@dikolab/kbdb 0.4.0 → 0.4.3

package/docs/release-notes/0.4.1.md

@@ -0,0 +1,149 @@
+# 0.4.1
+
+*Patch release -- 2026-06-26*
+
+Built-in TF-IDF embedding provider so hybrid search
+works out of the box with zero configuration.
+Structured logging across the entire TypeScript
+layer with configurable verbosity. Daemon lifecycle
+fixes for reliable shutdown on bare Linux TTY.
+Non-interactive mode for scripts, CI, and automated
+testing.
+
+---
+
+## Engine
+
+- **New WASM crate: `kbdb-default-embedding`** --
+  computes 256-dimensional feature-hashed sublinear
+  TF vectors using FNV-1a with the sign trick
+  (Weinberger et al., 2009). Pure computation, no
+  host imports.
+- **Pipeline moved to `kbdb-shared`** -- the 9-stage
+  tokenization pipeline (NFC normalization, Unicode
+  segmentation, camelCase splitting, stop-word
+  removal, synonym expansion, Snowball stemming)
+  moved from `kbdb-query-parser` to `kbdb-shared`.
+  Both `kbdb-query-parser` and
+  `kbdb-default-embedding` now share a single source
+  of truth, keeping TF-IDF vectors token-consistent
+  with the lexical index.
+
+## Daemon
+
+- **Loads `default-embedding.wasm` at startup** --
+  the worker daemon loads the new standalone WASM
+  module alongside the existing `kb-worker.wasm`.
+  If the module is missing, the daemon gracefully
+  falls back to `NullEmbeddingProvider`.
+- **Daemon lifecycle fixes** -- socket-level
+  connection tracking replaces the broken
+  server-level `close` handler, so the idle timer
+  fires correctly. `stop()` force-closes lingering
+  sockets. `worker stop` polls until the daemon
+  actually exits (5 s cap) instead of fire-and-forget
+  SIGTERM. `retryOnTimeout` kills a stuck daemon
+  before spawning a fresh one.
+- **Accepts `--log-level`** -- the daemon parses an
+  optional `--log-level <level>` argument forwarded
+  by the spawner from the `KBDB_LOG_LEVEL` env var.
+
+## CLI
+
+- **`--non-interactive` flag** -- suppresses
+  interactive prompts and uses default values.
+  When set, data commands that find no `.kbdb`
+  directory return an error instead of prompting
+  to create one.
+- **`KBDB_NON_INTERACTIVE` env var** -- same effect
+  as `--non-interactive`. Accepts `1` or `true`.
+  CLI flag takes priority.
+- **Deprecation warnings fixed** -- `--init` and
+  `--migrate` deprecation messages now emit at all
+  log levels. Previously they fired before log
+  configuration and were suppressed.
+
+## Embedding
+
+- **`TfidfEmbeddingProvider`** -- new provider backed
+  by the `kbdb-default-embedding` WASM module.
+  Returns 256-dimensional L2-normalized vectors.
+  Model name: `tfidf-v1`.
+- **New factory default** -- when no `[embedding]`
+  section is present in `worker.toml`, the factory
+  returns `TfidfEmbeddingProvider` instead of
+  `NullEmbeddingProvider`. Hybrid and vector search
+  work without configuration.
+- **Explicit disable** -- setting `provider = "none"`
+  in `worker.toml` still returns
+  `NullEmbeddingProvider`, which rejects hybrid and
+  vector search with a structured error.
+
+## Logging
+
+- **New `log` module** (`src/shared/log/`) --
+  structured logging with four levels (`DEBUG`,
+  `INFO`, `WARNING`, `ERROR`), per-level Unicode
+  icons (▸ℹ⚠✖), per-level ANSI colors, and
+  configurable output targets. Default level is
+  `ERROR` (errors only).
+- **CLI verbose flags** -- `-v` (warnings), `-vv`
+  (info), `-vvv` (debug). `-v` is reassigned from
+  `--version` to `--verbose`; `--version` has no
+  short alias.
+- **`KBDB_LOG_LEVEL` env var** -- accepts `debug`,
+  `info`, `warning`, `error` (case-insensitive).
