@djolex999/vir-cli 0.24.2 → 0.24.3

package/README.md

@@ -5,7 +5,8 @@
 <h1 align="center">vir</h1>
 
 <p align="center">
-  An LLM Wiki for Claude Code, in your Obsidian vault.
+  Karpathy's LLM Wiki, built automatically from your Claude Code sessions.<br>
+  Plain markdown you own: best in Obsidian, fine without it.
 </p>
 
 <p align="center">
@@ -22,7 +23,7 @@ developer-tools, mcp, local-first, cross-platform, llm-wiki
   <a href="https://www.npmjs.com/package/@djolex999/vir-cli"><img src="https://img.shields.io/npm/v/@djolex999/vir-cli?color=7c6af7&label=npm" alt="npm version"></a>
   <a href="https://www.npmjs.com/package/@djolex999/vir-cli"><img src="https://img.shields.io/npm/dw/@djolex999/vir-cli?color=4fd1a0" alt="npm downloads"></a>
   <a href="LICENSE"><img src="https://img.shields.io/badge/license-MIT-22d3ee" alt="license"></a>
-  <a href="#project-status"><img src="https://img.shields.io/badge/tests-612%20passing-22c55e" alt="tests"></a>
+  <a href="#project-status"><img src="https://img.shields.io/badge/tests-1075%20passing-22c55e" alt="tests"></a>
   <a href="#project-status"><img src="https://img.shields.io/badge/platforms-macOS%20%7C%20Linux-lightgrey" alt="platforms"></a>
   <a href="https://modelcontextprotocol.io"><img src="https://img.shields.io/badge/MCP-server-c084fc" alt="mcp"></a>
   <a href="#"><img src="https://img.shields.io/badge/local--first-yes-f59e0b" alt="local-first"></a>
@@ -56,7 +57,7 @@ vir init
 vir run
 ```
 
-`vir init` is a wizard: provider, models, vault path. `vir run` does one pass
+`vir init` is a wizard: provider, models, notes folder. `vir run` does one pass
 over your sessions and writes notes. When you like the output,
 `vir schedule install` registers a daemon that keeps the vault current.
 
@@ -87,7 +88,7 @@ Claude Code sessions
       ↓
      vir
       ↓
-Obsidian vault
+markdown notes (Obsidian vault optional)
       ↓
   CLAUDE.md
       ↓
@@ -112,12 +113,15 @@ Several open source implementations of this pattern now exist
 [nashsu/llm_wiki](https://github.com/nashsu/llm_wiki) among them). Each takes
 a different shape.
 
-Vir is the Obsidian-native one. It treats Obsidian as the primary frontend,
-not just a storage location: a sidebar plugin
+Vir is the one built from your own coding sessions, and it is Obsidian-native
+when you want it. In Obsidian it is a frontend, not just a storage location: a
+sidebar plugin
 ([vir-obsidian](https://github.com/djolex999/vir-obsidian)),
 dataview-compatible frontmatter, wikilinked notes that show up in the graph.
 It reads AI coding session transcripts retroactively, so months of existing
-history become a queryable knowledge base in one run.
+history become a queryable knowledge base in one run. Without Obsidian it is a
+folder of markdown, and `vir query` and the MCP server work with no editor at
+all.
 
 [Karpathy's post →](https://x.com/karpathy/status/2039805659525644595)
 
@@ -141,13 +145,13 @@ worse results, not better."_ Fair. Vir addresses it in layers:
 - **Opt-in `CLAUDE.md` sync.** Nothing vir generates touches your prompt
   context automatically. `vir sync-claude` shows a diff and waits for your
   confirmation. You decide what reaches Claude.
-- **Plain markdown output.** Every note is a file in your Obsidian vault. Read
+- **Plain markdown output.** Every note is a file in your notes folder. Read
   it, edit it, delete it. Nothing is hidden in a database you can't inspect.
 - **Lint and dedupe.** `vir lint` flags contradictions and stale notes;
   `vir dedupe` merges near-duplicate notes that have drifted apart.
