@digital-science-dsl/dimensions-analytics-mcp 0.5.3 → 1.0.0

package/dist/tools/analytics.js

@@ -1,381 +0,0 @@
-/**
- * Analytics tools for the MCP server.
- * Provides tools for facet distribution analysis, metric aggregation, and time-series trends.
- * @module mcp/tools/analytics
- */
-import { ExtendedWhereFilterSchema, parseFacetResponse, SUPPORTED_CURRENCIES, } from "@digital-science/dimensions-dsl";
-import { ErrorCode, McpError } from "@modelcontextprotocol/sdk/types.js";
-import { z } from "zod";
-import { resolveFacetFieldName, withFieldAliases } from "../middleware/field-aliases.js";
-import { formatErrorResult, formatToolResult, READ_ONLY_API_ANNOTATIONS } from "../utils.js";
-import { applyAnalyticsFilters } from "./analytics-filters.js";
-/** API may return year→value map or an array; normalize for MCP output schemas. */
-function normalizeYearSeries(data, valueKey) {
-    if (Array.isArray(data)) {
-        return data;
-    }
-    if (data && typeof data === "object") {
-        return Object.entries(data)
-            .map(([year, value]) => ({ year: Number(year), [valueKey]: value }))
-            .sort((a, b) => a.year - b.year);
-    }
-    return [];
-}
-/**
- * Zod enum of structured entity types from the loaded schema.
- * @param schemaStore - Loaded describe schema
- * @returns Entity type enum for tool input schemas
- */
-function entityTypeEnum(schemaStore) {
-    const types = schemaStore.structuredEntityTypes();
-    if (types.length === 0) {
-        return z.string().min(1).describe("Entity type (no sources loaded in schema)");
-    }
-    return z
-        .enum(types)
-        .describe("The entity type to analyze (e.g., 'publications', 'grants', 'patents')");
-}
-/**
- * Validates a facet field against describe schema.
- * @param schemaStore - Loaded schema
- * @param entity - Entity type
- * @param facetField - Facet field name
- */
-function assertFacetField(schemaStore, entity, facetField) {
-    const valid = schemaStore.facetFields(entity);
-    if (!valid.includes(facetField)) {
-        throw new McpError(ErrorCode.InvalidParams, `Invalid facet field "${facetField}" for entity "${entity}". Valid fields: ${valid.join(", ") || "(none)"}`);
-    }
-}
-/**
- * Validates aggregation indicators against describe schema.
- * @param schemaStore - Loaded schema
- * @param entity - Entity type
- * @param indicators - Metric names
- */
-function assertIndicators(schemaStore, entity, indicators) {
-    const valid = new Set(schemaStore.metrics(entity));
-    const invalid = indicators.filter((name) => !valid.has(name));
-    if (invalid.length > 0) {
-        throw new McpError(ErrorCode.InvalidParams, `Invalid indicator(s) for entity "${entity}": ${invalid.join(", ")}. Valid metrics: ${[...valid].join(", ") || "(none)"}`);
-    }
-}
-/**
- * Builds facet field hint text from describe schema.
- * @param schemaStore - Loaded schema
- * @returns Description fragment
- */
-function facetFieldsDescription(schemaStore) {
-    return schemaStore
-        .structuredEntityTypes()
-        .map((entity) => `${entity}: ${schemaStore.facetFieldsHint(entity)}`)
-        .join(". ");
-}
-/**
- * Builds metrics hint text from describe schema.
- * @param schemaStore - Loaded schema
- * @returns Description fragment
- */
-function metricsDescription(schemaStore) {
-    return schemaStore
-        .structuredEntityTypes()
-        .map((entity) => `${entity}: ${schemaStore.metricsHint(entity)}`)
-        .join(". ");
-}
-/**
- * Registers all analytics tools with the MCP server.
- * @param server - MCP server instance
- * @param client - Dimensions client instance
- * @param schemaStore - Loaded describe schema
- */
-export function registerAnalyticsTools(server, client, schemaStore) {
-    const facetHint = facetFieldsDescription(schemaStore);
-    const metricsHint = metricsDescription(schemaStore);
-    const entityTypeSchema = entityTypeEnum(schemaStore);
-    // Facet Query
-    server.registerTool("facet_query", {
-        description: "Distribution analysis across entity dimensions. Returns facet buckets showing how records " +
