAC,CAAC;IAChD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;AACzC,CAAC;AAED,8EAA8E;AAC9E,6EAA6E;AAC7E,8EAA8E;AAC9E,SAAS,sBAAsB,CAC7B,EAAU,EACV,GAAqD;IAErD,IAAI,oBAAoB,CAAC,GAAG,CAAC;QAAE,OAAO,IAAI,8BAA8B,EAAE,CAAC;IAC3E,OAAO,IAAI,KAAK,CAAC,aAAa,EAAE,YAAY,GAAG,CAAC,MAAM,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;AACnE,CAAC;AAED,SAAS,eAAe;IACtB,IAAI,UAAU,CAAC,YAAY,CAAC;QAAE,MAAM,CAAC,YAAY,CAAC,CAAC;IACnD,IAAI,UAAU,CAAC,UAAU,CAAC;QAAE,MAAM,CAAC,UAAU,CAAC,CAAC;AACjD,CAAC;AAED,MAAM,UAAU,OAAO,CAAC,IAAiB;IACvC,IAAI,CAAC,kBAAkB,EAAE;QAAE,MAAM,IAAI,wBAAwB,EAAE,CAAC;IAEhE,mEAAmE;IACnE,0EAA0E;IAC1E,6BAA6B;IAC7B,MAAM,KAAK,GAAG,SAAS,CAAC,CAAC,QAAQ,EAAE,mBAAmB,CAAC,CAAC,CAAC;IACzD,IAAI,oBAAoB,CAAC,KAAK,CAAC;QAAE,MAAM,IAAI,8BAA8B,EAAE,CAAC;IAE5E,IAAI,CAAC,UAAU,CAAC,gBAAgB,CAAC,EAAE,CAAC;QAClC,SAAS,CAAC,gBAAgB,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IACnD,CAAC;IACD,IAAI,CAAC;QACH,aAAa,CACX,YAAY,EACZ,aAAa,CAAC,EAAE,QAAQ,EAAE,IAAI,CAAC,QAAQ,EAAE,OAAO,EAAE,IAAI,CAAC,OAAO,EAAE,CAAC,CAClE,CAAC;QACF,aAAa,CAAC,UAAU,EAAE,WAAW,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC;QAE1D,MAAM,MAAM,GAAG,SAAS,CAAC,CAAC,QAAQ,EAAE,eAAe,CAAC,CAAC,CAAC;QACtD,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC;YAAE,MAAM,sBAAsB,CAAC,eAAe,EAAE,MAAM,CAAC,CAAC;QAC7E,MAAM,MAAM,GAAG,SAAS,CAAC,CAAC,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,UAAU,CAAC,CAAC,CAAC;QACpE,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC;YAAE,MAAM,sBAAsB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;IACxE,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,2EAA2E;QAC3E,qEAAqE;QACrE,eAAe,EAAE,CAAC;QAClB,MAAM,GAAG,CAAC;IACZ,CAAC;AACH,CAAC;AAED,MAAM,UAAU,SAAS;IACvB,IAAI,CAAC,kBAAkB,EAAE;QAAE,OAAO;IAClC,SAAS,CAAC,CAAC,QAAQ,EAAE,SAAS,EAAE,OAAO,EAAE,UAAU,CAAC,CAAC,CAAC;IACtD,eAAe,EAAE,CAAC;IAClB,SAAS,CAAC,CAAC,QAAQ,EAAE,eAAe,CAAC,CAAC,CAAC;AACzC,CAAC;AAED,MAAM,UAAU,MAAM;IACpB,IAAI,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;QAC5B,OAAO,EAAE,SAAS,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,YAAY,EAAE,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC;IACnF,CAAC;IACD,MAAM,QAAQ,GAAG,SAAS,CAAC,CAAC,QAAQ,EAAE,WAAW,EAAE,UAAU,CAAC,CAAC,CAAC;IAChE,IAAI,YAAY,GAAkB,IAAI,CAAC;IACvC,IAAI,CAAC;QACH,YAAY,GAAG,iBAAiB,CAAC,YAAY,CAAC,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC;IACrE,CAAC;IAAC,MAAM,CAAC;QACP,wCAAwC;IAC1C,CAAC;IACD,OAAO;QACL,SAAS,EAAE,IAAI;QACf,MAAM,EAAE,QAAQ,CAAC,MAAM,CAAC,IAAI,EAAE,KAAK,QAAQ;QAC3C,YAAY;QACZ,UAAU,EAAE,UAAU;KACvB,CAAC;AACJ,CAAC"}

