npm - @djolex999/vir-cli - Versions diffs - 0.28.0 → 0.29.0 - Mend

@djolex999/vir-cli 0.28.0 → 0.29.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (12) hide show

package/README.md +10 -6
package/dist/cli/embed.js +18 -1
package/dist/cli/embed.js.map +1 -1
package/dist/cli/initConfig.js +3 -0
package/dist/cli/initConfig.js.map +1 -1
package/dist/config.js +57 -19
package/dist/config.js.map +1 -1
package/dist/connect/embed.js +17 -1
package/dist/connect/embed.js.map +1 -1
package/dist/search/retriever.js +27 -19
package/dist/search/retriever.js.map +1 -1
package/package.json +2 -1

package/README.md CHANGED Viewed

@@ -23,7 +23,7 @@ developer-tools, mcp, local-first, cross-platform, llm-wiki
   <a href="https://www.npmjs.com/package/@djolex999/vir-cli"><img src="https://img.shields.io/npm/v/@djolex999/vir-cli?color=7c6af7&label=npm" alt="npm version"></a>
   <a href="https://www.npmjs.com/package/@djolex999/vir-cli"><img src="https://img.shields.io/npm/dw/@djolex999/vir-cli?color=4fd1a0" alt="npm downloads"></a>
   <a href="LICENSE"><img src="https://img.shields.io/badge/license-MIT-22d3ee" alt="license"></a>
-  <a href="#project-status"><img src="https://img.shields.io/badge/tests-1322%20passing-22c55e" alt="tests"></a>
+  <a href="#project-status"><img src="https://img.shields.io/badge/tests-1411%20passing-22c55e" alt="tests"></a>
   <a href="#project-status"><img src="https://img.shields.io/badge/platforms-macOS%20%7C%20Linux-lightgrey" alt="platforms"></a>
   <a href="https://modelcontextprotocol.io"><img src="https://img.shields.io/badge/MCP-server-c084fc" alt="mcp"></a>
   <a href="#"><img src="https://img.shields.io/badge/local--first-yes-f59e0b" alt="local-first"></a>
@@ -197,8 +197,9 @@ worse results, not better."_ Fair. Vir addresses it in layers:
   approve, edit, or reject each one. Verified notes get a ranking boost in
   retrieval (in `vir query` and the MCP server). Rejected notes move to `.rejected/`,
   recoverable, not deleted.
-- **MMR-diverse retrieval.** Queries return notes covering different aspects
-  of the topic, not 5 similar duplicates.
+- **Measured retrieval.** Ranking defaults are set by a retrieval eval over
+  judged queries, not by feel: pure relevance by default, with MMR diversity
+  (`retrievalDiversity`) available when you want it.
 - **Recurring lessons become rules, only with your yes.** `vir connect` looks
   for a lesson you've written down in at least 3 sessions over at least a
   week (by embedding each "What Was Learned" item), and has the model state it
@@ -570,8 +571,11 @@ Every stored vector records the model that produced it. Vectors from
 different models are never compared; if you switch providers,
 `vir embed --force` re-embeds the index after telling you what it costs.
 Falls back to keyword search automatically when no provider is available,
-and says so: `via tfidf (no provider)`. MMR reranking balances relevance
-against diversity, tunable via `retrievalDiversity` (default 0.3).
+and says so: `via tfidf (no provider)`. Results rank by pure relevance by
+default; `retrievalDiversity` (0..1) turns on MMR reranking, which trades
+relevance for diversity. A verified note gets a small boost only when it
+already ranks near the top, so it wins near-ties without displacing more
+relevant notes.
 ## Config reference
@@ -593,7 +597,7 @@ Located at `~/.vir/config.json`.
 | `agentTranscripts`  | `exclude`                   | Headless SDK agent transcripts: `exclude` \| `include`     |
 | `projects`          | (unset)                     | Per-project `include`/`exclude` map; absent = undecided    |
 | `filterToolCalls`   | `moderate`                  | Tool-output filtering: `aggressive` \| `moderate` \| `off` |
-| `retrievalDiversity`| `0.3`                       | MMR diversity (0..1)                                       |
+| `retrievalDiversity`| `0`                         | MMR diversity (0..1); 0 = pure relevance                   |
 | `logQueries`        | `true`                      | Log retrievals to `~/.vir/queries.jsonl`; `false` = off    |
 | `embeddingProvider` | (unset)                     | `ollama` \| `local` \| `none`; unset = auto-detect         |
 | `models.classify`   | `claude-haiku-5-5`          | Classify model (Kie keeps Haiku 4.5)                       |

