@delta-infra/cli 1.1.14 → 1.1.15

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Files changed (32) hide show
  1. package/README.md +493 -493
  2. package/checksums.txt +5 -5
  3. package/package.json +1 -1
  4. package/scripts/install-wizard.js +701 -701
  5. package/scripts/install.js +442 -442
  6. package/scripts/run.js +65 -65
  7. package/skills/delta-sandbox/SKILL.md +386 -386
  8. package/skills/delta-sandbox/agents/openai.yaml +4 -4
  9. package/skills/delta-sandbox/references/commands.md +58 -58
  10. package/skills/delta-sandbox/references/lifecycle.md +100 -100
  11. package/skills/delta-sandbox/references/recipes.md +138 -138
  12. package/skills/delta-science/AGENTS.md +47 -47
  13. package/skills/delta-science/SKILL.md +182 -174
  14. package/skills/delta-science/agents/openai.yaml +4 -4
  15. package/skills/delta-science/references/antbo.md +100 -100
  16. package/skills/delta-science/references/delta-bo.md +89 -89
  17. package/skills/delta-science/references/gsasii.md +116 -116
  18. package/skills/delta-science/references/lammps.md +66 -66
  19. package/skills/delta-science/references/ldm-bo.md +129 -129
  20. package/skills/delta-science/references/materials-design.md +118 -118
  21. package/skills/delta-science/references/pubchem.md +126 -126
  22. package/skills/delta-science/references/pymatgen.md +68 -68
  23. package/skills/delta-science/references/qe.md +125 -125
  24. package/skills/delta-science/references/rdkit.md +138 -138
  25. package/skills/delta-science/references/strbo.md +87 -87
  26. package/skills/delta-science/references/synbo.md +198 -198
  27. package/skills/delta-science/scripts/catalog.py +92 -92
  28. package/skills/delta-science/scripts/generated_catalog.py +69 -69
  29. package/skills/delta-science/scripts/invoke.py +346 -346
  30. package/skills/delta-shared/SKILL.md +111 -111
  31. package/skills/delta-shared/agents/openai.yaml +4 -4
  32. package/skills/manifest.json +19 -19
@@ -1,126 +1,126 @@
1
- # PubChem 详细规则
2
-
3
- 只能通过 `delta-cli science invoke` 调用。本文件中的业务响应位于 CLI 顶层 `data`;
4
- 只按本文件说明读取字段,不得递归搜索。本文件中的 URL 只用于说明 endpoint schema,
5
- 不授权直接 HTTP。普通名称基础查询只调用一次 `compound-summary`;多个名称
6
- 只调用一次 `compound-batch-summary`,默认 body 仅包含 `identifiers` 和
7
- `namespace:"name"`,不得先调用 health/schema。
8
-
9
- 结果直接从 `data` 投影。批量记录位于 `data.results[*]`,原始标签在 `input`,
10
- 属性在嵌套 `properties`。SMILES 回退顺序固定为
11
- `CanonicalSMILES -> ConnectivitySMILES -> SMILES -> IsomericSMILES`。
12
- PubChem `XLogP` 与 RDKit `MolLogP` 不得互换;not_found 不得用本地计算补值。
13
-
14
- Namespaces: `cid`, `name`, `smiles`, `inchi`, `inchikey`, `formula`.
15
-
16
- ## Health
17
-
18
- operation:`health`,无 body。
19
-
20
- ## Resolve CIDs
21
-
22
- operation:`compound-resolve-cids`。
23
-
24
- ```json
25
- {"identifier": "aspirin", "namespace": "name", "max_records": 20}
26
- ```
27
-
28
- `max_records`: 1-100.
29
-
30
- ## Properties
31
-
32
- operation:`compound-properties`。
33
-
34
- ```json
35
- {
36
- "identifier": "2244",
37
- "namespace": "cid",
38
- "properties": ["MolecularFormula", "MolecularWeight", "CanonicalSMILES", "IUPACName"]
39
- }
40
- ```
41
-
42
- Allowed properties include `MolecularFormula`, `MolecularWeight`,
43
- `CanonicalSMILES`, `IsomericSMILES`, `SMILES`, `ConnectivitySMILES`,
44
- `IUPACName`, `InChI`, `InChIKey`, `XLogP`, `TPSA`, `HBondDonorCount`,
45
- `HBondAcceptorCount`, `RotatableBondCount`, `ExactMass`, `MonoisotopicMass`,
46
- `Charge`, `HeavyAtomCount`, `Complexity`, `CovalentUnitCount`,
47
- `DefinedAtomStereoCount`, `UndefinedAtomStereoCount`, `DefinedBondStereoCount`,
48
- `UndefinedBondStereoCount`, and `IsotopeAtomCount`.