 - **Active learning** via `vir review`. Walk through new distillations and
-  approve, edit, or reject each one. Verified notes rank first in retrieval
-  (in `vir query` and the MCP server). Rejected notes move to `.rejected/`,
+  approve, edit, or reject each one. Verified notes get a ranking boost in
+  retrieval (in `vir query` and the MCP server). Rejected notes move to `.rejected/`,
   recoverable, not deleted.
 - **MMR-diverse retrieval.** Queries return notes covering different aspects
   of the topic, not 5 similar duplicates.
@@ -206,8 +210,8 @@ Different tools for different needs:
   capture and vector storage, use claude-mem.
 - **If you're building AI applications that need to remember users**
   long-term, use mem0 (different layer entirely).
-- **If you want an Obsidian-native LLM Wiki** that reads your existing Claude
-  Code sessions, use vir.
+- **If you want an LLM Wiki that reads your existing Claude Code sessions**,
+  Obsidian-native or just a folder of markdown, use vir.
 
 ## Numbers from a real run
 
@@ -224,7 +228,8 @@ Output from my first run across 226 Claude Code sessions:
 
 Other LLM Wiki implementations would produce similar results with the same
 input. The distinguishing question for vir is workflow fit: does
-Obsidian-native plus retroactive match how you actually work?
+retroactive distillation of your own sessions, Obsidian-native when you want
+it, match how you actually work?
 
 Example query against the distilled vault:
 
@@ -255,13 +260,28 @@ sources 4 · via embedding · searched 126
 - macOS or Linux (systemd or cron)
 - Node.js 20+
 - Claude Code (sessions at `~/.claude/projects/`)
-- Obsidian vault
+- A folder for notes. An Obsidian vault works great but is optional; see
+  [Without Obsidian](#without-obsidian).
 - A distill provider — any one of:
   - Anthropic API key (predictable per-session cost, no effect on your Claude Code limits)
   - Your Claude Code subscription (`provider: "claude-cli"` — free and keyless; distills consume your Claude Code usage limits)
   - Kie.ai API key (~72% cheaper, third-party proxy — used for testing and calibration runs, not recommended for your real vault)
 - Optional: Ollama + `nomic-embed-text` for semantic search
 
+
+## Without Obsidian
+
+vir writes plain markdown with YAML frontmatter. Obsidian is the nicest way to
+browse it, but nothing depends on it:
+
+- **Any editor works.** Notes are ordinary `.md` files under `<notes folder>/vir/`.
+  `[[wikilinks]]` read fine as text, and VS Code with Foam or Markdown Memo
+  resolves them as links.
+- **No editor needed for retrieval.** `vir query "<question>"` and the MCP server
+  (`vir mcp install`) search the folder directly.
+- **Point `vir init` at any folder.** If no Obsidian vault exists, it suggests
+  `~/notes` and creates it.
+
 ## Cost
 
 Vir runs two API calls per session: a Haiku classify (cheap) and a distill
@@ -408,8 +428,8 @@ Restart Claude Code. The vault is now queryable mid-session via six tools:
 `vir_query`, `vir_status`, `vir_recent_notes`, `vir_recent_articles`,
 `vir_project_summary`, `vir_compose`. `vir_query` takes a `type` filter
 (`session` | `article` | `topic` | `pdf` | `all`). Human-verified notes
-(approved via `vir review`) rank first; pass `verified_only: true` to see
-only those. The server never writes the vault. `vir_query` is the one tool
+(approved via `vir review`) get a +0.2 score boost; pass `verified_only: true`
+to see only those. The server never writes the vault. `vir_query` is the one tool
 that spends tokens: it synthesizes an answer with your provider, and
 `synthesize: false` returns just the matching notes.
 
@@ -456,7 +476,7 @@ Located at `~/.vir/config.json`.