package/dist/cli/embed.js CHANGED Viewed

@@ -4,6 +4,7 @@ import { join } from "node:path";
 import { loadConfig } from "../config.js";
 import { embedNoteWithProvider, resolveEmbeddingProvider, } from "../search/provider.js";
 import { runEmbedSetup } from "./embedSetup.js";
+import { insightEmbedTargets, insightEmbeddingText } from "../connect/embed.js";
 import { StateDb } from "../state/db.js";
 import * as ui from "../ui/display.js";
 import { VaultWriter } from "../pipeline/writer.js";
@@ -37,6 +38,8 @@ export async function embedCommand(opts) {
             ...db.getTopicEmbeddings(root, cfg.topicsDir),
             ...db.getPdfEmbeddings(),
         ];
+        // Accepted rules are left out of this count: like the `vir run` sweep,
+        // this command re-embeds an off-model rule without --force (below).
         // Crossing a model boundary is an index invalidation, not a gap fill —
         // it needs --force AND explicit consent, with the cost stated first.
         // Without --force, mismatched rows stay excluded from vector search
@@ -92,10 +95,14 @@ export async function embedCommand(opts) {
                 content: p.content,
             }))
             : db.listPdfEmbeddingTargets();
+        // Accepted connect-pass rules are served by search too, so a model switch
+        // must carry them over like every other layer.
+        const insightTargets = insightEmbedTargets(db, provider.modelName, opts.force === true);
         const total = target.length +
             topicTargets.length +
             articleTargets.length +
-            pdfTargets.length;
+            pdfTargets.length +
+            insightTargets.length;
         if (total === 0) {
             ui.row(ui.success(ui.CHECK), ui.text("all notes already embedded"));
             return;
@@ -163,6 +170,16 @@ export async function embedCommand(opts) {
             embedded += 1;
             sp.text = ui.dim(`embedding notes (${embedded}/${total})`);
         }
+        for (const r of insightTargets) {
+            const vec = await embedNoteWithProvider(provider, insightEmbeddingText(r));
+            if (!vec) {
+                errors += 1;
+                continue;
+            }
+            db.setInsightEmbedding(r.id, vec, provenance);
+            embedded += 1;
+            sp.text = ui.dim(`embedding notes (${embedded}/${total})`);
+        }
         sp.succeed(ui.text(`embedded ${embedded} notes`));
         ui.blank();
         ui.divider();

package/dist/cli/embed.js.map CHANGED Viewed

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1	+ 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package/dist/cli/initConfig.js CHANGED Viewed

@@ -39,6 +39,9 @@ export function buildInitConfig(existing, a) {
         logQueries: existing?.logQueries,
         // Wizard-silent connect-pass knob.
         connectMaxCandidates: existing?.connectMaxCandidates,
+        // Migration marker: saveConfig stamps the current version anyway; carried
+        // so a built config never reads as pre-migration.
+        configVersion: existing?.configVersion,
         projects: { ...existing?.projects, ...a.projects },
         notifications: existing?.notifications,
         workflowTranscripts: existing?.workflowTranscripts,

package/dist/cli/initConfig.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/config.js CHANGED Viewed

