@digital-science-dsl/dimensions-analytics-mcp 0.5.3 → 1.0.1

package/dist/mcp/tools/policy-profile.js

@@ -1,174 +0,0 @@
-/**
- * Policy document profile tool for the MCP server.
- * Provides deep profiling of policy documents including structural links
- * to cited publications and their supporting grants.
- * @module mcp/tools/policy-profile
- */
-import { ErrorCode, McpError } from "@modelcontextprotocol/sdk/types.js";
-import { z } from "zod";
-import { asArray, formatErrorResult, formatToolResult, READ_ONLY_API_ANNOTATIONS, } from "../utils.js";
-/**
- * Registers the policy_document_profile tool with the MCP server.
- * @param server - MCP server instance
- * @param client - Dimensions client instance
- */
-export function registerPolicyProfileTools(server, client) {
-    server.registerTool("policy_document_profile", {
-        description: "Get a comprehensive profile for a policy document including its cited publications and their supporting grants. Uses structural links (publication_ids) rather than free-text search to trace the evidence chain from policy back to funded research.",
-        inputSchema: {
-            policyDocId: z.string().optional().describe("Dimensions policy document ID"),
-            query: z
-                .string()
-                .optional()
-                .describe("Search term to find policy documents (used when policyDocId is not known)"),
-            includeLinkedPublications: z
-                .boolean()
-                .default(true)
-                .describe("Include cited publications and their supporting grants"),
-            publicationLimit: z
-                .number()
-                .int()
-                .min(1)
-                .max(50)
-                .default(20)
-                .describe("Max linked publications to return"),
-        },
-        outputSchema: {
-            found: z.boolean().describe("Whether the policy document was found"),
-            profile: z
-                .record(z.string(), z.unknown())
-                .optional()
-                .describe("Policy document profile with linked entities"),
-            message: z.string().optional().describe("Message when not found"),
-        },
-        annotations: READ_ONLY_API_ANNOTATIONS,
-    }, async (args) => {
-        if (!args.policyDocId && !args.query) {
-            throw new McpError(ErrorCode.InvalidParams, "Must provide at least one of: policyDocId or query");
-        }
-        try {
-            // Step 1: Find the policy document
-            let policyDsl;
-            if (args.policyDocId) {
-                policyDsl = client
-                    .createQueryBuilder()
-                    .search("policy_documents")
-                    .where("id", "=", args.policyDocId)
-                    .fields([
-                    "id",
-                    "title",
-                    "year",
-                    "publisher_org",
-                    "linkout",
-                    "publisher_org",
-                    "publication_ids",
-                ])
-                    .limit(1)
-                    .build();
-            }
-            else {
-                policyDsl = client
-                    .createQueryBuilder()
-                    .search("policy_documents")
-                    .for(args.query)
-                    .fields([
-                    "id",
-                    "title",
-                    "year",
-                    "publisher_org",
-                    "linkout",
-                    "publisher_org",
-                    "publication_ids",
-                ])
-                    .limit(5)
-                    .build();
-            }
-            const policyResponse = await client.rawQuery(policyDsl);
-            const policyDocs = asArray(policyResponse.policy_documents);
-            if (policyDocs.length === 0) {
-                return formatToolResult({
-                    found: false,
-                    message: args.policyDocId
-                        ? `No policy document found with ID: ${args.policyDocId}`
-                        : `No policy document found matching: ${args.query}`,
-                });
-            }
-            const policyDoc = policyDocs[0];
-            const profile = {
-                policyDocument: policyDoc,
-                matchCount: policyDocs.length,
-            };
-            // Extract structural link IDs
-            const publicationIds = Array.isArray(policyDoc.publication_ids)
-                ? policyDoc.publication_ids
-                : undefined;
-            // Step 2: Fetch linked publications
-            if (args.includeLinkedPublications !== false &&
-                publicationIds &&
-                publicationIds.length > 0) {
-                const pubSlice = publicationIds.slice(0, args.publicationLimit);
-                const pubDsl = client
-                    .createQueryBuilder()
-                    .search("publications")
-                    .whereIn("id", pubSlice)
-                    .fields([
-                    "id",
-                    "title",
-                    "doi",
-                    "year",
-                    "times_cited",
-                    "journal",
-                    "authors",
-                    "research_orgs",
-                    "funders",
-                    "supporting_grant_ids",
-                ])
-                    .limit(args.publicationLimit)
-                    .build();
-                const pubResponse = await client.rawQuery(pubDsl);
-                const publications = asArray(pubResponse.publications);
-                profile.linkedPublications = {
-                    totalLinked: publicationIds.length,
-                    returnedCount: publications.length,
-                    items: publications,
-                };
-                // Second-wave: fetch grants behind the publications
-                const allGrantIds = new Set();
-                for (const pub of publications) {
-                    if (Array.isArray(pub.supporting_grant_ids)) {
-                        for (const gid of pub.supporting_grant_ids) {
-                            if (typeof gid === "string") {
-                                allGrantIds.add(gid);
-                            }
-                        }
-                    }
-                }
-                if (allGrantIds.size > 0) {
-                    const grantIds = [...allGrantIds].slice(0, 50);
-                    const grantDsl = client
-                        .createQueryBuilder()
-                        .search("grants")
-                        .whereIn("id", grantIds)
-                        .fields(["id", "title", "funding_usd", "funder_org_name", "start_year"])
-                        .limit(50)
-                        .build();
-                    const grantResponse = await client.rawQuery(grantDsl);
-                    const grants = asArray(grantResponse.grants);
-                    profile.supportingGrants = {
-                        totalLinked: allGrantIds.size,
-                        returnedCount: grants.length,
-                        items: grants,
-                    };
-                }
-            }
-            return formatToolResult({
-                found: true,
-                profile,
-            });
-        }
-        catch (error) {
-            return formatErrorResult(error);
-        }
-    });
-}
-//# sourceMappingURL=policy-profile.js.map

