@devflow-tools/knowledge-engine 0.16.27 → 0.16.29

package/dist/knowledge-store.js

@@ -5,7 +5,7 @@ import { existsSync, mkdirSync } from 'node:fs';
 import { resolveKnowledgeTitle } from './result-quality.js';
 import { KNOWLEDGE_CHUNK_POLICY_VERSION } from './markdown-converter.js';
 import { createHash } from 'node:crypto';
-import { extractApiIdentifiers, inferKnowledgeChunkKind } from './markdown-converter.js';
+import { extractApiIdentifiers, extractCodeBlocks, inferKnowledgeChunkKind } from './markdown-converter.js';
 const KNOWLEDGE_SCHEMA = `
 CREATE TABLE IF NOT EXISTS knowledge_docs (
   id TEXT PRIMARY KEY,
@@ -58,6 +58,111 @@ CREATE TABLE IF NOT EXISTS knowledge_source_readiness (
   updated_at INTEGER NOT NULL
 );
 `;
+const COMPILED_KNOWLEDGE_SCHEMA = `
+CREATE TABLE IF NOT EXISTS knowledge_project_profiles (
+  project_root TEXT PRIMARY KEY,
+  profile_hash TEXT NOT NULL,
+  profile_json TEXT NOT NULL,
+  generated_at INTEGER NOT NULL
+);
+
+CREATE TABLE IF NOT EXISTS knowledge_source_schemas (
+  id TEXT PRIMARY KEY,
+  source_id TEXT NOT NULL,
+  source_kind TEXT NOT NULL,
+  authority TEXT NOT NULL,
+  schema_version INTEGER NOT NULL,
+  content_hash TEXT NOT NULL,
+  schema_json TEXT NOT NULL,
+  updated_at INTEGER NOT NULL
+);
+CREATE INDEX IF NOT EXISTS idx_knowledge_source_schemas_source
+  ON knowledge_source_schemas(source_id, schema_version DESC);
+
+CREATE TABLE IF NOT EXISTS knowledge_catalog_snapshots (
+  id TEXT PRIMARY KEY,
+  project_root TEXT NOT NULL,
+  profile_hash TEXT NOT NULL,
+  source_id TEXT NOT NULL,
+  schema_id TEXT NOT NULL,
+  content_hash TEXT NOT NULL,
+  entry_json TEXT NOT NULL,
+  status TEXT NOT NULL CHECK(status IN ('active', 'inactive')),
+  created_at INTEGER NOT NULL,
+  activated_at INTEGER,
+  UNIQUE(project_root, source_id, content_hash)
+);
+CREATE UNIQUE INDEX IF NOT EXISTS idx_knowledge_catalog_active_source
+  ON knowledge_catalog_snapshots(project_root, source_id) WHERE status = 'active';
+
+CREATE TABLE IF NOT EXISTS knowledge_pages (
+  id TEXT PRIMARY KEY,
+  project_root TEXT NOT NULL,
+  source_id TEXT NOT NULL,
+  source_schema_id TEXT NOT NULL,
+  title TEXT NOT NULL,
+  markdown TEXT NOT NULL,
+  frontmatter TEXT NOT NULL DEFAULT '{}',
+  entities TEXT NOT NULL DEFAULT '[]',
+  symbols TEXT NOT NULL DEFAULT '[]',
+  links TEXT NOT NULL DEFAULT '[]',
+  version TEXT,
+  content_hash TEXT NOT NULL,
+  provenance TEXT NOT NULL,
+  status TEXT NOT NULL DEFAULT 'active' CHECK(status IN ('staging', 'active', 'inactive', 'quarantined')),
+  compiled_at INTEGER NOT NULL
+);
+CREATE INDEX IF NOT EXISTS idx_knowledge_pages_source
+  ON knowledge_pages(project_root, source_id, status, content_hash);
+
+CREATE TABLE IF NOT EXISTS knowledge_entity_links (
+  page_id TEXT NOT NULL REFERENCES knowledge_pages(id) ON DELETE CASCADE,
+  chunk_id TEXT NOT NULL DEFAULT '',
