@djmima/pubmed-mcp 1.0.1 → 1.1.0

package/dist/pubmed/client.js

@@ -23,6 +23,18 @@ const HTTPS_AGENT = new https.Agent({
     ALPNProtocols: ['http/1.1'],
     keepAlive: true,
 });
+/**
+ * Abort a request when NCBI sends no response headers, or the connection
+ * goes idle, for this long. Without it a stalled connection hangs the tool
+ * call (and in HTTP mode, the client's request) indefinitely.
+ */
+const REQUEST_TIMEOUT_MS = 60_000;
+/** Options shared by every NCBI request. */
+const REQUEST_OPTIONS = {
+    httpsAgent: HTTPS_AGENT,
+    timeout: REQUEST_TIMEOUT_MS,
+    beforeRedirect: refuseRedirectOffNcbi,
+};
 const TOOL_NAME = 'pubmed-mcp';
 /**
  * NCBI requires `email` to be the software developer's address, not an end
@@ -120,7 +132,7 @@ export class NcbiClient {
                     await sleep(retryDelayMs(err, attempt));
                     continue;
                 }
-                throw wrapAxiosError(err, operation);
+                throw wrapAxiosError(err, operation, this.apiKey);
             }
         }
     }
@@ -130,7 +142,7 @@ export class NcbiClient {
      */
     async esearch(params) {
         const response = await this.request('esearch', () => axios.get(`${NCBI_BASE_URL}esearch.fcgi`, {
-            httpsAgent: HTTPS_AGENT,
+            ...REQUEST_OPTIONS,
             params: {
                 ...this.commonParams(),
                 db: 'pubmed',
@@ -154,7 +166,7 @@ export class NcbiClient {
     async efetch(params) {
         const idStr = Array.isArray(params.id) ? params.id.join(',') : params.id;
         const response = await this.request('efetch', () => axios.get(`${NCBI_BASE_URL}efetch.fcgi`, {
-            httpsAgent: HTTPS_AGENT,
+            ...REQUEST_OPTIONS,
             params: {
                 ...this.commonParams(),
                 db: params.db,
@@ -183,7 +195,7 @@ export class NcbiClient {
             searchParams.append('id', id);
         }
         const response = await this.request('elink', () => axios.get(`${NCBI_BASE_URL}elink.fcgi?${searchParams.toString()}`, {
-            httpsAgent: HTTPS_AGENT,
+            ...REQUEST_OPTIONS,
         }));
         return response.data;
     }
@@ -193,10 +205,12 @@ export class NcbiClient {
      */
     async ecitmatch(citations) {
         const bdata = citations
-            .map((c) => `${c.journal}|${c.year}|${c.volume}|${c.first_page}|${c.author}|${c.key}|`)
+            .map((c) => [c.journal, c.year, c.volume, c.first_page, c.author, c.key]
+            .map(bdataField)
+            .join('|') + '|')
             .join('\r');
         const response = await this.request('ecitmatch', () => axios.get(`${NCBI_BASE_URL}ecitmatch.cgi`, {
-            httpsAgent: HTTPS_AGENT,
+            ...REQUEST_OPTIONS,
             params: {
                 ...this.commonParams(),
                 db: 'pubmed',
@@ -219,7 +233,7 @@ export class NcbiClient {
      */
     async idConvert(params) {
         const response = await this.request('idConvert', () => axios.get(PMC_ID_CONVERTER_URL, {
-            httpsAgent: HTTPS_AGENT,
+            ...REQUEST_OPTIONS,
             params: {
                 ...this.commonParams(),
                 format: 'json',
@@ -228,11 +242,11 @@ export class NcbiClient {
                 versions: 'no',
             },
         }));
-        return sanitizeIdConvResponse(response.data);
+        return sanitizeIdConvResponse(response.data, this.apiKey);
     }
 }
 // ─── Helpers ─────────────────────────────────────────────────────────────────
-function wrapAxiosError(err, operation) {
+function wrapAxiosError(err, operation, apiKey) {
     if (err instanceof NcbiApiError || err instanceof NcbiNetworkError) {
         return err;
     }
@@ -240,10 +254,11 @@ function wrapAxiosError(err, operation) {
         const status = err.response?.status;
         if (status !== undefined) {
             const body = describeResponseBody(err.response?.data);
-            const message = redactApiKey(body || err.message);
+            const message = redactApiKey(body || err.message, apiKey);
             return new NcbiApiError(`NCBI ${operation} returned HTTP ${status}: ${message}`, status);
         }
-        return new NcbiNetworkError(`Network error during NCBI ${operation}: ${err.message}`, err);
+        // The AxiosError is not kept as the cause: its config holds the API key.
+        return new NcbiNetworkError(`Network error during NCBI ${operation}: ${redactApiKey(err.message, apiKey)}`);
     }
     if (err instanceof Error)
         return err;
@@ -289,15 +304,32 @@ function retryDelayMs(err, attempt) {
     }
     return fallback;
 }
+/**
+ * Refuse a redirect that leaves NCBI or drops HTTPS. The API key travels in
+ * the query string, which redirects keep (the ID Converter redirects to
+ * pmc.ncbi.nlm.nih.gov with the query intact). Checks href rather than
+ * hostname, which axios rewrites to the proxy's when a proxy is configured.
+ */
+function refuseRedirectOffNcbi(options) {
+    const target = new URL(String(options.href));
+    const onNcbi = target.hostname === 'ncbi.nlm.nih.gov' || target.hostname.endsWith('.ncbi.nlm.nih.gov');
+    if (target.protocol !== 'https:' || !onNcbi) {
+        throw new Error(`refused redirect to ${target.protocol}//${target.host}`);
+    }
+}
+/** "|" separates ECitMatch fields and "\r" separates citations, so neither may appear in a field. */
+function bdataField(value) {
+    return String(value).replace(/[|\r\n]+/g, ' ');
+}
 function looksLikeHtml(text) {
     return /^\s*(?:<!doctype\s+html|<html\b)/i.test(text);
 }
-function sanitizeIdConvResponse(response) {
+function sanitizeIdConvResponse(response, apiKey) {
     return {
         ...response,
         request: {
             ...response.request,
-            echo: redactApiKey(response.request.echo),
+            echo: redactApiKey(response.request.echo, apiKey),
         },
         records: response.records.map((record) => ({
             ...record,
@@ -310,10 +342,12 @@ function sanitizeIdConvResponse(response) {
         })),
     };
 }
-function redactApiKey(value) {
+function redactApiKey(value, apiKey) {
     // NCBI echoes the key both as a query param and as "api-key" in JSON error bodies.
-    return value
+    const redacted = value
         .replace(/(^|[?&])(api_key=)[^&\s]+/gi, '$1$2<redacted>')
         .replace(/("api[-_]key"\s*:\s*")[^"]*/gi, '$1<redacted>');
+    // Any other echo of the key, such as one in an HTML-escaped URL.
+    return apiKey ? redacted.split(apiKey).join('<redacted>') : redacted;
 }
 //# sourceMappingURL=client.js.map

