@devflow-tools/devflow 0.16.12 → 0.16.14

package/dist/cli.js

@@ -1,52 +1,52 @@
 #!/usr/bin/env node
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i&&(!st(e)||i.pid===st(e))&&updateRuntimeEndpointStatus("degraded"),{running:false,port:n}}async function yc(e,t){let n=Date.now()+t;for(;Date.now()<n;){try{if((await fetch(new URL("/api/health",e),{signal:AbortSignal.timeout(500)})).ok)return !0}catch{}await new Promise(o=>setTimeout(o,100));}return  false}var yr,Cn,_e=A(()=>{yr=createRequire(import.meta.url);Cn=DEFAULT_DEVFLOW_SERVER_PORT;});var os={};x(os,{renderDoctorText:()=>ts,runDoctor:()=>Ql,runDoctorAudit:()=>eu,runDoctorAuditFix:()=>tu,runDoctorCommand:()=>Xl,runDoctorReceipts:()=>ou,runDoctorViolations:()=>nu,runLegacyDoctorReport:()=>ns,runStructuredDoctor:()=>Kn});function Mt(e){return createHash("sha256").update(e).digest("hex").slice(0,16)}function wr(e){return join$1(homedir$1(),".devflow","daemons",`${Mt(e)}.sock`)}function xc(){return join$1(homedir$1(),".devflow","daemons.json")}function Ur(){if(At)return At;try{let e=createRequire$1(import.meta.url)("node:sqlite");if(typeof e.DatabaseSync!="function")throw new 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f.rootPath!="string"||f.rootPath.length===0?!1:In(f.rootPath).path===n.path});s.push({key:"project_daemon_registrations",value:l.length,ok:!0,severity:"info"}),s.push({key:"hook_daemon_registration",value:{activeProjectRegistrations:l.length},target:"0 when idle or 1 while active",ok:l.length<=1,severity:"warning"});let u=l.map(g=>wr(g.rootPath));s.push({key:"registered_daemon_socket_paths",value:u,target:[r],ok:!0,severity:"info"});let d=l.filter((g,f)=>g.projectHash!==o||u[f]!==r).length;s.push({key:"daemon_identity_mismatches",value:d,target:0,ok:d===0,severity:"warning"});}catch{s.push({key:"daemon_registry",value:"malformed",target:"valid daemon entry array",ok:false,severity:"warning"}),s.push({key:"invalid_daemon_registry_entries",value:1,target:0,ok:false,severity:"warning"}),s.push({key:"hook_daemon_registration",value:"unreadable daemon registry",target:"valid project registration",ok:false,severity:"warning"});}return {name:"Isolation",status:N(s),metrics:s}}function 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+    `);l.setReadBigInts?.(!0);let u=l.all(),d=new Set,g=0,f=0;for(let _ of u){let T=Mc(_.event_ids),J=Wr(_.session_ids),ne=$n(_.event_count),D=$n(_.created_at),U=$n(_.expires_at),X=typeof _.status=="string"&&Fc.has(_.status)?_.status:null,$=typeof _.batch_id=="string"&&_.batch_id.trim().length>0,M=T!==null&&ne!==null&&Lc(ne,T.length);if(!$||!T||!J||!M||D===null||U===null||X===null){g+=1,_.status==="pending"&&(U===null||br(U,c))&&(f+=1);continue}if(!(X!=="pending"||!br(U,c)))for(let W of T)d.add(W);}n.push({key:"malformed_distill_leases",value:g,target:0,ok:g===0,severity:f>0?"error":"warning"});let m=i.prepare(`
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+    `).all(c-300*1e3).filter(_=>!d.has(_.id)).length;n.push({key:"unprocessed_stale_events",value:m,target:0,ok:m===0,severity:"error"});let h=z(i,"SELECT COUNT(*) count FROM session_events WHERE processed = 0");n.push({key:"pending_memory_events",value:h,target:"actively leased or younger than 5 minutes",ok:m===0,severity:"error"});let y=i.prepare("SELECT MIN(created_at) oldest FROM session_events WHERE processed = 0").get(),k=y?.oldest==null?null:Number(y.oldest);n.push({key:"pending_memory_oldest_age_ms",value:k===null?0:Math.max(0,c-k),target:"<= 300000 when no active lease is present",ok:k===null||m===0,severity:"warning"});let C=z(i,`
       SELECT COUNT(*) count
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-    `);n.push({key:"orphan_memory_events",value:R,target:0,ok:R===0,severity:"error"});let v=B(i,`
+    `);n.push({key:"orphan_memory_events",value:C,target:0,ok:C===0,severity:"error"});let v=z(i,`
       SELECT COUNT(*) count
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-    `,c-Nn);n.push({key:"stale_memory_sessions",value:v,target:0,ok:v===0,severity:"error"});let b=i.prepare(`
+    `,c-Mn);n.push({key:"stale_memory_sessions",value:v,target:0,ok:v===0,severity:"error"});let b=i.prepare(`
       SELECT COUNT(*) AS group_count, COALESCE(SUM(title_count), 0) AS row_count
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         HAVING COUNT(*) > 1
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+          SELECT COUNT(*) count
+          FROM knowledge_chunks c
+          JOIN knowledge_docs d ON d.id = c.doc_id
+          WHERE 1 = 1 ${h}
+        `),k=z(g,`
+          SELECT COUNT(*) count
+          FROM knowledge_vec_rowids v
+          JOIN knowledge_chunks c ON c.id = v.id
+          JOIN knowledge_docs d ON d.id = c.doc_id
+          WHERE 1 = 1 ${h}
+        `),C=xn(y,k),b=g.prepare(`
           SELECT d.source source, COUNT(c.id) chunks,
             SUM(CASE WHEN v.id IS NOT NULL THEN 1 ELSE 0 END) vectors
           FROM knowledge_docs d
           LEFT JOIN knowledge_chunks c ON c.doc_id = d.id
           LEFT JOIN knowledge_vec_rowids v ON v.id = c.id
+          WHERE 1 = 1 ${h}
           GROUP BY d.source ORDER BY d.source
-        `).all().map(v=>{let b=Number(v.chunks),_=Number(v.vectors);return {source:v.source,chunks:b,vectors:_,coverage:Rn(b,_)}});n.push({key:"knowledge_chunks",value:m,ok:!0,severity:"info"}),n.push({key:"knowledge_vectors",value:h,ok:!0,severity:"info"}),n.push({key:"knowledge_vector_coverage",value:y,target:">= 0.95",ok:y>=.95,severity:"warning"}),n.push({key:"knowledge_vector_coverage_by_source",value:R,target:"every source >= 0.95",ok:R.every(v=>v.coverage>=.95),severity:"warning"});}}catch(f){n.push({key:"knowledge_vectors_read",value:f.message,target:"readable SQLite database",ok:false,severity:"error"});}finally{g?.close();}}let c=join$1(e,".devflow","memory","memories.db");if(!existsSync$1(c))n.push({key:"observation_vectors_db",value:"missing",target:c,ok:false,severity:"warning"});else {let g;try{if(g=ie(c,t),!W(g,"observations")||!W(g,"embeddings"))n.push({key:"observation_vector_schema",value:"observations/embeddings missing",target:"Batch 2 vector schema",ok:!1,severity:"warning"});else {let f=qe(g,"observations"),p=f.has("quality_status")&&f.has("resolution_state"),h=B(g,`SELECT COUNT(*) count FROM observations ${p?"WHERE quality_status = 'accepted' AND resolution_state <> 'superseded'":""}`),y=B(g,`
