@descent-vtt/spec-harness 0.16.0 → 0.18.0

package/dist/setup.d.ts

@@ -26,6 +26,13 @@ export interface Step {
  * doctor both read it. `path` is `null` when git cannot say where its hooks
  * are. `note` is what there is to say of how a hook that runs the harness
  * runs it, or `null`.
+ *
+ * Only a file is read. A directory under the hook's name, which a
+ * repository whose `core.hooksPath` is in its work tree can hold, is not a
+ * hook and is one to git all the same: it tries to run what it can execute
+ * there, fails, and stops the commit (ADR-0005 has what was measured). Read
+ * as a file, it ended this on Node's EISDIR and a stack, and a named pipe
+ * would have kept it from ever coming back.
  */
 export declare function gitHook(root: string): Promise<{
     readonly hook: GitHookState;

package/dist/setup.js

@@ -11,18 +11,18 @@
  * that exist and never replaces what a person wrote; a git hook the
  * repository already has is left alone, with the line to add printed instead.
  */
-import { existsSync, statSync } from 'node:fs';
+import { accessSync, constants, existsSync, statSync } from 'node:fs';
 import { chmod, mkdir, readFile } from 'node:fs/promises';
 import { dirname, isAbsolute, join, relative, sep } from 'node:path';
 import { CONFIG_FILE } from './config.js';
-import { chooseBase, describeGitHook, describeGraph, describeSkipped, GIT_HOOK_LINE, gitHookNote, graphReadsBriefs, GUARD_HOOK, isStarted, loadsPlugin, measuresArchive, mergeClaudeSettings, mergeMcp, mergeSpecBrief, mergeSpecGraph, missingGitHook, PLUGIN, PRE_COMMIT, PROTECT_RULE_FILES, registersServer, SPEC_BRIEF_CONFIGS, SPEC_GRAPH_CONFIGS, } from './configure.js';
+import { arrayMatcher, chooseBase, commasUnder, describeAbsent, describeArrayMatcher, describeGitHook, describeGraph, describeHooksOff, describePresence, describeSkipped, GIT_HOOK_LINE, gitHookNote, graphReadsBriefs, GUARD_HOOK, guardSwitchedOff, isStarted, loadsPlugin, measuresArchive, mergeClaudeSettings, mergeMcp, mergeSpecBrief, mergeSpecGraph, missingGitHook, ONE_STRING, patternReader, PLUGIN, PRE_COMMIT, PROJECT_SETTINGS, PROTECT_RULE_FILES, registersServer, SPEC_BRIEF_CONFIGS, SPEC_GRAPH_CONFIGS, } from './configure.js';
 import { readJsonObject as readJson, writeAtomic } from './fs.js';
 import { hookPath, localBranches, remoteDefault } from './git.js';
 import { claudeCodeWiring, pluginFile } from './round.js';
 import { runSibling } from './siblings.js';
-import { EXIT_ERROR, EXIT_OK, json, openWorkspace } from './workspace.js';
+import { answerOf, EXIT_ERROR, EXIT_OK, json, openWorkspace } from './workspace.js';
 /** The project's settings file for Claude Code, as a person finds it and as doctor names it. */
-const SETTINGS = '.claude/settings.json';
+const SETTINGS = PROJECT_SETTINGS;
 function stringify(value) {
     return `${JSON.stringify(value, null, 2)}\n`;
 }
@@ -39,27 +39,62 @@ function shown(root, path) {
     const inside = relative(root, path);
     return inside.startsWith('..') || isAbsolute(inside) ? path : inside.split(sep).join('/');
 }
+/**
+ * Whether git takes what stands at a hook's path for a hook to run. git
+ * asks the system whether the path can be executed, and skips one that
+ * cannot, with no more than a hint: asked here the same way. On Windows the
+ * question is only whether the path is there (Node's fs page, File access
+ * constants, read 2026-10-14), and git there runs whatever is.
+ */
+function executable(path) {
+    let may = true;
+    try {
+        accessSync(path, constants.X_OK);
+    }
+    catch {
+        may = false;
+    }
+    return may;
+}
+/** What stands at a path, links followed, or `null` where nothing does: a link to nothing is nothing, to git as well. */
+function standing(path) {
+    try {
+        return statSync(path);
+    }
+    catch {
+        return null;
+    }
+}
 /**
  * git's pre-commit hook, where git runs it from, and what is there: init and
  * doctor both read it. `path` is `null` when git cannot say where its hooks
  * are. `note` is what there is to say of how a hook that runs the harness
  * runs it, or `null`.
+ *
+ * Only a file is read. A directory under the hook's name, which a
+ * repository whose `core.hooksPath` is in its work tree can hold, is not a
+ * hook and is one to git all the same: it tries to run what it can execute
+ * there, fails, and stops the commit (ADR-0005 has what was measured). Read
+ * as a file, it ended this on Node's EISDIR and a stack, and a named pipe
+ * would have kept it from ever coming back.
  */
 export async function gitHook(root) {
     const path = await hookPath('pre-commit', root);
     if (path === null)
         return { hook: { state: 'unknown', reason: 'git does not say where they are; spec-harness needs git 2.31 or later' }, path, note: null };
     const file = shown(root, path);
-    if (!existsSync(path))
+    const there = standing(path);
+    if (there === null)
         return { hook: { state: 'absent', file }, path, note: null };
+    const runs = executable(path);
+    if (!there.isFile()) {
+        const what = there.isDirectory() ? 'a directory' : 'neither a file nor a directory';
+        return { hook: { state: runs ? 'stops' : 'ignored', file, what }, path, note: null };
+    }
     const text = await readFile(path, 'utf8');
     if (!text.includes('spec-harness'))
         return { hook: { state: 'other', file }, path, note: null };
-    // git skips a hook it cannot execute, and says so only in a hint; Windows
-    // has no executable bit, and runs it.
-    // The Windows job holds the platform check; the sweep runs on Linux, where it is always true.
-    const inert = process.platform !== 'win32' && (statSync(path).mode & 0o111) === 0;
-    return { hook: { state: inert ? 'inert' : 'runs', file }, path, note: gitHookNote(text) };
+    return { hook: { state: runs ? 'runs' : 'inert', file }, path, note: gitHookNote(text) };
 }
 export async function plan(workspace, options, io) {
     const { root } = workspace;
@@ -72,7 +107,21 @@ export async function plan(workspace, options, io) {
     const harnessFile = join(root, CONFIG_FILE);
     const harness = (await readJson(harnessFile));
     const namedBase = harness !== null && typeof harness['base'] === 'string' ? harness['base'] : null;
-    const choice = namedBase === null ? chooseBase({ remoteDefault: await remoteDefault(root), branch: workspace.branch, branches: await localBranches(root) }) : null;
+    // What the plan asks of git and of Claude Code's settings waits on the
+    // root and on nothing of the rest, so it is asked at once: three of git's
+    // processes side by side where each waited on the one before. Each is
+    // read below where it was asked before, so a plan that fails still fails
+    // on the first of them in that order. The matchers in the settings are
+    // read with one reader, for the wiring and for what to write. Claude
+    // Code's release is asked only where what is read of a line turns on it.
+    const pattern = patternReader();
+    const [factsAsked, wiringAsked, hookAsked] = await Promise.allSettled([
+        namedBase === null ? Promise.all([remoteDefault(root), localBranches(root)]) : null,
+        claudeCodeWiring(root, io, pattern, false),
+        gitHook(root),
+    ]);
+    const facts = answerOf(factsAsked);
+    const choice = facts === null ? null : chooseBase({ remoteDefault: facts[0], branch: workspace.branch, branches: facts[1] });
     const base = choice === null ? namedBase : choice.base;
     // spec-brief first: every other setting is derived from its directories.
     const briefConfig = SPEC_BRIEF_CONFIGS.find((name) => existsSync(join(root, name)));
@@ -190,10 +239,17 @@ export async function plan(workspace, options, io) {
     // guard every write twice (ADR-0012). The hook's lines are known as doctor
     // knows them, by the hook's own reading and by the writes Claude Code
     // starts each for, so that the two say the same of every file (ADR-0005).