49
-
50
- ## Synonyms
51
-
52
- operation:`compound-synonyms`。
53
-
54
- ```json
55
- {"identifier": "2244", "namespace": "cid", "max_synonyms": 50}
56
- ```
57
-
58
- `max_synonyms`: 1-500.
59
-
60
- ## Summary
61
-
62
- operation:`compound-summary`。
63
-
64
- ```json
65
- {
66
- "identifier": "aspirin",
67
- "namespace": "name",
68
- "properties": ["MolecularFormula", "MolecularWeight", "CanonicalSMILES", "IUPACName"],
69
- "synonym_limit": 20
70
- }
71
- ```
72
-
73
- `synonym_limit`: 0-100. Use this endpoint for general compound lookup because
74
- it resolves CID, selected properties, and synonyms in one call.
75
-
76
- Response fields include `valid`, `cid`, `properties`, `properties_raw`,
77
- `aliases`, `synonyms`, and `metadata`. Numeric properties are coerced to JSON
78
- numbers when possible. Requested SMILES aliases are filled when PubChem returns
79
- an equivalent key such as `ConnectivitySMILES`.
80
-
81
- ## Batch Summary
82
-
83
- operation:`compound-batch-summary`。
84
-
85
- ```json
86
- {
87
- "identifiers": ["aspirin", "ibuprofen", "caffeine"],
88
- "namespace": "name",
89
- "properties": ["MolecularFormula", "MolecularWeight", "CanonicalSMILES", "XLogP", "TPSA"],
90
- "synonym_limit": 5
91
- }
92
- ```
93
-
94
- Limits: 1-100 identifiers. The response preserves input order and includes
95
- per-item errors:
96
-
97
- ```json
98
- {
99
- "valid": false,
100
- "namespace": "name",
101
- "properties_requested": ["CanonicalSMILES"],
102
- "results": [
103
- {
104
- "input": "aspirin",
105
- "valid": true,
106
- "cid": 2244,
107
- "properties": {
108
- "CanonicalSMILES": "CC(=O)Oc1ccccc1C(=O)O",
109
- "ConnectivitySMILES": "CC(=O)Oc1ccccc1C(=O)O",
110
- "_aliases": {"CanonicalSMILES": "ConnectivitySMILES"},
111
- "properties_raw": {}
112
- },
113
- "properties_raw": {},
114
- "aliases": {"CanonicalSMILES": "ConnectivitySMILES"},
115
- "synonyms": []
116
- },
117
- {
118
- "input": "bad-name",
119
- "valid": false,
120
- "error": "not found"
121
- }
122
- ],
123
- "count": 2,
124
- "failed_count": 1
125
- }
126
- ```
1
+ # PubChem 详细规则
2
+
3
+ 只能通过 `delta-cli science invoke` 调用。本文件中的业务响应位于 CLI 顶层 `data`;
4
+ 只按本文件说明读取字段,不得递归搜索。本文件中的 URL 只用于说明 endpoint schema,
5
+ 不授权直接 HTTP。普通名称基础查询只调用一次 `compound-summary`;多个名称
6
+ 只调用一次 `compound-batch-summary`,默认 body 仅包含 `identifiers` 和
7
+ `namespace:"name"`,不得先调用 health/schema。
8
+
9
+ 结果直接从 `data` 投影。批量记录位于 `data.results[*]`,原始标签在 `input`,
10
+ 属性在嵌套 `properties`。SMILES 回退顺序固定为
11
+ `CanonicalSMILES -> ConnectivitySMILES -> SMILES -> IsomericSMILES`。
12
+ PubChem `XLogP` 与 RDKit `MolLogP` 不得互换;not_found 不得用本地计算补值。
13
+
14
+ Namespaces: `cid`, `name`, `smiles`, `inchi`, `inchikey`, `formula`.