+        `).all().map(_=>{let T=Number(_.chunks),J=Number(_.vectors);return {source:_.source,chunks:T,vectors:J,coverage:xn(T,J)}});n.push({key:"knowledge_chunks",value:y,ok:!0,severity:"info"}),n.push({key:"knowledge_vectors",value:k,ok:!0,severity:"info"}),n.push({key:"knowledge_vector_coverage",value:C,target:">= 0.95",ok:C>=.95,severity:"warning"}),n.push({key:"knowledge_vector_coverage_by_source",value:b,target:"every source >= 0.95",ok:b.every(_=>_.coverage>=.95),severity:"warning"});}}catch(f){n.push({key:"knowledge_vectors_read",value:f.message,target:"readable SQLite database",ok:false,severity:"error"});}finally{g?.close();}}let c=join$1(e,".devflow","memory","memories.db");if(!existsSync$1(c))n.push({key:"observation_vectors_db",value:"missing",target:c,ok:false,severity:"warning"});else {let g;try{if(g=ee(c,t),!L(g,"observations")||!L(g,"embeddings"))n.push({key:"observation_vector_schema",value:"observations/embeddings missing",target:"Batch 2 vector schema",ok:!1,severity:"warning"});else {let f=fe(g,"observations"),p=f.has("quality_status")&&f.has("resolution_state"),h=z(g,`SELECT COUNT(*) count FROM observations ${p?"WHERE quality_status = 'accepted' AND resolution_state <> 'superseded'":""}`),y=z(g,`
           SELECT COUNT(DISTINCT e.source_id) count
           FROM embeddings e JOIN observations o ON o.id = e.source_id
           WHERE e.source_type = 'observation'
           ${p?"AND o.quality_status = 'accepted' AND o.resolution_state <> 'superseded'":""}
         `),k=Math.max(0,h-y);n.push({key:"observations",value:h,ok:!0,severity:"info"}),n.push({key:"observation_vectors",value:y,ok:!0,severity:"info"}),n.push({key:"observation_vectors_missing",value:k,target:0,ok:k===0,severity:"warning"});}}catch(f){n.push({key:"observation_vectors_read",value:f.message,target:"readable SQLite database",ok:false,severity:"error"});}finally{g?.close();}}let l=(t.now??Date.now)(),u=join$1(t.homePath??homedir$1(),".devflow","errors","embedder.log"),d=0;if(existsSync$1(u))try{let g=l-864e5;d=readFileSync$1(u,"utf8").split(`
-`).filter(f=>{let p=/^\[([^\]]+)\]/.exec(f);return p?Date.parse(p[1])>=g:!1}).length;}catch(g){n.push({key:"embedder_error_log_read",value:g.message,target:"readable error log",ok:false,severity:"error"});}n.push({key:"embedder_errors_24h",value:d,target:0,ok:d===0,severity:"warning"});try{let g=await(t.inspectEmbeddingModel??inspectEmbeddingModel)({homeDir:t.homePath,env:t.env??process.env});n.push({key:"embedding_model_state",value:{state:g.state,modelId:g.modelId,revision:g.revision},target:{state:"ready"},ok:g.ready,severity:"warning"}),n.push({key:"embedding_model_cache_root",value:g.cacheRoot,target:"stable shared DevFlow cache",ok:!0,severity:"info"}),n.push({key:"embedding_model_integrity",value:{missingFiles:g.missingFiles,corruptFiles:g.corruptFiles},target:{missingFiles:[],corruptFiles:[]},ok:g.missingFiles.length===0&&g.corruptFiles.length===0,severity:"warning"});}catch(g){n.push({key:"embedding_model_inspection",value:g.message,target:"readable verified shared model cache",ok:false,severity:"warning"});}return {name:"Vectors",status:T(n),metrics:n}}function $c(e,t,n){let o=[],r=n.homePath??homedir$1(),s=n.homePath?join$1(r,".devflow","global","devflow.db"):getGlobalDevFlowDbPath(r),i=(n.now??Date.now)()-1440*60*1e3,a=(n.now??Date.now)(),c=t?"error":"warning";if(!existsSync$1(s))o.push({key:"global_telemetry_db",value:"missing",target:s,ok:false,severity:"warning"});else {let m;try{m=ie(s,n),o.push({key:"global_telemetry_db",value:s,ok:!0,severity:"info"});for(let[A,I]of [["tool_metrics_24h","tool_metrics"],["feedback_24h","feedback"],["runs_24h","runs"]]){let H=W(m,I)?B(m,`SELECT COUNT(*) count FROM ${I} WHERE created_at >= ?`,i):0;o.push({key:A,value:H,ok:!0,severity:"info"});}let h=W(m,"telemetry_failures")?B(m,"SELECT COUNT(*) count FROM telemetry_failures WHERE created_at >= ?",i):0;o.push({key:"telemetry_failures_24h",value:h,target:0,ok:h===0,severity:c});let y=qe(m,"sessions"),k=qe(m,"tool_call_events"),R=qe(m,"skill_executions"),v=["id","project_root","started_at","status"].every(A=>y.has(A));if(o.push({key:"telemetry_session_schema",value:v?"canonical":"sessions table or identity columns missing",target:"canonical sessions table",ok:v,severity:"error"}),v){let A=B(m,`
+`).filter(f=>{let p=/^\[([^\]]+)\]/.exec(f);return p?Date.parse(p[1])>=g:!1}).length;}catch(g){n.push({key:"embedder_error_log_read",value:g.message,target:"readable error log",ok:false,severity:"error"});}n.push({key:"embedder_errors_24h",value:d,target:"trend; current readiness is gated by model state and integrity",ok:true,severity:"info"});try{let g=await(t.inspectEmbeddingModel??inspectEmbeddingModel)({homeDir:t.homePath,env:t.env??process.env});n.push({key:"embedding_model_state",value:{state:g.state,modelId:g.modelId,revision:g.revision},target:{state:"ready"},ok:g.ready,severity:"warning"}),n.push({key:"embedding_model_cache_root",value:g.cacheRoot,target:"stable shared DevFlow cache",ok:!0,severity:"info"}),n.push({key:"embedding_model_integrity",value:{missingFiles:g.missingFiles,corruptFiles:g.corruptFiles},target:{missingFiles:[],corruptFiles:[]},ok:g.missingFiles.length===0&&g.corruptFiles.length===0,severity:"warning"});}catch(g){n.push({key:"embedding_model_inspection",value:g.message,target:"readable verified shared model cache",ok:false,severity:"warning"});}return {name:"Vectors",status:N(n),metrics:n}}function qc(e,t,n){let o=[],r=n.homePath??homedir$1(),s=n.homePath?join$1(r,".devflow","global","devflow.db"):getGlobalDevFlowDbPath(r),i=(n.now??Date.now)()-1440*60*1e3,a=(n.now??Date.now)(),c=t?"error":"warning";if(!existsSync$1(s))o.push({key:"global_telemetry_db",value:"missing",target:s,ok:false,severity:"warning"});else {let m;try{m=ee(s,n),o.push({key:"global_telemetry_db",value:s,ok:!0,severity:"info"});for(let[$,M]of [["tool_metrics_24h","tool_metrics"],["feedback_24h","feedback"],["runs_24h","runs"]]){let W=L(m,M)?z(m,`SELECT COUNT(*) count FROM ${M} WHERE created_at >= ?`,i):0;o.push({key:$,value:W,ok:!0,severity:"info"});}let h=L(m,"telemetry_failures")?z(m,"SELECT COUNT(*) count FROM telemetry_failures WHERE created_at >= ?",i):0;o.push({key:"telemetry_failures_24h",value:h,target:0,ok:h===0,severity:c});let y=fe(m,"sessions"),k=fe(m,"tool_call_events"),C=fe(m,"skill_executions"),v=["id","project_root","started_at","status"].every($=>y.has($));if(o.push({key:"telemetry_session_schema",value:v?"canonical":"sessions table or identity columns missing",target:"canonical sessions table",ok:v,severity:"error"}),v){let $=z(m,`
           SELECT COUNT(*) count FROM sessions
           WHERE project_root = ? AND started_at >= ?
-        `,e,i);o.push({key:"session_start_evidence_24h",value:A,target:"present after a Claude SessionStart",ok:!0,severity:"info"});let I=B(m,`
+        `,e,i);o.push({key:"session_start_evidence_24h",value:$,target:"present after a Claude SessionStart",ok:!0,severity:"info"});let M=z(m,`
           SELECT COUNT(*) count FROM sessions
           WHERE project_root = ? AND status = 'running' AND started_at < ?
-        `,e,(n.now??Date.now)()-Nn);o.push({key:"stale_telemetry_sessions",value:I,target:0,ok:I===0,severity:"error"});let H=m.prepare(`
+        `,e,(n.now??Date.now)()-Mn);o.push({key:"stale_telemetry_sessions",value:M,target:0,ok:M===0,severity:"error"});let W=m.prepare(`
           SELECT status, COUNT(*) count
           FROM sessions
           WHERE project_root = ?