@@ -101,13 +101,18 @@ export const ConfigSchema = z
     // Max LLM calls one `vir connect` run may make (one per candidate rule).
     connectMaxCandidates: z.number().int().positive().default(10),
     // MMR diversity weight for `vir query` / `vir_query` retrieval. Applied in
-    // the embedding path only (TF-IDF is too sparse to benefit).
+    // the embedding path only (TF-IDF is too sparse to benefit). Default 0
+    // since 0.29.0: on the 2026-10-16 retrieval eval, MMR at 0.3 lowered
+    // nDCG@8 for both nomic (-0.089) and bge (-0.079), and under nomic it
+    // rewarded off-topic outliers for being dissimilar.
     retrievalDiversity: z
         .number()
         .min(0)
         .max(1)
-        .default(0.3)
-        .describe("MMR diversity parameter. 0.0 = pure relevance, 1.0 = pure diversity. Default 0.3 favors relevance with moderate diversity."),
+        .default(0)
+        .describe("MMR diversity parameter. 0.0 = pure relevance (default), 1.0 = pure diversity."),
+    // Schema migrations applied (migrateConfigJson). Absent = before 0.29.0.
+    configVersion: z.number().int().nonnegative().optional(),
     models: z
         .object({
         classify: z.string().default("claude-haiku-5-5"),
@@ -211,6 +216,41 @@ export function ensureVirDir() {
 export function configExists() {
     return existsSync(CONFIG_PATH);
 }
+// Bumped when a stored value must change meaning on upgrade. saveConfig
+// persists every defaulted field, so a changed default alone never reaches an
+// existing install: the old default is already written into its config.json.
+export const CONFIG_VERSION = 1;
+// Pure: brings a decoded config.json up to CONFIG_VERSION. Each step runs once;
+// the stamped version keeps a value the user sets afterwards from being
+// migrated again.
+export function migrateConfigJson(raw) {
+    const from = typeof raw["configVersion"] === "number" ? raw["configVersion"] : 0;
+    if (from >= CONFIG_VERSION)
+        return { json: raw, changed: false };
+    const json = { ...raw };
+    // v1 (0.29.0): 0.3 was the persisted MMR default, not a choice. A user who
+    // picked exactly 0.3 is reset once; the changelog says so.
+    if (from < 1 && json["retrievalDiversity"] === 0.3)
+        json["retrievalDiversity"] = 0;
+    json["configVersion"] = CONFIG_VERSION;
+    return { json, changed: true };
+}
+function writeConfigFile(json) {
+    // config.json contains API keys — owner read/write only, from the first
+    // byte. Writing in place created the file with the default umask (often
+    // 0644) and left an existing file's wider mode in place until the chmod.
+    // A 0600 temp file renamed over it is never readable by anyone else.
+    const tmp = `${CONFIG_PATH}.${process.pid}.tmp`;
+    try {
+        writeFileSync(tmp, JSON.stringify(json, null, 2), { mode: 0o600 });
+        chmodSync(tmp, 0o600);
+        renameSync(tmp, CONFIG_PATH);
+    }
+    catch (err) {
+        rmSync(tmp, { force: true });
+        throw err;
+    }
+}
 export function loadConfig() {
     if (!existsSync(CONFIG_PATH)) {
         throw new Error(`Config not found at ${CONFIG_PATH}. Run \`vir init\` first.`);
@@ -224,8 +264,18 @@ export function loadConfig() {
     catch {
         // ignore — a failed chmod must never block loading config
     }
-    const raw = readFileSync(CONFIG_PATH, "utf8");
-    const parsed = ConfigSchema.parse(JSON.parse(raw));
+    const decoded = JSON.parse(readFileSync(CONFIG_PATH, "utf8"));
+    const { json, changed } = migrateConfigJson(decoded);
+    if (changed) {
+        try {
+            // The user's own file shape, plus the migration — no defaults filled in.
+            writeConfigFile(json);
+        }
+        catch {
+            // A read-only config still loads migrated; the migration reruns next load.
+        }
+    }
+    const parsed = ConfigSchema.parse(json);
     return {
         ...parsed,
         vaultPath: expandHome(parsed.vaultPath),
@@ -246,19 +296,7 @@ export function saveConfig(cfg) {
     if (!existsSync(dirname(CONFIG_PATH))) {
         mkdirSync(dirname(CONFIG_PATH), { recursive: true });
     }
-    // config.json contains API keys — owner read/write only, from the first
-    // byte. Writing in place created the file with the default umask (often
-    // 0644) and left an existing file's wider mode in place until the chmod.
-    // A 0600 temp file renamed over it is never readable by anyone else.
-    const tmp = `${CONFIG_PATH}.${process.pid}.tmp`;
-    try {
-        writeFileSync(tmp, JSON.stringify(cfg, null, 2), { mode: 0o600 });
-        chmodSync(tmp, 0o600);
-        renameSync(tmp, CONFIG_PATH);
-    }
-    catch (err) {
-        rmSync(tmp, { force: true });
-        throw err;
-    }
+    // A config written by this build is current by definition.
+    writeConfigFile({ ...cfg, configVersion: CONFIG_VERSION });
 }
 //# sourceMappingURL=config.js.map