 
 | Field               | Default                     | Description                                                |
 | ------------------- | --------------------------- | ---------------------------------------------------------- |
-| `vaultPath`         | (required)                  | Absolute path to Obsidian vault                            |
+| `vaultPath`         | (required)                  | Absolute path to your notes folder (Obsidian vault optional) |
 | `outputDir`         | `vir`                       | Subdir inside vault                                        |
 | `claudeProjectsDir` | `~/.claude/projects`        | Claude Code sessions                                       |
 | `cadenceHours`      | `3`                         | Daemon run frequency (hours)                               |
@@ -524,8 +544,8 @@ improvements. Delete it any time; disable it with `"logQueries": false` in
 
 |                |                                           |
 | -------------- | ----------------------------------------- |
-| Version        | 0.22.0                                    |
-| Tests          | 887 passing                               |
+| Version        | 0.24.2                                    |
+| Tests          | 1073 passing                              |
 | Platforms      | macOS (launchd), Linux (systemd/cron)     |
 | Node           | 20+                                       |
 | First-run cost | $1 to $5 (Kie.ai optional, ~72% cheaper)  |
@@ -536,7 +556,7 @@ improvements. Delete it any time; disable it with `"logQueries": false` in
 Shipped:
 
 - [x] Linux support (systemd timer + cron fallback), experimental
-- [x] Active learning: `vir review`, verified notes ranked first in retrieval
+- [x] Active learning: `vir review`, verified notes boosted in retrieval
 - [x] Web article ingestion (Obsidian Web Clipper folder → same vault)
 - [x] PDF and paper ingestion
 - [x] Obsidian plugin: [vir-obsidian](https://github.com/djolex999/vir-obsidian), sidebar queries against the vault

package/dist/cli/init.js

@@ -7,11 +7,12 @@ import { homedir } from "node:os";
 import { join } from "node:path";
 import { CONFIG_PATH, maskSecret, ConfigSchema, configExists, ensureVirDir, expandHome, loadConfig, saveConfig, } from "../config.js";
 import { setupNotifications } from "./notificationsSetup.js";
-import { categorizeTranscriptHead, classifyTranscript, estimateSessionCost, groupByProject, readTranscriptHead, } from "../pipeline/projects.js";
+import { categorizeTranscriptHead, estimateSessionCost, readTranscriptHead, } from "../pipeline/projects.js";
+import { buildSources, groupSessions, resolveSource, scanAll, } from "../sources/registry.js";
 import { promptProjectDecisions } from "./projectSelect.js";
-import { scanSessions } from "../pipeline/scanner.js";
 import { normalizeModelName } from "../pipeline/distiller.js";
 import { buildInitConfig } from "./initConfig.js";
+import { defaultNotesDir } from "./notesDir.js";
 import { installToClaudeCode } from "../mcp/install.js";
 import * as ui from "../ui/display.js";
 export async function cmdInit() {
@@ -23,15 +24,14 @@ export async function cmdInit() {
     let vaultPath = "";
     for (;;) {
         vaultPath = await input({
-            message: "Obsidian vault path",
-            default: existing?.vaultPath ??
-                join(homedir(), "Documents", "Obsidian", "MyVault"),
+            message: "Notes folder (any folder of markdown — an Obsidian vault works too)",
+            default: existing?.vaultPath ?? defaultNotesDir(homedir(), existsSync),
         });
         const expanded = expandHome(vaultPath);
         if (existsSync(expanded))
             break;
         const create = await confirm({
-            message: `Vault path does not exist (${expanded}). Create it?`,
+            message: `Folder does not exist (${expanded}). Create it?`,
             default: true,
         });
         if (create) {
@@ -45,7 +45,7 @@ export async function cmdInit() {
         }
     }
     const outputDir = await input({
-        message: "Output subdir inside vault",
+        message: "Output subfolder inside the notes folder",
         default: existing?.outputDir ?? "vir",
     });
     // ── claude projects dir ─────────────────────────────────────────────────
@@ -69,15 +69,14 @@ export async function cmdInit() {
     // ── web articles (optional second input source) ─────────────────────────
     let articlesDir = existing?.articlesDir;
     const wantsArticles = await confirm({
-        message: "Do you save web articles to a folder (e.g. Obsidian Web Clipper)?",
+        message: "Do you save web articles as markdown to a folder (e.g. a web clipper)?",
         default: existing?.articlesDir !== undefined,
     });
     if (wantsArticles) {
         for (;;) {
             articlesDir = await input({
                 message: "Articles (raw/) directory",
-                default: existing?.articlesDir ??