-    const wiring = await claudeCodeWiring(root, io);
+    const wiring = answerOf(wiringAsked);
     const { plugin } = wiring;
+    // A plugin that is not on this machine brings neither. init writes none
+    // on that reading alone, which a plugin that is there after all would
+    // make a second guard: it says what doctor says, and how to have the
+    // entries here instead.
+    const absent = wiring.presence?.state === 'absent' ? wiring.presence.detail : null;
     const settingsFile = join(root, '.claude', 'settings.json');
     const settings = await readJson(settingsFile);
+    // An array for a matcher, under which Claude Code loads no hook of the file.
+    const array = arrayMatcher(settings);
     const lines = wiring.lines.filter((line) => line.file === SETTINGS);
     // What doctor says of a line this file holds is said here too, with why
     // init leaves the line: one a person changed is theirs, and a second line
@@ -206,15 +262,28 @@ export async function plan(workspace, options, io) {
         // This file's own entry is said first, so the others are named only
         // where it holds none.
         const present = wiring.hooks.includes(SETTINGS);
-        steps.push({ file: SETTINGS, action: wiring.hooks.length > 0 ? 'advise' : 'skip', detail: describeSkipped(plugin, 'hooks', present, wiring.hooks) });
+        if (absent !== null)
+            steps.push({ file: SETTINGS, action: 'advise', detail: describeAbsent(plugin, absent, 'hooks', present) });
+        else {
+            // A plugin that cannot be told to be on this machine is no reason to
+            // write either: said beside the reason, as doctor says it.
+            const untold = describePresence(wiring);
+            const detail = describeSkipped(plugin, 'hooks', present, wiring.hooks);
+            steps.push({ file: SETTINGS, action: wiring.hooks.length > 0 ? 'advise' : 'skip', detail: untold === null ? detail : `${detail}. ${untold}` });
+        }
     }
     else if (settings === 'unreadable') {
         steps.push({ file: SETTINGS, action: 'advise', detail: `cannot be read as JSON; add the guard as a PreToolUse and a PostToolUse hook by hand: ${JSON.stringify(GUARD_HOOK)}` });
     }
+    else if (array !== null) {
+        // A hook written into such a file would be one more that is not loaded:
+        // the matcher is the person's to mend, and init is run again after.
+        steps.push({ file: SETTINGS, action: 'advise', detail: `${describeArrayMatcher(SETTINGS, array)}, those init writes among them, so it writes none: ${ONE_STRING}, and run init again` });
+    }
     else {
         // An entry is a line of the hook where doctor reports its words as one in this file.
         const reported = new Set(lines.map((line) => JSON.stringify(line.line)));
-        const merged = mergeClaudeSettings(settings ?? {}, (words) => reported.has(JSON.stringify(words)));
+        const merged = mergeClaudeSettings(settings ?? {}, (words) => reported.has(JSON.stringify(words)), pattern, commasUnder(wiring.release));
         // A line that turns the guard off or holds every write is one doctor
         // fails, and lines of which none is waited on before a write are no
         // guard between them: left as they are, they are for the person to mend.
@@ -229,11 +298,19 @@ export async function plan(workspace, options, io) {
                 apply: () => writeAtomic(settingsFile, stringify(merged)),
             });
     }
+    // disableAllHooks turns off whatever hooks there are, and those init
+    // writes with them: said of the file that holds the key, which is the
+    // person's to change. init writes what it would have written.
+    if (wiring.hooksOff !== null)
+        steps.push({ file: wiring.hooksOff, action: 'advise', detail: describeHooksOff(wiring.hooksOff, guardSwitchedOff(wiring)) });
     const mcpFile = join(root, '.mcp.json');
     const mcp = await readJson(mcpFile);
     if (plugin !== null) {
         const present = registersServer(mcp);
-        steps.push({ file: '.mcp.json', action: present ? 'advise' : 'skip', detail: describeSkipped(plugin, 'server', present) });
+        if (absent !== null)
+            steps.push({ file: '.mcp.json', action: 'advise', detail: describeAbsent(plugin, absent, 'server', present) });
+        else
+            steps.push({ file: '.mcp.json', action: present ? 'advise' : 'skip', detail: describeSkipped(plugin, 'server', present) });
     }
     else if (mcp === 'unreadable') {
         steps.push({ file: '.mcp.json', action: 'advise', detail: 'cannot be read as JSON; add the spec-harness server by hand' });
@@ -254,7 +331,7 @@ export async function plan(workspace, options, io) {
     // a linked worktree's shared hooks. It is the guard for a write the agent's
     // hooks never see, one through a shell, so it is advised when not asked
     // for; it is configuration outside the tree, so it is written only then.
-    const { hook, path: hookFile, note: hookNote } = await gitHook(root);
+    const { hook, path: hookFile, note: hookNote } = answerOf(hookAsked);
     // Only a git older than 2.31, which the README states as the harness's
     // floor, cannot name its hooks, and init runs only in a work tree, where
     // any later git names them: no test reaches this advice, by that decision.
@@ -266,7 +343,9 @@ export async function plan(workspace, options, io) {
         // with the line that runs it as init writes the hook now.
         steps.push({ file: hook.file, action: 'keep', detail: hookNote === null ? 'already runs spec-harness' : `already runs spec-harness; ${hookNote}` });
     }
-    else if (hook.state === 'inert') {
+    else if (hook.state === 'inert' || hook.state === 'stops' || hook.state === 'ignored') {
+        // What is there is the person's to mend or to take away: nothing is
+        // written over it, and what doctor says of it is said.