package/dist/config.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/connect/embed.js CHANGED Viewed

@@ -30,6 +30,22 @@ opts = {}) {
     }
     return out;
 }
+// What every path embeds for a rule: accept time, the sweep, and `vir embed`.
+export function insightEmbeddingText(t) {
+    return `${t.rule}\n${t.why}`;
+}
+// Accepted rules `vir embed` should (re-)embed under `model`: with force,
+// every accepted rule; otherwise those with no vector or another model's.
+// A model switch through `vir embed --force` previously skipped rules, so they
+// dropped out of search until the next `vir run` sweep.
+export function insightEmbedTargets(db, model, force) {
+    if (!force)
+        return db.listInsightEmbeddingTargets(model);
+    return db
+        .listInsights()
+        .filter((i) => i.status === "accepted")
+        .map((i) => ({ id: i.id, rule: i.rule, why: i.why }));
+}
 // Self-heal for accepted rules: embedded at accept time, but a provider outage
 // then, or a later model switch, would leave them out of embedding search.
 // Best-effort — a failed embed is retried on the next sweep. Returns the count.
@@ -38,7 +54,7 @@ export async function backfillInsightEmbeddings(db, provider) {
     for (const t of db.listInsightEmbeddingTargets(provider.modelName)) {
         let vec;
         try {
-            vec = (await provider.embedDoc(`${t.rule}\n${t.why}`)).embedding;
+            vec = (await provider.embedDoc(insightEmbeddingText(t))).embedding;
         }
         catch {
             continue;

package/dist/connect/embed.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/search/retriever.js CHANGED Viewed