-                    join(homedir(), "Documents", "Obsidian", "raw"),
+                default: existing?.articlesDir ?? join(expandHome(vaultPath), "raw"),
             });
             const expanded = expandHome(articlesDir);
             if (existsSync(expanded))
@@ -255,12 +254,13 @@ export async function cmdInit() {
     let agentTranscriptsAnswer;
     try {
         const projectsDirX = expandHome(claudeProjectsDir);
-        const allFound = scanSessions(projectsDirX);
+        const sources = buildSources({ claudeProjectsDir: projectsDirX });
+        const allFound = scanAll(sources);
         // Triage counts + the agent-transcript question. Only top-level
         // transcripts count (nested workflow/sidechain have their own filter),
         // and agent transcripts are excluded from the per-project multi-select
         // numbers so the costs shown reflect what would actually distill.
-        const topLevel = allFound.filter((s) => classifyTranscript(s.path, projectsDirX) === "session");
+        const topLevel = allFound.filter((s) => resolveSource(sources, s.path).category(s.path) === "session");
         const counts = { interactive: 0, agent: 0, stub: 0 };
         const agentPaths = new Set();
         for (const s of topLevel) {
@@ -287,7 +287,7 @@ export async function cmdInit() {
         const found = agentTranscriptsAnswer !== "include"
             ? topLevel.filter((s) => !agentPaths.has(s.path))
             : topLevel;
-        const groups = [...groupByProject(found, projectsDirX).values()];
+        const groups = [...groupSessions(found, sources).values()];
         if (groups.length > 0) {
             const classifyId = normalizeModelName(classifyModel, provider);
             const distillId = normalizeModelName(distillModel, provider);

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package/dist/cli/notesDir.js

@@ -0,0 +1,9 @@
+import { join } from "node:path";
+// vir writes plain markdown; an Obsidian vault is one valid home for it, not a
+// requirement. Prefer the conventional vault when it exists, else ~/notes
+// (notes then land in ~/notes/vir/ via the default outputDir).
+export function defaultNotesDir(home, exists) {
+    const vault = join(home, "Documents", "Obsidian", "MyVault");
+    return exists(vault) ? vault : join(home, "notes");
+}
+//# sourceMappingURL=notesDir.js.map

package/dist/cli/notesDir.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"notesDir.js","sourceRoot":"","sources":["../../src/cli/notesDir.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,+EAA+E;AAC/E,0EAA0E;AAC1E,+DAA+D;AAC/D,MAAM,UAAU,eAAe,CAC7B,IAAY,EACZ,MAA8B;IAE9B,MAAM,KAAK,GAAG,IAAI,CAAC,IAAI,EAAE,WAAW,EAAE,UAAU,EAAE,SAAS,CAAC,CAAC;IAC7D,OAAO,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;AACrD,CAAC"}

package/dist/cli/projects.js

@@ -1,6 +1,6 @@
-import { classifyTranscript, estimateSessionCost, groupByProject, readTranscriptHead, sniffAgentEntrypoint, } from "../pipeline/projects.js";
+import { estimateSessionCost, } from "../pipeline/projects.js";
 import { normalizeModelName } from "../pipeline/distiller.js";
-import { scanSessions } from "../pipeline/scanner.js";
+import { buildSources, groupSessions, resolveSource, scanAll } from "../sources/registry.js";
 import { StateDb } from "../state/db.js";
 // Aggregate the scan (every project seen on disk) against DB state into the
 // `vir projects` table. Pure — the command wires in scan/DB/config and an
@@ -56,7 +56,8 @@ export function buildProjectsReport(groups, meta, decisions, estCost, nested) {
 // dir, read DB status, apply config decisions. Opens its own StateDb unless
 // one is passed in.
 export function gatherProjectsReport(cfg) {
-    const found = scanSessions(cfg.claudeProjectsDir);
+    const sources = buildSources(cfg);
+    const found = scanAll(sources);
     // Partition out nested agent-internal transcripts (unless the knob says
     // include) so they annotate the table instead of counting as sessions.
