@djolex999/vir-cli 0.24.2 → 0.25.0

package/README.md

@@ -5,7 +5,8 @@
 <h1 align="center">vir</h1>
 
 <p align="center">
-  An LLM Wiki for Claude Code, in your Obsidian vault.
+  Karpathy's LLM Wiki, built automatically from your Claude Code sessions.<br>
+  Plain markdown you own: best in Obsidian, fine without it.
 </p>
 
 <p align="center">
@@ -22,7 +23,7 @@ developer-tools, mcp, local-first, cross-platform, llm-wiki
   <a href="https://www.npmjs.com/package/@djolex999/vir-cli"><img src="https://img.shields.io/npm/v/@djolex999/vir-cli?color=7c6af7&label=npm" alt="npm version"></a>
   <a href="https://www.npmjs.com/package/@djolex999/vir-cli"><img src="https://img.shields.io/npm/dw/@djolex999/vir-cli?color=4fd1a0" alt="npm downloads"></a>
   <a href="LICENSE"><img src="https://img.shields.io/badge/license-MIT-22d3ee" alt="license"></a>
-  <a href="#project-status"><img src="https://img.shields.io/badge/tests-612%20passing-22c55e" alt="tests"></a>
+  <a href="#project-status"><img src="https://img.shields.io/badge/tests-1217%20passing-22c55e" alt="tests"></a>
   <a href="#project-status"><img src="https://img.shields.io/badge/platforms-macOS%20%7C%20Linux-lightgrey" alt="platforms"></a>
   <a href="https://modelcontextprotocol.io"><img src="https://img.shields.io/badge/MCP-server-c084fc" alt="mcp"></a>
   <a href="#"><img src="https://img.shields.io/badge/local--first-yes-f59e0b" alt="local-first"></a>
@@ -56,7 +57,7 @@ vir init
 vir run
 ```
 
-`vir init` is a wizard: provider, models, vault path. `vir run` does one pass
+`vir init` is a wizard: provider, models, notes folder. `vir run` does one pass
 over your sessions and writes notes. When you like the output,
 `vir schedule install` registers a daemon that keeps the vault current.
 
@@ -87,7 +88,7 @@ Claude Code sessions
       ↓
      vir
       ↓
-Obsidian vault
+markdown notes (Obsidian vault optional)
       ↓
   CLAUDE.md
       ↓
@@ -112,12 +113,15 @@ Several open source implementations of this pattern now exist
 [nashsu/llm_wiki](https://github.com/nashsu/llm_wiki) among them). Each takes
 a different shape.
 
-Vir is the Obsidian-native one. It treats Obsidian as the primary frontend,
-not just a storage location: a sidebar plugin
+Vir is the one built from your own coding sessions, and it is Obsidian-native
+when you want it. In Obsidian it is a frontend, not just a storage location: a
+sidebar plugin
 ([vir-obsidian](https://github.com/djolex999/vir-obsidian)),
 dataview-compatible frontmatter, wikilinked notes that show up in the graph.
 It reads AI coding session transcripts retroactively, so months of existing
-history become a queryable knowledge base in one run.
+history become a queryable knowledge base in one run. Without Obsidian it is a
+folder of markdown, and `vir query` and the MCP server work with no editor at
+all.
 
 [Karpathy's post →](https://x.com/karpathy/status/2039805659525644595)
 
@@ -141,16 +145,25 @@ worse results, not better."_ Fair. Vir addresses it in layers:
 - **Opt-in `CLAUDE.md` sync.** Nothing vir generates touches your prompt
   context automatically. `vir sync-claude` shows a diff and waits for your
   confirmation. You decide what reaches Claude.
-- **Plain markdown output.** Every note is a file in your Obsidian vault. Read
+- **Plain markdown output.** Every note is a file in your notes folder. Read
   it, edit it, delete it. Nothing is hidden in a database you can't inspect.
 - **Lint and dedupe.** `vir lint` flags contradictions and stale notes;
   `vir dedupe` merges near-duplicate notes that have drifted apart.