15
+
16
+ ## Health
17
+
18
+ operation:`health`,无 body。
19
+
20
+ ## Resolve CIDs
21
+
22
+ operation:`compound-resolve-cids`。
23
+
24
+ ```json
25
+ {"identifier": "aspirin", "namespace": "name", "max_records": 20}
26
+ ```
27
+
28
+ `max_records`: 1-100.
29
+
30
+ ## Properties
31
+
32
+ operation:`compound-properties`。
33
+
34
+ ```json
35
+ {
36
+ "identifier": "2244",
37
+ "namespace": "cid",
38
+ "properties": ["MolecularFormula", "MolecularWeight", "CanonicalSMILES", "IUPACName"]
39
+ }
40
+ ```
41
+
42
+ Allowed properties include `MolecularFormula`, `MolecularWeight`,
43
+ `CanonicalSMILES`, `IsomericSMILES`, `SMILES`, `ConnectivitySMILES`,
44
+ `IUPACName`, `InChI`, `InChIKey`, `XLogP`, `TPSA`, `HBondDonorCount`,
45
+ `HBondAcceptorCount`, `RotatableBondCount`, `ExactMass`, `MonoisotopicMass`,
46
+ `Charge`, `HeavyAtomCount`, `Complexity`, `CovalentUnitCount`,
47
+ `DefinedAtomStereoCount`, `UndefinedAtomStereoCount`, `DefinedBondStereoCount`,
48
+ `UndefinedBondStereoCount`, and `IsotopeAtomCount`.
49
+
50
+ ## Synonyms
51
+
52
+ operation:`compound-synonyms`。
53
+
54
+ ```json
55
+ {"identifier": "2244", "namespace": "cid", "max_synonyms": 50}
56
+ ```
57
+
58
+ `max_synonyms`: 1-500.
59
+
60
+ ## Summary
61
+
62
+ operation:`compound-summary`。
63
+
64
+ ```json
65
+ {
66
+ "identifier": "aspirin",
67
+ "namespace": "name",
68
+ "properties": ["MolecularFormula", "MolecularWeight", "CanonicalSMILES", "IUPACName"],
69
+ "synonym_limit": 20
70
+ }
71
+ ```
72
+
73
+ `synonym_limit`: 0-100. Use this endpoint for general compound lookup because
74
+ it resolves CID, selected properties, and synonyms in one call.
75
+
76
+ Response fields include `valid`, `cid`, `properties`, `properties_raw`,
77
+ `aliases`, `synonyms`, and `metadata`. Numeric properties are coerced to JSON
78
+ numbers when possible. Requested SMILES aliases are filled when PubChem returns
79
+ an equivalent key such as `ConnectivitySMILES`.
80
+
81
+ ## Batch Summary
82
+
83
+ operation:`compound-batch-summary`。
84
+
85
+ ```json
86
+ {
87
+ "identifiers": ["aspirin", "ibuprofen", "caffeine"],
88
+ "namespace": "name",
89
+ "properties": ["MolecularFormula", "MolecularWeight", "CanonicalSMILES", "XLogP", "TPSA"],
90
+ "synonym_limit": 5
91
+ }
92
+ ```
93
+
94
+ Limits: 1-100 identifiers. The response preserves input order and includes
95
+ per-item errors:
96
+
97
+ ```json
98
+ {
99
+ "valid": false,
100
+ "namespace": "name",
101
+ "properties_requested": ["CanonicalSMILES"],
102
+ "results": [
103
+ {
104
+ "input": "aspirin",
105
+ "valid": true,
106
+ "cid": 2244,
107
+ "properties": {
108
+ "CanonicalSMILES": "CC(=O)Oc1ccccc1C(=O)O",
109
+ "ConnectivitySMILES": "CC(=O)Oc1ccccc1C(=O)O",
110
+ "_aliases": {"CanonicalSMILES": "ConnectivitySMILES"},
111
+ "properties_raw": {}
112
+ },
113
+ "properties_raw": {},
114
+ "aliases": {"CanonicalSMILES": "ConnectivitySMILES"},
115
+ "synonyms": []
116
+ },
117
+ {
118
+ "input": "bad-name",
119
+ "valid": false,
120
+ "error": "not found"
121
+ }
122
+ ],
123
+ "count": 2,
124
+ "failed_count": 1
125
+ }
126
+ ```
@@ -1,68 +1,68 @@
1
- # pymatgen 详细规则
2
-
3
- 所有调用直接使用 `delta-cli science invoke`。无机化学式、组成和式量优先使用 pymatgen,不用 PubChem
4
- 或本地元素表替代。结构 operation 必须发送完整结构文本,不能发送本地文件路径;
5
- 支持 `cif`、`poscar`、`json`、`cssr`、`xsf`,不接收 LAMMPS data/dump。
6
-
7
- ## Health
8
-
9
- operation:`health`,无 body。
10
-
11
- ## Composition Parse
12
-
13
- operation:`composition-parse`。
14
-
15
- ```json
16
- {"formula": "LiFePO4", "format": "formula"}
17
- ```
18
-
19
- Key response fields in `data`: `valid`, `formula`, `reduced_formula`,
20
- `alphabetic_formula`, `anonymous_formula`, `chemical_system`,
21
- `number_of_atoms`, `weight`, `element_amounts`, `atomic_fractions`,
22
- `weight_fractions`, `error`.