package/dist/mcp/tools/policy-profile.js.map

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package/dist/mcp/tools/profile.d.ts

@@ -1,14 +0,0 @@
-/**
- * Profile tools for the MCP server.
- * Provides researcher and organization profile aggregation.
- * @module mcp/tools/profile
- */
-import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
-import type { DimensionsClient } from "../../dsl/index.js";
-/**
- * Registers all profile tools with the MCP server.
- * @param server - MCP server instance
- * @param client - Dimensions client instance
- */
-export declare function registerProfileTools(server: McpServer, client: DimensionsClient): void;
-//# sourceMappingURL=profile.d.ts.map

package/dist/mcp/tools/profile.d.ts.map

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package/dist/mcp/tools/profile.js

@@ -1,349 +0,0 @@
-/**
- * Profile tools for the MCP server.
- * Provides researcher and organization profile aggregation.
- * @module mcp/tools/profile
- */
-import { ErrorCode, McpError } from "@modelcontextprotocol/sdk/types.js";
-import { z } from "zod";
-import { asArray, formatErrorResult, formatToolResult, READ_ONLY_API_ANNOTATIONS, } from "../utils.js";
-/**
- * Registers all profile tools with the MCP server.
- * @param server - MCP server instance
- * @param client - Dimensions client instance
- */
-export function registerProfileTools(server, client) {
-    // Author/Researcher Profile
-    server.registerTool("author_profile", {
-        description: "Get a comprehensive profile for a researcher including their publications, grants, and institutional affiliations. Search by name or ORCID.",
-        inputSchema: {
-            researcherId: z.string().optional().describe("Dimensions researcher ID (if known)"),
-            orcid: z.string().optional().describe("ORCID identifier (e.g., '0000-0001-2345-6789')"),
-            name: z
-                .string()
-                .optional()
-                .describe("Researcher name to search for (e.g., 'Jennifer Doudna')"),
-            includePublications: z
-                .boolean()
-                .default(true)
-                .describe("Include recent publications in profile"),
-            includeGrants: z.boolean().default(true).describe("Include grants in profile"),
-            publicationLimit: z
-                .number()
-                .int()
-                .min(1)
-                .max(100)
-                .default(20)
-                .describe("Max publications to return"),
-            grantLimit: z.number().int().min(1).max(100).default(10).describe("Max grants to return"),
-        },
-        outputSchema: {
-            found: z.boolean().describe("Whether the researcher was found"),
-            profile: z
-                .record(z.string(), z.unknown())
-                .optional()
-                .describe("Aggregated researcher profile"),
-            message: z.string().optional().describe("Message when not found"),
-        },
-        annotations: READ_ONLY_API_ANNOTATIONS,
-    }, async (args) => {
-        // Validate that at least one identifier is provided
-        if (!args.researcherId && !args.orcid && !args.name) {
-            throw new McpError(ErrorCode.InvalidParams, "Must provide at least one of: researcherId, orcid, or name");
-        }
-        try {
-            // Step 1: Find the researcher
-            let researcherDsl;
-            if (args.researcherId) {
-                researcherDsl = client
-                    .createQueryBuilder()
-                    .search("researchers")
-                    .where("id", "=", args.researcherId)
-                    .limit(1)
-                    .build();
-            }
-            else if (args.orcid) {
-                researcherDsl = client
-                    .createQueryBuilder()
-                    .search("researchers")
-                    .where("orcid_id", "=", args.orcid)
-                    .limit(1)
-                    .build();
-            }
-            else {
-                const name = args.name;
-                if (!name) {
-                    throw new McpError(ErrorCode.InvalidParams, "Must provide at least one of: researcherId, orcid, or name");
-                }
-                researcherDsl = client
-                    .createQueryBuilder()
-                    .search("researchers")
-                    .for(name)
-                    .limit(5)
-                    .build();
-            }
-            const researcherResponse = await client.rawQuery(researcherDsl);
-            const researchers = asArray(researcherResponse.researchers);
-            if (researchers.length === 0) {
-                return formatToolResult({
-                    found: false,
-                    message: args.name
-                        ? `No researcher found matching: ${args.name}`
-                        : `No researcher found with provided identifier`,
-                });
-            }
-            // Use the first/best match
-            const researcher = researchers[0];
-            if (typeof researcher.id !== "string") {
-                return formatErrorResult(new Error("API returned researcher record without a valid id field"));
-            }
-            const researcherId = researcher.id;
-            const profile = {
-                researcher,
-                matchCount: researchers.length,
-            };
-            // Steps 2 & 3: Get publications and grants concurrently
-            const queries = [];
-            if (args.includePublications) {
-                queries.push((async () => {