 - **Active learning** via `vir review`. Walk through new distillations and
-  approve, edit, or reject each one. Verified notes rank first in retrieval
-  (in `vir query` and the MCP server). Rejected notes move to `.rejected/`,
+  approve, edit, or reject each one. Verified notes get a ranking boost in
+  retrieval (in `vir query` and the MCP server). Rejected notes move to `.rejected/`,
   recoverable, not deleted.
 - **MMR-diverse retrieval.** Queries return notes covering different aspects
   of the topic, not 5 similar duplicates.
+- **Recurring lessons become rules, only with your yes.** `vir connect` looks
+  for a lesson you've written down in at least 3 sessions over at least a
+  week (by embedding each "What Was Learned" item), and has the model state it
+  as one rule, with a verbatim quote from every note it cites; quotes that
+  aren't in the note are thrown out. Proposed rules live in `insights/rules/`,
+  stay out of search until you accept them in `vir review --insights`, and
+  reach CLAUDE.md only through `vir sync-claude`, which asks about each rule
+  separately and never adds one under `--force`. Rejected rules stay rejected
+  even after the source notes are rewritten. Needs an embedding provider.
 - **Topic synthesis** via `vir compose "<topic>"`. Embedding-searches the
   vault for related notes and synthesizes them into a single topic page under
   `topics/`, with each source wikilinked so it backlinks in Obsidian's graph.
@@ -206,8 +219,8 @@ Different tools for different needs:
   capture and vector storage, use claude-mem.
 - **If you're building AI applications that need to remember users**
   long-term, use mem0 (different layer entirely).
-- **If you want an Obsidian-native LLM Wiki** that reads your existing Claude
-  Code sessions, use vir.
+- **If you want an LLM Wiki that reads your existing Claude Code sessions**,
+  Obsidian-native or just a folder of markdown, use vir.
 
 ## Numbers from a real run
 
@@ -224,7 +237,8 @@ Output from my first run across 226 Claude Code sessions:
 
 Other LLM Wiki implementations would produce similar results with the same
 input. The distinguishing question for vir is workflow fit: does
-Obsidian-native plus retroactive match how you actually work?
+retroactive distillation of your own sessions, Obsidian-native when you want
+it, match how you actually work?
 
 Example query against the distilled vault:
 
@@ -255,13 +269,28 @@ sources 4 · via embedding · searched 126
 - macOS or Linux (systemd or cron)
 - Node.js 20+
 - Claude Code (sessions at `~/.claude/projects/`)
-- Obsidian vault
+- A folder for notes. An Obsidian vault works great but is optional; see
+  [Without Obsidian](#without-obsidian).
 - A distill provider — any one of:
   - Anthropic API key (predictable per-session cost, no effect on your Claude Code limits)
   - Your Claude Code subscription (`provider: "claude-cli"` — free and keyless; distills consume your Claude Code usage limits)
   - Kie.ai API key (~72% cheaper, third-party proxy — used for testing and calibration runs, not recommended for your real vault)
 - Optional: Ollama + `nomic-embed-text` for semantic search
 
+
+## Without Obsidian
+
+vir writes plain markdown with YAML frontmatter. Obsidian is the nicest way to
+browse it, but nothing depends on it:
+
+- **Any editor works.** Notes are ordinary `.md` files under `<notes folder>/vir/`.
+  `[[wikilinks]]` read fine as text, and VS Code with Foam or Markdown Memo
+  resolves them as links.
+- **No editor needed for retrieval.** `vir query "<question>"` and the MCP server
+  (`vir mcp install`) search the folder directly.
+- **Point `vir init` at any folder.** If no Obsidian vault exists, it suggests
+  `~/notes` and creates it.