23
-
24
- ## Structure Parse / Summary
25
-
26
- operation:`structure-parse` 或 `structure-summary`。
27
-
28
- ```json
29
- {"input": "<CIF text>", "format": "cif", "primitive": false}
30
- ```
31
-
32
- Input formats: `cif`, `poscar`, `json`, `cssr`, `xsf`.
33
-
34
- Summary fields include `formula`, `reduced_formula`, `chemical_system`,
35
- `nsites`, `nelements`, `density`, `volume`, `lattice`, `element_amounts`, and
36
- `species`.
37
-
38
- ## Structure Convert
39
-
40
- operation:`structure-convert`。
41
-
42
- ```json
43
- {
44
- "input": "<CIF text>",
45
- "input_format": "cif",
46
- "output_format": "poscar",
47
- "primitive": false
48
- }
49
- ```
50
-
51
- Output formats: `cif`, `poscar`, `json`, `cssr`, `xsf`.
52
-
53
- ## Symmetry
54
-
55
- operation:`structure-symmetry`。
56
-
57
- ```json
58
- {
59
- "input": "<CIF text>",
60
- "format": "cif",
61
- "primitive": false,
62
- "symprec": 0.01,
63
- "angle_tolerance": 5.0
64
- }
65
- ```
66
-
67
- Returns `space_group_symbol`, `space_group_number`, `crystal_system`,
68
- `point_group_symbol`, `hall`, and `nsites`.
1
+ # pymatgen 详细规则
2
+
3
+ 所有调用直接使用 `delta-cli science invoke`。无机化学式、组成和式量优先使用 pymatgen,不用 PubChem
4
+ 或本地元素表替代。结构 operation 必须发送完整结构文本,不能发送本地文件路径;
5
+ 支持 `cif`、`poscar`、`json`、`cssr`、`xsf`,不接收 LAMMPS data/dump。
6
+
7
+ ## Health
8
+
9
+ operation:`health`,无 body。
10
+
11
+ ## Composition Parse
12
+
13
+ operation:`composition-parse`。
14
+
15
+ ```json
16
+ {"formula": "LiFePO4", "format": "formula"}
17
+ ```
18
+
19
+ Key response fields in `data`: `valid`, `formula`, `reduced_formula`,
20
+ `alphabetic_formula`, `anonymous_formula`, `chemical_system`,
21
+ `number_of_atoms`, `weight`, `element_amounts`, `atomic_fractions`,
22
+ `weight_fractions`, `error`.
23
+
24
+ ## Structure Parse / Summary
25
+
26
+ operation:`structure-parse` 或 `structure-summary`。
27
+
28
+ ```json
29
+ {"input": "<CIF text>", "format": "cif", "primitive": false}
30
+ ```
31
+
32
+ Input formats: `cif`, `poscar`, `json`, `cssr`, `xsf`.
33
+
34
+ Summary fields include `formula`, `reduced_formula`, `chemical_system`,
35
+ `nsites`, `nelements`, `density`, `volume`, `lattice`, `element_amounts`, and
36
+ `species`.