+  entity TEXT NOT NULL,
+  normalized_entity TEXT NOT NULL,
+  PRIMARY KEY(page_id, chunk_id, normalized_entity)
+);
+CREATE INDEX IF NOT EXISTS idx_knowledge_entity_links_lookup
+  ON knowledge_entity_links(normalized_entity, page_id, chunk_id);
+
+CREATE TABLE IF NOT EXISTS knowledge_symbol_links (
+  page_id TEXT NOT NULL REFERENCES knowledge_pages(id) ON DELETE CASCADE,
+  chunk_id TEXT NOT NULL DEFAULT '',
+  symbol TEXT NOT NULL,
+  normalized_symbol TEXT NOT NULL,
+  PRIMARY KEY(page_id, chunk_id, normalized_symbol)
+);
+CREATE INDEX IF NOT EXISTS idx_knowledge_symbol_links_lookup
+  ON knowledge_symbol_links(normalized_symbol, page_id, chunk_id);
+
+CREATE TABLE IF NOT EXISTS knowledge_refresh_jobs (
+  id TEXT PRIMARY KEY,
+  project_root TEXT NOT NULL,
+  source_id TEXT NOT NULL,
+  input_content_hash TEXT NOT NULL,
+  previous_snapshot_id TEXT,
+  output_snapshot_id TEXT,
+  status TEXT NOT NULL CHECK(status IN ('pending', 'compiling', 'completed', 'failed')),
+  error TEXT,
+  created_at INTEGER NOT NULL,
+  updated_at INTEGER NOT NULL,
+  UNIQUE(project_root, source_id, input_content_hash)
+);
+CREATE INDEX IF NOT EXISTS idx_knowledge_refresh_jobs_source
+  ON knowledge_refresh_jobs(project_root, source_id, updated_at DESC);
+
+CREATE TABLE IF NOT EXISTS knowledge_coverage_gaps (
+  id TEXT PRIMARY KEY,
+  project_root TEXT NOT NULL,
+  source_id TEXT NOT NULL,
+  kind TEXT NOT NULL,
+  gap_json TEXT NOT NULL,
+  detected_at INTEGER NOT NULL,
+  resolved_at INTEGER
+);
+CREATE INDEX IF NOT EXISTS idx_knowledge_coverage_gaps_active
+  ON knowledge_coverage_gaps(project_root, source_id, resolved_at, detected_at DESC);
+`;
 const FTS_TRIGGERS = `
 CREATE TRIGGER IF NOT EXISTS kchunks_ai AFTER INSERT ON knowledge_chunks BEGIN
   INSERT INTO knowledge_fts(rowid, id, heading_path, content, code_blocks)
@@ -87,6 +192,7 @@ export class KnowledgeStore {
         sqliteVec.load(this.db);
         this.db.exec(KNOWLEDGE_SCHEMA);
         this.migrateQualitySchema();
+        this.migrateCompiledKnowledgeSchema();
         this.ensureTrigramFts();
         this.db.exec(FTS_TRIGGERS);
     }
@@ -106,6 +212,25 @@ export class KnowledgeStore {
         addChunkColumn('source_url', 'ALTER TABLE knowledge_chunks ADD COLUMN source_url TEXT');
         addChunkColumn('content_hash', "ALTER TABLE knowledge_chunks ADD COLUMN content_hash TEXT NOT NULL DEFAULT ''");
     }
+    migrateCompiledKnowledgeSchema() {
+        this.db.exec(COMPILED_KNOWLEDGE_SCHEMA);
+        const chunkColumns = this.db.pragma('table_info(knowledge_chunks)');
+        const add = (name, sql) => {
+            if (!chunkColumns.some(column => column.name === name))
+                this.db.exec(sql);
+        };
+        add('page_id', 'ALTER TABLE knowledge_chunks ADD COLUMN page_id TEXT');