+
 ## Cost
 
 Vir runs two API calls per session: a Haiku classify (cheap) and a distill
@@ -363,6 +392,8 @@ with your distro, init system, and Node version.
 | `vir query "<question>"`    | cheap | Semantic search your vault                |
 | `vir queries`               | free  | Retrieval report: method split, degraded rate, dead-weight notes |
 | `vir compose "<topic>"`     | $$    | Synthesize a topic page from related notes |
+| `vir connect --dry-run`     | free  | Find lessons you keep re-learning; show candidates + cost |
+| `vir connect`               | $     | Propose those lessons as cited rules (≤10 LLM calls) |
 | `vir summarize <project>`   | cheap | Cross-session project synthesis           |
 | `vir summarize --week`      | cheap | Period summary of the week's notes        |
 | `vir lint`                  | cheap | Find orphans, stale notes, contradictions |
@@ -372,6 +403,7 @@ with your distro, init system, and Node version.
 | `vir audit`                 | cheap | Model judges each note; verdicts feed `vir review --audited` |
 | `vir audit --dry-run`       | free  | Notes, batches and est. cost, no model call |
 | `vir review --audited`      | free  | Walk notes vir audit flagged, worst first |
+| `vir review --insights`     | free  | Accept, edit or reject rules proposed by `vir connect` |
 | `vir audit --apply-rejects` | free  | Move fresh reject verdicts to `.rejected/` (reversible) |
 | `vir lint --strays`         | free  | Note files with no live DB row (retitle debris) |
 | `vir lint --strays --fix`   | free  | Move retitle debris to `archived/` (only when a live copy exists) |
@@ -395,6 +427,23 @@ run `vir <command> --help` for the full flag list. `vir query --json` and
 `vir doctor --json` are the machine contracts the
 [vir-obsidian](https://github.com/djolex999/vir-obsidian) plugin consumes.
 
+## Use vir from any agent (skill)
+
+vir ships an [Agent Skills](https://agentskills.io) skill that teaches Claude
+Code, Codex, Cursor and other skill-aware agents to check your notes before
+they work: search with `vir query --json` (free, no LLM call), cite the notes
+they use, and verify them against the current code.
+
+```bash
+npx skills add djolex999/vir
+```
+
+The skill is read-only. It never writes your notes, never runs paid commands
+like `vir run` unless you ask, and if vir isn't installed it tells you how to
+set it up instead of installing it. It prefers the MCP server when that's
+registered, and falls back to reading the notes folder directly. Source:
+[`skills/vir/SKILL.md`](skills/vir/SKILL.md).
+
 ## MCP server (Claude Code integration)
 
 Vir runs as an MCP server, letting Claude Code consult your vault mid-session
@@ -408,8 +457,8 @@ Restart Claude Code. The vault is now queryable mid-session via six tools:
 `vir_query`, `vir_status`, `vir_recent_notes`, `vir_recent_articles`,
 `vir_project_summary`, `vir_compose`. `vir_query` takes a `type` filter
 (`session` | `article` | `topic` | `pdf` | `all`). Human-verified notes
-(approved via `vir review`) rank first; pass `verified_only: true` to see
-only those. The server never writes the vault. `vir_query` is the one tool
+(approved via `vir review`) get a +0.2 score boost; pass `verified_only: true`
+to see only those. The server never writes the vault. `vir_query` is the one tool
 that spends tokens: it synthesizes an answer with your provider, and
 `synthesize: false` returns just the matching notes.
 
@@ -456,7 +505,7 @@ Located at `~/.vir/config.json`.