package/dist/pubmed/client.js.map

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package/dist/pubmed/types.d.ts

@@ -1,6 +1,7 @@
 /**
  * TypeScript types for PubMed MCP tool responses.
- * These match the exact API surface of the official Anthropic PubMed connector.
+ * Tool names follow the Anthropic PubMed connector, but these shapes are this
+ * server's own and are not kept in sync with that connector.
  */
 export interface SearchArticlesWarnings {
     phrases_ignored: string[];

package/dist/pubmed/types.d.ts.map

@@ -1 +1 @@
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package/dist/pubmed/types.js

@@ -1,6 +1,7 @@
 /**
  * TypeScript types for PubMed MCP tool responses.
- * These match the exact API surface of the official Anthropic PubMed connector.
+ * Tool names follow the Anthropic PubMed connector, but these shapes are this
+ * server's own and are not kept in sync with that connector.
  */
 // ─── Shared constants ────────────────────────────────────────────────────────
 export const IMPORTANT_LEGAL_NOTICE = 'PubMed data is provided by the National Library of Medicine (NLM). ' +

package/dist/pubmed/types.js.map

@@ -1 +1 @@
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+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/pubmed/types.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAiMH,gFAAgF;AAEhF,MAAM,CAAC,MAAM,sBAAsB,GACjC,qEAAqE;IACrE,2FAA2F;IAC3F,iEAAiE;IACjE,6FAA6F;IAC7F,wDAAwD,CAAC"}

package/dist/tools/convertArticleIds.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"convertArticleIds.d.ts","sourceRoot":"","sources":["../../src/tools/convertArticleIds.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAC;AACtD,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,oBAAoB,CAAC;AAGpE,8EAA8E;AAC9E,eAAO,MAAM,eAAe,MAAM,CAAC;AAEnC,eAAO,MAAM,uBAAuB;;;;;;;CAqBnC,CAAC;AAEF,MAAM,MAAM,uBAAuB,GAAG;IACpC,GAAG,EAAE,MAAM,EAAE,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,GAAG,KAAK,CAAC;CACpC,CAAC;AAEF,wBAAsB,iBAAiB,CACrC,MAAM,EAAE,uBAAuB,EAC/B,MAAM,EAAE,UAAU,GACjB,OAAO,CAAC,yBAAyB,CAAC,CAcpC"}

package/dist/tools/convertArticleIds.js

@@ -5,11 +5,12 @@
  * Uses the NCBI PMC ID Converter API.
  */
 import { z } from 'zod';
+import { articleIdSchema } from '../utils/ids.js';
 /** IDs per request; the CLI splits longer lists into batches of this size. */
 export const MAX_CONVERT_IDS = 200;
 export const convertArticleIdsSchema = {
     ids: z
-        .array(z.string().min(1))
+        .array(articleIdSchema)
         .min(1)
         .max(MAX_CONVERT_IDS)
         .describe('Array of article IDs to convert. ' +

package/dist/tools/convertArticleIds.js.map

@@ -1 +1 @@
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+{"version":3,"file":"convertArticleIds.js","sourceRoot":"","sources":["../../src/tools/convertArticleIds.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,OAAO,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAC;AAElD,8EAA8E;AAC9E,MAAM,CAAC,MAAM,eAAe,GAAG,GAAG,CAAC;AAEnC,MAAM,CAAC,MAAM,uBAAuB,GAAG;IACrC,GAAG,EAAE,CAAC;SACH,KAAK,CAAC,eAAe,CAAC;SACtB,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,eAAe,CAAC;SACpB,QAAQ,CACP,mCAAmC;QACjC,2EAA2E;QAC3E,wDAAwD;QACxD,qEAAqE,CACxE;IACH,OAAO,EAAE,CAAC;SACP,IAAI,CAAC,CAAC,MAAM,EAAE,OAAO,EAAE,KAAK,CAAC,CAAC;SAC9B,OAAO,CAAC,MAAM,CAAC;SACf,QAAQ,EAAE;SACV,QAAQ,CACP,0BAA0B;QACxB,kCAAkC;QAClC,+DAA+D;QAC/D,sCAAsC,CACzC;CACJ,CAAC;AAOF,MAAM,CAAC,KAAK,UAAU,iBAAiB,CACrC,MAA+B,EAC/B,MAAkB;IAElB,MAAM,MAAM,GAAG,MAAM,CAAC,OAAO,IAAI,MAAM,CAAC;IAExC,oDAAoD;IACpD,+DAA+D;IAC/D,MAAM,GAAG,GACP,MAAM,KAAK,OAAO;QAChB,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,EAAE,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;QAChF,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC;IAEjB,MAAM,QAAQ,GAAG,MAAM,MAAM,CAAC,SAAS,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;IAEjE,uEAAuE;IACvE,OAAO,QAAqC,CAAC;AAC/C,CAAC"}