+        add('project_root', "ALTER TABLE knowledge_chunks ADD COLUMN project_root TEXT NOT NULL DEFAULT ''");
+        add('heading_breadcrumbs', "ALTER TABLE knowledge_chunks ADD COLUMN heading_breadcrumbs TEXT NOT NULL DEFAULT '[]'");
+        add('embedding_text', "ALTER TABLE knowledge_chunks ADD COLUMN embedding_text TEXT NOT NULL DEFAULT ''");
+        add('original_start', 'ALTER TABLE knowledge_chunks ADD COLUMN original_start INTEGER');
+        add('original_end', 'ALTER TABLE knowledge_chunks ADD COLUMN original_end INTEGER');
+        add('entities', "ALTER TABLE knowledge_chunks ADD COLUMN entities TEXT NOT NULL DEFAULT '[]'");
+        add('symbols', "ALTER TABLE knowledge_chunks ADD COLUMN symbols TEXT NOT NULL DEFAULT '[]'");
+        add('links', "ALTER TABLE knowledge_chunks ADD COLUMN links TEXT NOT NULL DEFAULT '[]'");
+        add('oversized_atomic', 'ALTER TABLE knowledge_chunks ADD COLUMN oversized_atomic INTEGER NOT NULL DEFAULT 0');
+        add('provenance', "ALTER TABLE knowledge_chunks ADD COLUMN provenance TEXT NOT NULL DEFAULT '{}'");
+    }
     ensureTrigramFts() {
         const row = this.db.prepare("SELECT sql FROM sqlite_master WHERE type = 'table' AND name = 'knowledge_fts'").get();
         if (/tokenize\s*=\s*['\"]?trigram/i.test(row?.sql ?? ''))
@@ -469,6 +594,300 @@ export class KnowledgeStore {
             emptyTitleCount: emptyTitles.count,
         };
     }
+    upsertProjectProfile(profile) {
+        const existing = this.db.prepare('SELECT profile_hash FROM knowledge_project_profiles WHERE project_root = ?').get(profile.projectRoot);
+        if (existing?.profile_hash === profile.profileHash)
+            return false;
+        this.db.prepare(`
+      INSERT INTO knowledge_project_profiles (project_root, profile_hash, profile_json, generated_at)
+      VALUES (?, ?, ?, ?)
+      ON CONFLICT(project_root) DO UPDATE SET
+        profile_hash = excluded.profile_hash,
+        profile_json = excluded.profile_json,
+        generated_at = excluded.generated_at
+    `).run(profile.projectRoot, profile.profileHash, JSON.stringify(profile), profile.generatedAt);
+        return true;
+    }
+    getProjectProfile(projectRoot) {
+        const row = this.db.prepare('SELECT profile_json FROM knowledge_project_profiles WHERE project_root = ?').get(projectRoot);
+        return row ? JSON.parse(row.profile_json) : null;
+    }
+    upsertSourceSchema(schema, now = Date.now()) {
+        const existing = this.db.prepare('SELECT content_hash FROM knowledge_source_schemas WHERE id = ?').get(schema.id);
+        if (existing?.content_hash === schema.contentHash)
+            return false;
+        this.db.prepare(`
+      INSERT INTO knowledge_source_schemas
+        (id, source_id, source_kind, authority, schema_version, content_hash, schema_json, updated_at)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?)