37
+
38
+ ## Structure Convert
39
+
40
+ operation:`structure-convert`。
41
+
42
+ ```json
43
+ {
44
+ "input": "<CIF text>",
45
+ "input_format": "cif",
46
+ "output_format": "poscar",
47
+ "primitive": false
48
+ }
49
+ ```
50
+
51
+ Output formats: `cif`, `poscar`, `json`, `cssr`, `xsf`.
52
+
53
+ ## Symmetry
54
+
55
+ operation:`structure-symmetry`。
56
+
57
+ ```json
58
+ {
59
+ "input": "<CIF text>",
60
+ "format": "cif",
61
+ "primitive": false,
62
+ "symprec": 0.01,
63
+ "angle_tolerance": 5.0
64
+ }
65
+ ```
66
+
67
+ Returns `space_group_symbol`, `space_group_number`, `crystal_system`,
68
+ `point_group_symbol`, `hall`, and `nsites`.
@@ -1,125 +1,125 @@
1
- # Quantum ESPRESSO DFT 详细规则
2
-
3
- QE 用于通过 Chemistry Gateway 执行可追踪的异步 Quantum ESPRESSO 工作流。agent 只接触
4
- Gateway/Science Server contract,不运行本地 `pw.x`,不调用内部 QE 容器,也不提交 shell
5
- 命令、scheduler 脚本、`pseudo_dir`、`outdir` 或主机路径。
6
-
7
- 本 reference 对应 CLI 的真实工具为 `qe`。实际 `tools.name` 与 `tool_endpoints.name`
8
- 必须逐字取自当前 CLI catalog。下列路径是 QE 服务契约,不是可直接访问的 URL,也不是
9
- 可以自动改写的 endpoint 别名。
10
-
11
- ## 能力分组
12
-
13
- | 服务路径 | 作用 | 类型 |
14
- | --- | --- | --- |
15
- | `/chem/qe/health`、`/healthz`、`/readyz` | 运行时、scheduler、存储和 PP 就绪 | 只读 |
16
- | `/chem/qe/v1/qe/workflow-types` | workflow catalog 和支持状态 | 只读 |
17
- | `/chem/qe/v1/pp-sets`、`/pp-locks/{digest}` | 已发布 PP profile/lock | 只读 |
18
- | `/chem/qe/v1/pp-sets:resolve` | 按 campaign 元素全集解析 PP 候选 | 只读/校验 |
19
- | `/chem/qe/v1/artifacts` | 上传、查询和下载结构/fixed-coordinate artifact | 文件/二进制 |
20
- | `/chem/qe/v1/qe/jobs` | 提交异步计算并查询 job | 远端变更 |
21
- | `/chem/qe/v1/qe/jobs/{job_id}/events`、`steps`、`logs`、`artifacts` | 读取作业过程和结果 | 只读 |
22
- | `/chem/qe/v1/qe/jobs/{job_id}:cancel`、`:retry`、`:review` | 取消、重试和科学审核 | 远端变更 |
23
-
24
- 选择新 operation 时,先使用:
25
-
26
- ```text
27
- delta-cli science list
28
- delta-cli science endpoints list <exact tool name>
29
- ```
30
-
31
- 再用目录返回的精确名称调用;如果 catalog 没有 schema,不猜测 operation、路径参数、
32
- 请求头或 body。
33
-
34
- ## CLI 的文件和幂等边界
35
-
36
- 结构 artifact 上传需要 `application/octet-stream` 和 query metadata,QE job 提交要求
37
- 稳定的 `Idempotency-Key`。`science invoke` 仍只用于 JSON/query;文件通过
38
- `science file`,持久化 job 通过 `science task`:
39
-
40
- - `delta-cli science file invoke --tool qe --endpoint artifact-upload --file <path>` 上传
41
- 结构 artifact;`custom-pp-upload` 同理并在 `--data` 中提供 `custom_pp_id`;
42
- - `delta-cli science task submit --tool qe --operation job-submit --input JSON
43
- --idempotency-key KEY` 提交 durable QE job,worker 将幂等键传给 Gateway;
44
- - `delta-cli science file download --tool qe --endpoint artifact-content --params JSON