+  CLI flags take priority over the env var.
+- **Comprehensive lifecycle logging** -- milestone
+  logging at key process points across CLI command
+  runners, MCP server lifecycle, worker daemon IPC
+  dispatch, embedding providers, worker client
+  discovery, and auto-capture. Full IPC lifecycle
+  coverage: daemon startup/shutdown, socket
+  connections, request dispatch, retry logic,
+  daemon discovery, write lock events, and idle
+  timer. Pre-throw error logging at all throw
+  sites. All `console.error` calls replaced with
+  `log()`.
+
+## Documentation
+
+- **Hybrid search docs aligned** -- updated
+  architecture, CLI/MCP surface, and design
+  constraint sections to reflect the new WASM crate
+  and `--algo` flag.
+- **Worker daemon docs updated** -- WASM module
+  count, loading diagram, and distribution section
+  now describe four modules.
+- **Factory docs corrected** -- `type:` references
+  fixed to `provider:`, factory mapping table
+  updated for the new default.
+- **Log module docs added** -- module overview,
+  functions reference, typings reference, and
+  constants reference under
+  `docs/modules/typescript/shared/log/`.
+- **CLI and worker daemon docs updated** -- verbose
+  flags (`-v`/`-vv`/`-vvv`), `--log-level` arg,
+  `KBDB_LOG_LEVEL` env var documented across CLI,
+  worker daemon, and shared module pages.
+- **E2E test harness hardened** -- `run_kbdb`
+  wrapper wraps all `kbdb` calls in `timeout -k 5`
+  with SIGKILL fallback. Timeouts report as test
+  failures. GNU `coreutils` added to Docker image.
+  Non-interactive mode enabled for all E2E tests.
+- **Completed todos and issues archived** -- three
+  todo docs (pipeline move, TF-IDF provider, default
+  wiring) and two issue docs (daemon lifecycle hang,
+  hybrid search errors) moved to `archived/`.
+
+---
+
+## Upgrade
+
+```sh
+# Node.js
+npm install -g @dikolab/kbdb@0.4.1
+
+# Deno
+deno install -Agf jsr:@dikolab/kbdb/cli
+```

package/docs/release-notes/0.4.3.md

@@ -0,0 +1,60 @@
+# 0.4.3
+
+*Patch release -- 2026-06-27*
+
+Harden build pipeline and fix documentation links.
+Dynamic WASM build script, fresh-build E2E pre-test,
+and absolute URLs so npm README links work.
+
+---
+
+## Build Pipeline
+
+- **Dynamic `build-wasm.sh`** -- the script now
+  auto-discovers cdylib crates from
+  `engine/Cargo.toml` instead of hardcoding a list.
+  Adding a new WASM crate requires zero script edits.
+- **E2E pre-test `00-build-assets.sh`** -- builds
+  WASM, installs deps, and rebuilds dist/ fresh
+  before every E2E run. Prevents stale artifacts
+  from producing false test passes.
+- **Dockerfile simplified** -- removed the
+  `wasm-builder` stage and baked WASM cache. The
+  image now contains only toolchains; all build
+  logic lives in mounted host scripts. No image
+  rebuild needed when adding WASM crates.
+- **Deleted `sync-wasm.sh`** -- replaced by direct
+  `build-wasm.sh` invocation. Eliminates the stale
+  Docker cache path that caused missing
+  `default-embedding` in prior builds.
+
+## Documentation
+
+- **npm README links fixed** -- all relative links
+  (`docs/`, `LICENSE`, `Makefile`) converted to
+  absolute GitLab URLs so they resolve on npmjs.com.
+- **WASM paths corrected** -- fixed
+  `src/shared/worker-daemon/wasm/` to `src/wasm/`
+  across all skills, agents, CLAUDE.md, and module
+  docs.
+- **Crate counts updated** -- "five crates" to "six
+  crates" and "three cdylib" to "five cdylib" in all
+  documentation.
+- **Publish skill hardened** -- Steps 8 and 10 now
+  verify correct WASM filenames (with `kbdb_` prefix)
+  and include `default-embedding`.