+      ON CONFLICT(id) DO UPDATE SET
+        source_id = excluded.source_id,
+        source_kind = excluded.source_kind,
+        authority = excluded.authority,
+        schema_version = excluded.schema_version,
+        content_hash = excluded.content_hash,
+        schema_json = excluded.schema_json,
+        updated_at = excluded.updated_at
+    `).run(schema.id, schema.sourceId, schema.sourceKind, schema.authority, schema.schemaVersion, schema.contentHash, JSON.stringify(schema), now);
+        return true;
+    }
+    getSourceSchema(id) {
+        const row = this.db.prepare('SELECT schema_json FROM knowledge_source_schemas WHERE id = ?').get(id);
+        return row ? JSON.parse(row.schema_json) : null;
+    }
+    listSourceSchemas() {
+        return this.db.prepare('SELECT schema_json FROM knowledge_source_schemas ORDER BY source_id, schema_version DESC, id').all().map(row => JSON.parse(row.schema_json));
+    }
+    activateCatalogEntry(input) {
+        const activatedAt = input.activatedAt ?? Date.now();
+        const snapshotId = `catalog:${createHash('sha256').update([
+            input.projectRoot,
+            input.entry.sourceId,
+            input.entry.schemaId,
+            input.entry.contentHash,
+        ].join('\0')).digest('hex').slice(0, 32)}`;
+        return this.db.transaction(() => {
+            const existing = this.db.prepare(`
+        SELECT id, status, entry_json FROM knowledge_catalog_snapshots
+        WHERE project_root = ? AND source_id = ? AND content_hash = ?
+      `).get(input.projectRoot, input.entry.sourceId, input.entry.contentHash);
+            const active = this.db.prepare(`
+        SELECT id FROM knowledge_catalog_snapshots
+        WHERE project_root = ? AND source_id = ? AND status = 'active'
+      `).get(input.projectRoot, input.entry.sourceId);
+            if (existing?.status === 'active' && active?.id === existing.id) {
+                const entryJson = JSON.stringify(input.entry);
+                if (existing.entry_json !== entryJson) {
+                    this.db.prepare(`
+            UPDATE knowledge_catalog_snapshots
+            SET profile_hash = ?, schema_id = ?, entry_json = ?, activated_at = ?
+            WHERE id = ?
+          `).run(input.profileHash, input.entry.schemaId, entryJson, activatedAt, existing.id);
+                }
+                return { snapshotId: existing.id, changed: false };
+            }
+            this.db.prepare(`
+        UPDATE knowledge_catalog_snapshots SET status = 'inactive'
+        WHERE project_root = ? AND source_id = ? AND status = 'active'
+      `).run(input.projectRoot, input.entry.sourceId);
+            if (existing) {
+                this.db.prepare(`
+          UPDATE knowledge_catalog_snapshots
+          SET profile_hash = ?, schema_id = ?, entry_json = ?, status = 'active', activated_at = ?
+          WHERE id = ?
+        `).run(input.profileHash, input.entry.schemaId, JSON.stringify(input.entry), activatedAt, existing.id);
+                return { snapshotId: existing.id, changed: true };
+            }
+            this.db.prepare(`
+        INSERT INTO knowledge_catalog_snapshots
+          (id, project_root, profile_hash, source_id, schema_id, content_hash,
+           entry_json, status, created_at, activated_at)
+        VALUES (?, ?, ?, ?, ?, ?, ?, 'active', ?, ?)
+      `).run(snapshotId, input.projectRoot, input.profileHash, input.entry.sourceId, input.entry.schemaId, input.entry.contentHash, JSON.stringify(input.entry), activatedAt, activatedAt);
+            return { snapshotId, changed: true };
+        })();
+    }
+    listActiveCatalogEntries(projectRoot) {
+        return this.db.prepare(`
+      SELECT id, entry_json FROM knowledge_catalog_snapshots
+      WHERE project_root = ? AND status = 'active'
+      ORDER BY source_id
+    `).all(projectRoot).map(row => ({
+            ...JSON.parse(row.entry_json),
+            activeRevisionId: row.id,
+        }));
+    }
+    beginRefreshJob(input) {
+        const now = input.now ?? Date.now();
+        const id = `refresh:${createHash('sha256').update([
+            input.projectRoot,
+            input.sourceId,
+            input.inputContentHash,
+        ].join('\0')).digest('hex').slice(0, 32)}`;
+        const existing = this.db.prepare('SELECT status FROM knowledge_refresh_jobs WHERE id = ?').get(id);
+        if (existing?.status === 'completed')
+            return { id, status: 'completed', resumed: false };
+        const active = this.db.prepare(`
+      SELECT id FROM knowledge_catalog_snapshots
+      WHERE project_root = ? AND source_id = ? AND status = 'active'
+    `).get(input.projectRoot, input.sourceId);
+        this.db.prepare(`
+      INSERT INTO knowledge_refresh_jobs
+        (id, project_root, source_id, input_content_hash, previous_snapshot_id,
+         status, created_at, updated_at)
+      VALUES (?, ?, ?, ?, ?, 'compiling', ?, ?)