         steps.push({ file: hook.file, action: 'advise', detail: describeGitHook(hook) });
     }
     else if (hook.state === 'other') {

package/dist/setup.js.map

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* `spec-harness init`: the family configured to agree, from the first day.\n *\n * The integration faults found when the tools were first run together were all\n * configuration: spec-graph read an archived brief as a retired decision and\n * reported every brief that depended on one; spec-guard executed an archived\n * brief's assertions. Each tool can be told the truth; `init` tells each of\n * them the same truth, derived from spec-brief's own settings.\n *\n * It prints a plan and changes nothing until `--write`. It merges into files\n * that exist and never replaces what a person wrote; a git hook the\n * repository already has is left alone, with the line to add printed instead.\n */\n\nimport { existsSync, statSync } from 'node:fs';\nimport { chmod, mkdir, readFile } from 'node:fs/promises';\nimport { dirname, isAbsolute, join, relative, sep } from 'node:path';\n\nimport { CONFIG_FILE } from './config.js';\nimport {\n  chooseBase,\n  describeGitHook,\n  describeGraph,\n  describeSkipped,\n  GIT_HOOK_LINE,\n  gitHookNote,\n  type GitHookState,\n  graphReadsBriefs,\n  GUARD_HOOK,\n  isStarted,\n  loadsPlugin,\n  measuresArchive,\n  mergeClaudeSettings,\n  mergeMcp,\n  mergeSpecBrief,\n  mergeSpecGraph,\n  missingGitHook,\n  PLUGIN,\n  PRE_COMMIT,\n  PROTECT_RULE_FILES,\n  registersServer,\n  SPEC_BRIEF_CONFIGS,\n  SPEC_GRAPH_CONFIGS,\n} from './configure.js';\nimport { readJsonObject as readJson, writeAtomic } from './fs.js';\nimport { hookPath, localBranches, remoteDefault } from './git.js';\nimport { claudeCodeWiring, pluginFile } from './round.js';\nimport { runSibling } from './siblings.js';\nimport { EXIT_ERROR, EXIT_OK, json, openWorkspace, type CliIO, type Options, type Workspace } from './workspace.js';\n\n/** `skip`: a file init would write, left alone because Claude Code's plugin brings what init would add. */\nexport type Action = 'create' | 'update' | 'keep' | 'skip' | 'run' | 'advise';\n\nexport interface Step {\n  readonly file: string;\n  readonly action: Action;\n  readonly detail: string;\n  apply?: () => Promise<void>;\n}\n\ntype Json = Record<string, unknown>;\n\n/** The project's settings file for Claude Code, as a person finds it and as doctor names it. */\nconst SETTINGS = '.claude/settings.json';\n\nfunction stringify(value: unknown): string {\n  return `${JSON.stringify(value, null, 2)}\\n`;\n}\n\nconst PLUGIN_DETAIL = `load spec-harness's plugin, \"${PLUGIN}\": spec-brief's archive asks it whether a signed ruling allows a protected file, and refuses the file without it`;\n\n/** What init adds to spec-brief's configuration, said once for the plan. */\nfunction specBriefDetail(plugin: boolean, base: string | null): string {\n  const parts = plugin ? [PLUGIN_DETAIL] : [];\n  if (base !== null) parts.push(`measure the archive from ${base}, as spec-harness does: without a base, spec-brief's archive warns that the scope went unmeasured and checks no protected file`);\n  return parts.join('; ');\n}\n\n/** A path as a person finds it: from the root when it is inside it, POSIX-separated, and as it is otherwise. */\nfunction shown(root: string, path: string): string {\n  const inside = relative(root, path);\n  return inside.startsWith('..') || isAbsolute(inside) ? path : inside.split(sep).join('/');\n}\n\n/**\n * git's pre-commit hook, where git runs it from, and what is there: init and\n * doctor both read it. `path` is `null` when git cannot say where its hooks\n * are. `note` is what there is to say of how a hook that runs the harness\n * runs it, or `null`.\n */\nexport async function gitHook(root: string): Promise<{ readonly hook: GitHookState; readonly path: string | null; readonly note: string | null }> {\n  const path = await hookPath('pre-commit', root);\n  if (path === null) return { hook: { state: 'unknown', reason: 'git does not say where they are; spec-harness needs git 2.31 or later' }, path, note: null };\n  const file = shown(root, path);\n  if (!existsSync(path)) return { hook: { state: 'absent', file }, path, note: null };\n  const text = await readFile(path, 'utf8');\n  if (!text.includes('spec-harness')) return { hook: { state: 'other', file }, path, note: null };\n  // git skips a hook it cannot execute, and says so only in a hint; Windows\n  // has no executable bit, and runs it.\n  // The Windows job holds the platform check; the sweep runs on Linux, where it is always true.\n  const inert = process.platform !== 'win32' && (statSync(path).mode & 0o111) === 0;\n  return { hook: { state: inert ? 'inert' : 'runs', file }, path, note: gitHookNote(text) };\n}\n\nexport async function plan(workspace: Workspace, options: Options, io: CliIO): Promise<Step[]> {\n  const { root } = workspace;\n  const steps: Step[] = [];\n\n  // The base rounds merge into, decided once: spec-harness verifies rulings\n  // against the allowed signers on it, and spec-brief's archive measures the\n  // round from it. A base a person wrote, in either file, is kept.\n  // openWorkspace loaded this file and refused one that is not a JSON object,\n  // so here it is one, or there is none.\n  const harnessFile = join(root, CONFIG_FILE);\n  const harness = (await readJson(harnessFile)) as Json | null;\n  const namedBase = harness !== null && typeof harness['base'] === 'string' ? harness['base'] : null;\n  const choice = namedBase === null ? chooseBase({ remoteDefault: await remoteDefault(root), branch: workspace.branch, branches: await localBranches(root) }) : null;\n  const base = choice === null ? namedBase : choice.base;\n\n  // spec-brief first: every other setting is derived from its directories.\n  const briefConfig = SPEC_BRIEF_CONFIGS.find((name) => existsSync(join(root, name)));\n  const brief = workspace.siblings.locate('spec-brief');\n  let briefs = 'briefs';\n  let archive = 'briefs/archive';\n  if (briefConfig === undefined) {\n    if (brief.kind === 'found') {\n      const command = brief.command;\n      const created = join(root, '.spec-brief.json');\n      steps.push({\n        file: '.spec-brief.json',\n        action: 'run',\n        detail: 'spec-brief init: the brief and archive directories, every default spelled out',\n        apply: async () => {\n          const run = await runSibling(command, ['init'], root);\n          if (run.code !== 0) throw new Error(`spec-brief init failed: ${run.stderr.trim()}`);\n        },\n      });\n      steps.push({\n        file: '.spec-brief.json',\n        action: 'update',\n        detail: specBriefDetail(true, base),\n        apply: async () => {\n          const written = await readJson(created);\n          if (written === null || written === 'unreadable') throw new Error('spec-brief init wrote no configuration JSON can read');\n          const merged = mergeSpecBrief(written, base, pluginFile(root));\n          if (merged !== null) await writeAtomic(created, stringify(merged));\n        },\n      });\n    } else {\n      steps.push({ file: '.spec-brief.json', action: 'advise', detail: brief.reason });\n    }\n  } else {\n    const file = join(root, briefConfig);\n    const config = await readJson(file);\n    // The file was found a moment ago, so null is one removed in between; and\n    // a string has neither key, so these checks are there for the type.\n    if (config !== null && config !== 'unreadable') {\n      if (typeof config['briefs'] === 'string') briefs = config['briefs'];\n      archive = typeof config['archive'] === 'string' ? config['archive'] : `${briefs}/archive`;\n    }\n    steps.push({ file: briefConfig, action: 'keep', detail: `briefs in ${briefs}/, the archive in ${archive}/` });\n    // spec-brief's archive learns that a signed ruling allows a protected file\n    // only from this package's plugin (ADR-0006).