     let inScope = found;
@@ -66,7 +67,7 @@ export function gatherProjectsReport(cfg) {
     if (cfg.workflowTranscripts !== "include") {
         inScope = [];
         for (const s of found) {
-            const cat = classifyTranscript(s.path, cfg.claudeProjectsDir);
+            const cat = resolveSource(sources, s.path).category(s.path);
             if (cat === "session")
                 inScope.push(s);
             else {
@@ -79,7 +80,7 @@ export function gatherProjectsReport(cfg) {
     if (cfg.agentTranscripts !== "include") {
         const stillHuman = [];
         for (const s of inScope) {
-            if (sniffAgentEntrypoint(readTranscriptHead(s.path)) !== null) {
+            if (resolveSource(sources, s.path).agentEntrypoint(s.path) !== null) {
                 filteredOut.push(s);
                 catByPath.set(s.path, "agent");
             }
@@ -89,14 +90,14 @@ export function gatherProjectsReport(cfg) {
         }
         inScope = stillHuman;
     }
-    for (const g of groupByProject(filteredOut, cfg.claudeProjectsDir).values()) {
+    for (const g of groupSessions(filteredOut, sources).values()) {
         const counts = { workflow: 0, sidechain: 0, agent: 0 };
         for (const s of g.sessions) {
             counts[catByPath.get(s.path) ?? "sidechain"] += 1;
         }
         nested.set(g.name, counts);
     }
-    const groups = [...groupByProject(inScope, cfg.claudeProjectsDir).values()];
+    const groups = [...groupSessions(inScope, sources).values()];
     // A project whose transcripts are ALL nested would vanish from the table —
     // keep it visible with an empty session group.
     for (const name of nested.keys()) {

package/dist/cli/projects.js.map

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package/dist/cli/reconcile.js

@@ -7,8 +7,8 @@ import { computeCost } from "../cost/pricing.js";
 import { Distiller, normalizeModelName, resolveModelShorthand } from "../pipeline/distiller.js";
 import { ClaudeCliLimitError } from "../pipeline/claudeCli.js";
 import { acquireLock, LockHeldError, releaseLock } from "../pipeline/lock.js";
-import { parseSession } from "../pipeline/parser.js";
-import { classifyTranscript, decideProject, projectNameFor, readTranscriptHead, sniffAgentEntrypoint, } from "../pipeline/projects.js";
+import { decideProject } from "../pipeline/projects.js";
+import { buildSources, resolveSource } from "../sources/registry.js";
 import { scrub } from "../pipeline/scrubber.js";
 import { filterToolCalls } from "../pipeline/toolCallFilter.js";
 import { VaultWriter } from "../pipeline/writer.js";
@@ -42,9 +42,10 @@ export function selectReconcileTargets(rows, force = false) {
 // transcript category, SDK-agent entrypoint, project decision. A row that
 // errored before these existed (or before a project was excluded) must not be
 // retried past them. Returns the skip reason, or null when the row may retry.
-export function reconcileGate(t, cfg, readHead = readTranscriptHead) {
+export function reconcileGate(t, cfg) {
+    const source = resolveSource(buildSources(cfg), t.path);
     if (cfg.workflowTranscripts !== "include") {
-        const cat = classifyTranscript(t.path, cfg.claudeProjectsDir);
+        const cat = source.category(t.path);
         if (cat !== "session") {
             return {
                 reason: cat === "workflow" ? "workflow-transcript" : "sidechain-transcript",
@@ -52,11 +53,11 @@ export function reconcileGate(t, cfg, readHead = readTranscriptHead) {
         }
     }
     if (cfg.agentTranscripts !== "include") {
-        const entrypoint = sniffAgentEntrypoint(readHead(t.path));
+        const entrypoint = source.agentEntrypoint(t.path);
         if (entrypoint !== null)
             return { reason: "agent-transcript", entrypoint };
     }
-    const decision = decideProject(projectNameFor(t.path, cfg.claudeProjectsDir), cfg.projects ?? {});
+    const decision = decideProject(source.projectName(t.path), cfg.projects ?? {});
     if (decision === "exclude")
         return { reason: "project-excluded" };
     if (decision === "pending")
@@ -96,7 +97,7 @@ export function summarizeReconcileTargets(cfg, targets, costSessionIds, forceDis
         // Subscription path: retries cost quota, not dollars — estimate stays 0.