+- **Verification Standards added to CLAUDE.md** --
+  Never Fabricate Results, Silent Failures, and When
+  Stuck sections.
+
+---
+
+## Upgrade
+
+```sh
+# Node.js
+npm install -g @dikolab/kbdb@0.4.3
+
+# Deno
+deno install -Agf jsr:@dikolab/kbdb/cli
+```

package/package.json

@@ -1,6 +1,6 @@
 {
    "name": "@dikolab/kbdb",
-   "version": "0.4.0",
+   "version": "0.4.3",
    "description": "CLI tool and MCP server for a file-based knowledge base database -- index documents, search with ranked results, and recall context for AI agents",
    "publishConfig": {
       "access": "public"
@@ -70,7 +70,7 @@
       "lint:fix": "eslint --fix",
       "test": "vitest --run",
       "build": "node esbuild.config.js",
-      "build:wasm": "cd engine && wasm-pack build crates/query-parser --target no-modules --out-dir ../../../src/wasm/query-parser && wasm-pack build crates/fs-database --target no-modules --out-dir ../../../src/wasm/fs-database && wasm-pack build crates/kb-worker --target no-modules --out-dir ../../../src/wasm/kb-worker",
+      "build:wasm": "cd engine && wasm-pack build crates/query-parser --target no-modules --out-dir ../../../src/wasm/query-parser && wasm-pack build crates/fs-database --target no-modules --out-dir ../../../src/wasm/fs-database && wasm-pack build crates/default-embedding --target no-modules --out-dir ../../../src/wasm/default-embedding && wasm-pack build crates/kb-worker --target no-modules --out-dir ../../../src/wasm/kb-worker",
       "build:all": "npm run build:wasm && npm run build"
    },
    "devDependencies": {

package/dist/chunk-BJPSPNGX.mjs.map

@@ -1,7 +0,0 @@
-{
-  "version": 3,
-  "sources": ["../src/shared/runtime/functions/detect-runtime.ts", "../src/shared/runtime/functions/get-args.ts", "../src/shared/dir-resolver/functions/resolve-base-dir.function.ts", "../src/shared/dir-resolver/functions/join-path.function.ts", "../src/shared/dir-resolver/functions/resolve-worker-script.function.ts", "../src/shared/dir-resolver/functions/resolve-wasm-dir.function.ts", "../src/shared/worker-daemon/constants/daemon-defaults.constant.ts", "../src/shared/worker-daemon/functions/parse-embedding-section.function.ts", "../src/shared/auto-capture/constants/auto-capture-defaults.constant.ts", "../src/shared/worker-daemon/functions/parse-auto-capture-section.function.ts", "../src/shared/worker-daemon/functions/parse-worker-toml.function.ts", "../src/shared/hash/functions/compute-sha256.ts", "../src/shared/platform/functions/get-ipc-path.function.ts", "../src/shared/platform/functions/get-tmpdir.function.ts"],
-  "sourcesContent": ["import type { Runtime } from '../typings/runtime.ts';\n\n/**\n * Detects the current JavaScript runtime environment.\n *\n * Returns `'deno'` when the global `Deno` object is present,\n * otherwise returns `'node'`.\n */\nexport function detectRuntime(): Runtime {\n   if (typeof globalThis !== 'undefined' && 'Deno' in globalThis) {\n      return 'deno';\n   }\n   return 'node';\n}\n", "import { detectRuntime } from './detect-runtime.ts';\n\n/**\n * Returns the command-line arguments for the current runtime.\n *\n * In Deno, reads `Deno.args`; in Node.js, slices `process.argv`\n * past the interpreter and script entries.