package/dist/diagnostics/doctor.js

@@ -13,7 +13,6 @@ import { join } from "node:path";
 import { readFileSync } from "node:fs";
 import { CONFIG_PATH, ConfigSchema, STATE_PATH, expandHome, } from "../config.js";
 import { callLLM, maybeAnthropicClient, normalizeModelName, } from "../pipeline/distiller.js";
-import { VaultWriter } from "../pipeline/writer.js";
 import { status as daemonStatus } from "../daemon/index.js";
 import { isOllamaAvailable } from "../search/embedder.js";
 import { isClaudeAvailable, isInstalled } from "../mcp/install.js";
@@ -124,27 +123,23 @@ function checkVaultPath(cfg) {
     return ok("vault path", `${collapseHome(p)} (writable)`);
 }
 // ── 4. output directory ───────────────────────────────────────────────────────
+// A diagnostic must not mutate the user's filesystem: just inspect the path.
+// (The previous implementation constructed a VaultWriter, which created the
+// category dirs as a side effect.)
 function checkOutputDir(cfg) {
     const dir = join(cfg.vaultPath, cfg.outputDir);
-    if (existsSync(dir)) {
-        let count = 0;
-        try {
-            count = new VaultWriter(cfg).noteCount();
-        }
-        catch {
-            // fall through with 0
-        }
-        return ok("output directory", `${count} note${count === 1 ? "" : "s"}`);
+    if (!existsSync(dir)) {
+        return warn("output directory", "will be created on first run");
     }
-    // Doesn't exist yet — fine as long as the vault is writable (it'll be
-    // created on first run). The vault-path check already verified writability.
+    let count = 0;
     try {
-        accessSync(cfg.vaultPath, constants.W_OK);
-        return ok("output directory", "will be created on first run");
+        count = readdirSync(dir, { recursive: true }).filter((f) => typeof f === "string" && f.endsWith(".md")).length;
     }
     catch {
-        return fail("output directory", `${collapseHome(dir)} — vault not writable`);
+        // unreadable dir — report it exists but couldn't be counted
+        return warn("output directory", `${collapseHome(dir)} — not readable`);
     }
+    return ok("output directory", `${count} note${count === 1 ? "" : "s"}`);
 }
 // ── 5. Claude Code sessions ───────────────────────────────────────────────────
 function countJsonl(dir) {

package/dist/diagnostics/doctor.js.map

@@ -1 +1 @@
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package/dist/mcp/server.js

@@ -28,7 +28,6 @@ import { join } from "node:path";
 import { exit } from "node:process";
 import { z } from "zod";
 import { STATE_PATH } from "../config.js";
-import { summarizeProject } from "../pipeline/summarizer.js";
 import { kebab } from "../pipeline/writer.js";
 import { search } from "../search/retriever.js";
 import { synthesize } from "../search/synthesizer.js";
@@ -295,29 +294,22 @@ export async function runMcpServer(cfg) {
         try {
             const slug = kebab(project);
             const file = join(cfg.vaultPath, cfg.outputDir, "projects", `${slug}.md`);
-            if (existsSync(file)) {
-                const content = readFileSync(file, "utf8");
-                const fm = parseFrontmatter(content);
+            // Read-only facade: never generate a summary here — that's an LLM
+            // call and a vault write. If it isn't cached, point the user at the
+            // CLI command that produces it under explicit intent.
+            if (!existsSync(file)) {
                 return ok({
-                    project: slug,
-                    content,
-                    sessions_count: fm.sessions ? Number(fm.sessions) : null,
-                    generated: fm.generated ?? null,
+                    error: `Project summary not yet generated. Run: vir summarize ${slug}`,
+                    project_slug: slug,
                 });
             }
-            // Not cached — generate fresh. summarizeProject only reads the DB and
-            // writes a vault markdown file, so the read-only DB constraint holds.
-            const res = await summarizeProject(cfg, slug, db);
-            if (!res) {
-                return fail(`no distilled notes for project '${slug}'`);
-            }
-            const content = readFileSync(res.path, "utf8");
+            const content = readFileSync(file, "utf8");
             const fm = parseFrontmatter(content);
             return ok({
                 project: slug,
                 content,
-                sessions_count: res.counts.total,
-                generated: fm.generated ?? new Date().toISOString(),
+                sessions_count: fm.sessions ? Number(fm.sessions) : null,
+                generated: fm.generated ?? null,
             });
         }
         catch (err) {