\n    if (config === 'unreadable' || config === null) {\n      const measure = base === null ? '' : `, and \"archiving\": { \"base\": \"${base}\" }`;\n      steps.push({ file: briefConfig, action: 'advise', detail: `cannot be read as JSON; add \"plugins\": [\"${PLUGIN}\"]${measure} by hand` });\n    } else {\n      const isPluginFile = pluginFile(root);\n      const merged = mergeSpecBrief(config, base, isPluginFile);\n      const measured = measuresArchive(config);\n      if (merged === null) {\n        const archiving = config['archiving'];\n        const from = measured ? `, and the archive is measured from ${String((archiving as Json)['base'])}` : '';\n        steps.push({ file: briefConfig, action: 'keep', detail: `spec-harness's plugin is loaded${from}` });\n      } else {\n        const detail = specBriefDetail(!loadsPlugin(config, isPluginFile), measured ? null : base);\n        steps.push({ file: briefConfig, action: 'update', detail, apply: () => writeAtomic(file, stringify(merged)) });\n      }\n    }\n  }\n\n  // spec-graph: an archived brief is a record, not a retired decision. Its\n  // configuration is the first of its files, then a key in package.json; a\n  // file written beside that key would shadow it.\n  const graph = workspace.siblings.locate('spec-graph');\n  if (graph.kind === 'outdated') steps.push({ file: '.spec-graph.json', action: 'advise', detail: graph.reason });\n  if (graph.kind === 'found') {\n    const archiveGlob = `${archive}/**`;\n    const graphName = SPEC_GRAPH_CONFIGS.find((name) => existsSync(join(root, name)));\n    const manifest = graphName === undefined ? await readJson(join(root, 'package.json')) : null;\n    if (manifest !== null && manifest !== 'unreadable' && 'spec-graph' in manifest) {\n      steps.push({ file: 'package.json', action: 'advise', detail: `spec-graph reads its configuration from the \"spec-graph\" key here, which init does not edit: add \"${archiveGlob}\" to its \"historyPatterns\" by hand` });\n    } else {\n      const file = graphName ?? '.spec-graph.json';\n      const current = await readJson(join(root, file));\n      if (current === 'unreadable') {\n        steps.push({ file, action: 'advise', detail: `cannot be read as JSON; add \"historyPatterns\": [\"${archiveGlob}\"] by hand` });\n      } else {\n        const merged = mergeSpecGraph(current ?? {}, archiveGlob);\n        const detail = describeGraph(archiveGlob, briefs, graphReadsBriefs(current ?? {}, briefs), merged !== null);\n        if (merged === null) steps.push({ file, action: 'keep', detail });\n        else steps.push({ file, action: current === null ? 'create' : 'update', detail, apply: () => writeAtomic(join(root, file), stringify(merged)) });\n      }\n    }\n  }\n\n  // spec-harness's own file, naming the base the rounds merge into: every\n  // ruling is verified against the allowed signers on it. No choice was made\n  // only where the file names a base.\n  if (choice === null) {\n    steps.push({ file: CONFIG_FILE, action: 'keep', detail: `rounds are measured from ${namedBase}` });\n  } else if (choice.base === null) {\n    steps.push({ file: CONFIG_FILE, action: 'advise', detail: choice.detail });\n  } else {\n    const content: Json = { ...harness, base: choice.base };\n    steps.push({ file: CONFIG_FILE, action: harness === null ? 'create' : 'update', detail: choice.detail, apply: () => writeAtomic(harnessFile, stringify(content)) });\n  }\n\n  // The agent's hooks and server, unless the plugin brings them: Claude Code\n  // runs a plugin's hook beside the same hook in settings, so both would\n  // guard every write twice (ADR-0012). The hook's lines are known as doctor\n  // knows them, by the hook's own reading and by the writes Claude Code\n  // starts each for, so that the two say the same of every file (ADR-0005).\n  const wiring = await claudeCodeWiring(root, io);\n  const { plugin } = wiring;\n  const settingsFile = join(root, '.claude', 'settings.json');\n  const settings = await readJson(settingsFile);\n  const lines = wiring.lines.filter((line) => line.file === SETTINGS);\n  // What doctor says of a line this file holds is said here too, with why\n  // init leaves the line: one a person changed is theirs, and a second line\n  // beside one that is started would run for every write as well.\n  const said = lines.flatMap((line) => [line.detail, line.cover]).filter((note): note is string => note !== null);\n  const left = said.length === 0 ? '' : `${said.join('; ')}; init rewrites no line of the hook it did not write, and writes none beside one Claude Code starts for a write`;\n  if (plugin !== null) {\n    // Doubled in this file or in one of the person's own, it is the double\n    // install doctor fails: said here too, though init writes neither file.\n    // This file's own entry is said first, so the others are named only\n    // where it holds none.\n    const present = wiring.hooks.includes(SETTINGS);\n    steps.push({ file: SETTINGS, action: wiring.hooks.length > 0 ? 'advise' : 'skip', detail: describeSkipped(plugin, 'hooks', present, wiring.hooks) });\n  } else if (settings === 'unreadable') {\n    steps.push({ file: SETTINGS, action: 'advise', detail: `cannot be read as JSON; add the guard as a PreToolUse and a PostToolUse hook by hand: ${JSON.stringify(GUARD_HOOK)}` });\n  } else {\n    // An entry is a line of the hook where doctor reports its words as one in this file.\n    const reported = new Set(lines.map((line) => JSON.stringify(line.line)));\n    const merged = mergeClaudeSettings(settings ?? {}, (words) => reported.has(JSON.stringify(words)));\n    // A line that turns the guard off or holds every write is one doctor\n    // fails, and lines of which none is waited on before a write are no\n    // guard between them: left as they are, they are for the person to mend.\n    const broken = lines.some((line) => line.state === 'off' || line.state === 'held') || !lines.some((line) => isStarted(line.before));\n    if (merged === null) steps.push({ file: SETTINGS, action: broken ? 'advise' : 'keep', detail: left === '' ? 'the guard hooks are installed' : left });\n    else\n      steps.push({\n        file: SETTINGS,\n        action: settings === null ? 'create' : 'update',\n        detail: `the guard hooks, run with node from the project's install: a PreToolUse hook refuses writes to protected files; a PostToolUse hook warns about writes outside the scope${left === '' ? '' : `; ${left}`}`,\n        apply: () => writeAtomic(settingsFile, stringify(merged)),\n      });\n  }\n  const mcpFile = join(root, '.mcp.json');\n  const mcp = await readJson(mcpFile);\n  if (plugin !== null) {\n    const present = registersServer(mcp);\n    steps.push({ file: '.mcp.json', action: present ? 'advise' : 'skip', detail: describeSkipped(plugin, 'server', present) });\n  } else if (mcp === 'unreadable') {\n    steps.push({ file: '.mcp.json', action: 'advise', detail: 'cannot be read as JSON; add the spec-harness server by hand' });\n  } else {\n    const merged = mergeMcp(mcp ?? {});\n    if (merged === null) steps.push({ file: '.mcp.json', action: 'keep', detail: 'the spec-harness server is registered' });\n    else\n      steps.push({\n        file: '.mcp.json',\n        action: mcp === null ? 'create' : 'update',\n        detail: 'the spec-harness MCP server, run with node from the project\\'s install: start_round, check_path, request_escalation, audit_round, list_rounds',\n        apply: () => writeAtomic(mcpFile, stringify(merged)),\n      });\n  }\n\n  // git's hook, where git runs it from: core.hooksPath as git reads it, and\n  // a linked worktree's shared hooks. It is the guard for a write the agent's\n  // hooks never see, one through a shell, so it is advised when not asked\n  // for; it is configuration outside the tree, so it is written only then.\n  const { hook, path: hookFile, note: hookNote } = await gitHook(root);\n  // Only a git older than 2.31, which the README states as the harness's\n  // floor, cannot name its hooks, and init runs only in a work tree, where\n  // any later git names them: no test reaches this advice, by that decision.\n  if (hook.state === 'unknown' || hookFile === null) {\n    steps.push({ file: 'pre-commit', action: 'advise', detail: describeGitHook(hook) });\n  } else if (hook.state === 'runs') {\n    // A hook that runs it through npx is kept, as any hook that exists is,\n    // with the line that runs it as init writes the hook now.\n    steps.push({ file: hook.file, action: 'keep', detail: hookNote === null ? 