           GROUP BY status
-        `).all(e),N={running:0,completed:0,failed:0};for(let V of H)V.status in N&&(N[V.status]=Number(V.count));let re=N.running+N.completed+N.failed,Pe=N.completed+N.failed;if(o.push({key:"project_session_closure_state",value:{total:re,...N,closed:Pe,closureRate:re===0?1:Pe/re},target:"running sessions close through SessionEnd",ok:!0,severity:"info"}),W(m,"devflow_session_closures")){let V=m.prepare(`
+        `).all(e),j={running:0,completed:0,failed:0};for(let I of W)I.status in j&&(j[I.status]=Number(I.count));let Z=j.running+j.completed+j.failed,ae=j.completed+j.failed;if(o.push({key:"project_session_closure_state",value:{total:Z,...j,closed:ae,closureRate:Z===0?1:ae/Z},target:"running sessions close through SessionEnd",ok:!0,severity:"info"}),L(m,"devflow_session_closures")){let I=m.prepare(`
             SELECT state, COUNT(*) count
             FROM devflow_session_closures
             WHERE project_root = ?
             GROUP BY state
-          `).all(e),G={active:0,closing:0,closed:0,closed_with_pending_work:0};for(let ze of V)ze.state in G&&(G[ze.state]=Number(ze.count));let Z=B(m,`
+          `).all(e),K={active:0,closing:0,closed:0,closed_with_pending_work:0};for(let Me of I)Me.state in K&&(K[Me.state]=Number(Me.count));let le=z(m,`
             SELECT COUNT(*) count
             FROM devflow_session_closures
             WHERE project_root = ? AND state = 'closing' AND updated_at < ?
-          `,e,a-Nn);o.push({key:"durable_session_closure_state",value:{...G,staleClosing:Z},target:{active:0,closing:0,staleClosing:0},ok:G.active===0&&G.closing===0&&Z===0,severity:c});}else o.push({key:"durable_session_closure_state",value:"closure table missing",target:"active -> closing -> closed | closed_with_pending_work",ok:!1,severity:c});let ee=0;k.has("session_id")&&(ee=B(m,`
+          `,e,a-Mn);o.push({key:"durable_session_closure_state",value:{...K,staleClosing:le},target:{active:0,closing:0,staleClosing:0},ok:K.active===0&&K.closing===0&&le===0,severity:c});}else o.push({key:"durable_session_closure_state",value:"closure table missing",target:"active -> closing -> closed | closed_with_pending_work",ok:!1,severity:c});let ye=0;k.has("session_id")&&(ye=z(m,`
             SELECT COUNT(*) count
             FROM tool_call_events event
             LEFT JOIN sessions session ON session.id = event.session_id
             WHERE TRIM(COALESCE(event.session_id, '')) = '' OR session.id IS NULL
-          `));let se=0;if(R.has("session_id")&&(se=B(m,`
+          `));let ce=0;if(C.has("session_id")&&(ce=z(m,`
             SELECT COUNT(*) count
             FROM skill_executions execution
             LEFT JOIN sessions session ON session.id = execution.session_id
             WHERE TRIM(COALESCE(execution.session_id, '')) = '' OR session.id IS NULL
-          `)),o.push({key:"orphan_telemetry_events",value:{toolCalls:ee,skillExecutions:se},target:{toolCalls:0,skillExecutions:0},ok:ee===0&&se===0,severity:"error"}),["session_id","status","started_at"].every(V=>R.has(V))){let V=a-18e5,G=m.prepare(`
+          `)),o.push({key:"orphan_telemetry_events",value:{toolCalls:ye,skillExecutions:ce},target:{toolCalls:0,skillExecutions:0},ok:ye===0&&ce===0,severity:"error"}),["session_id","status","started_at"].every(I=>C.has(I))){let I=a-18e5,K=m.prepare(`
             SELECT
               COUNT(*) total,
               COALESCE(SUM(CASE WHEN execution.started_at < ? THEN 1 ELSE 0 END), 0) older_than_30m,
@@ -107,7 +119,7 @@ ${o.pid??0}`),o.unref(),{pid:o.pid??0}}async function rt(){let e=Sn(process.cwd(
             WHERE session.project_root = ?
               AND execution.status = 'running'
               AND (execution.started_at < ? OR session.status <> 'running')
-          `).get(V,e,V),Z=Number(G?.total??0);o.push({key:"stale_skill_executions",value:{total:Z,olderThan30m:Number(G?.older_than_30m??0),attachedToNonRunningSession:Number(G?.non_running_session??0)},target:{total:0},ok:Z===0,severity:"error"});}else o.push({key:"skill_execution_schema",value:"status, started_at, or session_id column missing",target:"canonical Skill execution lifecycle schema",ok:!1,severity:"warning"});}if(!W(m,"devflow_work_items"))o.push({key:"work_queue_schema",value:"devflow_work_items table missing; queue diagnostics degraded",target:"canonical global work queue schema",ok:!1,severity:"error"});else {let A=qe(m,"devflow_work_items"),H=["project_root","state","lease_expires_at","created_at","completed_at"].filter(N=>!A.has(N));if(H.length>0)o.push({key:"work_queue_schema",value:{missingColumns:H,diagnostic:"queue diagnostics degraded"},target:"canonical global work queue schema",ok:!1,severity:"error"});else {let N=m.prepare(`
+          `).get(I,e,I),le=Number(K?.total??0);o.push({key:"stale_skill_executions",value:{total:le,olderThan30m:Number(K?.older_than_30m??0),attachedToNonRunningSession:Number(K?.non_running_session??0)},target:{total:0},ok:le===0,severity:"error"});}else o.push({key:"skill_execution_schema",value:"status, started_at, or session_id column missing",target:"canonical Skill execution lifecycle schema",ok:!1,severity:"warning"});}if(!L(m,"devflow_work_items"))o.push({key:"work_queue_schema",value:"devflow_work_items table missing; queue diagnostics degraded",target:"canonical global work queue schema",ok:!1,severity:"error"});else {let $=fe(m,"devflow_work_items"),W=["project_root","state","lease_expires_at","created_at","completed_at"].filter(j=>!$.has(j));if(W.length>0)o.push({key:"work_queue_schema",value:{missingColumns:W,diagnostic:"queue diagnostics degraded"},target:"canonical global work queue schema",ok:!1,severity:"error"});else {let j=m.prepare(`
             SELECT
               COALESCE(SUM(CASE WHEN state IN ('pending', 'leased', 'failed') THEN 1 ELSE 0 END), 0) queue_depth,
               COALESCE(SUM(CASE WHEN state = 'pending' THEN 1 ELSE 0 END), 0) pending,
@@ -119,50 +131,56 @@ ${o.pid??0}`),o.unref(),{pid:o.pid??0}}async function rt(){let e=Sn(process.cwd(
               MAX(CASE WHEN state = 'completed' THEN completed_at END) last_successful_drain_at
             FROM devflow_work_items
             WHERE project_root = ?