package/dist/mcp/server.js.map

@@ -1 +1 @@
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package/dist/pipeline/distiller.js

@@ -142,7 +142,11 @@ ${scrubbedContent}`;
         return { classification: cls, markdown: md };
     }
 }
+// One delay per *retry*. Total attempts = 1 initial + 3 retries = 4: the loop
+// below tries-then-sleeps once per entry (3 tries, 3 backoffs), then makes a
+// final 4th attempt after the last sleep. Backoff schedule: 60s / 120s / 240s.
 const RETRY_DELAYS_MS = [60_000, 120_000, 240_000];
+const MAX_ATTEMPTS = RETRY_DELAYS_MS.length + 1;
 // The Kie path (native fetch → HttpError) retries 429 plus transient 5xx.
 // The Anthropic SDK already retries 5xx internally, so on that path we only
 // add 429 on top — never double-retry its 5xx.
@@ -176,10 +180,11 @@ export async function withRateLimitRetry(fn) {
             if (!isRetryable(err))
                 throw err;
             const delay = RETRY_DELAYS_MS[attempt] ?? 240_000;
-            console.warn(`[vir] retryable error (${statusOf(err)}) — retry ${attempt + 1}/${RETRY_DELAYS_MS.length} in ${delay / 1000}s`);
+            console.warn(`[vir] retryable error (${statusOf(err)}) — attempt ${attempt + 1}/${MAX_ATTEMPTS} failed, retrying in ${delay / 1000}s`);
             await sleep(delay);
         }
     }
+    // Final (4th) attempt after the last backoff — let its error propagate.
     return await fn();
 }
 function parseClassification(text, fallbackProject) {