 
 | Field               | Default                     | Description                                                |
 | ------------------- | --------------------------- | ---------------------------------------------------------- |
-| `vaultPath`         | (required)                  | Absolute path to Obsidian vault                            |
+| `vaultPath`         | (required)                  | Absolute path to your notes folder (Obsidian vault optional) |
 | `outputDir`         | `vir`                       | Subdir inside vault                                        |
 | `claudeProjectsDir` | `~/.claude/projects`        | Claude Code sessions                                       |
 | `cadenceHours`      | `3`                         | Daemon run frequency (hours)                               |
@@ -524,8 +573,8 @@ improvements. Delete it any time; disable it with `"logQueries": false` in
 
 |                |                                           |
 | -------------- | ----------------------------------------- |
-| Version        | 0.22.0                                    |
-| Tests          | 887 passing                               |
+| Version        | 0.24.2                                    |
+| Tests          | 1073 passing                              |
 | Platforms      | macOS (launchd), Linux (systemd/cron)     |
 | Node           | 20+                                       |
 | First-run cost | $1 to $5 (Kie.ai optional, ~72% cheaper)  |
@@ -536,7 +585,7 @@ improvements. Delete it any time; disable it with `"logQueries": false` in
 Shipped:
 
 - [x] Linux support (systemd timer + cron fallback), experimental
-- [x] Active learning: `vir review`, verified notes ranked first in retrieval
+- [x] Active learning: `vir review`, verified notes boosted in retrieval
 - [x] Web article ingestion (Obsidian Web Clipper folder → same vault)
 - [x] PDF and paper ingestion
 - [x] Obsidian plugin: [vir-obsidian](https://github.com/djolex999/vir-obsidian), sidebar queries against the vault

package/dist/claude/updater.js

@@ -1,15 +1,68 @@
 import { chmodSync, existsSync, readdirSync, readFileSync, realpathSync, renameSync, rmSync, statSync, writeFileSync, } from "node:fs";
 import { homedir } from "node:os";
 import { join } from "node:path";
+import { ruleText } from "../connect/text.js";
 import { kebab } from "../pipeline/writer.js";
 export const VIR_START = "<!-- VIR:START -->";
 export const VIR_END = "<!-- VIR:END -->";
 const TOP_N_PER_CATEGORY = 5;
-export function planUpdates(_cfg, db, options = {}) {
+// Which CLAUDE.md a rule's scope lands in, limited to the targets planUpdates
+// builds this run (a project with no distilled notes has no plan).
+function ruleTarget(scope, options, projectSlugs) {
+    if (scope === "global")
+        return options.project ? null : globalClaudePath();
+    if (!scope.startsWith("project:") || options.globalOnly)
+        return null;
+    const slug = scope.slice("project:".length);
+    if (options.project && slug !== options.project)
+        return null;
+    return projectSlugs.has(slug) ? projectClaudePath(slug) : null;
+}
+function projectSlugsOf(rows) {
+    return new Set(rows.map((r) => kebab(r.project)).filter((s) => s.length > 0));
+}
+// Accepted rules not yet promoted or declined, one per target — each becomes
+// its own y/n hunk in sync-claude. Never includes proposed or rejected rules.
+export function planRules(db, options = {}) {
+    const slugs = projectSlugsOf(db.listDistilled());
+    const out = [];
+    for (const insight of db.listInsights()) {
+        if (insight.status !== "accepted" || insight.promotion !== "none")
+            continue;
+        const target = ruleTarget(insight.scope, options, slugs);
+        if (target !== null)
+            out.push({ target, insight });
+    }
+    return out;
+}
+export function renderRuleHunk(c) {
+    const sources = c.insight.evidence
+        .map((e) => `[[${e.citeSlug}]] (${e.project || "-"}, ${e.date.slice(0, 10)})`)
+        .join(", ");
+    return [`+ - rule: ${ruleText(c.insight.rule)}`, `  why: ${ruleText(c.insight.why)}`, `  sources: ${sources}`].join("\n");
+}
+export function planUpdates(_cfg, db, options = {}, 
+// Rules approved interactively THIS run; rendered alongside promoted ones.