'already runs spec-harness' : `already runs spec-harness; ${hookNote}` });\n  } else if (hook.state === 'inert') {\n    steps.push({ file: hook.file, action: 'advise', detail: describeGitHook(hook) });\n  } else if (hook.state === 'other') {\n    steps.push({ file: hook.file, action: 'advise', detail: `a pre-commit hook exists; add the line \"${GIT_HOOK_LINE}\" to it` });\n  } else if (options.gitHook) {\n    steps.push({\n      file: hook.file,\n      action: 'create',\n      detail: 'refuse a commit that changes what the active brief protects',\n      apply: async () => {\n        await mkdir(dirname(hookFile), { recursive: true });\n        await writeAtomic(hookFile, PRE_COMMIT);\n        await chmod(hookFile, 0o755);\n      },\n    });\n  } else {\n    steps.push({ file: hook.file, action: 'advise', detail: missingGitHook(null) });\n  }\n\n  // The file the configuration names, which a ruling's signature is checked\n  // against on the base branch (ADR-0006).\n  steps.push({\n    file: workspace.config.rulings.allowedSigners,\n    action: 'advise',\n    detail: `rulings count only when signed by a key listed here on the base branch: one line per person, <email> namespaces=\"git\" <public key>. Where an agent runs as the person, make it a FIDO2 key, ssh-keygen -t ed25519-sk, whose signature needs a touch no process can supply. ${PROTECT_RULE_FILES}`,\n  });\n  return steps;\n}\n\nexport async function initCommand(options: Options, io: CliIO): Promise<number> {\n  const workspace = await openWorkspace(options, io);\n  const steps = await plan(workspace, options, io);\n  if (options.write) {\n    for (const step of steps) {\n      if (step.apply !== undefined) {\n        try {\n          await step.apply();\n        } catch (error) {\n          io.stderr.write(`spec-harness: ${step.file}: ${(error as Error).message}\\n`);\n          return EXIT_ERROR;\n        }\n      }\n    }\n  }\n  if (options.format === 'json') {\n    io.stdout.write(json('init', { written: options.write, steps: steps.map(({ file, action, detail }) => ({ file, action, detail })) }));\n  } else {\n    for (const step of steps) io.stdout.write(`${step.action.padEnd(6)}  ${step.file}\\n        ${step.detail}\\n`);\n    if (!options.write && steps.some((step) => step.apply !== undefined)) io.stdout.write('\\nNothing was changed. Run again with --write to apply the plan.\\n');\n  }\n  return EXIT_OK;\n}\n"]}
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* `spec-harness init`: the family configured to agree, from the first day.\n *\n * The integration faults found when the tools were first run together were all\n * configuration: spec-graph read an archived brief as a retired decision and\n * reported every brief that depended on one; spec-guard executed an archived\n * brief's assertions. Each tool can be told the truth; `init` tells each of\n * them the same truth, derived from spec-brief's own settings.\n *\n * It prints a plan and changes nothing until `--write`. It merges into files\n * that exist and never replaces what a person wrote; a git hook the\n * repository already has is left alone, with the line to add printed instead.\n */\n\nimport { accessSync, constants, existsSync, statSync, type Stats } from 'node:fs';\nimport { chmod, mkdir, readFile } from 'node:fs/promises';\nimport { dirname, isAbsolute, join, relative, sep } from 'node:path';\n\nimport { CONFIG_FILE } from './config.js';\nimport {\n  arrayMatcher,\n  chooseBase,\n  commasUnder,\n  describeAbsent,\n  describeArrayMatcher,\n  describeGitHook,\n  describeGraph,\n  describeHooksOff,\n  describePresence,\n  describeSkipped,\n  GIT_HOOK_LINE,\n  gitHookNote,\n  type GitHookState,\n  graphReadsBriefs,\n  GUARD_HOOK,\n  guardSwitchedOff,\n  isStarted,\n  loadsPlugin,\n  measuresArchive,\n  mergeClaudeSettings,\n  mergeMcp,\n  mergeSpecBrief,\n  mergeSpecGraph,\n  missingGitHook,\n  ONE_STRING,\n  patternReader,\n  PLUGIN,\n  PRE_COMMIT,\n  PROJECT_SETTINGS,\n  PROTECT_RULE_FILES,\n  registersServer,\n  SPEC_BRIEF_CONFIGS,\n  SPEC_GRAPH_CONFIGS,\n} from './configure.js';\nimport { readJsonObject as readJson, writeAtomic } from './fs.js';\nimport { hookPath, localBranches, remoteDefault } from './git.js';\nimport { claudeCodeWiring, pluginFile } from './round.js';\nimport { runSibling } from './siblings.js';\nimport { answerOf, EXIT_ERROR, EXIT_OK, json, openWorkspace, type CliIO, type Options, type Workspace } from './workspace.js';\n\n/** `skip`: a file init would write, left alone because Claude Code's plugin brings what init would add. */\nexport type Action = 'create' | 'update' | 'keep' | 'skip' | 'run' | 'advise';\n\nexport interface Step {\n  readonly file: string;\n  readonly action: Action;\n  readonly detail: string;\n  apply?: () => Promise<void>;\n}\n\ntype Json = Record<string, unknown>;\n\n/** The project's settings file for Claude Code, as a person finds it and as doctor names it. */\nconst SETTINGS = PROJECT_SETTINGS;\n\nfunction stringify(value: unknown): string {\n  return `${JSON.stringify(value, null, 2)}\\n`;\n}\n\nconst PLUGIN_DETAIL = `load spec-harness's plugin, \"${PLUGIN}\": spec-brief's archive asks it whether a signed ruling allows a protected file, and refuses the file without it`;\n\n/** What init adds to spec-brief's configuration, said once for the plan. */\nfunction specBriefDetail(plugin: boolean, base: string | null): string {\n  const parts = plugin ? [PLUGIN_DETAIL] : [];\n  if (base !== null) parts.push(`measure the archive from ${base}, as spec-harness does: without a base, spec-brief's archive warns that the scope went unmeasured and checks no protected file`);\n  return parts.join('; ');\n}\n\n/** A path as a person finds it: from the root when it is inside it, POSIX-separated, and as it is otherwise. */\nfunction shown(root: string, path: string): string {\n  const inside = relative(root, path);\n  return inside.startsWith('..') || isAbsolute(inside) ? path : inside.split(sep).join('/');\n}\n\n/**\n * Whether git takes what stands at a hook's path for a hook to run. git\n * asks the system whether the path can be executed, and skips one that\n * cannot, with no more than a hint: asked here the same way. On Windows the\n * question is only whether the path is there (Node's fs page, File access\n * constants, read 2026-10-14), and git there runs whatever is.\n */\nfunction executable(path: string): boolean {\n  let may = true;\n  try {\n    accessSync(path, constants.X_OK);\n  } catch {\n    may = false;\n  }\n  return may;\n}\n\n/** What stands at a path, links followed, or `null` where nothing does: a link to nothing is nothing, to git as well. */\nfunction standing(path: string): Stats | null {\n  try {\n    return statSync(path);\n  } catch {\n    return null;\n  }\n}\n\n/**\n * git's pre-commit hook, where git runs it from, and what is there: init and\n * doctor both read it. `path` is `null` when git cannot say where its hooks\n * are. `note` is what there is to say of how a hook that runs the harness\n * runs it, or `null`.\n *\n * Only a file is read. A directory under the hook's name, which a\n * repository whose `core.hooksPath` is in its work tree can hold, is not a\n * hook and is one to git all the same: it tries to run what it can execute\n * there, fails, and stops the commit (ADR-0005 has what was measured). Read\n * as a file, it ended this on Node's EISDIR and a stack, and a named pipe\n * would have kept it from ever coming back.\n */\nexport async function gitHook(root: string): Promise<{ readonly hook: GitHookState; readonly path: string | null; readonly note: string | null }> {\n  const path = await hookPath('pre-commit', root);\n  if (path === null) return { hook: { state: 'unknown', reason: 'git does not say where they are; spec-harness needs git 2.31 or later' }, path, note: null };\n  const file = shown(root, path);\n  const there = standing(path);\n  if (there === null) return { hook: { state: 'absent', file }, path, note: null };\n  const runs = executable(path);\n  if (!there.isFile()) {\n    const what = there.isDirectory() ? 'a directory' : 'neither a file nor a directory';\n    return { hook: { state: runs ? 'stops' : 'ignored', file, what }, path, note: null };\n  }\n  const text = await readFile(path, 'utf8');\n  if (!text.includes('spec-harness')) return { hook: { state: 'other', file }, path, note: null };\n  return { hook: { state: runs ? 'runs' : 'inert', file }, path, note: gitHookNote(text) };\n}\n\nexport async function plan(workspace: Workspace, options: Options, io: CliIO): Promise<Step[]> {\n  const { root } = workspace;\n  const steps: Step[] = [];\n\n  // The base rounds merge into, decided once: spec-harness verifies rulings\n  // against the allowed signers on it, and spec-brief's archive measures the\n  // round from it. A base a person wrote, in either file, is kept.