-          `).get(a,e),re=Number(N?.queue_depth??0),Pe=Number(N?.pending??0),ee=Number(N?.leased??0),se=Number(N?.failed??0),te=Number(N?.dead_letters??0),V=Number(N?.expired_leases??0),G=N?.oldest_pending_at==null?void 0:Number(N.oldest_pending_at),Z=N?.last_successful_drain_at==null?void 0:Number(N.last_successful_drain_at);o.push({key:"work_queue_schema",value:"canonical",target:"canonical global work queue schema",ok:!0,severity:"info"}),o.push({key:"work_queue_depth",value:re,ok:!0,severity:"info"}),o.push({key:"work_queue_pending",value:Pe,ok:!0,severity:"info"}),o.push({key:"work_queue_leased",value:ee,ok:!0,severity:"info"}),o.push({key:"work_queue_failed",value:se,target:0,ok:se===0,severity:"warning"}),o.push({key:"work_queue_oldest_pending_age_ms",value:G===void 0?0:Math.max(0,a-G),ok:!0,severity:"info"}),o.push({key:"work_queue_dead_letters",value:te,target:0,ok:te===0,severity:"error"}),o.push({key:"work_queue_expired_leases",value:V,target:0,ok:V===0,severity:"error"}),o.push({key:"work_queue_last_successful_drain_at",value:Z??null,ok:!0,severity:"info"});}}let b=n.env?.DEVFLOW_STATE_DIR??join$1(r,".devflow","state",Nt(e)),j=Object.fromEntries(["session-start-pending","memory-turn-pending","session-finalize-pending"].map(A=>{let I=join$1(b,A),H=existsSync$1(I)?readdirSync(I).filter(N=>N.includes(".json")).length:0;return [A,H]})),Y=Object.values(j).reduce((A,I)=>A+I,0);if(o.push({key:"hook_spool_backlog",value:{total:Y,...j},target:{total:0},ok:Y===0,severity:c}),W(m,"tool_call_events")){let A=v&&k.has("session_id"),I=qe(m,"tool_metrics"),H=k.has("event_id")&&I.has("tool_call_event_id")&&I.has("status"),N=[k.has("error")?"event.error":"NULL error",k.has("failure_category")?"event.failure_category":"NULL failure_category",k.has("output")?"event.output":"NULL output",H?"metric.status metric_status":"NULL metric_status"].join(", "),re=m.prepare(`
-          SELECT ${N}
+          `).get(a,e),Z=Number(j?.queue_depth??0),ae=Number(j?.pending??0),ye=Number(j?.leased??0),ce=Number(j?.failed??0),ve=Number(j?.dead_letters??0),I=Number(j?.expired_leases??0),K=j?.oldest_pending_at==null?void 0:Number(j.oldest_pending_at),le=j?.last_successful_drain_at==null?void 0:Number(j.last_successful_drain_at);o.push({key:"work_queue_schema",value:"canonical",target:"canonical global work queue schema",ok:!0,severity:"info"}),o.push({key:"work_queue_depth",value:Z,ok:!0,severity:"info"}),o.push({key:"work_queue_pending",value:ae,ok:!0,severity:"info"}),o.push({key:"work_queue_leased",value:ye,ok:!0,severity:"info"}),o.push({key:"work_queue_failed",value:ce,target:0,ok:ce===0,severity:"warning"}),o.push({key:"work_queue_oldest_pending_age_ms",value:K===void 0?0:Math.max(0,a-K),ok:!0,severity:"info"}),o.push({key:"work_queue_dead_letters",value:ve,target:0,ok:ve===0,severity:"error"}),o.push({key:"work_queue_expired_leases",value:I,target:0,ok:I===0,severity:"error"}),o.push({key:"work_queue_last_successful_drain_at",value:le??null,ok:!0,severity:"info"});}}let b=n.env?.DEVFLOW_STATE_DIR??join$1(r,".devflow","state",Mt(e)),T=Object.fromEntries(["session-start-pending","memory-turn-pending","session-finalize-pending"].map($=>{let M=join$1(b,$),W=existsSync$1(M)?readdirSync(M).filter(j=>j.includes(".json")).length:0;return [$,W]})),J=Object.values(T).reduce(($,M)=>$+M,0);if(o.push({key:"hook_spool_backlog",value:{total:J,...T},target:{total:0},ok:J===0,severity:c}),L(m,"tool_call_events")){let $=v&&k.has("session_id"),M=fe(m,"tool_metrics"),W=k.has("event_id")&&M.has("tool_call_event_id")&&M.has("status"),j=[k.has("error")?"event.error":"NULL error",k.has("failure_category")?"event.failure_category":"NULL failure_category",k.has("output")?"event.output":"NULL output",k.has("blocked")?"event.blocked":"0 blocked",k.has("block_reason")?"event.block_reason":"NULL block_reason",$?"event_session.status session_status":"NULL session_status",W?"metric.status metric_status":"NULL metric_status"].join(", "),Z=m.prepare(`
+          SELECT ${j}
           FROM tool_call_events event
-          ${H?"LEFT JOIN tool_metrics metric ON metric.tool_call_event_id = event.event_id":""}
-          ${A?"JOIN sessions event_session ON event_session.id = event.session_id":""}
+          ${W?"LEFT JOIN tool_metrics metric ON metric.tool_call_event_id = event.event_id":""}
+          ${$?"JOIN sessions event_session ON event_session.id = event.session_id":""}
           WHERE event.timestamp >= ?
-          ${A?"AND event_session.project_root = ?":""}
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+          SELECT access_type, COUNT(*) count
+          FROM retrieval_access_log
+          GROUP BY access_type
+        `).all();n.push({key:"memory_retrieval_attribution",value:Object.fromEntries(c.map(l=>[l.access_type,Number(l.count)])),target:"selected/exposed are distinct from adopted",ok:!0,severity:"info"});}if(L(r,"observations"))if(!fe(r,"observations").has("evidence_status"))n.push({key:"explicit_memory_evidence_schema",value:"evidence_status missing",target:"memory schema v8+",ok:!1,severity:"error"});else {let l=r.prepare(`
+            SELECT
+              COUNT(*) total,
+              SUM(CASE WHEN evidence_status = 'verified' THEN 1 ELSE 0 END) verified
+            FROM observations
+            WHERE source = 'explicit_intent' AND quality_status = 'accepted'
+          `).get(),u=Number(l?.total??0),d=Number(l?.verified??0);n.push({key:"explicit_memory_evidence_coverage",value:u>0?d/u:1,target:1,ok:u===0||d===u,severity:"warning"});}n.push({key:"memory_access_distribution",value:{neverAccessed:Number(a?.never_accessed??0),accessed:Number(a?.accessed??0)},ok:!0,severity:"info"});}}catch(s){n.push({key:"memory_quality_read",value:s.message,target:"readable memory database",ok:false,severity:"error"});}finally{r?.close();}return {name:"Memory quality",status:N(n),metrics:n}}function Jl(e,t){let n=[],o=join$1(e,".devflow","knowledge","knowledge.db");if(!existsSync$1(o))return n.push({key:"knowledge_db",value:"missing",target:o,ok:false,severity:"warning"}),{name:"Knowledge quality",status:N(n),metrics:n};let r;try{if(r=ee(o,t),!L(r,"knowledge_chunks"))n.push({key:"knowledge_schema",value:"knowledge_chunks missing",target:"Batch 3 knowledge schema",ok:!1,severity:"warning"});else {let i=fe(r,"knowledge_chunks").has("token_count")?"COALESCE(token_count, CAST((length(content) + 3) / 4 AS INTEGER))":"CAST((length(content) + 3) / 4 AS INTEGER)",a=r.prepare(`SELECT ${i} length FROM knowledge_chunks ORDER BY ${i}`).all().map(g=>Number(g.length)),c=Math.max(0,Math.ceil(a.length*.95)-1),l=a.length===0?0:a[c];n.push({key:"knowledge_chunk_length_p95",value:l,target:"<= 3000 tokens",ok:l<=3e3,severity:"error"});let u=r.prepare("SELECT sql FROM sqlite_master WHERE type = 'table' AND name = 'knowledge_fts'").get(),d=/tokenize\s*=\s*['\"]?trigram/i.test(u?.sql??"");if(n.push({key:"knowledge_fts_tokenizer",value:d?"trigram":"missing/non-trigram",target:"trigram",ok:d,severity:"warning"}),L(r,"knowledge_source_readiness")){let g=r.prepare(`
+          SELECT source, expected_version, documents, chunks, vectors, coverage, status, failure_category
+          FROM knowledge_source_readiness ORDER BY source