+approvedRuleIds = new Set()) {
     const rows = db.listDistilled();
     const plans = [];
+    const slugs = projectSlugsOf(rows);
+    const rulesByTarget = new Map();
+    for (const ins of db.listInsights()) {
+        if (ins.status !== "accepted")
+            continue;
+        if (ins.promotion !== "promoted" && !(ins.promotion === "none" && approvedRuleIds.has(ins.id)))
+            continue;
+        const target = ruleTarget(ins.scope, options, slugs);
+        if (target === null)
+            continue;
+        const list = rulesByTarget.get(target) ?? [];
+        list.push({ id: ins.id, rule: ins.rule });
+        rulesByTarget.set(target, list);
+    }
     if (!options.project) {
-        plans.push(buildPlan(globalClaudePath(), rows, { scope: "global" }));
+        const target = globalClaudePath();
+        plans.push(buildPlan(target, rows, { scope: "global" }, rulesByTarget.get(target) ?? []));
     }
     if (options.globalOnly)
         return plans;
@@ -29,13 +82,13 @@ export function planUpdates(_cfg, db, options = {}) {
     }
     for (const [slug, projectRows] of byProject) {
         const target = projectClaudePath(slug);
-        plans.push(buildPlan(target, projectRows, { scope: { project: slug } }));
+        plans.push(buildPlan(target, projectRows, { scope: { project: slug } }, rulesByTarget.get(target) ?? []));
     }
     return plans;
 }
-function buildPlan(target, rows, meta) {
+function buildPlan(target, rows, meta, rules = []) {
     const entries = selectTopEntries(rows);
-    const newBlock = renderBlock(entries);
+    const newBlock = renderBlock(entries, rules);
     const existsAtPath = existsSync(target);
     let existingBlock = "";
     let lastUpdated = null;
@@ -50,7 +103,14 @@ function buildPlan(target, rows, meta) {
         }
     }
     const oldEntries = parseEntries(existingBlock);
-    const diff = computeDiff(oldEntries, entries);
+    const oldRules = parseRules(existingBlock);
+    const oldIds = new Set(oldRules.map((r) => r.id));
+    const newIds = new Set(rules.map((r) => r.id));
+    const diff = {
+        ...computeDiff(oldEntries, entries),
+        rulesAdded: rules.filter((r) => !oldIds.has(r.id)),
+        rulesRemoved: oldRules.filter((r) => !newIds.has(r.id)),
+    };
     return {
         target,
         exists: existsAtPath,
@@ -91,7 +151,7 @@ function selectTopEntries(rows) {
     }
     return out;
 }
-function renderBlock(entries) {
+export function renderBlock(entries, rules = []) {
     const today = new Date().toISOString().slice(0, 10);
     const lines = [];
     lines.push(VIR_START);
@@ -126,9 +186,25 @@ function renderBlock(entries) {
         }
         lines.push("");
     }
+    if (rules.length > 0) {
+        lines.push("## Rules (from vir)");
+        lines.push("");
+        for (const r of rules)
+            lines.push(`- rule: ${ruleText(r.rule)} <!-- vir-rule:${r.id} -->`);
+        lines.push("");
+    }
     lines.push(VIR_END);
     return lines.join("\n");
 }
+function parseRules(block) {
+    const out = [];
+    for (const line of block.split("\n")) {
+        const m = line.match(/^- rule: (.+) <!-- vir-rule:([A-Za-z0-9-]+) -->$/);
+        if (m?.[1] !== undefined && m[2] !== undefined)
+            out.push({ id: m[2], rule: m[1] });
+    }
+    return out;
+}
 function extractBlock(raw) {
     const start = raw.indexOf(VIR_START);
     const end = raw.indexOf(VIR_END);

package/dist/claude/updater.js.map

@@ -1 +1 @@
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package/dist/cli/connect.js

@@ -0,0 +1,100 @@
+import confirm from "@inquirer/confirm";
+import { loadConfig } from "../config.js";
+import { runConnect } from "../connect/run.js";
+import { computeCost, resolvePricing } from "../cost/pricing.js";
+import { callLLM, maybeAnthropicClient, normalizeModelName, resolveModelShorthand, withRateLimitRetry, } from "../pipeline/distiller.js";
+import { resolveActiveProviderCached } from "../search/provider.js";
+import { StateDb } from "../state/db.js";
+import * as ui from "../ui/display.js";
+const VERIFY_MAX_TOKENS = 1200;
+export function formatConnectSummary(s, dryRun, opts = {}) {
+    const lines = [`${s.lessons} lessons · ${s.clusters} clusters · ${s.candidates} candidates`];
+    const skipped = [];
+    if (s.unchanged > 0)
+        skipped.push(`${s.unchanged} unchanged`);
+    if (s.skippedRejected > 0)
+        skipped.push(`${s.skippedRejected} previously rejected`);
+    if (skipped.length > 0)
+        lines.push(`skipped: ${skipped.join(" · ")}`);
+    if (s.deferred > 0)
+        lines.push(`${s.deferred} deferred (connectMaxCandidates)`);
+    if (dryRun) {
+        const calls = s.candidates - s.deferred;
+        lines.push(opts.quota === true
+            ? `${calls} LLM call(s) on your Claude Code subscription quota`
+            : s.estCostUsd === null
+                ? `${calls} LLM call(s), cost unknown (no price for this model)`