\n  // openWorkspace loaded this file and refused one that is not a JSON object,\n  // so here it is one, or there is none.\n  const harnessFile = join(root, CONFIG_FILE);\n  const harness = (await readJson(harnessFile)) as Json | null;\n  const namedBase = harness !== null && typeof harness['base'] === 'string' ? harness['base'] : null;\n  // What the plan asks of git and of Claude Code's settings waits on the\n  // root and on nothing of the rest, so it is asked at once: three of git's\n  // processes side by side where each waited on the one before. Each is\n  // read below where it was asked before, so a plan that fails still fails\n  // on the first of them in that order. The matchers in the settings are\n  // read with one reader, for the wiring and for what to write. Claude\n  // Code's release is asked only where what is read of a line turns on it.\n  const pattern = patternReader();\n  const [factsAsked, wiringAsked, hookAsked] = await Promise.allSettled([\n    namedBase === null ? Promise.all([remoteDefault(root), localBranches(root)]) : null,\n    claudeCodeWiring(root, io, pattern, false),\n    gitHook(root),\n  ]);\n  const facts = answerOf(factsAsked);\n  const choice = facts === null ? null : chooseBase({ remoteDefault: facts[0], branch: workspace.branch, branches: facts[1] });\n  const base = choice === null ? namedBase : choice.base;\n\n  // spec-brief first: every other setting is derived from its directories.\n  const briefConfig = SPEC_BRIEF_CONFIGS.find((name) => existsSync(join(root, name)));\n  const brief = workspace.siblings.locate('spec-brief');\n  let briefs = 'briefs';\n  let archive = 'briefs/archive';\n  if (briefConfig === undefined) {\n    if (brief.kind === 'found') {\n      const command = brief.command;\n      const created = join(root, '.spec-brief.json');\n      steps.push({\n        file: '.spec-brief.json',\n        action: 'run',\n        detail: 'spec-brief init: the brief and archive directories, every default spelled out',\n        apply: async () => {\n          const run = await runSibling(command, ['init'], root);\n          if (run.code !== 0) throw new Error(`spec-brief init failed: ${run.stderr.trim()}`);\n        },\n      });\n      steps.push({\n        file: '.spec-brief.json',\n        action: 'update',\n        detail: specBriefDetail(true, base),\n        apply: async () => {\n          const written = await readJson(created);\n          if (written === null || written === 'unreadable') throw new Error('spec-brief init wrote no configuration JSON can read');\n          const merged = mergeSpecBrief(written, base, pluginFile(root));\n          if (merged !== null) await writeAtomic(created, stringify(merged));\n        },\n      });\n    } else {\n      steps.push({ file: '.spec-brief.json', action: 'advise', detail: brief.reason });\n    }\n  } else {\n    const file = join(root, briefConfig);\n    const config = await readJson(file);\n    // The file was found a moment ago, so null is one removed in between; and\n    // a string has neither key, so these checks are there for the type.\n    if (config !== null && config !== 'unreadable') {\n      if (typeof config['briefs'] === 'string') briefs = config['briefs'];\n      archive = typeof config['archive'] === 'string' ? config['archive'] : `${briefs}/archive`;\n    }\n    steps.push({ file: briefConfig, action: 'keep', detail: `briefs in ${briefs}/, the archive in ${archive}/` });\n    // spec-brief's archive learns that a signed ruling allows a protected file\n    // only from this package's plugin (ADR-0006).\n    if (config === 'unreadable' || config === null) {\n      const measure = base === null ? '' : `, and \"archiving\": { \"base\": \"${base}\" }`;\n      steps.push({ file: briefConfig, action: 'advise', detail: `cannot be read as JSON; add \"plugins\": [\"${PLUGIN}\"]${measure} by hand` });\n    } else {\n      const isPluginFile = pluginFile(root);\n      const merged = mergeSpecBrief(config, base, isPluginFile);\n      const measured = measuresArchive(config);\n      if (merged === null) {\n        const archiving = config['archiving'];\n        const from = measured ? `, and the archive is measured from ${String((archiving as Json)['base'])}` : '';\n        steps.push({ file: briefConfig, action: 'keep', detail: `spec-harness's plugin is loaded${from}` });\n      } else {\n        const detail = specBriefDetail(!loadsPlugin(config, isPluginFile), measured ? null : base);\n        steps.push({ file: briefConfig, action: 'update', detail, apply: () => writeAtomic(file, stringify(merged)) });\n      }\n    }\n  }\n\n  // spec-graph: an archived brief is a record, not a retired decision. Its\n  // configuration is the first of its files, then a key in package.json; a\n  // file written beside that key would shadow it.\n  const graph = workspace.siblings.locate('spec-graph');\n  if (graph.kind === 'outdated') steps.push({ file: '.spec-graph.json', action: 'advise', detail: graph.reason });\n  if (graph.kind === 'found') {\n    const archiveGlob = `${archive}/**`;\n    const graphName = SPEC_GRAPH_CONFIGS.find((name) => existsSync(join(root, name)));\n    const manifest = graphName === undefined ? await readJson(join(root, 'package.json')) : null;\n    if (manifest !== null && manifest !== 'unreadable' && 'spec-graph' in manifest) {\n      steps.push({ file: 'package.json', action: 'advise', detail: `spec-graph reads its configuration from the \"spec-graph\" key here, which init does not edit: add \"${archiveGlob}\" to its \"historyPatterns\" by hand` });\n    } else {\n      const file = graphName ?? '.spec-graph.json';\n      const current = await readJson(join(root, file));\n      if (current === 'unreadable') {\n        steps.push({ file, action: 'advise', detail: `cannot be read as JSON; add \"historyPatterns\": [\"${archiveGlob}\"] by hand` });\n      } else {\n        const merged = mergeSpecGraph(current ?? {}, archiveGlob);\n        const detail = describeGraph(archiveGlob, briefs, graphReadsBriefs(current ?? {}, briefs), merged !== null);\n        if (merged === null) steps.push({ file, action: 'keep', detail });\n        else steps.push({ file, action: current === null ? 'create' : 'update', detail, apply: () => writeAtomic(join(root, file), stringify(merged)) });\n      }\n    }\n  }\n\n  // spec-harness's own file, naming the base the rounds merge into: every\n  // ruling is verified against the allowed signers on it. No choice was made\n  // only where the file names a base.\n  if (choice === null) {\n    steps.push({ file: CONFIG_FILE, action: 'keep', detail: `rounds are measured from ${namedBase}` });\n  } else if (choice.base === null) {\n    steps.push({ file: CONFIG_FILE, action: 'advise', detail: choice.detail });\n  } else {\n    const content: Json = { ...harness, base: choice.base };\n    steps.push({ file: CONFIG_FILE, action: harness === null ? 'create' : 'update', detail: choice.detail, apply: () => writeAtomic(harnessFile, stringify(content)) });\n  }\n\n  // The agent's hooks and server, unless the plugin brings them: Claude Code\n  // runs a plugin's hook beside the same hook in settings, so both would\n  // guard every write twice (ADR-0012). The hook's lines are known as doctor\n  // knows them, by the hook's own reading and by the writes Claude Code\n  // starts each for, so that the two say the same of every file (ADR-0005).\n  const wiring = answerOf(wiringAsked);\n  const { plugin } = wiring;\n  // A plugin that is not on this machine brings neither. init writes none\n  // on that reading alone, which a plugin that is there after all would\n  // make a second guard: it says what doctor says, and how to have the\n  // entries here instead.\n  const absent = wiring.presence?.state === 'absent' ? wiring.presence.detail : null;\n  const settingsFile = join(root, '.claude', 'settings.json');\n  const settings = await readJson(settingsFile);\n  // An array for a matcher, under which Claude Code loads no hook of the file.\n  const array = arrayMatcher(settings);\n  const lines = wiring.lines.filter((line) => line.file === SETTINGS);\n  // What doctor says of a line this file holds is said here too, with why\n  // init leaves the line: one a person changed is theirs, and a second line\n  // beside one that is started would run for every write as well.