+      ON CONFLICT(id) DO UPDATE SET
+        status = 'compiling', error = NULL, updated_at = excluded.updated_at
+    `).run(id, input.projectRoot, input.sourceId, input.inputContentHash, active?.id ?? null, now, now);
+        return { id, status: 'compiling', resumed: existing !== undefined };
+    }
+    completeRefreshJob(id, outputSnapshotId, now = Date.now()) {
+        return this.db.prepare(`
+      UPDATE knowledge_refresh_jobs
+      SET status = 'completed', output_snapshot_id = ?, error = NULL, updated_at = ?
+      WHERE id = ? AND status <> 'completed'
+    `).run(outputSnapshotId, now, id).changes === 1;
+    }
+    failRefreshJob(id, error, now = Date.now()) {
+        return this.db.prepare(`
+      UPDATE knowledge_refresh_jobs
+      SET status = 'failed', error = ?, updated_at = ?
+      WHERE id = ? AND status <> 'completed'
+    `).run(error.slice(0, 1_000), now, id).changes === 1;
+    }
+    getRefreshJob(id) {
+        return this.db.prepare('SELECT * FROM knowledge_refresh_jobs WHERE id = ?').get(id) ?? null;
+    }
+    recordCoverageGap(gap) {
+        const result = this.db.prepare(`
+      INSERT INTO knowledge_coverage_gaps
+        (id, project_root, source_id, kind, gap_json, detected_at, resolved_at)
+      VALUES (?, ?, ?, ?, ?, ?, ?)
+      ON CONFLICT(id) DO UPDATE SET
+        gap_json = excluded.gap_json,
+        detected_at = excluded.detected_at,
+        resolved_at = excluded.resolved_at
+    `).run(gap.id, gap.projectRoot, gap.sourceId, gap.kind, JSON.stringify(gap), gap.detectedAt, gap.resolvedAt ?? null);
+        return result.changes === 1;
+    }
+    resolveCoverageGap(id, resolvedAt = Date.now()) {
+        const row = this.db.prepare('SELECT gap_json FROM knowledge_coverage_gaps WHERE id = ? AND resolved_at IS NULL').get(id);
+        if (!row)
+            return false;
+        const gap = JSON.parse(row.gap_json);
+        gap.resolvedAt = resolvedAt;
+        return this.db.prepare(`
+      UPDATE knowledge_coverage_gaps SET resolved_at = ?, gap_json = ? WHERE id = ?
+    `).run(resolvedAt, JSON.stringify(gap), id).changes === 1;
+    }
+    listCoverageGaps(projectRoot, options = {}) {
+        const sql = options.includeResolved
+            ? 'SELECT gap_json FROM knowledge_coverage_gaps WHERE project_root = ? ORDER BY detected_at DESC, id'
+            : 'SELECT gap_json FROM knowledge_coverage_gaps WHERE project_root = ? AND resolved_at IS NULL ORDER BY detected_at DESC, id';
+        return this.db.prepare(sql).all(projectRoot).map(row => JSON.parse(row.gap_json));
+    }
+    upsertNormalizedPage(page) {
+        if (page.provenance.contentHash !== page.contentHash || page.provenance.immutable !== true) {
+            throw new Error(`Knowledge page ${page.id} has invalid immutable provenance`);
+        }
+        const existing = this.db.prepare('SELECT project_root, source_id, content_hash FROM knowledge_pages WHERE id = ?').get(page.id);
+        if (existing && (existing.project_root !== page.projectRoot || existing.source_id !== page.sourceId)) {
+            throw new Error(`Knowledge page ${page.id} cannot move across project or source boundaries`);
+        }
+        if (existing?.content_hash === page.contentHash)
+            return false;
+        this.db.transaction(() => {
+            this.db.prepare(`
+        INSERT INTO knowledge_pages
+          (id, project_root, source_id, source_schema_id, title, markdown, frontmatter,
+           entities, symbols, links, version, content_hash, provenance, status, compiled_at)
+        VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, 'active', ?)