         if (cfg.provider !== "claude-cli" && !missing) {
             try {
-                const parsed = parseSession(t.path, t.hash);
+                const parsed = resolveSource(buildSources(cfg), t.path).parse(t.path, t.hash);
                 const classifyIn = Math.ceil(scrub(parsed.rawSummary).length / CHARS_PER_TOKEN);
                 const distillIn = Math.ceil(scrub(filterToolCalls(parsed.transcriptText, cfg.filterToolCalls).filtered).length / CHARS_PER_TOKEN);
                 estimatedCost =
@@ -261,7 +262,8 @@ export async function runReconcile(cfg, opts = {}) {
             // are cached but we know their stored content is empty, so we want a
             // forced retry. Parse, score, distill, then update the row in place.
             try {
-                const parsed = parseSession(t.path, t.hash, projectNameFor(t.path, cfg.claudeProjectsDir));
+                const source = resolveSource(buildSources(cfg), t.path);
+                const parsed = source.parse(t.path, t.hash, source.projectName(t.path));
                 const outcome = await distillOneSession(parsed, t, {
                     cfg,
                     db,

package/dist/cli/reconcile.js.map

@@ -1 +1 @@
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package/dist/cli.js

@@ -12,11 +12,9 @@ import { applyPlan, planUpdates } from "./claude/updater.js";
 import { pruneCommand } from "./cli/pruneAction.js";
 import { setupNotifications } from "./cli/notificationsSetup.js";
 import { runPipeline } from "./pipeline/run.js";
-import { projectNameFor } from "./pipeline/projects.js";
 import { persistProjectDecisions, promptProjectDecisions, } from "./cli/projectSelect.js";
 import { gatherProjectsReport } from "./cli/projects.js";
-import { scanSessions } from "./pipeline/scanner.js";
-import { parseSession } from "./pipeline/parser.js";
+import { buildSources, resolveSource, scanAll } from "./sources/registry.js";
 import { scoreSession } from "./pipeline/filter.js";
 import { scrub } from "./pipeline/scrubber.js";
 import { filterToolCalls } from "./pipeline/toolCallFilter.js";
@@ -55,7 +53,7 @@ const pkg = JSON.parse(readFileSync(join(dirname(fileURLToPath(import.meta.url))
 const program = new Command();
 program
     .name("vir")
-    .description("Distill Claude Code sessions into an Obsidian vault")
+    .description("Distill your Claude Code sessions into a markdown knowledge base you own")
     .version(pkg.version);
 program
     .command("init")
@@ -291,15 +289,17 @@ program
         process.exitCode = 1;
         return;
     }
-    const found = scanSessions(cfg.claudeProjectsDir).find((s) => basename(s.path, ".jsonl") === sessionId);
+    const sources = buildSources(cfg);
+    const found = scanAll(sources).find((s) => basename(s.path, ".jsonl") === sessionId);
     if (!found) {
-        console.error(chalk.red(`session not found under ${cfg.claudeProjectsDir}: ${sessionId}`));
+        console.error(chalk.red(`session not found under ${sources.map((s) => s.root).join(", ")}: ${sessionId}`));
         process.exitCode = 1;
         return;
     }
     // Same pipeline as production up to (but NOT including) writer.write / db.record.
     // classify always runs on Haiku (matches production); only distill varies.
-    const parsed = parseSession(found.path, found.hash, projectNameFor(found.path, cfg.claudeProjectsDir));
+    const source = resolveSource(sources, found.path);
+    const parsed = source.parse(found.path, found.hash, source.projectName(found.path));
     const score = scoreSession(parsed, cfg.filterThreshold);
     const scrubbedSummary = scrub(parsed.rawSummary);
     const scrubbedContent = scrub(filterToolCalls(parsed.transcriptText, cfg.filterToolCalls).filtered);