\n  const said = lines.flatMap((line) => [line.detail, line.cover]).filter((note): note is string => note !== null);\n  const left = said.length === 0 ? '' : `${said.join('; ')}; init rewrites no line of the hook it did not write, and writes none beside one Claude Code starts for a write`;\n  if (plugin !== null) {\n    // Doubled in this file or in one of the person's own, it is the double\n    // install doctor fails: said here too, though init writes neither file.\n    // This file's own entry is said first, so the others are named only\n    // where it holds none.\n    const present = wiring.hooks.includes(SETTINGS);\n    if (absent !== null) steps.push({ file: SETTINGS, action: 'advise', detail: describeAbsent(plugin, absent, 'hooks', present) });\n    else {\n      // A plugin that cannot be told to be on this machine is no reason to\n      // write either: said beside the reason, as doctor says it.\n      const untold = describePresence(wiring);\n      const detail = describeSkipped(plugin, 'hooks', present, wiring.hooks);\n      steps.push({ file: SETTINGS, action: wiring.hooks.length > 0 ? 'advise' : 'skip', detail: untold === null ? detail : `${detail}. ${untold}` });\n    }\n  } else if (settings === 'unreadable') {\n    steps.push({ file: SETTINGS, action: 'advise', detail: `cannot be read as JSON; add the guard as a PreToolUse and a PostToolUse hook by hand: ${JSON.stringify(GUARD_HOOK)}` });\n  } else if (array !== null) {\n    // A hook written into such a file would be one more that is not loaded:\n    // the matcher is the person's to mend, and init is run again after.\n    steps.push({ file: SETTINGS, action: 'advise', detail: `${describeArrayMatcher(SETTINGS, array)}, those init writes among them, so it writes none: ${ONE_STRING}, and run init again` });\n  } else {\n    // An entry is a line of the hook where doctor reports its words as one in this file.\n    const reported = new Set(lines.map((line) => JSON.stringify(line.line)));\n    const merged = mergeClaudeSettings(settings ?? {}, (words) => reported.has(JSON.stringify(words)), pattern, commasUnder(wiring.release));\n    // A line that turns the guard off or holds every write is one doctor\n    // fails, and lines of which none is waited on before a write are no\n    // guard between them: left as they are, they are for the person to mend.\n    const broken = lines.some((line) => line.state === 'off' || line.state === 'held') || !lines.some((line) => isStarted(line.before));\n    if (merged === null) steps.push({ file: SETTINGS, action: broken ? 'advise' : 'keep', detail: left === '' ? 'the guard hooks are installed' : left });\n    else\n      steps.push({\n        file: SETTINGS,\n        action: settings === null ? 'create' : 'update',\n        detail: `the guard hooks, run with node from the project's install: a PreToolUse hook refuses writes to protected files; a PostToolUse hook warns about writes outside the scope${left === '' ? '' : `; ${left}`}`,\n        apply: () => writeAtomic(settingsFile, stringify(merged)),\n      });\n  }\n  // disableAllHooks turns off whatever hooks there are, and those init\n  // writes with them: said of the file that holds the key, which is the\n  // person's to change. init writes what it would have written.\n  if (wiring.hooksOff !== null) steps.push({ file: wiring.hooksOff, action: 'advise', detail: describeHooksOff(wiring.hooksOff, guardSwitchedOff(wiring)) });\n  const mcpFile = join(root, '.mcp.json');\n  const mcp = await readJson(mcpFile);\n  if (plugin !== null) {\n    const present = registersServer(mcp);\n    if (absent !== null) steps.push({ file: '.mcp.json', action: 'advise', detail: describeAbsent(plugin, absent, 'server', present) });\n    else steps.push({ file: '.mcp.json', action: present ? 'advise' : 'skip', detail: describeSkipped(plugin, 'server', present) });\n  } else if (mcp === 'unreadable') {\n    steps.push({ file: '.mcp.json', action: 'advise', detail: 'cannot be read as JSON; add the spec-harness server by hand' });\n  } else {\n    const merged = mergeMcp(mcp ?? {});\n    if (merged === null) steps.push({ file: '.mcp.json', action: 'keep', detail: 'the spec-harness server is registered' });\n    else\n      steps.push({\n        file: '.mcp.json',\n        action: mcp === null ? 'create' : 'update',\n        detail: 'the spec-harness MCP server, run with node from the project\\'s install: start_round, check_path, request_escalation, audit_round, list_rounds',\n        apply: () => writeAtomic(mcpFile, stringify(merged)),\n      });\n  }\n\n  // git's hook, where git runs it from: core.hooksPath as git reads it, and\n  // a linked worktree's shared hooks. It is the guard for a write the agent's\n  // hooks never see, one through a shell, so it is advised when not asked\n  // for; it is configuration outside the tree, so it is written only then.\n  const { hook, path: hookFile, note: hookNote } = answerOf(hookAsked);\n  // Only a git older than 2.31, which the README states as the harness's\n  // floor, cannot name its hooks, and init runs only in a work tree, where\n  // any later git names them: no test reaches this advice, by that decision.\n  if (hook.state === 'unknown' || hookFile === null) {\n    steps.push({ file: 'pre-commit', action: 'advise', detail: describeGitHook(hook) });\n  } else if (hook.state === 'runs') {\n    // A hook that runs it through npx is kept, as any hook that exists is,\n    // with the line that runs it as init writes the hook now.\n    steps.push({ file: hook.file, action: 'keep', detail: hookNote === null ? 'already runs spec-harness' : `already runs spec-harness; ${hookNote}` });\n  } else if (hook.state === 'inert' || hook.state === 'stops' || hook.state === 'ignored') {\n    // What is there is the person's to mend or to take away: nothing is\n    // written over it, and what doctor says of it is said.\n    steps.push({ file: hook.file, action: 'advise', detail: describeGitHook(hook) });\n  } else if (hook.state === 'other') {\n    steps.push({ file: hook.file, action: 'advise', detail: `a pre-commit hook exists; add the line \"${GIT_HOOK_LINE}\" to it` });\n  } else if (options.gitHook) {\n    steps.push({\n      file: hook.file,\n      action: 'create',\n      detail: 'refuse a commit that changes what the active brief protects',\n      apply: async () => {\n        await mkdir(dirname(hookFile), { recursive: true });\n        await writeAtomic(hookFile, PRE_COMMIT);\n        await chmod(hookFile, 0o755);\n      },\n    });\n  } else {\n    steps.push({ file: hook.file, action: 'advise', detail: missingGitHook(null) });\n  }\n\n  // The file the configuration names, which a ruling's signature is checked\n  // against on the base branch (ADR-0006).\n  steps.push({\n    file: workspace.config.rulings.allowedSigners,\n    action: 'advise',\n    detail: `rulings count only when signed by a key listed here on the base branch: one line per person, <email> namespaces=\"git\" <public key>. Where an agent runs as the person, make it a FIDO2 key, ssh-keygen -t ed25519-sk, whose signature needs a touch no process can supply. ${PROTECT_RULE_FILES}`,\n  });\n  return steps;\n}\n\nexport async function initCommand(options: Options, io: CliIO): Promise<number> {\n  const workspace = await openWorkspace(options, io);\n  const steps = await plan(workspace, options, io);\n  if (options.write) {\n    for (const step of steps) {\n      if (step.apply !== undefined) {\n        try {\n          await step.apply();\n        } catch (error) {\n          io.stderr.write(`spec-harness: ${step.file}: ${(error as Error).message}\\n`);\n          return EXIT_ERROR;\n        }\n      }\n    }\n  }\n  if (options.format === 'json') {\n    io.stdout.write(json('init', { written: options.write, steps: steps.map(({ file, action, detail }) => ({ file, action, detail })) }));\n  } else {\n    for (const step of steps) io.stdout.write(`${step.action.padEnd(6)}  ${step.file}\\n        ${step.detail}\\n`);\n    if (!options.write && steps.some((step) => step.apply !== undefined)) io.stdout.write('\\nNothing was changed. Run again with --write to apply the plan.\\n');\n  }\n  return EXIT_OK;\n}\n"]}

package/dist/usage.d.ts

@@ -247,10 +247,41 @@ export interface Guards {
      * line names none.