package/dist/tools/findRelatedArticles.d.ts

@@ -7,6 +7,11 @@
 import { z } from 'zod';
 import type { NcbiClient } from '../pubmed/client.js';
 import type { FindRelatedArticlesResponse } from '../pubmed/types.js';
+/**
+ * PMIDs per request, kept short because ELink takes them in the URL.
+ * The CLI splits longer lists into batches of this size.
+ */
+export declare const MAX_RELATED_PMIDS = 200;
 declare const LINK_TYPES: readonly ["similar_articles", "citing_pmc_articles", "linked_gene_records", "linked_refseq_proteins", "linked_refseq_nucleotides"];
 export type FindRelatedLinkType = (typeof LINK_TYPES)[number];
 export declare const findRelatedArticlesSchema: {

package/dist/tools/findRelatedArticles.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"findRelatedArticles.d.ts","sourceRoot":"","sources":["../../src/tools/findRelatedArticles.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,KAAK,EAAE,UAAU,EAAkB,MAAM,qBAAqB,CAAC;AACtE,OAAO,KAAK,EAAE,2BAA2B,EAAW,MAAM,oBAAoB,CAAC;AAE/E,QAAA,MAAM,UAAU,oIAMN,CAAC;AACX,MAAM,MAAM,mBAAmB,GAAG,CAAC,OAAO,UAAU,CAAC,CAAC,MAAM,CAAC,CAAC;AAE9D,eAAO,MAAM,yBAAyB;;;;;;;;;;CA0BrC,CAAC;AAEF,MAAM,MAAM,yBAAyB,GAAG;IACtC,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,SAAS,CAAC,EAAE,mBAAmB,CAAC;IAChC,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB,CAAC;AAWF,wBAAsB,mBAAmB,CACvC,MAAM,EAAE,yBAAyB,EACjC,MAAM,EAAE,UAAU,GACjB,OAAO,CAAC,2BAA2B,CAAC,CAiCtC"}
+{"version":3,"file":"findRelatedArticles.d.ts","sourceRoot":"","sources":["../../src/tools/findRelatedArticles.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,KAAK,EAAE,UAAU,EAAkB,MAAM,qBAAqB,CAAC;AACtE,OAAO,KAAK,EAAE,2BAA2B,EAAW,MAAM,oBAAoB,CAAC;AAG/E;;;GAGG;AACH,eAAO,MAAM,iBAAiB,MAAM,CAAC;AAErC,QAAA,MAAM,UAAU,oIAMN,CAAC;AACX,MAAM,MAAM,mBAAmB,GAAG,CAAC,OAAO,UAAU,CAAC,CAAC,MAAM,CAAC,CAAC;AAE9D,eAAO,MAAM,yBAAyB;;;;;;;;;;CA8BrC,CAAC;AAEF,MAAM,MAAM,yBAAyB,GAAG;IACtC,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,SAAS,CAAC,EAAE,mBAAmB,CAAC;IAChC,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB,CAAC;AAWF,wBAAsB,mBAAmB,CACvC,MAAM,EAAE,yBAAyB,EACjC,MAAM,EAAE,UAAU,GACjB,OAAO,CAAC,2BAA2B,CAAC,CAiCtC"}

package/dist/tools/findRelatedArticles.js

@@ -5,6 +5,12 @@
  * service. Supports cross-database links (PubMed→PubMed, PubMed→PMC, etc.).
  */
 import { z } from 'zod';
+import { pmidSchema } from '../utils/ids.js';
+/**
+ * PMIDs per request, kept short because ELink takes them in the URL.
+ * The CLI splits longer lists into batches of this size.
+ */
+export const MAX_RELATED_PMIDS = 200;
 const LINK_TYPES = [
     'similar_articles',
     'citing_pmc_articles',
@@ -14,9 +20,11 @@ const LINK_TYPES = [
 ];
 export const findRelatedArticlesSchema = {
     pmids: z
-        .array(z.string().min(1))
+        .array(pmidSchema)
         .min(1)
-        .describe('Array of source PubMed IDs to find related articles for.'),
+        .max(MAX_RELATED_PMIDS)
+        .describe('Array of source PubMed IDs to find related articles for. ' +
+        `Maximum ${MAX_RELATED_PMIDS} PMIDs per request.`),
     link_type: z
         .enum(LINK_TYPES)
         .default('similar_articles')