45
- --output <path>` 下载原始 artifact;
46
- - 不要把结构文本、文件路径、base64、`Idempotency-Key` 或 QE service credential 当成
47
- 普通业务字段发送,也不要调用公开/私有 Gateway URL 或 `qe-cloud-compute:18020`。
48
-
49
- ## 新作业的正确顺序
50
-
51
- 1. 读取 health;需要部署诊断时再读取 readiness,并从 workflow catalog 选择当前
52
- `supported` 的 task。
53
- 2. 计算完整 `campaign_elements` 集合,使用 `pp-sets:resolve` 得到 profile;生产作业
54
- 必须使用服务返回的 `pp_set_id` 与不可变 `lock_id`,不能只凭 profile 名称推断 lock。
55
- 3. 让服务校验结构 artifact,job 只引用返回的 `sha256:<digest>` artifact ID。
56
- 4. 用稳定幂等语义提交 `qe/jobs`;接收 `202` 只代表 accepted/queued,不代表 QE 已收敛。
57
- 5. 轮询 job、events、steps、logs 和 artifacts;独立读取 `execution`、`solver`、
58
- `scientific` 三个状态。
59
- 6. 下载结果时校验每个 artifact 的 SHA-256,并分别报告 selected backend、资源 telemetry、
60
- solver 状态、scientific review 状态和 warnings。
61
-
62
- PP 解析的最小业务数据形状如下;其中值必须来自当前服务/目录,不能填入虚构的生产 lock:
63
-
64
- ```json
65
- {
66
- "campaign_id": "si-bulk-scf-v1",
67
- "campaign_elements": ["Si", "O"],
68
- "workflows": ["qe.pw.scf"],
69
- "explicit_mode": null
70
- }
71
- ```
72
-
73
- 作业的核心结构如下,`workflow_inputs` 必须遵循当前 task schema:
74
-
75
- ```json
76
- {
77
- "task": "qe.pw.scf",
78
- "schema_version": "1.1",
79
- "campaign_id": "si-bulk-scf-v1",
80
- "campaign_elements": ["Si"],
81
- "structure": {"format": "artifact", "artifact_id": "sha256:<64-hex>"},
82
- "physics": {
83
- "parameter_set": "<approved-parameter-set>",
84
- "pp_policy": {
85
- "mode": "sssp_single",
86
- "pp_set_id": "<approved-pp-set>",
87
- "lock_id": "sha256:<64-hex>"
88
- },
89
- "kpoints": [4, 4, 4]
90
- },
91
- "resources": {
92
- "profile": "standard",
93
- "nodes": 1,
94
- "mpi_ranks_per_node": 1,
95
- "omp_threads_per_rank": 1,
96
- "walltime_seconds": 3600,
97
- "gpu_policy": "cpu"
98
- },
99
- "client_request_id": "si-scf-v1",
100
- "workflow_inputs": {}
101
- }
102
- ```
103
-
104
- ## CPU/GPU 与状态解释
105
-
106
- CPU 是默认策略,尤其适用于小/中型交互任务、PP/结构/审计/归档任务和成本敏感场景。
107
- 只有用户明确要求或项目已有 GPU 预算,并且 live catalog 返回
108
- `gpu_support_status: "verified"` 时,才使用 `gpu`;强制 GPU 不得静默回退 CPU。只有
109
- 结果明确返回 `selected_backend: "gpu"` 才能声称实际使用 GPU;`auto` 不是 GPU 使用证明。
110
-
111
- 三个状态通道不可合并:
112
-
113
- - `execution`:prepared/submitted/queued/running/scheduler completion/cancelled/failed;
114
- - `solver`:not started/running/converged/not converged/failed/unknown;
115
- - `scientific`:unreviewed、scientifically accepted、accepted with limitations、needs
116
- recalculation、not assessable、failed 或 archived。
117
-
118
- scheduler 完成不等于 solver 收敛,solver 收敛也不等于 scientific acceptance。按稳定
119
- 错误码而不是 message 分支,重点包括 `PP_SET_INCOMPLETE`、`PP_POLICY_INCOMPATIBLE`、
120