-            "are distributed across a categorical field. Example: 'What journals publish the most CRISPR research?'",
-        inputSchema: {
-            entityType: entityTypeSchema,
-            facetField: z
-                .string()
-                .min(1)
-                .describe(`Field to facet on. Valid fields by entity: ${facetHint}`),
-            query: z
-                .string()
-                .min(1)
-                .optional()
-                .describe("Optional search query to filter records before faceting (e.g., 'CRISPR gene editing')"),
-            limit: z
-                .number()
-                .int()
-                .min(1)
-                .max(100)
-                .default(20)
-                .describe("Maximum number of facet buckets to return (default 20, max 100)"),
-            yearFrom: z
-                .number()
-                .int()
-                .optional()
-                .describe("Filter records from this year (publications: year; grants: start_year)"),
-            yearTo: z
-                .number()
-                .int()
-                .optional()
-                .describe("Filter records up to this year (publications: year; grants: start_year)"),
-            filters: z
-                .array(ExtendedWhereFilterSchema)
-                .optional()
-                .describe("Additional where-clause filters before faceting"),
-        },
-        outputSchema: {
-            entityType: z.string().describe("Entity type analyzed"),
-            facetField: z.string().describe("Field faceted on"),
-            totalBuckets: z.number().describe("Number of facet buckets returned"),
-            buckets: z.array(z.record(z.string(), z.unknown())).describe("Facet bucket distribution"),
-        },
-        annotations: READ_ONLY_API_ANNOTATIONS,
-    }, withFieldAliases({
-        entitySource: { kind: "dynamic", argName: "entityType" },
-        filterArrayArgs: ["filters"],
-    }, async (args) => {
-        try {
-            const facetField = resolveFacetFieldName(args.entityType, args.facetField);
-            assertFacetField(schemaStore, args.entityType, facetField);
-            const builder = client.createQueryBuilder().search(args.entityType);
-            if (args.query) {
-                builder.for(args.query);
-            }
-            applyAnalyticsFilters(builder, args.entityType, args);
-            builder.returnFacet(facetField, { limit: args.limit });
-            const response = (await client.rawQuery(builder.build()));
-            const facetConfigs = {
-                [facetField]: {},
-            };
-            const parsed = parseFacetResponse(response, args.entityType, facetConfigs, {
-                includeRaw: false,
-            });
-            const facets = parsed.facets[facetField];
-            return formatToolResult({
-                entityType: args.entityType,
-                facetField,
-                totalBuckets: facets.buckets.length,
-                buckets: facets.buckets,
-            });
-        }
-        catch (error) {
-            return formatErrorResult(error);
-        }
-    }));
-    // Aggregate Query
-    server.registerTool("aggregate_query", {
-        description: "Metric aggregation on facet buckets. Returns facet buckets enriched with aggregated indicator " +
-            "values. Example: 'Which funders have the highest average citation ratio?'",
-        inputSchema: {
-            entityType: entityTypeSchema,
-            facetField: z
-                .string()
-                .min(1)
-                .describe(`Field to facet on. Valid fields by entity: ${facetHint}`),
-            indicators: z
-                .array(z.string().min(1))
-                .min(1)
-                .describe(`Aggregation indicators per bucket. Valid metrics by entity: ${metricsHint}`),
-            query: z
-                .string()
-                .min(1)
-                .optional()
-                .describe("Optional search query to filter records before aggregating"),