package/dist/tools/findRelatedArticles.js.map

@@ -1 +1 @@
-{"version":3,"file":"findRelatedArticles.js","sourceRoot":"","sources":["../../src/tools/findRelatedArticles.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAIxB,MAAM,UAAU,GAAG;IACjB,kBAAkB;IAClB,qBAAqB;IACrB,qBAAqB;IACrB,wBAAwB;IACxB,2BAA2B;CACnB,CAAC;AAGX,MAAM,CAAC,MAAM,yBAAyB,GAAG;IACvC,KAAK,EAAE,CAAC;SACL,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;SACxB,GAAG,CAAC,CAAC,CAAC;SACN,QAAQ,CAAC,0DAA0D,CAAC;IACvE,SAAS,EAAE,CAAC;SACT,IAAI,CAAC,UAAU,CAAC;SAChB,OAAO,CAAC,kBAAkB,CAAC;SAC3B,QAAQ,CACP,2BAA2B;QACzB,oFAAoF;QACpF,4EAA4E;QAC5E,2DAA2D;QAC3D,gEAAgE;QAChE,iEAAiE,CACpE;IACH,WAAW,EAAE,CAAC;SACX,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,IAAI,CAAC;SACT,QAAQ,EAAE;SACV,QAAQ,CACP,sEAAsE;QACpE,8EAA8E,CACjF;CACJ,CAAC;AAQF,mEAAmE;AACnE,MAAM,aAAa,GAAwC;IACzD,gBAAgB,EAAE,eAAe;IACjC,mBAAmB,EAAE,iBAAiB;IACtC,mBAAmB,EAAE,aAAa;IAClC,sBAAsB,EAAE,uBAAuB;IAC/C,yBAAyB,EAAE,uBAAuB;CACnD,CAAC;AAEF,MAAM,CAAC,KAAK,UAAU,mBAAmB,CACvC,MAAiC,EACjC,MAAkB;IAElB,MAAM,QAAQ,GAAG,aAAa,CAAC,MAAM,CAAC,SAAS,IAAI,kBAAkB,CAAC,CAAC;IAEvE,MAAM,QAAQ,GAAG,MAAM,MAAM,CAAC,KAAK,CAAC;QAClC,MAAM,EAAE,QAAQ;QAChB,EAAE,EAAE,MAAM,CAAC,KAAK;QAChB,QAAQ;QACR,GAAG,EAAE,UAAU;KAChB,CAAC,CAAC;IAEH,MAAM,UAAU,GAAG,MAAM,CAAC,WAAW,CAAC;IAEtC,MAAM,QAAQ,GAAc,CAAC,QAAQ,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;QACjE,MAAM,EAAE,EAAE,CAAC,MAAM;QACjB,GAAG,EAAE,EAAE,CAAC,GAAG;QACX,UAAU,EAAE,CAAC,EAAE,CAAC,UAAU,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,IAAoB,EAAE,EAAE;YAC7D,0EAA0E;YAC1E,IAAI,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE;gBAClC,IAAI,OAAO,IAAI,KAAK,QAAQ;oBAAE,OAAO,IAAI,CAAC;gBAC1C,OAAO,IAAI,CAAC,EAAE,CAAC;YACjB,CAAC,CAAC,CAAC;YACH,IAAI,UAAU,KAAK,SAAS,EAAE,CAAC;gBAC7B,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC;YACrC,CAAC;YACD,OAAO;gBACL,IAAI,EAAE,IAAI,CAAC,IAAI;gBACf,QAAQ,EAAE,IAAI,CAAC,QAAQ;gBACvB,KAAK;aACN,CAAC;QACJ,CAAC,CAAC;KACH,CAAC,CAAC,CAAC;IAEJ,OAAO,EAAE,QAAQ,EAAE,CAAC;AACtB,CAAC"}
+{"version":3,"file":"findRelatedArticles.js","sourceRoot":"","sources":["../../src/tools/findRelatedArticles.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAE7C;;;GAGG;AACH,MAAM,CAAC,MAAM,iBAAiB,GAAG,GAAG,CAAC;AAErC,MAAM,UAAU,GAAG;IACjB,kBAAkB;IAClB,qBAAqB;IACrB,qBAAqB;IACrB,wBAAwB;IACxB,2BAA2B;CACnB,CAAC;AAGX,MAAM,CAAC,MAAM,yBAAyB,GAAG;IACvC,KAAK,EAAE,CAAC;SACL,KAAK,CAAC,UAAU,CAAC;SACjB,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,iBAAiB,CAAC;SACtB,QAAQ,CACP,2DAA2D;QACzD,WAAW,iBAAiB,qBAAqB,CACpD;IACH,SAAS,EAAE,CAAC;SACT,IAAI,CAAC,UAAU,CAAC;SAChB,OAAO,CAAC,kBAAkB,CAAC;SAC3B,QAAQ,CACP,2BAA2B;QACzB,oFAAoF;QACpF,4EAA4E;QAC5E,2DAA2D;QAC3D,gEAAgE;QAChE,iEAAiE,CACpE;IACH,WAAW,EAAE,CAAC;SACX,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,IAAI,CAAC;SACT,QAAQ,EAAE;SACV,QAAQ,CACP,sEAAsE;QACpE,8EAA8E,CACjF;CACJ,CAAC;AAQF,mEAAmE;AACnE,MAAM,aAAa,GAAwC;IACzD,gBAAgB,EAAE,eAAe;IACjC,mBAAmB,EAAE,iBAAiB;IACtC,mBAAmB,EAAE,aAAa;IAClC,sBAAsB,EAAE,uBAAuB;IAC/C,yBAAyB,EAAE,uBAAuB;CACnD,CAAC;AAEF,MAAM,CAAC,KAAK,UAAU,mBAAmB,CACvC,MAAiC,EACjC,MAAkB;IAElB,MAAM,QAAQ,GAAG,aAAa,CAAC,MAAM,CAAC,SAAS,IAAI,kBAAkB,CAAC,CAAC;IAEvE,MAAM,QAAQ,GAAG,MAAM,MAAM,CAAC,KAAK,CAAC;QAClC,MAAM,EAAE,QAAQ;QAChB,EAAE,EAAE,MAAM,CAAC,KAAK;QAChB,QAAQ;QACR,GAAG,EAAE,UAAU;KAChB,CAAC,CAAC;IAEH,MAAM,UAAU,GAAG,MAAM,CAAC,WAAW,CAAC;IAEtC,MAAM,QAAQ,GAAc,CAAC,QAAQ,CAAC,QAAQ,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;QACjE,MAAM,EAAE,EAAE,CAAC,MAAM;QACjB,GAAG,EAAE,EAAE,CAAC,GAAG;QACX,UAAU,EAAE,CAAC,EAAE,CAAC,UAAU,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,IAAoB,EAAE,EAAE;YAC7D,0EAA0E;YAC1E,IAAI,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE;gBAClC,IAAI,OAAO,IAAI,KAAK,QAAQ;oBAAE,OAAO,IAAI,CAAC;gBAC1C,OAAO,IAAI,CAAC,EAAE,CAAC;YACjB,CAAC,CAAC,CAAC;YACH,IAAI,UAAU,KAAK,SAAS,EAAE,CAAC;gBAC7B,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC;YACrC,CAAC;YACD,OAAO;gBACL,IAAI,EAAE,IAAI,CAAC,IAAI;gBACf,QAAQ,EAAE,IAAI,CAAC,QAAQ;gBACvB,KAAK;aACN,CAAC;QACJ,CAAC,CAAC;KACH,CAAC,CAAC,CAAC;IAEJ,OAAO,EAAE,QAAQ,EAAE,CAAC;AACtB,CAAC"}