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Au=E.command("db").description("Manage DevFlow databases");Au.command("consolidate").description("Merge legacy project databases into the global database").option("--project <path>","Project directory",process.cwd()).option("--dry-run","Report rows and conflicts without writing").action(async e=>{let{consolidateDatabases:t,formatConsolidateResult:n}=await Promise.resolve().then(()=>(Go(),Vo)),o=t(e);for(let r of n(o))console.log(r);});E.command("connect [agent]").description("Configure the Claude Code MCP connection").option("--command <cmd>","MCP server command","devflow-mcp").action(async(e,t)=>{let n=process.cwd(),o=Ft(n);console.log(S.blue(`DevFlow connect \u2014 mode: ${o}`));let{connectAgent:r,getAvailableAgents:s}=await Promise.resolve().then(()=>(Zo(),Yo));if(e){let i=s();i.includes(e)||(console.log(S.red(`Unknown agent: ${e}`)),console.log(`Available: ${i.join(", ")}`),process.exit(1));}try{let i=await r({agent:e,command:t.command});for(let a of i)console.log(S.green(`\u2713 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e(E.opts().local);console.log(`${t.length} run(s)`);for(let n of t)console.log(`  ${n.runId} \u2014 ${n.status}`);});Lt.command("runs").description("Show workflow history").action(async()=>{let{getWorkflowRuns:e}=await Promise.resolve().then(()=>(nt(),tt)),t=await e(E.opts().local);if(t.length===0){console.log(S.dim("No runs yet."));return}for(let n of t){let o=n.finishedAt?`${n.finishedAt-n.startedAt}ms`:"running";console.log(`  ${n.runId} ${S.yellow(n.status)} ${o}`);}});var xs=E.command("embeddings").description("Manage the shared verified embedding model");xs.command("status").description("Inspect the shared embedding model without network access").option("--json","Output JSON").action(async e=>{let{getEmbeddingStatus:t,renderEmbeddingStatus:n}=await Promise.resolve().then(()=>(gn(),dn)),o=await t();console.log(e.json?JSON.stringify(o,null,2):n(o)),o.ready||(process.exitCode=1);});xs.command("prepare").description("Prepare and verify the shared embedding model").option("--endpoint 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${s.errors.join(", ")||"no content"}`);console.log(S.green(`
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Ku=P.command("db").description("Manage DevFlow databases");Ku.command("consolidate").description("Merge legacy project databases into the global database").option("--project <path>","Project directory",process.cwd()).option("--dry-run","Report rows and conflicts without writing").action(async e=>{let{consolidateDatabases:t,formatConsolidateResult:n}=await Promise.resolve().then(()=>(Xo(),Qo)),o=t(e);for(let r of n(o))console.log(r);});P.command("connect [agent]").description("Configure the Claude Code MCP connection").option("--command <cmd>","MCP server command","devflow-mcp").action(async(e,t)=>{let n=process.cwd(),o=Bt(n);console.log(S.blue(`DevFlow connect \u2014 mode: ${o}`));let{connectAgent:r,getAvailableAgents:s}=await Promise.resolve().then(()=>(tr(),er));if(e){let i=s();i.includes(e)||(console.log(S.red(`Unknown agent: ${e}`)),console.log(`Available: ${i.join(", ")}`),process.exit(1));}try{let i=await r({agent:e,command:t.command});for(let a of i)console.log(S.green(`\u2713 ${a}`));}catch(i){console.error(S.red(`Error: ${i.message}`)),process.exit(1);}});P.command("index").description("Show index status").option("--backfill-vectors","Reconcile the index and wait for symbol vectors").option("--watch","Start file watcher for hot updates (stub)").action(async e=>{let{getIndexStatus:t,refreshIndex:n}=await Promise.resolve().then(()=>(rr(),or)),o=e.backfillVectors?await n(P.opts().local):await t(P.opts().local);console.log(S.blue("Index Status")),console.log(`  Files:    ${o.totalFiles}`),console.log(`  Symbols:  ${o.totalSymbols}`),console.log(`  Indexing: ${o.indexing?"active":"idle"}`),e.watch&&console.log(S.dim("  (watch mode not yet implemented)"));});P.command("graph [target]").description("Show dependency graph").option("--depth <n>","Expansion depth","2").action(async(e,t)=>{let{getGraph:n}=await Promise.resolve().then(()=>(ir(),sr)),o=await n({target:e,depth:parseInt(t.depth,10),skipServer:P.opts().local});console.log(S.blue("Dependency Graph")),console.log(`  Nodes: ${o.nodes.length}`),console.log(`  Edges: ${o.edges.length}`);});P.command("context <query>").description("Retrieve project context for a query").option("--mode <mode>","fast | deep","fast").option("--max-tokens <n>","Max token budget","4000").option("--task","Use task-oriented mode with risk hints and next actions").option("--why","Show reasoning for file selection").action(async(e,t)=>{if(t.task){let{getTaskContext:n}=await Promise.resolve().then(()=>(fn(),gn)),o=await n({query:e,mode:t.mode,maxTokens:parseInt(t.maxTokens,10),skipServer:P.opts().local});console.log(JSON.stringify({requiredFiles:o.requiredFiles,optionalFiles:o.optionalFiles,riskHints:o.riskHints,nextActions:o.nextActions,reasoning:t.why?o.reasoning:void 0},null,2));}else {let{getContext:n}=await Promise.resolve().then(()=>(fn(),gn)),o=await n({query:e,mode:t.mode,maxTokens:parseInt(t.maxTokens,10),skipServer:P.opts().local});console.log(S.blue(`Context: "${e}"`)),console.log(`  Files:      ${o.files.length}`),console.log(`  Confidence: ${(o.confidence*100).toFixed(0)}%`),console.log(`  Tokens:     ${o.tokenCount}`);}});var Wt=P.command("workflow").description("Workflow management");Wt.command("list").description("List available workflows").action(async()=>{let{listWorkflows:e}=await Promise.resolve().then(()=>(ot(),nt)),t=await e(P.opts().local);if(t.length===0){console.log(S.dim("No workflows registered."));return}for(let n of t)console.log(`${S.green(n.name)} \u2014 ${n.description} (${n.stepCount} steps)`);});Wt.command("run <type> [input]").description("Run a workflow").action(async(e,t)=>{let{runWorkflow:n}=await Promise.resolve().then(()=>(ot(),nt)),o=await n(e,{input:t??""},P.opts().local);console.log(`Run:  ${o.runId}`),console.log(`Status: ${o.status}`),console.log(`Duration: ${o.duration}ms`);});Wt.command("status").description("Show running workflows").action(async()=>{let{getWorkflowStatus:e}=await Promise.resolve().then(()=>(ot(),nt)),t=await e(P.opts().local);console.log(`${t.length} run(s)`);for(let n of t)console.log(`  ${n.runId} \u2014 ${n.status}`);});Wt.command("runs").description("Show workflow history").action(async()=>{let{getWorkflowRuns:e}=await Promise.resolve().then(()=>(ot(),nt)),t=await e(P.opts().local);if(t.length===0){console.log(S.dim("No runs yet."));return}for(let n of t){let o=n.finishedAt?`${n.finishedAt-n.startedAt}ms`:"running";console.log(`  ${n.runId} ${S.yellow(n.status)} ${o}`);}});var Is=P.command("embeddings").description("Manage the shared verified embedding model");Is.command("status").description("Inspect the shared embedding model without network access").option("--json","Output JSON").action(async e=>{let{getEmbeddingStatus:t,renderEmbeddingStatus:n}=await Promise.resolve().then(()=>(hn(),pn)),o=await t();console.log(e.json?JSON.stringify(o,null,2):n(o)),o.ready||(process.exitCode=1);});Is.command("prepare").description("Prepare and verify the shared embedding model").option("--endpoint <url>","Preferred model endpoint (repeatable)",(e,t)=>[...t,e],[]).option("--timeout-ms <milliseconds>","Per-file download timeout","60000").option("--json","Output JSON").action(async e=>{try{let{prepareEmbeddings:t,renderEmbeddingStatus:n}=await Promise.resolve().then(()=>(hn(),pn)),o=Number(e.timeoutMs);if(!Number.isSafeInteger(o)||o<=0)throw new Error("--timeout-ms must be a positive integer");let r=await t({endpoints:e.endpoint,timeoutMs:o});e.json?console.log(JSON.stringify(r,null,2)):(console.log(n(r)),console.log(`  source: ${r.source}`),r.migratedFrom&&console.log(`  migrated from: ${r.migratedFrom}`),r.attemptedEndpoints.length>0&&console.log(`  endpoints: ${r.attemptedEndpoints.join(", ")}`));}catch(t){console.error(S.red(`Embedding model preparation failed: ${t.message}`)),process.exitCode=1;}});var Ie=P.command("memory").description("Memory management");Ie.command("show").description("Show current project memory").option("--source <source>","Filter memories by source").action(async e=>{let{showMemory:t}=await Promise.resolve().then(()=>(xe(),$e)),n=await