+        ON CONFLICT(id) DO UPDATE SET
+          source_schema_id = excluded.source_schema_id,
+          title = excluded.title,
+          markdown = excluded.markdown,
+          frontmatter = excluded.frontmatter,
+          entities = excluded.entities,
+          symbols = excluded.symbols,
+          links = excluded.links,
+          version = excluded.version,
+          content_hash = excluded.content_hash,
+          provenance = excluded.provenance,
+          status = 'active',
+          compiled_at = excluded.compiled_at
+      `).run(page.id, page.projectRoot, page.sourceId, page.sourceSchemaId, page.title, page.markdown, JSON.stringify(page.frontmatter), JSON.stringify(page.entities), JSON.stringify(page.symbols), JSON.stringify(page.links), page.version ?? null, page.contentHash, JSON.stringify(page.provenance), page.compiledAt);
+            this.replacePageLinks(page);
+        })();
+        return true;
+    }
+    replaceCompiledPage(page, chunks) {
+        if (chunks.some(chunk => chunk.pageId !== page.id
+            || chunk.projectRoot !== page.projectRoot
+            || chunk.sourceId !== page.sourceId
+            || chunk.provenance.contentHash !== page.contentHash)) {
+            throw new Error(`Compiled chunks for ${page.id} do not share page provenance`);
+        }
+        const oldIds = this.db.prepare('SELECT id FROM knowledge_chunks WHERE page_id = ? OR doc_id = ?').all(page.id, page.id);
+        const deleteVector = this.db.prepare('DELETE FROM knowledge_vec WHERE id = ?');
+        const insert = this.db.prepare(`
+      INSERT INTO knowledge_chunks
+        (id, doc_id, chunk_index, heading_path, content, code_blocks, token_count,
+         chunk_kind, framework, api_identifiers, source_url, content_hash,
+         page_id, project_root, heading_breadcrumbs, embedding_text, original_start,
+         original_end, entities, symbols, links, oversized_atomic, provenance)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+    `);
+        this.db.transaction(() => {
+            this.upsertNormalizedPage(page);
+            this.upsertDoc({
+                id: page.id,
+                source: page.sourceId,
+                url: page.provenance.sourceUri,
+                title: page.title,
+                version: page.version,
+                contentHash: page.contentHash,
+                chunkPolicyVersion: KNOWLEDGE_CHUNK_POLICY_VERSION,
+            });
+            for (const row of oldIds)
+                deleteVector.run(row.id);
+            this.db.prepare('DELETE FROM knowledge_chunks WHERE page_id = ? OR doc_id = ?')
+                .run(page.id, page.id);
+            const insertEntity = this.db.prepare(`
+        INSERT OR IGNORE INTO knowledge_entity_links
+          (page_id, chunk_id, entity, normalized_entity) VALUES (?, ?, ?, ?)
+      `);
+            const insertSymbol = this.db.prepare(`
+        INSERT OR IGNORE INTO knowledge_symbol_links
+          (page_id, chunk_id, symbol, normalized_symbol) VALUES (?, ?, ?, ?)