- `PP_CAPABILITY_UNKNOWN`、`ARTIFACT_MISSING`、`SOLVER_NOT_CONVERGED`、
121
- `SCIENTIFIC_GATE_FAILED`、`RESTART_INCOMPATIBLE`、`IDEMPOTENCY_CONFLICT`、
122
- `EXECUTION_BACKEND_NOT_READY`、`GPU_UNSUPPORTED` 和 `GPU_UNAVAILABLE`。
123
-
124
- 提交、取消、重试或审核属于远端变更,必须有用户明确授权;结果未知时禁止重试。不要把
125
- GPU smoke test、scheduler 日志或可解析的 QE 输出描述成科学结论或客户级性能保证。
1
+ # Quantum ESPRESSO DFT 详细规则
2
+
3
+ QE 用于通过 Chemistry Gateway 执行可追踪的异步 Quantum ESPRESSO 工作流。agent 只接触
4
+ Gateway/Science Server contract,不运行本地 `pw.x`,不调用内部 QE 容器,也不提交 shell
5
+ 命令、scheduler 脚本、`pseudo_dir`、`outdir` 或主机路径。
6
+
7
+ 本 reference 对应 CLI 的真实工具为 `qe`。实际 `tools.name` 与 `tool_endpoints.name`
8
+ 必须逐字取自当前 CLI catalog。下列路径是 QE 服务契约,不是可直接访问的 URL,也不是
9
+ 可以自动改写的 endpoint 别名。
10
+
11
+ ## 能力分组
12
+
13
+ | 服务路径 | 作用 | 类型 |
14
+ | --- | --- | --- |
15
+ | `/chem/qe/health`、`/healthz`、`/readyz` | 运行时、scheduler、存储和 PP 就绪 | 只读 |
16
+ | `/chem/qe/v1/qe/workflow-types` | workflow catalog 和支持状态 | 只读 |
17
+ | `/chem/qe/v1/pp-sets`、`/pp-locks/{digest}` | 已发布 PP profile/lock | 只读 |
18
+ | `/chem/qe/v1/pp-sets:resolve` | 按 campaign 元素全集解析 PP 候选 | 只读/校验 |
19
+ | `/chem/qe/v1/artifacts` | 上传、查询和下载结构/fixed-coordinate artifact | 文件/二进制 |
20
+ | `/chem/qe/v1/qe/jobs` | 提交异步计算并查询 job | 远端变更 |
21
+ | `/chem/qe/v1/qe/jobs/{job_id}/events`、`steps`、`logs`、`artifacts` | 读取作业过程和结果 | 只读 |
22
+ | `/chem/qe/v1/qe/jobs/{job_id}:cancel`、`:retry`、`:review` | 取消、重试和科学审核 | 远端变更 |
23
+
24
+ 选择新 operation 时,先使用:
25
+
26
+ ```text
27
+ delta-cli science list
28
+ delta-cli science endpoints list <exact tool name>
29
+ ```
30
+
31
+ 再用目录返回的精确名称调用;如果 catalog 没有 schema,不猜测 operation、路径参数、
32
+ 请求头或 body。
33
+
34
+ ## CLI 的文件和幂等边界
35
+
36
+ 结构 artifact 上传需要 `application/octet-stream` 和 query metadata,QE job 提交要求
37
+ 稳定的 `Idempotency-Key`。`science invoke` 仍只用于 JSON/query;文件通过
38
+ `science file`,持久化 job 通过 `science task`:
39
+
40
+ - `delta-cli science file invoke --tool qe --endpoint artifact-upload --file <path>` 上传
41
+ 结构 artifact;`custom-pp-upload` 同理并在 `--data` 中提供 `custom_pp_id`;
42
+ - `delta-cli science task submit --tool qe --operation job-submit --input JSON
43
+ --idempotency-key KEY` 提交 durable QE job,worker 将幂等键传给 Gateway;
44
+ - `delta-cli science file download --tool qe --endpoint artifact-content --params JSON
45
+ --output <path>` 下载原始 artifact;
46
+ - 不要把结构文本、文件路径、base64、`Idempotency-Key` 或 QE service credential 当成
47
+ 普通业务字段发送,也不要调用公开/私有 Gateway URL 或 `qe-cloud-compute:18020`。
48
+
49
+ ## 新作业的正确顺序
50
+
51
+ 1. 读取 health;需要部署诊断时再读取 readiness,并从 workflow catalog 选择当前
52
+ `supported` 的 task。
53
+ 2. 计算完整 `campaign_elements` 集合,使用 `pp-sets:resolve` 得到 profile;生产作业