t(P.opts().local,e.source);console.log(JSON.stringify(n,null,2));});Ie.command("list").description("List project memories").option("--source <source>","Filter memories by source").action(async e=>{let{showMemory:t}=await Promise.resolve().then(()=>(xe(),$e));console.log(JSON.stringify(await t(P.opts().local,e.source),null,2));});Ie.command("query [query]").description("Retrieve ranked project memory with a token budget").option("--purpose <purpose>","Retrieval purpose","task_context").option("--budget-tokens <count>","Maximum response tokens","2000").option("--scope <scope>","Memory scope to include (repeatable)",(e,t)=>[...t,e],[]).action(async(e,t)=>{let{queryMemory:n}=await Promise.resolve().then(()=>(xe(),$e)),o=await n({query:e,purpose:t.purpose,budgetTokens:Number.parseInt(t.budgetTokens,10),scopes:t.scope.length>0?t.scope:void 0,skipServer:P.opts().local});console.log(JSON.stringify(o,null,2));});Ie.command("set <key> <value>").description("Set a memory key").action(async(e,t)=>{let{setMemory:n}=await Promise.resolve().then(()=>(xe(),$e));await n(e,t,P.opts().local),console.log(S.green(`Memory set: ${e} = ${t}`));});Ie.command("review").description("Review memory candidates").action(async()=>{let{reviewCandidates:e}=await Promise.resolve().then(()=>(xe(),$e)),t=await e(P.opts().local);console.log(JSON.stringify(t,null,2));});Ie.command("backfill-obs-vectors").description("Backfill missing observation vectors").option("--batch-size <count>","Embedding batch size","32").action(async e=>{let{backfillObservationVectors:t}=await Promise.resolve().then(()=>(xe(),$e)),n=await t({batchSize:Number.parseInt(e.batchSize,10),onProgress:({processed:o,remaining:r})=>{console.log(`  vectors: ${o} processed, ${r} remaining`);}});console.log(S.green(`Observation vectors ready: ${n.processed} added, ${n.remaining} remaining`));});P.command("knowledge <query>").description("Search knowledge base").action(async e=>{let{queryKnowledge:t}=await Promise.resolve().then(()=>(dr(),ur)),o=(await t(e,void 0,void 0,P.opts().local)).results;console.log(S.blue(`Knowledge: "${e}"`)),console.log(`  Results: ${o.length}`);for(let r of o.slice(0,5))console.log(`  \u2014 ${r.title}`);});var Zn=P.command("docs").description("Documentation index management");Zn.command("sync [plugin-name]").description("Sync documentation for plugins").action(async e=>{console.log(S.blue(`\u25C9 Syncing docs${e?` for ${e} plugin`:""}`));let[{KnowledgeEngine:t},{EmbeddingProvider:n}]=await Promise.all([import('@devflow-tools/knowledge-engine'),import('@devflow-tools/memory-engine')]),o=new t({projectRoot:process.cwd(),embedder:new n});if(e){let r=await o.syncDocs(e);for(let s of r)s.added>0?console.log(`  ${S.green("\u2713")} ${s.source}  \u2192  ${s.added} chunks`):console.log(`  ${S.red("\u2717")} ${s.source}  \u2014  ${s.errors.join(", ")||"no content"}`);console.log(S.green(`
   ${e} docs synced to .devflow/knowledge/${e}/`));}else {let r=await o.getSources();for(let s of r){let i=await o.syncDocs(s.source.name);for(let a of i)a.added>0?console.log(`  ${S.green("\u2713")} ${a.source}  \u2192  ${a.added} chunks`):console.log(`  ${S.red("\u2717")} ${a.source}  \u2014  ${a.errors.join(", ")||"no content"}`);}console.log(S.green(`
-  All docs synced.`));}});Jn.command("backfill-vectors").description("Backfill missing knowledge chunk vectors").option("--source <name>","Only backfill one knowledge source").option("--batch-size <count>","Embedding batch size","32").action(async e=>{let{backfillKnowledgeVectors:t}=await Promise.resolve().then(()=>(hn(),pn)),n=await t({source:e.source,batchSize:Number.parseInt(e.batchSize,10),onProgress:({processed:o,remaining:r})=>{console.log(`  vectors: ${o} processed, ${r} remaining`);}});console.log(S.green(`Knowledge vectors ready: ${n.processed} added, ${n.remaining} remaining`));});Jn.command("resync [plugin-name]").description("Rebuild documentation chunks before vector backfill").requiredOption("--with-headings","Use heading-aware 500-3000 character chunks").action(async(e,t)=>{let{resyncKnowledgeDocs:n}=await Promise.resolve().then(()=>(hn(),pn));console.log(S.blue(`Resyncing docs${e?` for ${e}`:""} with headings`));let o=await n({source:e,withHeadings:t.withHeadings});for(let r of o)r.added>0?console.log(`  ${S.green("\u2713")} ${r.source}  \u2192  ${r.added} chunks`):console.log(`  ${S.red("\u2717")} ${r.source}  \u2014  ${r.errors.join(", ")||"no content"}`);console.log(S.green("Docs resynced. Run `devflow docs backfill-vectors` to rebuild vectors."));});var gt=E.command("skill").description("Plugin/Skill management");gt.command("list").description("List installed skills").action(async()=>{let{listSkills:e}=await Promise.resolve().then(()=>(ve(),Ye)),t=await e(E.opts().local);if(t.length===0){console.log(S.dim("No skills installed. Use 'devflow skill search' to find plugins."));return}for(let n of t)console.log(`  ${S.green(n.name)} @ ${n.version} \u2014 ${n.description}`);});gt.command("search <query>").description("Search available plugins").action(async e=>{let{searchSkills:t}=await Promise.resolve().then(()=>(ve(),Ye)),n=await t(e,E.opts().local);if(console.log(S.blue(`Search: "${e}"`)),n.length===0){console.log(S.dim("  No matching plugins found."));return}for(let o of n)console.log(`  ${S.green(o.name)} @ ${o.version} \u2014 ${o.description}`);});gt.command("install <name>").description("Install a plugin/skill").action(async e=>{try{let{installSkill:t}=await Promise.resolve().then(()=>(ve(),Ye)),n=await t(e,process.cwd(),E.opts().local);console.log(S.green(`\u2713 Installed @devflow-tools/plugin-${n.name}@${n.version}`)),n.templates.length>0&&console.log(`  Templates: ${n.templates.join(", ")}`);}catch(t){console.log(S.red(`Error: ${t.message}`)),process.exit(1);}});gt.command("uninstall <name>").description("Uninstall a plugin/skill").action(async e=>{try{let{uninstallSkill:t}=await Promise.resolve().then(()=>(ve(),Ye));await t(e,process.cwd(),E.opts().local),console.log(S.green(`\u2713 Uninstalled ${e}`));}catch(t){console.log(S.red(`Error: ${t.message}`)),process.exit(1);}});gt.command("health").description("Validate installed DevFlow skill artifacts").option("--root <path>","Claude plugin root").option("--json","Output JSON").action(async e=>{let{showSkillHealth:t}=await Promise.resolve().then(()=>(yn(),ur));process.exitCode=t(e);});var Os=E.command("mcp").description("Inspect MCP configuration and health");Os.command("inventory").description("Show normalized MCP server inventory").option("--project <path>","Project directory",process.cwd()).option("--json","Output JSON").action(async e=>{let{showMcpInventory:t}=await Promise.resolve().then(()=>(kn(),vn));await t(e);});Os.command("health").description("Check or show cached MCP server health").option("--project <path>","Project directory",process.cwd()).option("--refresh","Refresh health checks").option("--json","Output JSON").action(async e=>{let{showMcpHealth:t}=await Promise.resolve().then(()=>(kn(),vn));await t(e);});E.command("doctor").description("Run project health check").option("--json","Output as JSON").option("--strict","Exit with status 1 when any health section has warnings or errors").option("--project <path>","Project directory",process.cwd()).option("--audit","Verify audit chain integrity").option("--audit-fix","Rebuild audit chain signatures").option("--violations","Show violation records").option("--last <period>","Filter violations by time (e.g. 7d, 24h)").option("--receipts","Show current session receipt status").action(async e=>{let{runDoctorCommand:t,runDoctorAudit:n,runDoctorAuditFix:o,runDoctorViolations:r,runDoctorReceipts:s}=await Promise.resolve().then(()=>(Xr(),Qr));if(e.audit){let a=await n();console.log(e.json?JSON.stringify(a):`Audit chain: ${a.valid?"VALID":`BROKEN at seq ${a.brokenAt}`} (${a.entryCount} entries)`);return}if(e.auditFix){let a=await o();console.log(e.json?JSON.stringify(a):"Audit chain rebuilt.");return}if(e.violations){let a=await r(e.last);console.log(e.json?JSON.stringify(a):JSON.stringify(a,null,2));return}if(e.receipts){let a=s();e.json?console.log(JSON.stringify(a)):a.data?console.log(JSON.stringify(a.data,null,2)):console.log(`No active receipt found for session ${a.sessionId}.