+      `);
+            for (const chunk of chunks) {
+                insert.run(chunk.id, page.id, chunk.index, chunk.headingBreadcrumbs.join(' > '), chunk.content, extractCodeBlocks(chunk.content) || null, estimateStoredTokens(chunk.content), chunk.kind, page.sourceId, JSON.stringify(chunk.symbols), page.provenance.sourceUri, chunk.contentHash, page.id, page.projectRoot, JSON.stringify(chunk.headingBreadcrumbs), chunk.embeddingText, chunk.originalStart, chunk.originalEnd, JSON.stringify(chunk.entities), JSON.stringify(chunk.symbols), JSON.stringify(chunk.links), chunk.oversizedAtomic ? 1 : 0, JSON.stringify(chunk.provenance));
+                for (const entity of uniqueStrings(chunk.entities)) {
+                    insertEntity.run(page.id, chunk.id, entity, normalizeKnowledgeLookupKey(entity));
+                }
+                for (const symbol of uniqueStrings(chunk.symbols)) {
+                    insertSymbol.run(page.id, chunk.id, symbol, normalizeKnowledgeLookupKey(symbol));
+                }
+            }
+        })();
+    }
+    getNormalizedPage(id) {
+        const row = this.db.prepare("SELECT * FROM knowledge_pages WHERE id = ? AND status = 'active'").get(id);
+        return row ? {
+            id: row.id,
+            projectRoot: row.project_root,
+            sourceId: row.source_id,
+            sourceSchemaId: row.source_schema_id,
+            title: row.title,
+            markdown: row.markdown,
+            frontmatter: JSON.parse(row.frontmatter),
+            entities: parseStringArray(row.entities),
+            symbols: parseStringArray(row.symbols),
+            links: parseStringArray(row.links),
+            version: row.version ?? undefined,
+            contentHash: row.content_hash,
+            provenance: JSON.parse(row.provenance),
+            compiledAt: row.compiled_at,
+        } : null;
+    }
+    replacePageLinks(page) {
+        this.db.prepare('DELETE FROM knowledge_entity_links WHERE page_id = ?').run(page.id);
+        this.db.prepare('DELETE FROM knowledge_symbol_links WHERE page_id = ?').run(page.id);
+        const insertEntity = this.db.prepare(`
+      INSERT OR IGNORE INTO knowledge_entity_links
+        (page_id, chunk_id, entity, normalized_entity) VALUES (?, '', ?, ?)
+    `);
+        const insertSymbol = this.db.prepare(`
+      INSERT OR IGNORE INTO knowledge_symbol_links
+        (page_id, chunk_id, symbol, normalized_symbol) VALUES (?, '', ?, ?)
+    `);
+        for (const entity of uniqueStrings(page.entities)) {
+            insertEntity.run(page.id, entity, normalizeKnowledgeLookupKey(entity));
+        }
+        for (const symbol of uniqueStrings(page.symbols)) {
+            insertSymbol.run(page.id, symbol, normalizeKnowledgeLookupKey(symbol));
+        }
+    }
     close() { this.db.close(); }
 }
 function enrichChunkMetadata(chunk, source, url, headingPath) {
@@ -484,4 +903,32 @@ function isPollutedHeading(value) {
     return /(?:^| > )(?:menu|sidebar|table of contents|previous|next|edit this page|on this page)(?:$| > )/iu.test(value)
         || /#undefined|\[\]\(/iu.test(value);
 }
+function parseStringArray(value) {
+    try {
+        const parsed = JSON.parse(value);
+        return Array.isArray(parsed)
+            ? parsed.filter((entry) => typeof entry === 'string')
+            : [];
+    }
+    catch {
+        return [];
+    }
+}
+function uniqueStrings(values) {
+    const seen = new Set();