      */
     readonly brief?: string;
+    /**
+     * The work tree the root is in, where that is not the project's own and
+     * holds it: the hook opens the work tree its root is in, so a write to a
+     * file of the project is checked there, by that work tree's briefs, under
+     * the path the file has in it. Only git can tell, so the caller asks it.
+     * Absent where the line gives no root, or one in the project's work tree.
+     */
+    readonly holder?: OtherTree & {
+        readonly path: string;
+    };
+}
+/** A work tree the root on the hook's line is in that is not the project's own. */
+export interface OtherTree {
+    /** Its top, as git names it. */
+    readonly top: string;
+    /** Whether it is a work tree of the project's own repository, linked or main, where it is otherwise another repository's. */
+    readonly ours: boolean;
 }
+/** How such a work tree is named: by its top, and whose it is. */
+export declare function namedTree({ top, ours }: OtherTree): string;
 export interface GuardOff {
     readonly state: 'off';
     readonly fault: LineFault;
+    /**
+     * Set where the hook says nothing of the fault and exits 0, so that no
+     * run of it fails: a root outside any work tree, or in a work tree that
+     * does not hold the project. Every other fault it says, with exit 1.
+     */
+    readonly silent?: true;
+    /**
+     * What goes unchecked, where that is not every write: under a root in a
+     * work tree that does not hold the project, the hook checks a write to a
+     * file of that work tree, and none to a file of the project.
+     */
+    readonly unchecked?: string;
 }
 export interface WritesHeld {
     readonly state: 'held';
@@ -280,6 +311,34 @@ export declare function unreadHookLine(said: string): GuardOff;
  * someone had configured was off.
  */
 export declare function readHookLine(root: string | undefined, cwd: string, isDirectory: (path: string) => boolean): Guards | GuardOff;
+/**
+ * A line whose root is a directory outside any git work tree. The hook
+ * reads that as a session outside one, where it has nothing to guard: it
+ * checks no write and says nothing, exit 0 (ADR-0005), and that stays. Only
+ * git can tell such a root, so the caller asks it. A line that carries one
+ * is a guard someone set up that checks nothing, and `doctor` says it as
+ * off.
+ */
+export declare function outsideHookLine(root: string): GuardOff;
+/**
+ * A line whose root is in a git work tree that does not hold the project:
+ * another repository beside it, or a work tree inside it, a repository of
+ * its own, a submodule or a linked worktree. The hook opens the work tree
+ * its root is in and decides by that work tree's briefs. A file of the
+ * project is outside it, which the hook reads as a file outside the
+ * repository: it says nothing, exit 0, as it has in every release, and that
+ * stays. So no write to a file of the project is checked under the line,
+ * and `doctor` says it as a guard that is off. Only git can tell such a
+ * root, so the caller asks it.
+ */
+export declare function elsewhereHookLine(root: string, tree: OtherTree): GuardOff;
+/**
+ * A line that guards under a root in a work tree which holds the project
+ * and is not its own: a repository the project is nested in, or the main
+ * work tree around a linked one. `path` is the project's top as that work
+ * tree names it.
+ */
+export declare function holderHookLine(line: Guards, tree: OtherTree, path: string): Guards;
 /**
  * What Claude Code's hook does with the words it is handed, or `null` for
  * words that are not its line: read by the parser the command line reads

package/dist/usage.js

@@ -118,6 +118,10 @@ export function isClaudeHook(command, argument) {
 export function noDirectory(root) {
     return `--root is "${root}", which is not a directory`;
 }
+/** How such a work tree is named: by its top, and whose it is. */
+export function namedTree({ top, ours }) {
+    return `${top}, ${ours ? 'another work tree of this repository' : 'the work tree of another repository'}`;
+}
 /**
  * A line under which the round has no brief to be checked against, since
  * what names one names a brief spec-brief does not know, or one it has
@@ -151,6 +155,55 @@ export function readHookLine(root, cwd, isDirectory) {
     }
     return { state: 'guards', root: given };
 }
+/**
+ * A line whose root is a directory outside any git work tree. The hook
+ * reads that as a session outside one, where it has nothing to guard: it
+ * checks no write and says nothing, exit 0 (ADR-0005), and that stays. Only
+ * git can tell such a root, so the caller asks it. A line that carries one
+ * is a guard someone set up that checks nothing, and `doctor` says it as
+ * off.
+ */
+export function outsideHookLine(root) {
+    return {
+        state: 'off',
+        silent: true,
+        fault: {
+            wrong: `--root is "${root}", a directory outside any git work tree, which the hook reads as a session outside one, exit 0 and no word`,
+            mend: "give the hook's line a directory in the work tree, or leave --root out for the project Claude Code names",
+        },
+    };
+}
+/**
+ * A line whose root is in a git work tree that does not hold the project:
+ * another repository beside it, or a work tree inside it, a repository of
+ * its own, a submodule or a linked worktree. The hook opens the work tree
+ * its root is in and decides by that work tree's briefs. A file of the
+ * project is outside it, which the hook reads as a file outside the
+ * repository: it says nothing, exit 0, as it has in every release, and that
+ * stays. So no write to a file of the project is checked under the line,
+ * and `doctor` says it as a guard that is off. Only git can tell such a
+ * root, so the caller asks it.
+ */
+export function elsewhereHookLine(root, tree) {
+    return {
+        state: 'off',
+        silent: true,
+        unchecked: 'no write to a file of this project is checked',
+        fault: {
+            wrong: `--root is "${root}", a directory in ${namedTree(tree)}, which does not hold this project: the hook checks a write to a file of that work tree, by its briefs, and passes any other with no word, exit 0`,
+            mend: "give the hook's line a directory in this work tree, or leave --root out for the project Claude Code names",
+        },
+    };
+}
+/**
+ * A line that guards under a root in a work tree which holds the project
+ * and is not its own: a repository the project is nested in, or the main
+ * work tree around a linked one. `path` is the project's top as that work
+ * tree names it.
+ */
+export function holderHookLine(line, tree, path) {
+    return { ...line, holder: { ...tree, path } };
+}
 /**
  * What Claude Code's hook does with the words it is handed, or `null` for
  * words that are not its line: read by the parser the command line reads