`);return}let i=await t({project:e.project,json:e.json,strict:e.strict});process.exitCode=i;});Te.command("maintain").description("Audit or repair Memory data; defaults to a read-only dry-run").option("--project <path>","Project directory",process.cwd()).option("--actions <names>","Comma-separated actions").option("--apply","Apply changes after creating a SQLite backup").option("--json","Output the audit manifest as JSON").option("--batch-size <n>","Embedding backfill batch size","32").action(async e=>{try{let{runMemoryMaintainCommand:t}=await Promise.resolve().then(()=>(ts(),es));console.log(await t({projectRoot:e.project,actions:e.actions,apply:e.apply,json:e.json,batchSize:Number(e.batchSize)}));}catch(t){console.error(S.red(`Memory maintenance failed: ${t.message}`)),process.exitCode=1;}});E.command("session token").description("Generate a session token for MCP Gateway authentication").option("--expires <seconds>","Token TTL in seconds","3600").action(async e=>{let{generateToken:t}=await Promise.resolve().then(()=>(os(),ns)),n=await t(process.cwd(),parseInt(e.expires,10));console.log(JSON.stringify(n,null,2));});var Ns=E.command("benchmark").description("Run and inspect reproducible A/B benchmarks");Ns.command("run").description("Run a benchmark suite and persist the report").option("--suite <id>","Benchmark suite","default").option("--project <root>","Initialized project root",process.cwd()).option("--rounds <n>","Rounds per task","1").option("--output <format>","text | json","text").action(async e=>{let{runBenchmarkCommand:t}=await Promise.resolve().then(()=>(Bn(),Wn));console.log(await t({projectRoot:e.project,suite:e.suite,rounds:parseInt(e.rounds,10),output:e.output}));});Ns.command("report").description("Render a persisted benchmark report").option("--run-id <id>","Specific report; defaults to latest").option("--baseline <id>","Prior report used for regression comparison").option("--output <format>","text | json | markdown","text").action(async e=>{let{reportBenchmarkCommand:t}=await Promise.resolve().then(()=>(Bn(),Wn));console.log(await t({runId:e.runId,baselineRunId:e.baseline,output:e.output}));});E.command("review [pr-url]").description("Review a PR or current branch diff").option("--agent <agent>","AI agent to use","claude").action(async(e,t)=>{let{runReview:n}=await Promise.resolve().then(()=>(cs(),as)),o=await n({prUrl:e,agent:t.agent});console.log(o);});var Vn=E.command("server").description("Manage DevFlow server");Vn.command("start").description("Start the DevFlow REST server").option("--port <n>","Port number","13337").action(async e=>{console.log(S.blue("Starting DevFlow server..."));let{startServer:t}=await Promise.resolve().then(()=>(we(),Pt)),n=await t({port:parseInt(e.port,10)});console.log(S.green(`Server started (pid: ${n.pid}) on port ${e.port}`));});Vn.command("stop").description("Stop the DevFlow REST server").action(async()=>{let{stopServer:e}=await Promise.resolve().then(()=>(we(),Pt)),t=await e();console.log(t?S.green("Server stopped"):S.dim("No server running"));});Vn.command("status").description("Show server status").action(async()=>{let{serverStatus:e}=await Promise.resolve().then(()=>(we(),Pt)),t=await e();t.running?console.log(S.green(`Running (pid: ${t.pid})`)):console.log(S.yellow("Not running"));});E.command("dashboard").description("Open DevFlow Dashboard").action(()=>{console.log(S.blue("The Dashboard is served by the DevFlow server.")),console.log(S.dim("Run: devflow start")),console.log(S.dim("Then open: http://localhost:13337"));});E.command("start").description("Start DevFlow server (API + Dashboard)").option("--port <n>","Server port","13337").option("-d, --background","Run in background (detached)").action(async e=>{let{startAll:t}=await Promise.resolve().then(()=>(us(),ls));await t({port:parseInt(e.port,10),background:!!e.background});});E.command("stop").description("Stop DevFlow server").action(async()=>{let{stopAll:e}=await Promise.resolve().then(()=>(fs(),gs));await e();});E.command("status").description("Show DevFlow services status").action(async()=>{let{showStatus:e}=await Promise.resolve().then(()=>(hs(),ps));await e();});E.command("setup").description("Configure DevFlow for a supported agent host").option("--agent <agent>","Target host (claude-code/codex/generic-mcp)").option("--skip-mcp","Skip MCP configuration").option("--skip-plugin","Skip plugin registration").action(async e=>{let{setupCommand:t}=await Promise.resolve().then(()=>(vs(),ys));await t({agent:e.agent,skipMcp:!!e.skipMcp,skipPlugin:!!e.skipPlugin});});var Mt=E.command("plugin").description("Manage DevFlow plugins");if(process.argv.includes("plugin")){let[{pluginListCommand:e},{pluginSearchCommand:t},{pluginInstallCommand:n},{pluginUninstallCommand:o}]=await Promise.all([Promise.resolve().then(()=>(ws(),ks)),Promise.resolve().then(()=>(Ss(),bs)),Promise.resolve().then(()=>(Es(),Ps)),Promise.resolve().then(()=>(Ds(),Rs))]);Mt.addCommand(e),Mt.addCommand(t),Mt.addCommand(n),Mt.addCommand(o);}await E.parseAsync();
+  All docs synced.`));}});Zn.command("backfill-vectors").description("Backfill missing knowledge chunk vectors").option("--source <name>","Only backfill one knowledge source").option("--batch-size <count>","Embedding batch size","32").action(async e=>{let{backfillKnowledgeVectors:t}=await Promise.resolve().then(()=>(wn(),kn)),n=await t({source:e.source,batchSize:Number.parseInt(e.batchSize,10),onProgress:({processed:o,remaining:r})=>{console.log(`  vectors: ${o} processed, ${r} remaining`);}});console.log(S.green(`Knowledge vectors ready: ${n.processed} added, ${n.remaining} remaining`));});Zn.command("resync [plugin-name]").description("Rebuild documentation chunks before vector backfill").requiredOption("--with-headings","Use heading-aware 500-3000 character chunks").action(async(e,t)=>{let{resyncKnowledgeDocs:n}=await Promise.resolve().then(()=>(wn(),kn));console.log(S.blue(`Resyncing docs${e?` for ${e}`:""} with headings`));let o=await n({source:e,withHeadings:t.withHeadings});for(let r of o)r.added>0?console.log(`  ${S.green("\u2713")} ${r.source}  \u2192  ${r.added} chunks`):console.log(`  ${S.red("\u2717")} ${r.source}  \u2014  ${r.errors.join(", ")||"no content"}`);console.log(S.green("Docs resynced. Run `devflow docs backfill-vectors` to rebuild vectors."));});var pt=P.command("skill").description("Plugin/Skill management");pt.command("list").description("List installed skills").action(async()=>{let{listSkills:e}=await Promise.resolve().then(()=>(be(),Ze)),t=await e(P.opts().local);if(t.length===0){console.log(S.dim("No skills installed. Use 'devflow skill search' to find plugins."));return}for(let n of t)console.log(`  ${S.green(n.name)} @ ${n.version} \u2014 ${n.description}`);});pt.command("search <query>").description("Search available plugins").action(async e=>{let{searchSkills:t}=await Promise.resolve().then(()=>(be(),Ze)),n=await t(e,P.opts().local);if(console.log(S.blue(`Search: "${e}"`)),n.length===0){console.log(S.dim("  No matching plugins found."));return}for(let o of n)console.log(`  ${S.green(o.name)} @ ${o.version} \u2014 ${o.description}`);});pt.command("install <name>").description("Install a plugin/skill").action(async e=>{try{let{installSkill:t}=await Promise.resolve().then(()=>(be(),Ze)),n=await t(e,process.cwd(),P.opts().local);console.log(S.green(`\u2713 