-            sortBy: z
-                .string()
-                .optional()
-                .describe("Field to sort buckets by (must be 'count' or one of the specified indicators)"),
-            sortOrder: z.enum(["asc", "desc"]).optional().describe("Sort direction — 'asc' or 'desc'"),
-            limit: z
-                .number()
-                .int()
-                .min(1)
-                .default(20)
-                .describe("Maximum number of facet buckets to return (default 20)"),
-            yearFrom: z
-                .number()
-                .int()
-                .optional()
-                .describe("Filter records from this year (publications: year; grants: start_year)"),
-            yearTo: z
-                .number()
-                .int()
-                .optional()
-                .describe("Filter records up to this year (publications: year; grants: start_year)"),
-            filters: z
-                .array(ExtendedWhereFilterSchema)
-                .optional()
-                .describe("Additional where-clause filters before aggregating"),
-        },
-        outputSchema: {
-            entityType: z.string().describe("Entity type analyzed"),
-            facetField: z.string().describe("Field faceted on"),
-            indicators: z.array(z.string()).describe("Aggregation indicators computed"),
-            totalBuckets: z.number().describe("Number of facet buckets returned"),
-            buckets: z
-                .array(z.record(z.string(), z.unknown()))
-                .describe("Facet buckets with aggregated values"),
-        },
-        annotations: READ_ONLY_API_ANNOTATIONS,
-    }, withFieldAliases({
-        entitySource: { kind: "dynamic", argName: "entityType" },
-        fieldStringArgs: ["sortBy"],
-        fieldArrayArgs: ["indicators"],
-        filterArrayArgs: ["filters"],
-    }, async (args) => {
-        try {
-            const facetField = resolveFacetFieldName(args.entityType, args.facetField);
-            assertFacetField(schemaStore, args.entityType, facetField);
-            assertIndicators(schemaStore, args.entityType, args.indicators);
-            const builder = client.createQueryBuilder().search(args.entityType);
-            if (args.query) {
-                builder.for(args.query);
-            }
-            applyAnalyticsFilters(builder, args.entityType, args);
-            builder.returnAggregate(facetField, args.indicators, {
-                sortBy: args.sortBy,
-                sortOrder: args.sortOrder,
-                limit: args.limit,
-            });
-            const response = (await client.rawQuery(builder.build()));
-            const facetConfigs = {
-                [facetField]: { indicators: args.indicators },
-            };
-            const parsed = parseFacetResponse(response, args.entityType, facetConfigs, {
-                includeRaw: false,
-            });
-            const facets = parsed.facets[facetField];
-            return formatToolResult({
-                entityType: args.entityType,
-                facetField,
-                indicators: args.indicators,
-                totalBuckets: facets.buckets.length,
-                buckets: facets.buckets,
-            });
-        }
-        catch (error) {
-            return formatErrorResult(error);
-        }
-    }));
-    // Citation Trend
-    server.registerTool("citation_trend", {
-        description: "Year-by-year citation counts for a topic. Returns annual citation totals for publications " +
-            "matching the query over the specified year range.",
-        inputSchema: {
-            query: z
-                .string()
-                .min(1)
-                .describe("Search query to identify publications (e.g., 'CRISPR gene editing')"),
-            startYear: z
-                .number()
-                .int()
-                .min(1900)
-                .max(2100)
-                .describe("First year of the time range (inclusive)"),
-            endYear: z
-                .number()