package/dist/tools/getArticleMetadata.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"getArticleMetadata.d.ts","sourceRoot":"","sources":["../../src/tools/getArticleMetadata.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAC;AACtD,OAAO,KAAK,EAAiB,0BAA0B,EAAE,MAAM,oBAAoB,CAAC;AAIpF,gFAAgF;AAChF,eAAO,MAAM,kBAAkB,MAAM,CAAC;AAEtC,QAAA,MAAM,YAAY,iDAAkD,CAAC;AACrE,MAAM,MAAM,UAAU,GAAG,CAAC,OAAO,YAAY,CAAC,CAAC,MAAM,CAAC,CAAC;AAEvD,eAAO,MAAM,wBAAwB;;;;;;;;;CA4BpC,CAAC;AAEF,MAAM,MAAM,wBAAwB,GAAG;IACrC,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,OAAO,CAAC,EAAE,UAAU,CAAC;IACrB,oBAAoB,CAAC,EAAE,OAAO,CAAC;CAChC,CAAC;AAqBF,wBAAsB,kBAAkB,CACtC,MAAM,EAAE,wBAAwB,EAChC,MAAM,EAAE,UAAU,GACjB,OAAO,CAAC,0BAA0B,CAAC,CAuBrC"}
+{"version":3,"file":"getArticleMetadata.d.ts","sourceRoot":"","sources":["../../src/tools/getArticleMetadata.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAC;AACtD,OAAO,KAAK,EAAiB,0BAA0B,EAAE,MAAM,oBAAoB,CAAC;AAKpF,gFAAgF;AAChF,eAAO,MAAM,kBAAkB,MAAM,CAAC;AAEtC,QAAA,MAAM,YAAY,iDAAkD,CAAC;AACrE,MAAM,MAAM,UAAU,GAAG,CAAC,OAAO,YAAY,CAAC,CAAC,MAAM,CAAC,CAAC;AAEvD,eAAO,MAAM,wBAAwB;;;;;;;;;CA4BpC,CAAC;AAEF,MAAM,MAAM,wBAAwB,GAAG;IACrC,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,OAAO,CAAC,EAAE,UAAU,CAAC;IACrB,oBAAoB,CAAC,EAAE,OAAO,CAAC;CAChC,CAAC;AAqBF,wBAAsB,kBAAkB,CACtC,MAAM,EAAE,wBAAwB,EAChC,MAAM,EAAE,UAAU,GACjB,OAAO,CAAC,0BAA0B,CAAC,CAuBrC"}

package/dist/tools/getArticleMetadata.js

@@ -6,13 +6,14 @@
  */
 import { z } from 'zod';
 import { IMPORTANT_LEGAL_NOTICE } from '../pubmed/types.js';
+import { pmidSchema } from '../utils/ids.js';
 import { parsePubmedEfetchXml } from '../utils/xml.js';
 /** PMIDs per request; the CLI splits longer lists into batches of this size. */
 export const MAX_METADATA_PMIDS = 200;
 const AUTHOR_MODES = ['all', 'first_last', 'first', 'none'];
 export const getArticleMetadataSchema = {
     pmids: z
-        .array(z.string().min(1))
+        .array(pmidSchema)
         .min(1)
         .max(MAX_METADATA_PMIDS)
         .describe('Array of PubMed IDs (PMIDs) to retrieve metadata for. ' +