+                : `up to $${s.estCostUsd.toFixed(2)} for ${calls} LLM call(s)`);
+        return lines;
+    }
+    const out = [`${s.proposed} proposed`, `${s.updated} updated`];
+    if (s.additionsFlagged > 0)
+        out.push(`${s.additionsFlagged} accepted rule(s) with new evidence`);
+    if (s.unverified > 0)
+        out.push(`${s.unverified} unverified`);
+    if (s.llmFailures > 0)
+        out.push(`${s.llmFailures} LLM failure(s)`);
+    lines.push(`${s.llmCalls} LLM call(s): ${out.join(" · ")}`);
+    if (s.keptRatios.length > 0)
+        lines.push(`kept ${s.keptRatios.map(([k, t]) => `${k}/${t}`).join(", ")}`);
+    if (s.proposed + s.updated + s.additionsFlagged > 0)
+        lines.push("review them with: vir review --insights");
+    return lines;
+}
+export async function cmdConnect(opts) {
+    const cfg = loadConfig();
+    const db = new StateDb();
+    try {
+        const client = maybeAnthropicClient(cfg);
+        const model = normalizeModelName(resolveModelShorthand(cfg.models.distill), cfg.provider);
+        const deps = {
+            provider: await resolveActiveProviderCached(cfg.embeddingProvider),
+            llm: (prompt) => withRateLimitRetry(() => callLLM(cfg, client, { prompt, model, maxTokens: VERIFY_MAX_TOKENS, cost: { stage: "connect" } })),
+            model,
+            estimateCostUsd: (inTok, outTok) => cfg.provider === "claude-cli"
+                ? 0
+                : resolvePricing(cfg.provider, model, cfg.pricing, cfg.kieTopUpTier) === null
+                    ? null
+                    : computeCost(cfg.provider, model, inTok, outTok, cfg.pricing, cfg.kieTopUpTier),
+            now: () => new Date(),
+        };
+        ui.header(`connect${opts.dryRun ? "  --dry-run" : ""}`);
+        ui.blank();
+        if (opts.reconsider !== undefined) {
+            if (opts.dryRun) {
+                const row = db.getInsightBySlug(opts.reconsider);
+                ui.line(ui.text(row === null
+                    ? `  no rule with slug ${opts.reconsider}`
+                    : `  would reset ${opts.reconsider} (${row.status}, ${row.promotion}) to proposed — nothing written`));
+                return;
+            }
+            await runConnect(cfg, db, { dryRun: false, reconsider: opts.reconsider }, deps);
+            ui.row(ui.success(ui.CHECK), ui.text(`${opts.reconsider} is proposed again — vir review --insights`));
+            return;
+        }
+        const preview = await runConnect(cfg, db, { dryRun: true }, deps);
+        const quota = cfg.provider === "claude-cli";
+        for (const l of formatConnectSummary(preview, true, { quota }))
+            ui.line(ui.text(`  ${l}`));
+        if (opts.dryRun || preview.candidates === 0)
+            return;
+        if (opts.yes !== true) {
+            if (process.stdin.isTTY !== true) {
+                throw new Error("vir connect makes paid LLM calls — pass --yes to run it non-interactively");
+            }
+            const proceed = await confirm({ message: "Run the LLM calls now?", default: false });
+            if (!proceed) {
+                ui.line(ui.dim("  aborted"));
+                return;
+            }
+        }
+        ui.blank();
+        const result = await runConnect(cfg, db, { dryRun: false }, deps);
+        for (const l of formatConnectSummary(result, false, { quota }))
+            ui.line(ui.text(`  ${l}`));
+    }
+    finally {
+        db.close();
+    }
+}
+//# sourceMappingURL=connect.js.map

package/dist/cli/connect.js.map

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package/dist/cli/init.js

@@ -7,11 +7,12 @@ import { homedir } from "node:os";
 import { join } from "node:path";
 import { CONFIG_PATH, maskSecret, ConfigSchema, configExists, ensureVirDir, expandHome, loadConfig, saveConfig, } from "../config.js";
 import { setupNotifications } from "./notificationsSetup.js";
-import { categorizeTranscriptHead, classifyTranscript, estimateSessionCost, groupByProject, readTranscriptHead, } from "../pipeline/projects.js";
+import { categorizeTranscriptHead, estimateSessionCost, readTranscriptHead, } from "../pipeline/projects.js";
+import { buildSources, groupSessions, resolveSource, scanAll, } from "../sources/registry.js";
 import { promptProjectDecisions } from "./projectSelect.js";
-import { scanSessions } from "../pipeline/scanner.js";
 import { normalizeModelName } from "../pipeline/distiller.js";
 import { buildInitConfig } from "./initConfig.js";
+import { defaultNotesDir } from "./notesDir.js";
 import { installToClaudeCode } from "../mcp/install.js";
 import * as ui from "../ui/display.js";
 export async function cmdInit() {
@@ -23,15 +24,14 @@ export async function cmdInit() {
     let vaultPath = "";
     for (;;) {
         vaultPath = await input({
-            message: "Obsidian vault path",
-            default: existing?.vaultPath ??