-                    const pubDsl = client
-                        .createQueryBuilder()
-                        .search("publications")
-                        .where("researchers.id", "=", researcherId)
-                        .fields(["id", "title", "doi", "year", "times_cited", "journal", "type"])
-                        .sort("year", "desc")
-                        .limit(args.publicationLimit)
-                        .build();
-                    const pubResponse = await client.rawQuery(pubDsl);
-                    const publications = asArray(pubResponse.publications);
-                    profile.publications = {
-                        totalCount: pubResponse._stats?.total_count ?? publications.length,
-                        returnedCount: publications.length,
-                        items: publications,
-                    };
-                })());
-            }
-            if (args.includeGrants) {
-                queries.push((async () => {
-                    const grantDsl = client
-                        .createQueryBuilder()
-                        .search("grants")
-                        .where("researchers.id", "=", researcherId)
-                        .fields(["id", "title", "funding_usd", "funder_org_name", "start_year"])
-                        .sort("start_year", "desc")
-                        .limit(args.grantLimit)
-                        .build();
-                    const grantResponse = await client.rawQuery(grantDsl);
-                    const grants = asArray(grantResponse.grants);
-                    profile.grants = {
-                        totalCount: grantResponse._stats?.total_count ?? grants.length,
-                        returnedCount: grants.length,
-                        items: grants,
-                    };
-                })());
-            }
-            await Promise.all(queries);
-            return formatToolResult({
-                found: true,
-                profile,
-            });
-        }
-        catch (error) {
-            return formatErrorResult(error);
-        }
-    });
-    // Organization Profile
-    server.registerTool("org_profile", {
-        description: "Get a comprehensive profile for a research organization including publication output, funding received, and top researchers. " +
-            "Prefer organizationId (GRID id) when known — common names can match multiple organizations.",
-        inputSchema: {
-            organizationId: z
-                .string()
-                .optional()
-                .describe("Dimensions organization GRID id (preferred, e.g. grid.168010.e for Stanford University)"),
-            name: z
-                .string()
-                .optional()
-                .describe("Organization name to search for (e.g., 'Stanford University', 'MIT')"),
-            includePublications: z.boolean().default(true).describe("Include recent publications"),
-            includeGrants: z.boolean().default(true).describe("Include grants received"),
-            includeTopResearchers: z
-                .boolean()
-                .default(true)
-                .describe("Include top researchers by publication count"),
-            publicationLimit: z
-                .number()
-                .int()
-                .min(1)
-                .max(100)
-                .default(20)
-                .describe("Max publications to return"),
-            grantLimit: z.number().int().min(1).max(100).default(10).describe("Max grants to return"),
-            researcherLimit: z
-                .number()
-                .int()
-                .min(1)
-                .max(50)
-                .default(10)
-                .describe("Max researchers to return"),
-        },
-        outputSchema: {
-            found: z.boolean().describe("Whether the organization was found"),
-            ambiguous: z
-                .boolean()
-                .optional()
-                .describe("True when name search matched multiple organizations"),
-            matchCount: z.number().optional().describe("Number of name matches returned"),
-            candidates: z
-                .array(z.record(z.string(), z.unknown()))
-                .optional()
-                .describe("Matching organizations when ambiguous (id and name)"),
-            profile: z
-                .record(z.string(), z.unknown())
-                .optional()
-                .describe("Aggregated organization profile"),
-            message: z.string().optional().describe("Message when not found or ambiguous"),
-        },
-        annotations: READ_ONLY_API_ANNOTATIONS,
-    }, async (args) => {
-        // Validate that at least one identifier is provided
-        if (!args.organizationId && !args.name) {
-            throw new McpError(ErrorCode.InvalidParams, "Must provide either organizationId or name");
-        }
-        try {
-            // Step 1: Find the organization
-            let orgDsl;
-            if (args.organizationId) {
-                orgDsl = client
-                    .createQueryBuilder()
-                    .search("organizations")
-                    .where("id", "=", args.organizationId)
-                    .limit(1)
-                    .build();
-            }
-            else {
-                const name = args.name;
-                if (!name) {
-                    throw new McpError(ErrorCode.InvalidParams, "Must provide either organizationId or name");
-                }
-                orgDsl = client.createQueryBuilder().search("organizations").for(name).limit(5).build();
-            }