package/dist/tools/getArticleMetadata.js.map

@@ -1 +1 @@
-{"version":3,"file":"getArticleMetadata.js","sourceRoot":"","sources":["../../src/tools/getArticleMetadata.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,OAAO,EAAE,sBAAsB,EAAE,MAAM,oBAAoB,CAAC;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAC;AAEvD,gFAAgF;AAChF,MAAM,CAAC,MAAM,kBAAkB,GAAG,GAAG,CAAC;AAEtC,MAAM,YAAY,GAAG,CAAC,KAAK,EAAE,YAAY,EAAE,OAAO,EAAE,MAAM,CAAU,CAAC;AAGrE,MAAM,CAAC,MAAM,wBAAwB,GAAG;IACtC,KAAK,EAAE,CAAC;SACL,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;SACxB,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,kBAAkB,CAAC;SACvB,QAAQ,CACP,wDAAwD;QACtD,WAAW,kBAAkB,qBAAqB,CACrD;IACH,OAAO,EAAE,CAAC;SACP,IAAI,CAAC,YAAY,CAAC;SAClB,OAAO,CAAC,KAAK,CAAC;SACd,QAAQ,CACP,kEAAkE;QAChE,yCAAyC;QACzC,oFAAoF;QACpF,wCAAwC;QACxC,6BAA6B;QAC7B,uDAAuD,CAC1D;IACH,oBAAoB,EAAE,CAAC;SACpB,OAAO,EAAE;SACT,OAAO,CAAC,KAAK,CAAC;SACd,QAAQ,CACP,oEAAoE;QAClE,yEAAyE;QACzE,uBAAuB,CAC1B;CACJ,CAAC;AAQF,SAAS,aAAa,CAAC,OAAwB,EAAE,IAAgB;IAC/D,QAAQ,IAAI,EAAE,CAAC;QACb,KAAK,KAAK;YACR,OAAO,OAAO,CAAC;QACjB,KAAK,YAAY;YACf,OAAO,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,OAAO,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC;QAClF,KAAK,OAAO;YACV,OAAO,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QAC7B,KAAK,MAAM;YACT,OAAO,EAAE,CAAC;IACd,CAAC;AACH,CAAC;AAED,SAAS,mBAAmB,CAAC,MAAqB;IAChD,MAAM,IAAI,GAAG,EAAE,GAAG,MAAM,EAAE,CAAC;IAC3B,OAAO,IAAI,CAAC,YAAY,CAAC;IACzB,OAAO,IAAI,CAAC;AACd,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,MAAgC,EAChC,MAAkB;IAElB,MAAM,GAAG,GAAG,MAAM,MAAM,CAAC,MAAM,CAAC;QAC9B,EAAE,EAAE,QAAQ;QACZ,EAAE,EAAE,MAAM,CAAC,KAAK;QAChB,OAAO,EAAE,KAAK;QACd,OAAO,EAAE,UAAU;KACpB,CAAC,CAAC;IAEH,MAAM,IAAI,GAAG,MAAM,CAAC,OAAO,IAAI,KAAK,CAAC;IACrC,MAAM,mBAAmB,GAAG,MAAM,CAAC,oBAAoB,IAAI,KAAK,CAAC;IAEjE,MAAM,QAAQ,GAAG,oBAAoB,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;QAC3D,GAAG,OAAO;QACV,OAAO,EAAE,aAAa,CAAC,OAAO,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAC3D,mBAAmB,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,mBAAmB,CAAC,MAAM,CAAC,CAC3D;KACF,CAAC,CAAC,CAAC;IAEJ,OAAO;QACL,QAAQ;QACR,KAAK,EAAE,QAAQ,CAAC,MAAM;QACtB,sBAAsB,EAAE,sBAAsB;KAC/C,CAAC;AACJ,CAAC"}
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package/dist/tools/getCopyrightStatus.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"getCopyrightStatus.d.ts","sourceRoot":"","sources":["../../src/tools/getCopyrightStatus.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAC;AACtD,OAAO,KAAK,EAAE,0BAA0B,EAAmB,MAAM,oBAAoB,CAAC;AAGtF,gFAAgF;AAChF,eAAO,MAAM,mBAAmB,KAAK,CAAC;AAEtC,eAAO,MAAM,wBAAwB;;CAMpC,CAAC;AAEF,MAAM,MAAM,wBAAwB,GAAG;IACrC,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB,CAAC;AAKF,wBAAsB,kBAAkB,CACtC,MAAM,EAAE,wBAAwB,EAChC,MAAM,EAAE,UAAU,GACjB,OAAO,CAAC,0BAA0B,CAAC,CA4DrC"}
+{"version":3,"file":"getCopyrightStatus.d.ts","sourceRoot":"","sources":["../../src/tools/getCopyrightStatus.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAC;AACtD,OAAO,KAAK,EAAE,0BAA0B,EAAmB,MAAM,oBAAoB,CAAC;AAItF,gFAAgF;AAChF,eAAO,MAAM,mBAAmB,KAAK,CAAC;AAEtC,eAAO,MAAM,wBAAwB;;CAMpC,CAAC;AAEF,MAAM,MAAM,wBAAwB,GAAG;IACrC,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB,CAAC;AAKF,wBAAsB,kBAAkB,CACtC,MAAM,EAAE,wBAAwB,EAChC,MAAM,EAAE,UAAU,GACjB,OAAO,CAAC,0BAA0B,CAAC,CA4DrC"}

package/dist/tools/getCopyrightStatus.js

@@ -11,12 +11,13 @@
  * does not allow full-text XML download.
  */
 import { z } from 'zod';
+import { pmidSchema } from '../utils/ids.js';
 import { parsePmcAccessXml } from '../utils/xml.js';
 /** PMIDs per request; the CLI splits longer lists into batches of this size. */
 export const MAX_COPYRIGHT_PMIDS = 50;
 export const getCopyrightStatusSchema = {
     pmids: z
-        .array(z.string().min(1))
+        .array(pmidSchema)
         .min(1)
         .max(MAX_COPYRIGHT_PMIDS)
         .describe('Array of PubMed IDs (PMIDs) to check copyright status for.'),

package/dist/tools/getCopyrightStatus.js.map

@@ -1 +1 @@
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+{"version":3,"file":"getCopyrightStatus.js","sourceRoot":"","sources":["../../src/tools/getCopyrightStatus.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAC7C,OAAO,EAAE,iBAAiB,EAAsB,MAAM,iBAAiB,CAAC;AAExE,gFAAgF;AAChF,MAAM,CAAC,MAAM,mBAAmB,GAAG,EAAE,CAAC;AAEtC,MAAM,CAAC,MAAM,wBAAwB,GAAG;IACtC,KAAK,EAAE,CAAC;SACL,KAAK,CAAC,UAAU,CAAC;SACjB,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,mBAAmB,CAAC;SACxB,QAAQ,CAAC,4DAA4D,CAAC;CAC1E,CAAC;AAMF,mFAAmF;AACnF,MAAM,iBAAiB,GAAG,EAAE,CAAC;AAE7B,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,MAAgC,EAChC,MAAkB;IAElB,yDAAyD;IACzD,MAAM,YAAY,GAAG,MAAM,MAAM,CAAC,SAAS,CAAC;QAC1C,GAAG,EAAE,MAAM,CAAC,KAAK;QACjB,MAAM,EAAE,MAAM;KACf,CAAC,CAAC;IAEH,6DAA6D;IAC7D,MAAM,WAAW,GAAG,IAAI,GAAG,EAA8B,CAAC;IAC1D,KAAK,MAAM,MAAM,IAAI,YAAY,CAAC,OAAO,EAAE,CAAC;QAC1C,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,IAAI,MAAM,CAAC,cAAc,CAAC,CAAC;QACnD,IAAI,IAAI,EAAE,CAAC;YACT,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC;QAC9C,CAAC;IACH,CAAC;IAED,uEAAuE;IACvE,qEAAqE;IACrE,MAAM,MAAM,GAAG;QACb,GAAG,IAAI,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;KAC/E,CAAC;IACF,MAAM,aAAa,GAAG,IAAI,GAAG,EAAyB,CAAC;IACvD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,IAAI,iBAAiB,EAAE,CAAC;QAC1D,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,iBAAiB,CAAC,CAAC;QACrD,MAAM,GAAG,GAAG,MAAM,MAAM,CAAC,MAAM,CAAC;YAC9B,EAAE,EAAE,KAAK;YACT,EAAE,EAAE,KAAK,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC;YACpD,OAAO,EAAE,KAAK;SACf,CAAC,CAAC;QACH,KAAK,MAAM,IAAI,IAAI,iBAAiB,CAAC,GAAG,CAAC,EAAE,CAAC;YAC1C,aAAa,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,EAAE,IAAI,CAAC,CAAC;QACpD,CAAC;IACH,CAAC;IAED,MAAM,QAAQ,GAAsB,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE;QAC5D,MAAM,KAAK,GAAG,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QACpC,IAAI,CAAC,KAAK,EAAE,CAAC;YACX,OAAO,EAAE,IAAI,EAAE,aAAa,EAAE,KAAK,EAAE,CAAC;QACxC,CAAC;QAED,MAAM,IAAI,GAAG,aAAa,CAAC,GAAG,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,CAAC;QACpD,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,qEAAqE;YACrE,OAAO,EAAE,IAAI,EAAE,KAAK,EAAE,aAAa,EAAE,KAAK,EAAE,CAAC;QAC/C,CAAC;QAED,OAAO;YACL,IAAI;YACJ,KAAK;YACL,aAAa,EAAE,IAAI,CAAC,WAAW;YAC/B,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,OAAO,EAAE,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YAClD,GAAG,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAC,CAAC,EAAE,mBAAmB,EAAE,IAAI,CAAC,kBAAkB,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YACpF,cAAc,EAAE,IAAI,CAAC,YAAY;SAClC,CAAC;IACJ,CAAC,CAAC,CAAC;IAEH,OAAO;QACL,QAAQ;QACR,KAAK,EAAE,QAAQ,CAAC,MAAM;KACvB,CAAC;AACJ,CAAC;AAED,SAAS,QAAQ,CAAC,KAAyB;IACzC,OAAO,OAAO,KAAK,KAAK,QAAQ,IAAI,KAAK,KAAK,EAAE,CAAC;AACnD,CAAC"}