package/dist/pipeline/distiller.js.map

@@ -1 +1 @@
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+{"version":3,"file":"distiller.js","sourceRoot":"","sources":["../../src/pipeline/distiller.ts"],"names":[],"mappings":"AAAA,OAAO,SAAS,MAAM,mBAAmB,CAAC;AAS1C,MAAM,UAAU,GAAe,CAAC,SAAS,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,CAAC,CAAC;AAEzE,MAAM,OAAO,SAAU,SAAQ,KAAK;IAClC,MAAM,CAAS;IACf,YAAY,MAAc,EAAE,OAAe;QACzC,KAAK,CAAC,OAAO,CAAC,CAAC;QACf,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;QACrB,IAAI,CAAC,IAAI,GAAG,WAAW,CAAC;IAC1B,CAAC;CACF;AAED,MAAM,UAAU,oBAAoB,CAAC,MAAc;IACjD,OAAO,IAAI,SAAS,CAAC,EAAE,MAAM,EAAE,MAAM,CAAC,eAAe,IAAI,EAAE,EAAE,CAAC,CAAC;AACjE,CAAC;AAED,2EAA2E;AAC3E,qEAAqE;AACrE,MAAM,UAAU,oBAAoB,CAAC,MAAc;IACjD,OAAO,MAAM,CAAC,QAAQ,KAAK,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,oBAAoB,CAAC,MAAM,CAAC,CAAC;AACzE,CAAC;AAED,sEAAsE;AACtE,0EAA0E;AAC1E,yEAAyE;AACzE,+DAA+D;AAC/D,MAAM,oBAAoB,GAAG,CAAC,kBAAkB,EAAE,mBAAmB,CAAU,CAAC;AAEhF,MAAM,UAAU,kBAAkB,CAAC,KAAa,EAAE,QAAgB;IAChE,IAAI,QAAQ,KAAK,KAAK;QAAE,OAAO,KAAK,CAAC;IACrC,KAAK,MAAM,SAAS,IAAI,oBAAoB,EAAE,CAAC;QAC7C,IAAI,KAAK,CAAC,UAAU,CAAC,SAAS,CAAC;YAAE,OAAO,SAAS,CAAC;IACpD,CAAC;IACD,0DAA0D;IAC1D,OAAO,KAAK,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;AACtC,CAAC;AAWD,KAAK,UAAU,OAAO,CAAC,IAKtB;IACC,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,uCAAuC,EAAE;QACpE,MAAM,EAAE,MAAM;QACd,OAAO,EAAE;YACP,aAAa,EAAE,UAAU,IAAI,CAAC,MAAM,EAAE;YACtC,cAAc,EAAE,kBAAkB;SACnC;QACD,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC;YACnB,KAAK,EAAE,IAAI,CAAC,KAAK;YACjB,UAAU,EAAE,IAAI,CAAC,SAAS;YAC1B,QAAQ,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC;SACnD,CAAC;KACH,CAAC,CAAC;IAEH,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,MAAM,IAAI,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,EAAE,CAAC,CAAC;QACnD,MAAM,IAAI,SAAS,CACjB,QAAQ,CAAC,MAAM,EACf,OAAO,QAAQ,CAAC,MAAM,KAAK,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAChD,CAAC;IACJ,CAAC;IAED,MAAM,IAAI,GAAG,CAAC,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAgB,CAAC;IACpD,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,IAAI,IAAI,EAAE,CAAC;IAC3C,OAAO,IAAI,CAAC;AACd,CAAC;AAED,KAAK,UAAU,aAAa,CAAC,IAK5B;IACC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC;QAC7C,KAAK,EAAE,IAAI,CAAC,KAAK;QACjB,UAAU,EAAE,IAAI,CAAC,SAAS;QAC1B,QAAQ,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC;KACnD,CAAC,CAAC;IACH,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;QACjC,IAAI,KAAK,CAAC,IAAI,KAAK,MAAM;YAAE,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IACpD,CAAC;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAQD,MAAM,CAAC,KAAK,UAAU,OAAO,CAC3B,MAAc,EACd,MAAwB,EACxB,IAAiB;IAEjB,IAAI,MAAM,CAAC,QAAQ,KAAK,KAAK,EAAE,CAAC;QAC9B,OAAO,OAAO,CAAC;YACb,MAAM,EAAE,MAAM,CAAC,SAAS,IAAI,EAAE;YAC9B,KAAK,EAAE,IAAI,CAAC,KAAK;YACjB,SAAS,EAAE,IAAI,CAAC,SAAS;YACzB,MAAM,EAAE,IAAI,CAAC,MAAM;SACpB,CAAC,CAAC;IACL,CAAC;IACD,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,MAAM,IAAI,KAAK,CACb,oEAAoE,CACrE,CAAC;IACJ,CAAC;IACD,OAAO,aAAa,CAAC;QACnB,MAAM;QACN,KAAK,EAAE,IAAI,CAAC,KAAK;QACjB,SAAS,EAAE,IAAI,CAAC,SAAS;QACzB,MAAM,EAAE,IAAI,CAAC,MAAM;KACpB,CAAC,CAAC;AACL,CAAC;AAED,MAAM,OAAO,SAAS;IACZ,MAAM,CAAmB;IACzB,GAAG,CAAS;IACZ,aAAa,CAAS;IACtB,YAAY,CAAS;IAE7B,YAAY,GAAW;QACrB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAC;QACf,IAAI,CAAC,MAAM,GAAG,oBAAoB,CAAC,GAAG,CAAC,CAAC;QACxC,IAAI,CAAC,aAAa,GAAG,kBAAkB,CAAC,GAAG,CAAC,MAAM,CAAC,QAAQ,EAAE,GAAG,CAAC,QAAQ,CAAC,CAAC;QAC3E,IAAI,CAAC,YAAY,GAAG,kBAAkB,CAAC,GAAG,CAAC,MAAM,CAAC,OAAO,EAAE,GAAG,CAAC,QAAQ,CAAC,CAAC;IAC3E,CAAC;IAED,KAAK,CAAC,QAAQ,CACZ,OAAsB,EACtB,eAAuB;QAEvB,MAAM,MAAM,GAAG;;;;;;0BAMO,OAAO,CAAC,WAAW;;;EAG3C,eAAe,EAAE,CAAC;QAEhB,MAAM,IAAI,GAAG,MAAM,kBAAkB,CAAC,GAAG,EAAE,CACzC,OAAO,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,EAAE;YAC7B,MAAM;YACN,KAAK,EAAE,IAAI,CAAC,aAAa;YACzB,SAAS,EAAE,GAAG;SACf,CAAC,CACH,CAAC;QACF,OAAO,mBAAmB,CAAC,IAAI,EAAE,OAAO,CAAC,WAAW,CAAC,CAAC;IACxD,CAAC;IAED,KAAK,CAAC,OAAO,CACX,OAAsB,EACtB,eAAuB,EACvB,GAAmB;QAEnB,MAAM,MAAM,GAAG;;;;;yBAKM,GAAG,CAAC,OAAO,eAAe,GAAG,CAAC,QAAQ,WAAW,OAAO,CAAC,SAAS,IAAI,SAAS;;;;;;;EAOtG,eAAe,EAAE,CAAC;QAEhB,MAAM,IAAI,GAAG,MAAM,kBAAkB,CAAC,GAAG,EAAE,CACzC,OAAO,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,EAAE;YAC7B,MAAM;YACN,KAAK,EAAE,IAAI,CAAC,YAAY;YACxB,SAAS,EAAE,IAAI;SAChB,CAAC,CACH,CAAC;QACF,OAAO,IAAI,CAAC,IAAI,EAAE,CAAC;IACrB,CAAC;IAED,KAAK,CAAC,GAAG,CACP,OAAsB,EACtB,eAAuB,EACvB,eAAuB;QAEvB,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE,eAAe,CAAC,CAAC;QAC1D,IAAI,GAAG,CAAC,UAAU,IAAI,GAAG;YAAE,OAAO,IAAI,CAAC;QACvC,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,eAAe,EAAE,GAAG,CAAC,CAAC;QAC7D,OAAO,EAAE,cAAc,EAAE,GAAG,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC;IAC/C,CAAC;CACF;AAED,8EAA8E;AAC9E,6EAA6E;AAC7E,+EAA+E;AAC/E,MAAM,eAAe,GAAG,CAAC,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;AACnD,MAAM,YAAY,GAAG,eAAe,CAAC,MAAM,GAAG,CAAC,CAAC;AAEhD,0EAA0E;AAC1E,4EAA4E;AAC5E,+CAA+C;AAC/C,MAAM,oBAAoB,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC;AAEhE,MAAM,UAAU,WAAW,CAAC,GAAY;IACtC,IAAI,CAAC,GAAG,IAAI,OAAO,GAAG,KAAK,QAAQ;QAAE,OAAO,KAAK,CAAC;IAClD,IAAI,GAAG,YAAY,SAAS;QAAE,OAAO,oBAAoB,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;IAC1E,IAAI,GAAG,YAAY,SAAS,CAAC,QAAQ;QAAE,OAAO,GAAG,CAAC,MAAM,KAAK,GAAG,CAAC;IACjE,MAAM,CA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package/dist/pipeline/run.js