\n */\nexport function getArgs(): string[] {\n   if (detectRuntime() === 'deno') {\n      const g = globalThis as Record<string, unknown>;\n      const deno = g['Deno'] as { args: string[] } | undefined;\n      return deno?.args ?? [];\n   }\n   return process.argv.slice(2);\n}\n", "import { dirname } from 'node:path';\nimport { fileURLToPath } from 'node:url';\n\nimport type { BaseDir } from '../typings/base-dir.interface.ts';\n\nexport function resolveScriptDir(\n   entryUrl: string,\n   entryDirname?: string,\n): string {\n   if (entryDirname) return entryDirname;\n   if (entryUrl.startsWith('file:'))\n      return dirname(fileURLToPath(entryUrl));\n   return dirname(entryUrl);\n}\n\nexport function resolveBaseDir(\n   entryUrl: string,\n   entryDirname?: string,\n): BaseDir {\n   const scriptDir =\n      typeof __dirname !== 'undefined'\n         ? __dirname\n         : resolveScriptDir(entryUrl, entryDirname);\n   return { scriptDir, cwd: process.cwd() };\n}\n", "import { join } from 'node:path';\n\nexport function isRemoteUrl(path: string): boolean {\n   return path.startsWith('http://') || path.startsWith('https://');\n}\n\nexport function joinPath(base: string, ...segments: string[]): string {\n   if (isRemoteUrl(base)) {\n      const trailing = base.endsWith('/') ? '' : '/';\n      return base + trailing + segments.join('/');\n   }\n   return join(base, ...segments);\n}\n", "import { joinPath } from './join-path.function.ts';\n\nimport type { Runtime } from '../../runtime/typings/runtime.ts';\n\nexport function resolveWorkerScript(\n   scriptDir: string,\n   runtime: Runtime,\n): string {\n   if (runtime === 'deno') {\n      return joinPath(scriptDir, 'worker.ts');\n   }\n   return joinPath(scriptDir, 'kbdb-worker.cjs');\n}\n", "import { joinPath } from './join-path.function.ts';\n\nexport function resolveWasmDir(scriptDir: string): string {\n   return joinPath(scriptDir, 'wasm');\n}\n", "/** Default maximum number of items held in daemon memory. */\nexport const DEFAULT_ITEM_LIMIT = 1000;\n\n/** Default maximum number of index entries held in daemon memory. */\nexport const DEFAULT_INDEX_LIMIT = 100;\n\n/**\n * Default idle timeout in milliseconds before the daemon shuts\n * down automatically (5 minutes).\n */\nexport const DEFAULT_TIMEOUT_MS = 300_000;\n\n/**\n * Default time-to-live in milliseconds for each cached item\n * (1 minute).\n */\nexport const DEFAULT_ITEM_TTL_MS = 60_000;\n\n/** Filename of the daemon configuration file inside `.kbdb/`. */\nexport const WORKER_TOML_FILENAME = 'worker.toml';\n\n/**\n * Database format version the daemon supports.\n *\n * Read from `catalog.toml` at startup. If the catalog version\n * differs, the daemon prints a structured error to stderr and\n * exits with code 1 before loading any WASM modules.\n */\nexport const DB_FORMAT_VERSION = 1;\n", "import type { EmbeddingConfig } from '../../embedding/typings/embedding-config.interface.ts';\n\n/**\n * Parses key-value pairs from a `[embedding]` TOML section into an\n * `EmbeddingConfig`.\n *\n * Recognises: `provider`, `model`, `endpoint`, `dimensions`.\n * Unknown keys are silently ignored. Returns `undefined` when the\n * `provider` key is absent from the supplied entries.\n *\n * @param entries - key-value pairs from inside the `[embedding]`\n *   section\n */\nexport function parseEmbeddingSection(\n   entries: ReadonlyMap<string, string>,\n): EmbeddingConfig | undefined {\n   const provider = entries.get('provider') as\n      | EmbeddingConfig['provider']\n      | undefined;\n\n   if (!provider) {\n      return undefined;\n   }\n\n   const model = entries.get('model');\n   const endpoint = entries.get('endpoint');\n   const dimensionsRaw = entries.get('dimensions');\n   const dimensions = dimensionsRaw\n      ? parseInt(dimensionsRaw, 10) || undefined\n      : undefined;\n\n   return {\n      provider,\n      ...