package/dist/tools/getFullTextArticle.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"getFullTextArticle.d.ts","sourceRoot":"","sources":["../../src/tools/getFullTextArticle.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAC;AACtD,OAAO,KAAK,EAAE,0BAA0B,EAAmB,MAAM,oBAAoB,CAAC;AAKtF,iFAAiF;AACjF,eAAO,MAAM,iBAAiB,KAAK,CAAC;AAEpC,eAAO,MAAM,wBAAwB;;CAWpC,CAAC;AAEF,MAAM,MAAM,wBAAwB,GAAG;IACrC,OAAO,EAAE,MAAM,EAAE,CAAC;CACnB,CAAC;AAYF,wBAAsB,kBAAkB,CACtC,MAAM,EAAE,wBAAwB,EAChC,MAAM,EAAE,UAAU,GACjB,OAAO,CAAC,0BAA0B,CAAC,CA6DrC"}

package/dist/tools/getFullTextArticle.js

@@ -8,12 +8,13 @@
  */
 import { z } from 'zod';
 import { IMPORTANT_LEGAL_NOTICE } from '../pubmed/types.js';
+import { pmcidSchema } from '../utils/ids.js';
 import { parsePmcEfetchXml } from '../utils/xml.js';
 /** PMCIDs per request; the CLI splits longer lists into batches of this size. */
 export const MAX_FULL_TEXT_IDS = 20;
 export const getFullTextArticleSchema = {
     pmc_ids: z
-        .array(z.string().min(1))
+        .array(pmcidSchema)
         .min(1)
         .max(MAX_FULL_TEXT_IDS)
         .describe('Array of PubMed Central IDs (PMCIDs) to retrieve full text for. ' +

package/dist/tools/getFullTextArticle.js.map

@@ -1 +1 @@
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+{"version":3,"file":"getFullTextArticle.js","sourceRoot":"","sources":["../../src/tools/getFullTextArticle.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,OAAO,EAAE,sBAAsB,EAAE,MAAM,oBAAoB,CAAC;AAC5D,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAC;AAC9C,OAAO,EAAE,iBAAiB,EAAE,MAAM,iBAAiB,CAAC;AAEpD,iFAAiF;AACjF,MAAM,CAAC,MAAM,iBAAiB,GAAG,EAAE,CAAC;AAEpC,MAAM,CAAC,MAAM,wBAAwB,GAAG;IACtC,OAAO,EAAE,CAAC;SACP,KAAK,CAAC,WAAW,CAAC;SAClB,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,iBAAiB,CAAC;SACtB,QAAQ,CACP,kEAAkE;QAChE,6EAA6E;QAC7E,qEAAqE;QACrE,yBAAyB,CAC5B;CACJ,CAAC;AAMF,oEAAoE;AACpE,SAAS,cAAc,CAAC,EAAU;IAChC,MAAM,OAAO,GAAG,EAAE,CAAC,IAAI,EAAE,CAAC;IAC1B,OAAO,OAAO,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC;AAC9E,CAAC;AAED,SAAS,cAAc,CAAC,EAAU;IAChC,OAAO,MAAM,cAAc,CAAC,EAAE,CAAC,EAAE,CAAC,WAAW,EAAE,CAAC;AAClD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,MAAgC,EAChC,MAAkB;IAElB,iEAAiE;IACjE,MAAM,UAAU,GAAG,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;IAEtD,MAAM,GAAG,GAAG,MAAM,MAAM,CAAC,MAAM,CAAC;QAC9B,EAAE,EAAE,KAAK;QACT,EAAE,EAAE,UAAU;QACd,OAAO,EAAE,KAAK;KACf,CAAC,CAAC;IAEH,IAAI,cAAiC,CAAC;IACtC,IAAI,CAAC;QACH,cAAc,GAAG,iBAAiB,CAAC,GAAG,CAAC,CAAC;IAC1C,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,wBAAwB,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAC9D,OAAO;YACL,sBAAsB,EAAE,sBAAsB;YAC9C,QAAQ,EAAE,EAAE;YACZ,MAAM,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;gBACrC,KAAK,EAAE,cAAc,CAAC,KAAK,CAAC;gBAC5B,KAAK,EAAE,0CAA0C;aAClD,CAAC,CAAC;YACH,KAAK,EAAE,CAAC;SACT,CAAC;IACJ,CAAC;IAED,MAAM,QAAQ,GAAsB,EAAE,CAAC;IACvC,MAAM,MAAM,GAAyC,EAAE,CAAC;IACxD,MAAM,WAAW,GAAG,IAAI,GAAG,EAAU,CAAC;IAEtC,KAAK,MAAM,CAAC,KAAK,EAAE,OAAO,CAAC,IAAI,cAAc,CAAC,OAAO,EAAE,EAAE,CAAC;QACxD,MAAM,KAAK,GAAG,OAAO,CAAC,WAAW,CAAC,KAAK;YACrC,CAAC,CAAC,cAAc,CAAC,OAAO,CAAC,WAAW,CAAC,KAAK,CAAC;YAC3C,CAAC,CAAC,cAAc,CAAC,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;QAChD,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;QAEvB,IAAI,OAAO,CAAC,SAAS,CAAC,IAAI,EAAE,EAAE,CAAC;YAC7B,QAAQ,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;QACzB,CAAC;aAAM,CAAC;YACN,MAAM,CAAC,IAAI,CAAC;gBACV,KAAK;gBACL,KAAK,EAAE,8DAA8D;aACtE,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,KAAK,MAAM,KAAK,IAAI,IAAI,GAAG,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC,EAAE,CAAC;QAChE,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC;YAC5B,MAAM,CAAC,IAAI,CAAC;gBACV,KAAK;gBACL,KAAK,EAAE,yCAAyC;aACjD,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,OAAO;QACL,sBAAsB,EAAE,sBAAsB;QAC9C,QAAQ;QACR,MAAM;QACN,KAAK,EAAE,QAAQ,CAAC,MAAM;KACvB,CAAC;AACJ,CAAC"}