@@ -16,6 +16,19 @@ const SKIP_DIRS = new Set(["summaries", ".rejected", "archived"]);
 // above unverified auto-distillations of comparable relevance. Applied before
 // the topK slice in both the embedding and TF-IDF paths.
 const VERIFIED_BOOST = 0.2;
+// The boost breaks near-ties; it must not carry a weakly related note past
+// everything else. Only candidates already in the top
+// VERIFIED_WINDOW_FACTOR × topK by raw score are eligible for it.
+const VERIFIED_WINDOW_FACTOR = 2;
+// Returns a copy, sorted by raw score, with `boost` added to verified items
+// inside the top `window`. A flat boost on every candidate let one accepted
+// rule rank 1–2 for nearly every nomic query (cosines cluster high, so +0.2
+// outweighs real relevance differences), garbage queries included.
+export function boostVerifiedInWindow(items, window, boost = VERIFIED_BOOST) {
+    return [...items]
+        .sort((a, b) => b.score - a.score)
+        .map((it, i) => (it.verified && i < window ? { ...it, score: it.score + boost } : it));
+}
 // Cheap frontmatter check — true only when the YAML block has `verified: true`.
 // Exported so the query log records per-hit verified status without a second
 // drift-prone reimplementation (the kebabLite lesson).
@@ -25,8 +38,9 @@ export function isVerified(raw) {
         return false;
     return /(^|\n)\s*verified:\s*true\s*(\r?\n|$)/i.test(m[1]);
 }
-// Verified notes get +VERIFIED_BOOST, pushing human-approved knowledge to the
-// top of results over unverified auto-distillations of similar relevance.
+// Verified notes get +VERIFIED_BOOST when they already rank in the top
+// 2×topK, pushing human-approved knowledge above unverified auto-distillations
+// of similar relevance.
 export async function search(cfg, db, query, topK = 8) {
     return (await searchWithOutcome(cfg, db, query, topK)).hits;
 }
@@ -117,7 +131,7 @@ async function searchByEmbedding(cfg, db, query, topK, provider) {
     // unverified one just outside the window. Reads are bounded to docs above the
     // cosine floor (a personal-scale vault), and the content is reused for hits.
     const minScore = thresholdsFor(provider.modelName).minEmbeddingScore;
-    const enriched = [];
+    const raw = [];
     for (const r of rows) {
         const s = cosineSimilarity(queryVec, r.embedding);
         if (s < minScore)
@@ -131,9 +145,9 @@ async function searchByEmbedding(cfg, db, query, topK, provider) {
         }
         if (content.length === 0)
             continue;
-        const score = isVerified(content) ? s + VERIFIED_BOOST : s;
-        enriched.push({ row: r, content, score });
+        raw.push({ row: r, content, score: s, verified: isVerified(content) });
     }
+    const enriched = boostVerifiedInWindow(raw, VERIFIED_WINDOW_FACTOR * topK);
     // MMR reranks the relevance-sorted pool to balance relevance against diversity
     // so results cover different facets of the query, not 5 near-duplicates. The
     // candidate has the embedding it needs to diversify; docId carries the file
@@ -297,21 +311,15 @@ export function searchTfIdf(docs, query, topK = 8) {
             const tfNorm = tf / Math.max(1, d.tokens.length);
             score += tfNorm * idf;
         }
-        if (score > 0) {
-            // Boost only docs that already match the query (score > 0) so a verified
-            // note can't surface on zero lexical overlap.
-            if (isVerified(d.raw))
-                score += VERIFIED_BOOST;
-            scored.push({
-                relPath: d.relPath,
-                title: d.title,
-                raw: d.raw,
-                score: Math.round(score * 10000) / 10000,
-            });
-        }
+        // Only docs that already match the query (score > 0) are candidates, so a
+        // verified note can't surface on zero lexical overlap.
+        if (score > 0)
+            scored.push({ relPath: d.relPath, title: d.title, raw: d.raw, score, verified: isVerified(d.raw) });
     }
-    scored.sort((a, b) => b.score - a.score);
-    return scored.slice(0, topK);
+    return boostVerifiedInWindow(scored, VERIFIED_WINDOW_FACTOR * topK)
+        .sort((a, b) => b.score - a.score)
+        .slice(0, topK)
+        .map(({ relPath, title, raw, score }) => ({ relPath, title, raw, score: Math.round(score * 10000) / 10000 }));
 }
 function walk(dir, acc) {
     let entries;

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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@djolex999/vir-cli",
-  "version": "0.28.0",
+  "version": "0.29.0",
   "description": "An LLM Wiki for Claude Code, in your Obsidian vault.",
   "author": "Djordje Marković <djordje@growthq.rs>",
   "license": "MIT",
@@ -48,6 +48,7 @@
     "eval:build": "tsc -p eval/tsconfig.json",
     "eval": "npm run eval:build --silent && node eval/dist/eval/main.js",
     "eval:spotcheck": "npm run eval --silent -- spotcheck",
+    "eval:analyze": "uv run --project eval/analysis --quiet vir-eval-analysis",
     "distill:ab": "npm run eval:build --silent && node eval/dist/eval/distill/main.js",
     "distill:grade": "npm run eval:build --silent && node eval/dist/eval/distill/main.js grade",
     "distill:quick": "npm run eval:build --silent && node eval/dist/eval/distill/main.js quick"