+    return values.filter(value => {
+        const key = normalizeKnowledgeLookupKey(value);
+        if (!key || seen.has(key))
+            return false;
+        seen.add(key);
+        return true;
+    });
+}
+function normalizeKnowledgeLookupKey(value) {
+    return value.normalize('NFKC').trim().toLocaleLowerCase('en-US').replace(/\s+/gu, ' ');
+}
+function estimateStoredTokens(value) {
+    const cjk = value.match(/[\u3400-\u9fff\uf900-\ufaff]/gu)?.length ?? 0;
+    return Math.max(1, cjk + Math.ceil((value.length - cjk) / 4));
+}
 //# sourceMappingURL=knowledge-store.js.map

package/dist/knowledge-store.js.map

@@ -1 +1 @@
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package/dist/markdown-converter.d.ts

@@ -11,7 +11,7 @@ export interface Chunk {
 }
 export declare const MIN_CHUNK_CHARS = 500;
 export declare const MAX_CHUNK_CHARS = 3000;
-export declare const KNOWLEDGE_CHUNK_POLICY_VERSION = 2;
+export declare const KNOWLEDGE_CHUNK_POLICY_VERSION = 3;
 export declare const MAX_CHUNK_TOKENS = 3000;
 export declare function extractCodeBlocks(text: string): string;
 export declare function inferKnowledgeChunkKind(headingPath: string, content: string): KnowledgeChunkKind;

package/dist/markdown-converter.js

@@ -62,7 +62,7 @@ function isLinkDense(line) {
 }
 export const MIN_CHUNK_CHARS = 500;
 export const MAX_CHUNK_CHARS = 3000;
-export const KNOWLEDGE_CHUNK_POLICY_VERSION = 2;
+export const KNOWLEDGE_CHUNK_POLICY_VERSION = 3;
 const TARGET_CHUNK_TOKENS = 1200;
 export const MAX_CHUNK_TOKENS = 3000;
 // Doctor measures stored chunk size in characters. Keep the default path

package/dist/retrieval-scoring-profile.d.ts

@@ -0,0 +1,20 @@
+export type KnowledgeRetrievalChannel = 'exact' | 'bm25' | 'entity' | 'vector';
+export interface KnowledgeRetrievalScoringProfile {
+    version: string;
+    rrfK: number;
+    channelWeights: Record<KnowledgeRetrievalChannel, number>;
+    pageTailWeight: number;
+    pageTailCap: number;
+    graphSeedMinimum: number;
+    graphCandidateMinimum: number;
+}
+export declare const KNOWLEDGE_RETRIEVAL_SCORING_PROFILE: KnowledgeRetrievalScoringProfile;
+export declare function weightedReciprocalRankFusion(input: {
+    channelRanks: Partial<Record<KnowledgeRetrievalChannel, string[]>>;
+    profile?: KnowledgeRetrievalScoringProfile;
+}): Map<string, {
+    rawScore: number;
+    normalizedScore: number;
+    channelRanks: Partial<Record<KnowledgeRetrievalChannel, number>>;
+}>;
+//# sourceMappingURL=retrieval-scoring-profile.d.ts.map

package/dist/retrieval-scoring-profile.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"retrieval-scoring-profile.d.ts","sourceRoot":"","sources":["../src/retrieval-scoring-profile.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,yBAAyB,GAAG,OAAO,GAAG,MAAM,GAAG,QAAQ,GAAG,QAAQ,CAAC;AAE/E,MAAM,WAAW,gCAAgC;IAC/C,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,EAAE,MAAM,CAAC;IACb,cAAc,EAAE,MAAM,CAAC,yBAAyB,EAAE,MAAM,CAAC,CAAC;IAC1D,cAAc,EAAE,MAAM,CAAC;IACvB,WAAW,EAAE,MAAM,CAAC;IACpB,gBAAgB,EAAE,MAAM,CAAC;IACzB,qBAAqB,EAAE,MAAM,CAAC;CAC/B;AAED,eAAO,MAAM,mCAAmC,EAAE,gCAajD,CAAC;AAEF,wBAAgB,4BAA4B,CAAC,KAAK,EAAE;IAClD,YAAY,EAAE,OAAO,CAAC,MAAM,CAAC,yBAAyB,EAAE,MAAM,EAAE,CAAC,CAAC,CAAC;IACnE,OAAO,CAAC,EAAE,gCAAgC,CAAC;CAC5C,GAAG,GAAG,CAAC,MAAM,EAAE;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,eAAe,EAAE,MAAM,CAAC;IACxB,YAAY,EAAE,OAAO,CAAC,MAAM,CAAC,yBAAyB,EAAE,MAAM,CAAC,CAAC,CAAC;CAClE,CAAC,CAwBD"}