@@ -82,6 +82,14 @@ export async function runPipeline(cfg, opts = {}) {
                 }
             }
         }
+        // Rewrite mode skips per-note index appends; rebuild index.md once from the
+        // db so it reflects every note exactly once (no log.md append).
+        try {
+            writer.regenerateIndex();
+        }
+        catch (err) {
+            fileLog(`index regeneration failed: ${err.message}`);
+        }
         fileLog(`vir run done — rewriteOnly rewritten=${summary.rewritten} errored=${summary.errored}`);
         if (interactive) {
             ui.blank();
@@ -287,7 +295,7 @@ async function rewriteOne(writer, row) {
         },
         markdown: row.content,
     };
-    return writer.write(parsed, note);
+    return writer.write(parsed, note, "rewrite");
 }
 // Desktop notification, platform-aware and best-effort. macOS uses osascript;
 // Linux uses notify-send when present; every other platform silently skips.

package/dist/pipeline/run.js.map

@@ -1 +1 @@
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package/dist/pipeline/writer.js

@@ -22,7 +22,7 @@ export class VaultWriter {
         this.ensureIndex();
         this.ensureLog();
     }
-    async write(session, note) {
+    async write(session, note, mode = "append") {
         const { classification, markdown } = note;
         const slug = makeSlug(classification.topic, session.sessionId);
         const subDir = CATEGORY_DIR[classification.category];
@@ -47,21 +47,46 @@ export class VaultWriter {
         const finalContent = frontmatter + wikilinkHeader + body + "\n";
         writeFileSync(fullPath, finalContent);
         await this.maybeEmbed(session, note, finalContent);
-        this.appendIndex({
-            date: (session.startedAt ?? new Date().toISOString()).slice(0, 10),
-            topic: classification.topic,
-            category: classification.category,
-            project: classification.project,
-            relPath,
-        });
-        this.appendLog({
-            ts: new Date().toISOString().slice(0, 16).replace("T", " "),
-            category: classification.category,
-            topic: classification.topic,
-            project: classification.project,
-        });
+        // Rewrite mode re-renders existing notes from stored content; the index is
+        // rebuilt wholesale via regenerateIndex() afterward and log.md is left
+        // untouched, so appending per-note here would duplicate every row.
+        if (mode === "append") {
+            this.appendIndex({
+                date: (session.startedAt ?? new Date().toISOString()).slice(0, 10),
+                topic: classification.topic,
+                category: classification.category,
+                project: classification.project,
+                relPath,
+            });
+            this.appendLog({
+                ts: new Date().toISOString().slice(0, 16).replace("T", " "),
+                category: classification.category,
+                topic: classification.topic,
+                project: classification.project,
+            });
+        }
         return [fullPath];
     }
+    // Rebuild index.md from scratch off the distilled rows in SQLite, sorted by
+    // date descending. Used by the --rewrite-only run so re-rendering notes never
+    // appends duplicate index rows. Never touches log.md. No-op without a db.
+    regenerateIndex() {
+        if (!this.db)
+            return;
+        const rows = [...this.db.listDistilled()].sort((a, b) => (b.startedAt ?? "").localeCompare(a.startedAt ?? ""));
+        const header = "# vir — Distilled Knowledge\n\n" +
+            "| Date | Topic | Category | Project | Link |\n" +
+            "|------|-------|----------|---------|------|\n";
+        const body = rows
+            .map((r) => {
+            const date = (r.startedAt ?? "").slice(0, 10);
+            const relPath = join(CATEGORY_DIR[r.category], `${makeSlug(r.topic, r.sessionId)}.md`);
+            const link = `[[${relPath.replace(/\.md$/, "")}|${r.topic}]]`;
+            return `| ${date} | ${r.topic} | ${r.category} | ${r.project} | ${link} |`;
+        })
+            .join("\n");
+        writeFileSync(join(this.root, "index.md"), body.length > 0 ? `${header}${body}\n` : header);
+    }
     // Best-effort: embed the freshly-written note via Ollama and store the
     // vector. Any failure (Ollama down, timeout, model missing) is swallowed —
     // an embedding miss must never fail a write.

package/dist/pipeline/writer.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@djolex999/vir-cli",
-  "version": "0.3.4",
+  "version": "0.3.5",
   "description": "Distills Claude Code sessions into a compounding knowledge vault",
   "author": "Djordje Marković <djordje@growthq.rs>",
   "license": "MIT",
@@ -38,7 +38,7 @@
     "test": "vitest run"
   },
   "engines": {
-    "node": ">=18"
+    "node": ">=20"
   },
   "dependencies": {
     "@anthropic-ai/sdk": "^0.32.1",