54
+ 必须使用服务返回的 `pp_set_id` 与不可变 `lock_id`,不能只凭 profile 名称推断 lock。
55
+ 3. 让服务校验结构 artifact,job 只引用返回的 `sha256:<digest>` artifact ID。
56
+ 4. 用稳定幂等语义提交 `qe/jobs`;接收 `202` 只代表 accepted/queued,不代表 QE 已收敛。
57
+ 5. 轮询 job、events、steps、logs 和 artifacts;独立读取 `execution`、`solver`、
58
+ `scientific` 三个状态。
59
+ 6. 下载结果时校验每个 artifact 的 SHA-256,并分别报告 selected backend、资源 telemetry、
60
+ solver 状态、scientific review 状态和 warnings。
61
+
62
+ PP 解析的最小业务数据形状如下;其中值必须来自当前服务/目录,不能填入虚构的生产 lock:
63
+
64
+ ```json
65
+ {
66
+ "campaign_id": "si-bulk-scf-v1",
67
+ "campaign_elements": ["Si", "O"],
68
+ "workflows": ["qe.pw.scf"],
69
+ "explicit_mode": null
70
+ }
71
+ ```
72
+
73
+ 作业的核心结构如下,`workflow_inputs` 必须遵循当前 task schema:
74
+
75
+ ```json
76
+ {
77
+ "task": "qe.pw.scf",
78
+ "schema_version": "1.1",
79
+ "campaign_id": "si-bulk-scf-v1",
80
+ "campaign_elements": ["Si"],
81
+ "structure": {"format": "artifact", "artifact_id": "sha256:<64-hex>"},
82
+ "physics": {
83
+ "parameter_set": "<approved-parameter-set>",
84
+ "pp_policy": {
85
+ "mode": "sssp_single",
86
+ "pp_set_id": "<approved-pp-set>",
87
+ "lock_id": "sha256:<64-hex>"
88
+ },
89
+ "kpoints": [4, 4, 4]
90
+ },
91
+ "resources": {
92
+ "profile": "standard",
93
+ "nodes": 1,
94
+ "mpi_ranks_per_node": 1,
95
+ "omp_threads_per_rank": 1,
96
+ "walltime_seconds": 3600,
97
+ "gpu_policy": "cpu"
98
+ },
99
+ "client_request_id": "si-scf-v1",
100
+ "workflow_inputs": {}
101
+ }
102
+ ```
103
+
104
+ ## CPU/GPU 与状态解释
105
+
106
+ CPU 是默认策略,尤其适用于小/中型交互任务、PP/结构/审计/归档任务和成本敏感场景。
107
+ 只有用户明确要求或项目已有 GPU 预算,并且 live catalog 返回
108
+ `gpu_support_status: "verified"` 时,才使用 `gpu`;强制 GPU 不得静默回退 CPU。只有
109
+ 结果明确返回 `selected_backend: "gpu"` 才能声称实际使用 GPU;`auto` 不是 GPU 使用证明。
110
+
111
+ 三个状态通道不可合并:
112
+
113
+ - `execution`:prepared/submitted/queued/running/scheduler completion/cancelled/failed;
114
+ - `solver`:not started/running/converged/not converged/failed/unknown;
115
+ - `scientific`:unreviewed、scientifically accepted、accepted with limitations、needs
116
+ recalculation、not assessable、failed 或 archived。
117
+
118
+ scheduler 完成不等于 solver 收敛,solver 收敛也不等于 scientific acceptance。按稳定
119
+ 错误码而不是 message 分支,重点包括 `PP_SET_INCOMPLETE`、`PP_POLICY_INCOMPATIBLE`、
120
+ `PP_CAPABILITY_UNKNOWN`、`ARTIFACT_MISSING`、`SOLVER_NOT_CONVERGED`、
121
+ `SCIENTIFIC_GATE_FAILED`、`RESTART_INCOMPATIBLE`、`IDEMPOTENCY_CONFLICT`、
122
+ `EXECUTION_BACKEND_NOT_READY`、`GPU_UNSUPPORTED` 和 `GPU_UNAVAILABLE`。
123
+
124
+ 提交、取消、重试或审核属于远端变更,必须有用户明确授权;结果未知时禁止重试。不要把
125
+ GPU smoke test、scheduler 日志或可解析的 QE 输出描述成科学结论或客户级性能保证。