(model !== undefined ? { model } : {}),\n      ...(endpoint !== undefined ? { endpoint } : {}),\n      ...(dimensions !== undefined ? { dimensions } : {}),\n   };\n}\n", "import type { AutoCaptureConfig } from '../typings/auto-capture-config.interface.ts';\n\n/**\n * Default configuration for the auto-capture feature.\n *\n * Auto-capture is disabled by default. Enable it in\n * `worker.toml` under `[auto_capture]`.\n */\nexport const AUTO_CAPTURE_DEFAULTS: AutoCaptureConfig = {\n   enabled: false,\n   triggerAfterToolCalls: 5,\n   minIntervalMs: 60_000,\n   maxCapturesPerSession: 10,\n   dryRun: false,\n};\n", "import type { AutoCaptureConfig } from '../../auto-capture/typings/auto-capture-config.interface.ts';\nimport { AUTO_CAPTURE_DEFAULTS } from '../../auto-capture/constants/auto-capture-defaults.constant.ts';\n\n/**\n * Parses key-value pairs from an `[auto_capture]` TOML section\n * into an `AutoCaptureConfig`.\n *\n * Recognised keys: `enabled`, `trigger_after_tool_calls`,\n * `min_interval_ms`, `max_captures_per_session`, `dry_run`.\n * Unknown keys are silently ignored. Falls back to\n * `AUTO_CAPTURE_DEFAULTS` for any absent key.\n *\n * @param entries - key-value pairs from inside the\n *   `[auto_capture]` section\n */\nexport function parseAutoCaptureSection(\n   entries: ReadonlyMap<string, string>,\n): AutoCaptureConfig {\n   const enabled = entries.has('enabled')\n      ? entries.get('enabled') === 'true'\n      : AUTO_CAPTURE_DEFAULTS.enabled;\n\n   const dryRun = entries.has('dry_run')\n      ? entries.get('dry_run') === 'true'\n      : AUTO_CAPTURE_DEFAULTS.dryRun;\n\n   const triggerRaw = entries.get('trigger_after_tool_calls');\n   const triggerAfterToolCalls = triggerRaw\n      ? parseInt(triggerRaw, 10) ||\n        AUTO_CAPTURE_DEFAULTS.triggerAfterToolCalls\n      : AUTO_CAPTURE_DEFAULTS.triggerAfterToolCalls;\n\n   const intervalRaw = entries.get('min_interval_ms');\n   const minIntervalMs = intervalRaw\n      ? parseInt(intervalRaw, 10) || AUTO_CAPTURE_DEFAULTS.minIntervalMs\n      : AUTO_CAPTURE_DEFAULTS.minIntervalMs;\n\n   const capRaw = entries.get('max_captures_per_session');\n   const maxCapturesPerSession = capRaw\n      ? parseInt(capRaw, 10) ||\n        AUTO_CAPTURE_DEFAULTS.maxCapturesPerSession\n      : AUTO_CAPTURE_DEFAULTS.maxCapturesPerSession;\n\n   return {\n      enabled,\n      triggerAfterToolCalls,\n      minIntervalMs,\n      maxCapturesPerSession,\n      dryRun,\n   };\n}\n", "import type { DaemonConfig } from '../typings/daemon-config.interface.ts';\nimport {\n   DEFAULT_ITEM_LIMIT,\n   DEFAULT_INDEX_LIMIT,\n   DEFAULT_TIMEOUT_MS,\n   DEFAULT_ITEM_TTL_MS,\n} from '../constants/daemon-defaults.constant.ts';\nimport { parseEmbeddingSection } from './parse-embedding-section.function.ts';\nimport { parseAutoCaptureSection } from './parse-auto-capture-section.function.ts';\n\ninterface RootAccum {\n   itemLimit: number;\n   indexLimit: number;\n   timeoutMs: number;\n   itemTtlMs: number;\n}\n\nfunction applyRootKey(\n   acc: RootAccum,\n   key: string,\n   value: string,\n): void {\n   switch (key) {\n      case 'item_limit':\n         acc.itemLimit = parseInt(value, 10) || DEFAULT_ITEM_LIMIT;\n         break;\n      case 'index_limit':\n         acc.indexLimit = parseInt(value, 10) || DEFAULT_INDEX_LIMIT;\n         break;\n      case 'timeout_ms':\n         acc.timeoutMs = parseInt(value, 10) || DEFAULT_TIMEOUT_MS;\n         break;\n      case 'item_ttl_ms':\n         acc.itemTtlMs = parseInt(value, 10) || DEFAULT_ITEM_TTL_MS;\n         break;\n      default:\n         break;\n   }\n}\n\n/**\n * Parses a `worker.toml` file body into a partial `DaemonConfig`.