-                .int()
-                .min(1900)
-                .max(2100)
-                .describe("Last year of the time range (inclusive)"),
-        },
-        outputSchema: {
-            query: z.string().describe("Search query used"),
-            startYear: z.number().describe("First year of range"),
-            endYear: z.number().describe("Last year of range"),
-            citationsPerYear: z
-                .array(z.record(z.string(), z.unknown()))
-                .describe("Annual citation totals"),
-        },
-        annotations: READ_ONLY_API_ANNOTATIONS,
-    }, async (args) => {
-        try {
-            if (args.startYear > args.endYear) {
-                throw new McpError(ErrorCode.InvalidParams, `startYear (${args.startYear}) must be ≤ endYear (${args.endYear})`);
-            }
-            const dsl = client
-                .createQueryBuilder()
-                .search("publications")
-                .for(args.query)
-                .returnCitationsPerYear(args.startYear, args.endYear)
-                .build();
-            const response = await client.rawQuery(dsl);
-            return formatToolResult({
-                query: args.query,
-                startYear: args.startYear,
-                endYear: args.endYear,
-                citationsPerYear: normalizeYearSeries(response.citations_per_year, "count"),
-            });
-        }
-        catch (error) {
-            return formatErrorResult(error);
-        }
-    });
-    // Funding Trend
-    server.registerTool("funding_trend", {
-        description: "Year-by-year funding totals for a topic. Returns annual grant funding amounts for grants " +
-            "matching the query over the specified year range.",
-        inputSchema: {
-            query: z
-                .string()
-                .min(1)
-                .describe("Search query to identify grants (e.g., 'cancer immunotherapy')"),
-            startYear: z
-                .number()
-                .int()
-                .min(1900)
-                .max(2100)
-                .describe("First year of the time range (inclusive)"),
-            endYear: z
-                .number()
-                .int()
-                .min(1900)
-                .max(2100)
-                .describe("Last year of the time range (inclusive)"),
-            currency: z
-                .enum(SUPPORTED_CURRENCIES)
-                .default("USD")
-                .describe(`Currency for funding amounts (default USD). Supported: ${SUPPORTED_CURRENCIES.join(", ")}.`),
-        },
-        outputSchema: {
-            query: z.string().describe("Search query used"),
-            startYear: z.number().describe("First year of range"),
-            endYear: z.number().describe("Last year of range"),
-            currency: z.string().describe("Currency of funding amounts"),
-            fundingPerYear: z
-                .array(z.record(z.string(), z.unknown()))
-                .describe("Annual funding totals"),
-        },
-        annotations: READ_ONLY_API_ANNOTATIONS,
-    }, async (args) => {
-        try {
-            if (args.startYear > args.endYear) {
-                throw new McpError(ErrorCode.InvalidParams, `startYear (${args.startYear}) must be ≤ endYear (${args.endYear})`);
-            }
-            const dsl = client
-                .createQueryBuilder()
-                .search("grants")
-                .for(args.query)
-                .returnFundingPerYear(args.startYear, args.endYear, args.currency)
-                .build();
-            const response = await client.rawQuery(dsl);
-            return formatToolResult({
-                query: args.query,
-                startYear: args.startYear,
-                endYear: args.endYear,
-                currency: args.currency,
-                fundingPerYear: normalizeYearSeries(response.funding_per_year, "funding"),
-            });
-        }
-        catch (error) {
-            return formatErrorResult(error);
-        }
-    });
-}
-//# sourceMappingURL=analytics.js.map