-                join(homedir(), "Documents", "Obsidian", "MyVault"),
+            message: "Notes folder (any folder of markdown — an Obsidian vault works too)",
+            default: existing?.vaultPath ?? defaultNotesDir(homedir(), existsSync),
         });
         const expanded = expandHome(vaultPath);
         if (existsSync(expanded))
             break;
         const create = await confirm({
-            message: `Vault path does not exist (${expanded}). Create it?`,
+            message: `Folder does not exist (${expanded}). Create it?`,
             default: true,
         });
         if (create) {
@@ -45,7 +45,7 @@ export async function cmdInit() {
         }
     }
     const outputDir = await input({
-        message: "Output subdir inside vault",
+        message: "Output subfolder inside the notes folder",
         default: existing?.outputDir ?? "vir",
     });
     // ── claude projects dir ─────────────────────────────────────────────────
@@ -69,15 +69,14 @@ export async function cmdInit() {
     // ── web articles (optional second input source) ─────────────────────────
     let articlesDir = existing?.articlesDir;
     const wantsArticles = await confirm({
-        message: "Do you save web articles to a folder (e.g. Obsidian Web Clipper)?",
+        message: "Do you save web articles as markdown to a folder (e.g. a web clipper)?",
         default: existing?.articlesDir !== undefined,
     });
     if (wantsArticles) {
         for (;;) {
             articlesDir = await input({
                 message: "Articles (raw/) directory",
-                default: existing?.articlesDir ??
-                    join(homedir(), "Documents", "Obsidian", "raw"),
+                default: existing?.articlesDir ?? join(expandHome(vaultPath), "raw"),
             });
             const expanded = expandHome(articlesDir);
             if (existsSync(expanded))
@@ -255,12 +254,13 @@ export async function cmdInit() {
     let agentTranscriptsAnswer;
     try {
         const projectsDirX = expandHome(claudeProjectsDir);
-        const allFound = scanSessions(projectsDirX);
+        const sources = buildSources({ claudeProjectsDir: projectsDirX });
+        const allFound = scanAll(sources);
         // Triage counts + the agent-transcript question. Only top-level
         // transcripts count (nested workflow/sidechain have their own filter),
         // and agent transcripts are excluded from the per-project multi-select
         // numbers so the costs shown reflect what would actually distill.
-        const topLevel = allFound.filter((s) => classifyTranscript(s.path, projectsDirX) === "session");
+        const topLevel = allFound.filter((s) => resolveSource(sources, s.path).category(s.path) === "session");
         const counts = { interactive: 0, agent: 0, stub: 0 };
         const agentPaths = new Set();
         for (const s of topLevel) {
@@ -287,7 +287,7 @@ export async function cmdInit() {
         const found = agentTranscriptsAnswer !== "include"
             ? topLevel.filter((s) => !agentPaths.has(s.path))
             : topLevel;
-        const groups = [...groupByProject(found, projectsDirX).values()];
+        const groups = [...groupSessions(found, sources).values()];
         if (groups.length > 0) {
             const classifyId = normalizeModelName(classifyModel, provider);
             const distillId = normalizeModelName(distillModel, provider);