\n *\n * Handles `[embedding]` sub-sections and root key-value pairs.\n * Unknown keys are silently ignored.\n *\n * @param text - raw content of `worker.toml`\n * @param contextPath - daemon context directory path\n */\nexport function parseWorkerToml(\n   text: string,\n   contextPath: string,\n): DaemonConfig {\n   let section = '';\n   const embeddingEntries = new Map<string, string>();\n   const autoCaptureEntries = new Map<string, string>();\n   const acc: RootAccum = {\n      itemLimit: DEFAULT_ITEM_LIMIT,\n      indexLimit: DEFAULT_INDEX_LIMIT,\n      timeoutMs: DEFAULT_TIMEOUT_MS,\n      itemTtlMs: DEFAULT_ITEM_TTL_MS,\n   };\n\n   for (const line of text.split('\\n')) {\n      const trimmed = line.trim();\n      if (trimmed === '[embedding]') {\n         section = 'embedding';\n         continue;\n      }\n      if (trimmed === '[auto_capture]') {\n         section = 'auto_capture';\n         continue;\n      }\n      if (trimmed.startsWith('[')) {\n         section = '';\n         continue;\n      }\n      if (trimmed.startsWith('#') || !trimmed.includes('=')) continue;\n      const eqIdx = trimmed.indexOf('=');\n      const key = trimmed.slice(0, eqIdx).trim();\n      const value = trimmed.slice(eqIdx + 1).trim();\n      if (section === 'embedding') {\n         embeddingEntries.set(key, value);\n         continue;\n      }\n      if (section === 'auto_capture') {\n         autoCaptureEntries.set(key, value);\n         continue;\n      }\n      applyRootKey(acc, key, value);\n   }\n\n   const embedding = parseEmbeddingSection(embeddingEntries);\n   const autoCapture =\n      autoCaptureEntries.size > 0\n         ? parseAutoCaptureSection(autoCaptureEntries)\n         : undefined;\n   return {\n      contextPath,\n      ...acc,\n      ...(embedding !== undefined ? { embedding } : {}),\n      ...(autoCapture !== undefined ? { autoCapture } : {}),\n   };\n}\n", "/**\n * Computes the SHA-256 hash of a UTF-8 string.\n *\n * Uses the Web Crypto API (`crypto.subtle`), which is available\n * in both Deno and Node.js >= 20 without additional imports.\n *\n * @param input - the string to hash\n * @returns lowercase hex-encoded SHA-256 digest (64 characters)\n */\nexport async function computeSha256(input: string): Promise<string> {\n   const data = new TextEncoder().encode(input);\n   const hash = await crypto.subtle.digest('SHA-256', data);\n   const bytes = new Uint8Array(hash);\n   return Array.from(bytes)\n      .map((b) => b.toString(16).padStart(2, '0'))\n      .join('');\n}\n", "import { join } from 'node:path';\nimport { getTmpdir } from './get-tmpdir.function.ts';\n\n/**\n * Returns the platform-appropriate IPC socket path for a given\n * context identifier.\n *\n * On Windows, returns a named pipe path (`\\\\.\\pipe\\kbdb-<ctx>`).\n * On POSIX systems, returns a Unix domain socket path under the\n * system temp directory (`<tmpdir>/kbdb-<ctx>.sock`).\n *\n * @param ctx - unique context identifier embedded in the path\n */\nexport function getIpcPath(ctx: string): string {\n   if (process.platform === 'win32') {\n      return `\\\\\\\\.\\\\pipe\\\\kbdb-${ctx}`;\n   }\n   return join(getTmpdir(), `kbdb-${ctx}.sock`);\n}\n", "import { tmpdir } from 'node:os';\n\n/**\n * Returns the operating system's default temporary directory path.\n */\nexport function getTmpdir(): string {\n   return tmpdir();\n}\n"],
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