package/dist/tools/analytics.js.map

@@ -1 +0,0 @@
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package/dist/tools/concept-profile.d.ts

@@ -1,14 +0,0 @@
-/**
- * Concept profile tool for the MCP server.
- * Provides multi-dimensional concept profiling across entity types via the Dimensions DSL.
- * @module mcp/tools/concept-profile
- */
-import type { DimensionsClient } from "@digital-science/dimensions-dsl";
-import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
-/**
- * Registers the concept_profile tool with the MCP server.
- * @param server - MCP server instance
- * @param client - Dimensions client instance
- */
-export declare function registerConceptProfileTools(server: McpServer, client: DimensionsClient): void;
-//# sourceMappingURL=concept-profile.d.ts.map

package/dist/tools/concept-profile.d.ts.map

@@ -1 +0,0 @@
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package/dist/tools/concept-profile.js

@@ -1,130 +0,0 @@
-/**
- * Concept profile tool for the MCP server.
- * Provides multi-dimensional concept profiling across entity types via the Dimensions DSL.
- * @module mcp/tools/concept-profile
- */
-import { z } from "zod";
-import { asArray, formatErrorResult, formatToolResult, READ_ONLY_API_ANNOTATIONS, } from "../utils.js";
-/** Entity types used for entity footprint counts. */
-const FOOTPRINT_ENTITIES = [
-    "publications",
-    "grants",
-    "patents",
-    "clinical_trials",
-    "datasets",
-    "policy_documents",
-];
-/**
- * Registers the concept_profile tool with the MCP server.
- * @param server - MCP server instance
- * @param client - Dimensions client instance
- */
-export function registerConceptProfileTools(server, client) {
-    server.registerTool("concept_profile", {
-        description: "Build a multi-dimensional profile for a research concept. Returns publication analytics (year trends, top orgs, journals, funders, field classification) and entity footprint across 6 entity types.",
-        inputSchema: {
-            concept: z.string().describe("The concept to profile (e.g., 'CRISPR', 'machine learning')"),
-            includeAnalytics: z
-                .boolean()
-                .default(true)
-                .describe("Include DSL facet analytics (year trends, top orgs, journals, funders, fields)"),
-            includeEntityFootprint: z
-                .boolean()
-                .default(true)
-                .describe("Include cross-entity type record counts"),
-            facetLimit: z
-                .number()
-                .int()
-                .min(1)
-                .max(50)
-                .default(10)
-                .describe("Max buckets per facet in analytics"),
-        },
-        outputSchema: {
-            found: z.boolean().describe("Whether results were found for the concept"),
-            concept: z.string().optional().describe("The profiled concept"),
-            profile: z
-                .record(z.string(), z.unknown())
-                .optional()
-                .describe("Multi-dimensional concept profile"),
-        },
-        annotations: READ_ONLY_API_ANNOTATIONS,
-    }, async (args) => {
-        try {
-            const profile = {};
-            const phases = [];
-            // Phase 1: DSL facet analytics
-            if (args.includeAnalytics !== false) {
-                phases.push((async () => {
-                    const facetFields = ["year", "research_orgs", "journal", "funders", "category_for"];
-                    const facetResults = await Promise.all(facetFields.map(async (field) => {
-                        const dsl = client
-                            .createQueryBuilder()
-                            .search("publications")
-                            .for(args.concept)
-                            .returnFacet(field, { limit: field === "year" ? 50 : args.facetLimit })
-                            .limit(0)
-                            .build();
-                        const response = await client.rawQuery(dsl);
-                        return { field, data: response };
-                    }));
-                    const analytics = {};
-                    for (const { field, data } of facetResults) {
-                        const buckets = asArray(data[field]);
-                        switch (field) {
-                            case "year":
-                                analytics.yearTrend = buckets;
-                                break;
-                            case "research_orgs":
-                                analytics.topOrgs = buckets;
-                                break;
-                            case "journal":
-                                analytics.topJournals = buckets;
-                                break;
-                            case "funders":
-                                analytics.topFunders = buckets;
-                                break;
-                            case "category_for":
-                                analytics.fieldClassification = buckets;
-                                break;
-                        }
-                    }
-                    profile.analytics = analytics;
-                })());
-            }
-            // Phase 2: DSL entity footprint
-            if (args.includeEntityFootprint !== false) {
-                phases.push((async () => {
-                    const counts = await Promise.all(FOOTPRINT_ENTITIES.map(async (entityType) => {
-                        const dsl = client
-                            .createQueryBuilder()
-                            .search(entityType)
-                            .for(args.concept)
-                            .limit(1)
-                            .build();
-                        const response = await client.rawQuery(dsl);
-                        const total = typeof response._stats?.total_count === "number"
-                            ? response._stats.total_count
-                            : 0;
-                        return { entityType, count: total };
-                    }));
-                    const entityFootprint = {};
-                    for (const { entityType, count } of counts) {
-                        entityFootprint[entityType] = count;
-                    }
-                    profile.entityFootprint = entityFootprint;
-                })());
-            }
-            await Promise.all(phases);
-            return formatToolResult({
-                found: true,
-                concept: args.concept,
-                profile,
-            });
-        }
-        catch (error) {
-            return formatErrorResult(error);
-        }
-    });
-}
-//# sourceMappingURL=concept-profile.js.map

package/dist/tools/concept-profile.js.map

@@ -1 +0,0 @@
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package/dist/tools/dataset-profile.d.ts

@@ -1,15 +0,0 @@
-/**
- * Dataset profile tool for the MCP server.
- * Provides deep profiling of Dimensions datasets including structural links
- * to associated publications and grants.
- * @module mcp/tools/dataset-profile
- */
-import type { DimensionsClient } from "@digital-science/dimensions-dsl";
-import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
-/**
- * Registers the dataset_profile tool with the MCP server.
- * @param server - MCP server instance
- * @param client - Dimensions client instance
- */
-export declare function registerDatasetProfileTools(server: McpServer, client: DimensionsClient): void;
-//# sourceMappingURL=dataset-profile.d.ts.map

package/dist/tools/dataset-profile.d.ts.map

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