package/dist/utils/ids.d.ts

@@ -0,0 +1,17 @@
+/**
+ * Zod schemas for article IDs in tool arguments.
+ *
+ * Each value must be a single ID. NCBI reads commas as separators, so a value
+ * such as "1,2,3" would otherwise carry any number of IDs past a tool's
+ * per-request limit.
+ */
+import { z } from 'zod';
+export declare const pmidSchema: z.ZodString;
+/**
+ * With or without the "PMC" prefix, in any case. Spelled without the i flag,
+ * which the JSON Schema in tools/list cannot carry.
+ */
+export declare const pmcidSchema: z.ZodString;
+/** A PMID, PMCID, or DOI. */
+export declare const articleIdSchema: z.ZodString;
+//# sourceMappingURL=ids.d.ts.map

package/dist/utils/ids.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ids.d.ts","sourceRoot":"","sources":["../../src/utils/ids.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,eAAO,MAAM,UAAU,aAA4D,CAAC;AAEpF;;;GAGG;AACH,eAAO,MAAM,WAAW,aAE4C,CAAC;AAErE,6BAA6B;AAC7B,eAAO,MAAM,eAAe,aAE0C,CAAC"}

package/dist/utils/ids.js

@@ -0,0 +1,21 @@
+/**
+ * Zod schemas for article IDs in tool arguments.
+ *
+ * Each value must be a single ID. NCBI reads commas as separators, so a value
+ * such as "1,2,3" would otherwise carry any number of IDs past a tool's
+ * per-request limit.
+ */
+import { z } from 'zod';
+export const pmidSchema = z.string().regex(/^\d+$/, 'must be a PMID (digits only)');
+/**
+ * With or without the "PMC" prefix, in any case. Spelled without the i flag,
+ * which the JSON Schema in tools/list cannot carry.
+ */
+export const pmcidSchema = z
+    .string()
+    .regex(/^([Pp][Mm][Cc])?\d+$/, 'must be a PMCID, e.g. PMC7984072');
+/** A PMID, PMCID, or DOI. */
+export const articleIdSchema = z
+    .string()
+    .regex(/^[^\s,]+$/, 'must be a single ID, without commas or spaces');
+//# sourceMappingURL=ids.js.map

package/dist/utils/ids.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ids.js","sourceRoot":"","sources":["../../src/utils/ids.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,MAAM,CAAC,MAAM,UAAU,GAAG,CAAC,CAAC,MAAM,EAAE,CAAC,KAAK,CAAC,OAAO,EAAE,8BAA8B,CAAC,CAAC;AAEpF;;;GAGG;AACH,MAAM,CAAC,MAAM,WAAW,GAAG,CAAC;KACzB,MAAM,EAAE;KACR,KAAK,CAAC,sBAAsB,EAAE,kCAAkC,CAAC,CAAC;AAErE,6BAA6B;AAC7B,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC;KAC7B,MAAM,EAAE;KACR,KAAK,CAAC,WAAW,EAAE,+CAA+C,CAAC,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@djmima/pubmed-mcp",
-  "version": "1.0.1",
+  "version": "1.1.0",
   "description": "MCP server providing access to PubMed biomedical literature and citations",
   "license": "MIT",
   "author": "DJ MIMA",
@@ -45,10 +45,10 @@
     "prepublishOnly": "npm run typecheck && npm run lint && npm test && npm run build"
   },
   "dependencies": {
-    "@modelcontextprotocol/sdk": "^1.12.0",
-    "axios": "^1.7.9",
+    "@modelcontextprotocol/sdk": "^1.32.2",
+    "axios": "^1.20.0",
     "dotenv": "^17.3.1",
-    "express": "^4.21.0",
+    "express": "^4.22.3",
     "fast-xml-parser": "^5.11.2",
     "jose": "^5.10.0",
     "zod": "^4.6.7"