-            const orgResponse = await client.rawQuery(orgDsl);
-            const organizations = asArray(orgResponse.organizations);
-            if (organizations.length === 0) {
-                return formatToolResult({
-                    found: false,
-                    message: args.name
-                        ? `No organization found matching: ${args.name}`
-                        : `No organization found with provided ID`,
-                });
-            }
-            if (!args.organizationId && organizations.length > 1) {
-                const candidates = organizations.map((org) => ({
-                    id: org.id,
-                    name: org.name,
-                }));
-                return formatToolResult({
-                    found: false,
-                    ambiguous: true,
-                    matchCount: organizations.length,
-                    candidates,
-                    message: `Name "${args.name}" matched ${organizations.length} organizations. ` +
-                        "Pass organizationId (GRID id) to disambiguate.",
-                });
-            }
-            const organization = organizations[0];
-            if (typeof organization.id !== "string") {
-                return formatErrorResult(new Error("API returned organization record without a valid id field"));
-            }
-            const orgId = organization.id;
-            const profile = {
-                organization,
-                matchCount: organizations.length,
-            };
-            // Steps 2, 3 & 4: Get publications, grants, and top researchers concurrently
-            const orgQueries = [];
-            if (args.includePublications) {
-                orgQueries.push((async () => {
-                    const pubDsl = client
-                        .createQueryBuilder()
-                        .search("publications")
-                        .where("research_orgs.id", "=", orgId)
-                        .fields(["id", "title", "doi", "year", "times_cited", "authors"])
-                        .sort("year", "desc")
-                        .limit(args.publicationLimit)
-                        .build();
-                    const pubResponse = await client.rawQuery(pubDsl);
-                    const publications = asArray(pubResponse.publications);
-                    profile.publications = {
-                        totalCount: pubResponse._stats?.total_count ?? publications.length,
-                        returnedCount: publications.length,
-                        items: publications,
-                    };
-                })());
-            }
-            if (args.includeGrants) {
-                orgQueries.push((async () => {
-                    const grantDsl = client
-                        .createQueryBuilder()
-                        .search("grants")
-                        .where("research_orgs.id", "=", orgId)
-                        .fields(["id", "title", "funding_usd", "funder_org_name", "start_year"])
-                        .sort("start_year", "desc")
-                        .limit(args.grantLimit)
-                        .build();
-                    const grantResponse = await client.rawQuery(grantDsl);
-                    const grants = asArray(grantResponse.grants);
-                    // Calculate total funding if available
-                    let totalFunding = 0;
-                    for (const grant of grants) {
-                        const funding = typeof grant.funding_usd === "number" ? grant.funding_usd : 0;
-                        if (funding > 0) {
-                            totalFunding += funding;
-                        }
-                    }
-                    profile.grants = {
-                        totalCount: grantResponse._stats?.total_count ?? grants.length,
-                        returnedCount: grants.length,
-                        totalFundingUsd: totalFunding,
-                        items: grants,
-                    };
-                })());
-            }
-            if (args.includeTopResearchers) {
-                orgQueries.push((async () => {
-                    const resDsl = client
-                        .createQueryBuilder()
-                        .search("researchers")
-                        .where("research_orgs.id", "=", orgId)
-                        .fields([
-                        "id",
-                        "first_name",
-                        "last_name",
-                        "orcid_id",
-                        "total_publications",
-                        "total_grants",
-                    ])
-                        .sort("total_publications", "desc")
-                        .limit(args.researcherLimit)
-                        .build();
-                    const resResponse = await client.rawQuery(resDsl);
-                    const researchers = asArray(resResponse.researchers);
-                    profile.topResearchers = {
-                        totalCount: resResponse._stats?.total_count ?? researchers.length,
-                        returnedCount: researchers.length,
-                        items: researchers,
-                    };
-                })());
-            }
-            await Promise.all(orgQueries);
-            return formatToolResult({
-                found: true,
-                profile,
-            });
-        }
-        catch (error) {
-            return formatErrorResult(error);
-        }
-    });
-}
-//# sourceMappingURL=profile.js.map

package/dist/mcp/tools/profile.js.map

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