Installed @devflow-tools/plugin-${n.name}@${n.version}`)),n.templates.length>0&&console.log(`  Templates: ${n.templates.join(", ")}`);}catch(t){console.log(S.red(`Error: ${t.message}`)),process.exit(1);}});pt.command("uninstall <name>").description("Uninstall a plugin/skill").action(async e=>{try{let{uninstallSkill:t}=await Promise.resolve().then(()=>(be(),Ze));await t(e,process.cwd(),P.opts().local),console.log(S.green(`\u2713 Uninstalled ${e}`));}catch(t){console.log(S.red(`Error: ${t.message}`)),process.exit(1);}});pt.command("health").description("Validate installed DevFlow skill artifacts").option("--root <path>","Claude plugin root").option("--json","Output JSON").action(async e=>{let{showSkillHealth:t}=await Promise.resolve().then(()=>(bn(),mr));process.exitCode=t(e);});var Ms=P.command("mcp").description("Inspect MCP configuration and health");Ms.command("inventory").description("Show normalized MCP server inventory").option("--project <path>","Project directory",process.cwd()).option("--json","Output JSON").action(async e=>{let{showMcpInventory:t}=await Promise.resolve().then(()=>(_n(),Sn));await t(e);});Ms.command("health").description("Check or show cached MCP server health").option("--project <path>","Project directory",process.cwd()).option("--refresh","Refresh health checks").option("--json","Output JSON").action(async e=>{let{showMcpHealth:t}=await Promise.resolve().then(()=>(_n(),Sn));await t(e);});P.command("doctor").description("Run project health check").option("--json","Output as JSON").option("--strict","Exit with status 1 when any health section has warnings or errors").option("--project <path>","Project directory",process.cwd()).option("--audit","Verify audit chain integrity").option("--audit-fix","Rebuild audit chain signatures").option("--violations","Show violation records").option("--last <period>","Filter violations by time (e.g. 7d, 24h)").option("--receipts","Show current session receipt status").action(async e=>{let{runDoctorCommand:t,runDoctorAudit:n,runDoctorAuditFix:o,runDoctorViolations:r,runDoctorReceipts:s}=await Promise.resolve().then(()=>(rs(),os));if(e.audit){let a=await n();console.log(e.json?JSON.stringify(a):`Audit chain: ${a.valid?"VALID":`BROKEN at seq ${a.brokenAt}`} (${a.entryCount} entries)`);return}if(e.auditFix){let a=await o();console.log(e.json?JSON.stringify(a):"Audit chain rebuilt.");return}if(e.violations){let a=await r(e.last);console.log(e.json?JSON.stringify(a):JSON.stringify(a,null,2));return}if(e.receipts){let a=s();e.json?console.log(JSON.stringify(a)):a.data?console.log(JSON.stringify(a.data,null,2)):console.log(`No active receipt found for session ${a.sessionId}.`);return}let i=await t({project:e.project,json:e.json,strict:e.strict});process.exitCode=i;});Ie.command("maintain").description("Audit or repair Memory data; defaults to a read-only dry-run").option("--project <path>","Project directory",process.cwd()).option("--actions <names>","Comma-separated actions").option("--apply","Apply changes after creating a SQLite backup").option("--json","Output the audit manifest as JSON").option("--batch-size <n>","Embedding backfill batch size","32").action(async e=>{try{let{runMemoryMaintainCommand:t}=await Promise.resolve().then(()=>(is(),ss));console.log(await t({projectRoot:e.project,actions:e.actions,apply:e.apply,json:e.json,batchSize:Number(e.batchSize)}));}catch(t){console.error(S.red(`Memory maintenance failed: ${t.message}`)),process.exitCode=1;}});P.command("session token").description("Generate a session token for MCP Gateway authentication").option("--expires <seconds>","Token TTL in seconds","3600").action(async e=>{let{generateToken:t}=await Promise.resolve().then(()=>(cs(),as)),n=await t(process.cwd(),parseInt(e.expires,10));console.log(JSON.stringify(n,null,2));});var Ls=P.command("benchmark").description("Run and inspect reproducible A/B benchmarks");Ls.command("run").description("Run a benchmark suite and persist the report").option("--suite <id>","Benchmark suite","default").option("--project <root>","Initialized project root",process.cwd()).option("--rounds <n>","Rounds per task","1").option("--output <format>","text | json","text").action(async e=>{let{runBenchmarkCommand:t}=await Promise.resolve().then(()=>(zn(),Jn));console.log(await t({projectRoot:e.project,suite:e.suite,rounds:parseInt(e.rounds,10),output:e.output}));});Ls.command("report").description("Render a persisted benchmark report").option("--run-id <id>","Specific report; defaults to latest").option("--baseline <id>","Prior report used for regression comparison").option("--output <format>","text | json | markdown","text").action(async e=>{let{reportBenchmarkCommand:t}=await Promise.resolve().then(()=>(zn(),Jn));console.log(await t({runId:e.runId,baselineRunId:e.baseline,output:e.output}));});P.command("review [pr-url]").description("Review a PR or current branch diff").option("--agent <agent>","AI agent to use","claude").action(async(e,t)=>{let{runReview:n}=await Promise.resolve().then(()=>(fs(),gs)),o=await n({prUrl:e,agent:t.agent});console.log(o);});var Qn=P.command("server").description("Manage DevFlow server");Qn.command("start").description("Start the DevFlow REST server").option("--port <n>","Port number","13337").action(async e=>{console.log(S.blue("Starting DevFlow server..."));let{startServer:t}=await Promise.resolve().then(()=>(_e(),Ct)),n=await t({port:parseInt(e.port,10)});console.log(S.green(`Server started (pid: ${n.pid}) on port ${e.port}`));});Qn.command("stop").description("Stop the DevFlow REST server").action(async()=>{let{stopServer:e}=await Promise.resolve().then(()=>(_e(),Ct)),t=await e();console.log(t?S.green("Server stopped"):S.dim("No server running"));});Qn.command("status").description("Show server status").action(async()=>{let{serverStatus:e}=await Promise.resolve().then(()=>(_e(),Ct)),t=await e();t.running?console.log(S.green(`Running (pid: ${t.pid})`)):console.log(S.yellow("Not running"));});P.command("dashboard").description("Open DevFlow Dashboard").action(async()=>{let{resolveRuntimeEndpoint:e}=await import('@devflow-tools/sdk');console.log(S.blue("The Dashboard is served by the DevFlow server.")),console.log(S.dim("Run: devflow start")),console.log(S.dim(`Then open: ${e().url}`));});P.command("start").description("Start DevFlow server (API + Dashboard)").option("--port <n>","Server port","13337").option("-d, --background","Run in background (detached)").action(async e=>{let{startAll:t}=await Promise.resolve().then(()=>(ps(),ms));await t({port:parseInt(e.port,10),background:!!e.background});});P.command("stop").description("Stop DevFlow server").action(async()=>{let{stopAll:e}=await Promise.resolve().then(()=>(vs(),ys));await e();});P.command("status").description("Show DevFlow services status").action(async()=>{let{showStatus:e}=await Promise.resolve().then(()=>(bs(),ws));await e();});P.command("setup").description("Configure DevFlow for a supported agent host").option("--agent <agent>","Target host (claude-code/codex/generic-mcp)").option("--skip-mcp","Skip MCP configuration").option("--skip-plugin","Skip plugin registration").action(async e=>{let{setupCommand:t}=await Promise.resolve().then(()=>(_s(),Ss));await t({agent:e.agent,skipMcp:!!e.skipMcp,skipPlugin:!!e.skipPlugin});});var Ut=P.command("plugin").description("Manage DevFlow plugins");if(process.argv.includes("plugin")){let[{pluginListCommand:e},{pluginSearchCommand:t},{pluginInstallCommand:n},{pluginUninstallCommand:o}]=await Promise.all([Promise.resolve().then(()=>(Ps(),Es)),Promise.resolve().then(()=>(Cs(),Rs)),Promise.resolve().then(()=>($s(),As)),Promise.resolve().then(()=>(Ns(),Os))]);Ut.addCommand(e),Ut.addCommand(t),Ut.addCommand(n),Ut.addCommand(o);}await P.parseAsync();