@delta-infra/cli 1.1.18 → 1.1.19

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (50) hide show
  1. package/README.md +11 -4
  2. package/checksums.txt +5 -5
  3. package/package.json +3 -2
  4. package/scripts/install-wizard.js +18 -31
  5. package/skills/delta-protein/AGENTS.md +73 -0
  6. package/skills/delta-protein/SKILL.md +389 -0
  7. package/skills/delta-protein/agents/openai.yaml +4 -0
  8. package/skills/delta-protein/references/bfitter.md +64 -0
  9. package/skills/delta-protein/references/catapro_predict.md +63 -0
  10. package/skills/delta-protein/references/catpred_predict.md +65 -0
  11. package/skills/delta-protein/references/caver_tunnel_analyze.md +63 -0
  12. package/skills/delta-protein/references/consensus_mutation.md +61 -0
  13. package/skills/delta-protein/references/consurf_predict.md +67 -0
  14. package/skills/delta-protein/references/crop_sequence.md +69 -0
  15. package/skills/delta-protein/references/dock.md +82 -0
  16. package/skills/delta-protein/references/dock_score.md +70 -0
  17. package/skills/delta-protein/references/easifa_predict_active_site.md +70 -0
  18. package/skills/delta-protein/references/ephod_predict_mutation.md +66 -0
  19. package/skills/delta-protein/references/ephod_predict_protein.md +61 -0
  20. package/skills/delta-protein/references/esmfold2_predict.md +67 -0
  21. package/skills/delta-protein/references/evcouplings_mutation.md +64 -0
  22. package/skills/delta-protein/references/fasta_to_sequence.md +59 -0
  23. package/skills/delta-protein/references/foldseek.md +61 -0
  24. package/skills/delta-protein/references/generate_msa.md +61 -0
  25. package/skills/delta-protein/references/interpro_analyze.md +63 -0
  26. package/skills/delta-protein/references/mpnn_design_sequence.md +71 -0
  27. package/skills/delta-protein/references/multievolve.md +73 -0
  28. package/skills/delta-protein/references/pisa_query.md +70 -0
  29. package/skills/delta-protein/references/plip_analyze.md +65 -0
  30. package/skills/delta-protein/references/pocket_prediction.md +63 -0
  31. package/skills/delta-protein/references/protein_design.md +65 -0
  32. package/skills/delta-protein/references/protein_evolution.md +77 -0
  33. package/skills/delta-protein/references/protein_sol_predict_mutation.md +66 -0
  34. package/skills/delta-protein/references/protein_sol_predict_protein.md +61 -0
  35. package/skills/delta-protein/references/protenix.md +66 -0
  36. package/skills/delta-protein/references/protrek_search.md +90 -0
  37. package/skills/delta-protein/references/pubchem_search.md +68 -0
  38. package/skills/delta-protein/references/pubmed_search.md +79 -0
  39. package/skills/delta-protein/references/reap_design_primer.md +69 -0
  40. package/skills/delta-protein/references/rfd3_design.md +65 -0
  41. package/skills/delta-protein/references/structure_to_sequence.md +61 -0
  42. package/skills/delta-protein/references/summarize_result.md +68 -0
  43. package/skills/delta-protein/references/surface_charge.md +84 -0
  44. package/skills/delta-protein/references/uniprot_batch_query.md +63 -0
  45. package/skills/delta-protein/references/uniprot_query.md +64 -0
  46. package/skills/delta-protein/references/zero_shot_mutant_candidates.md +76 -0
  47. package/skills/delta-protein/scripts/gen_references.py +167 -0
  48. package/skills/delta-protein/scripts/output_metadata.json +275 -0
  49. package/skills/delta-science/references/xrd.md +704 -197
  50. package/skills/manifest.json +2 -1
package/skills/manifest.json CHANGED
@@ -2,7 +2,8 @@
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  "skills": [
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  "delta-sandbox",
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  "delta-shared",
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- "delta-science"
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+ "delta-science",
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+ "delta-protein"
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  ],
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  "retired_skills": [
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  "pubchem",