@delorenj/pjangler 1.2.1 → 1.2.3

package/dist/index.js

@@ -1,6 +1,9 @@
 #!/usr/bin/env node
 
 // src/index.ts
+import { spawnSync as spawnSync6 } from "node:child_process";
+import { existsSync as existsSync9, readFileSync as readFileSync6, statSync as statSync2 } from "node:fs";
+import { basename as basename4, join as join12, resolve as resolve3 } from "node:path";
 import { Command as Command3 } from "commander";
 
 // src/commands/hermes/types.ts
@@ -156,6 +159,78 @@ var EnsureTemplateConfig = class extends Command {
   }
 };
 
+// src/utils/style.ts
+var env = process.env;
+function detectColor() {
+  if ("NO_COLOR" in env && env.NO_COLOR !== "") return false;
+  const force = env.FORCE_COLOR;
+  if (force === "0" || force === "false") return false;
+  if (force !== void 0 && force !== "") return true;
+  if (env.TERM === "dumb") return false;
+  return Boolean(process.stdout.isTTY);
+}
+var colorEnabled = detectColor();
+function sgr(open, close) {
+  const prefix = `\x1B[${open}m`;
+  const suffix = `\x1B[${close}m`;
+  return (value) => colorEnabled ? `${prefix}${value}${suffix}` : String(value);
+}
+var bold = sgr(1, 22);
+var dim = sgr(2, 22);
+var italic = sgr(3, 23);
+var underline = sgr(4, 24);
+var red = sgr(31, 39);
+var green = sgr(32, 39);
+var yellow = sgr(33, 39);
+var blue = sgr(34, 39);
+var magenta = sgr(35, 39);
+var cyan = sgr(36, 39);
+var gray = sgr(90, 39);
+var glyph = {
+  pass: "\u2714",
+  fail: "\u2716",
+  warn: "\u26A0",
+  skip: "\u25CB",
+  info: "\u2139",
+  arrow: "\u21B3",
+  bullet: "\u2022",
+  dot: "\xB7",
+  add: "+",
+  chevron: "\u25B8",
+  pointer: "\u276F"
+};
+var STATUS_STYLES = {
+  pass: { glyph: glyph.pass, color: green, label: "pass" },
+  fail: { glyph: glyph.fail, color: red, label: "fail" },
+  warn: { glyph: glyph.warn, color: yellow, label: "warn" },
+  skip: { glyph: glyph.skip, color: gray, label: "skip" },
+  applied: { glyph: glyph.pass, color: green, label: "applied" },
+  noop: { glyph: glyph.skip, color: gray, label: "noop" },
+  blocked: { glyph: glyph.fail, color: red, label: "blocked" },
+  skipped: { glyph: glyph.skip, color: gray, label: "skipped" }
+};
+function statusStyle(status) {
+  return STATUS_STYLES[status] ?? { glyph: glyph.dot, color: dim, label: status };
+}
+function projectStatusColor(status) {
+  switch (status) {
+    case "active":
+      return green;
+    case "planned":
+      return yellow;
+    case "archived":
+      return gray;
+    default:
+      return cyan;
+  }
+}
+function heading(title, marker = glyph.chevron) {
+  return `${cyan(bold(marker))} ${bold(title)}`;
+}
+function joinDot(fragments) {
+  return fragments.join(dim(` ${glyph.dot} `));
+}
+
 // src/recipes/Recipe.ts
 var Recipe = class {
   context;
@@ -168,26 +243,22 @@ var Recipe = class {
     return this;
   }
   async execute() {
-    const dryRunPrefix = this.context.dryRun ? "[DRY RUN] " : "";
-    console.log(`${dryRunPrefix}\u{1F680} Initializing ${this.constructor.name.replace("Recipe", "").toLowerCase()} subsystem...`);
-    if (this.context.dryRun) {
-      console.log("\u26A0\uFE0F  Dry-run mode: No files will be modified");
-      console.log("");
-    }
+    const subsystem = this.constructor.name.replace("Recipe", "").toLowerCase();
+    const dryRun = this.context.dryRun;
+    console.log("");
+    console.log(`  ${cyan(bold(glyph.chevron))} ${bold(`Initializing ${subsystem} subsystem`)}${dryRun ? `  ${dim(glyph.dot)}  ${yellow("dry run")}` : ""}`);
+    console.log("");
     for (const command of this.ingredients) {
       const result = await command.invoke();
-      if (result.success) {
-        console.log(result.message);
-      } else {
-        console.log(result.message);
-      }
+      console.log(result.message.split("\n").map((line) => line ? `  ${line}` : line).join("\n"));
     }
-    if (!this.context.dryRun) {
+    if (!dryRun) {
       this.printNextSteps();
     } else {
       console.log("");
-      console.log("\u2713 Dry-run complete - no files were modified");
-      console.log("  Remove --dry-run flag to apply changes");
+      console.log(`  ${green(glyph.pass)} ${dim("Dry-run complete \u2014 no files were modified.")}`);
+      console.log(`  ${dim("Remove --dry-run to apply changes.")}`);
+      console.log("");
     }
   }
 };
@@ -330,11 +401,111 @@ if __name__ == "__main__":
   }
 };
 
+// src/commands/AddMiseCodegraphScript.ts
+import { chmodSync } from "fs";
+import { join as join3 } from "path";
+var AddMiseCodegraphScript = class extends Command {
+  async invoke() {
+    const filePath = ".mise/scripts/codegraph.sh";
+    if (this.fileExists(filePath) && !this.context.force) {
+      return {
+        success: false,
+        message: this.formatMessage("\u26A0\uFE0F  .mise/scripts/codegraph.sh already exists"),
+        filePath
+      };
+    }
+    const content = `#!/usr/bin/env bash
+# Mise enter hook: ensure the CodeGraph CLI is available and initialize the
+# project index. If \`codegraph\` is not installed, this script installs it
+# non-interactively into the project-local .mise/bin directory and retries.
+#
+# This is intended to run from a mise enter hook so onboarding a new host is
+# fully automatic.
+
+set -euo pipefail
+
+REPO_ROOT="\${MISE_PROJECT_ROOT:-$(cd "$(dirname "$0")/../.." && pwd)}"
+PROJECT_BIN_DIR="$REPO_ROOT/.mise/bin"
+mkdir -p "$PROJECT_BIN_DIR"
+
+# Install the CodeGraph CLI into the project-local bin directory.
+install_codegraph() {
+  echo "[mise] codegraph not found. Installing non-interactively..."
+  export CODEGRAPH_BIN_DIR="$PROJECT_BIN_DIR"
+  curl -fsSL https://raw.githubusercontent.com/colbymchenry/codegraph/main/install.sh | sh
+
+  if [ -x "$PROJECT_BIN_DIR/codegraph" ]; then
+    export PATH="$PROJECT_BIN_DIR:$PATH"
+  else
+    echo "[mise] codegraph install did not place a binary at $PROJECT_BIN_DIR/codegraph" >&2
+    return 1
+  fi
+}
+
+# Ensure a codegraph binary is available on PATH.
+ensure_codegraph() {
+  if command -v codegraph >/dev/null 2>&1; then
+    return 0
+  fi
+
+  # Check the project-local bin dir first (previous install from this hook).
+  if [ -x "$PROJECT_BIN_DIR/codegraph" ]; then
+    export PATH="$PROJECT_BIN_DIR:$PATH"
+    return 0
+  fi
+
+  # Check typical user-level install locations before fetching anything.
+  for d in "$HOME/.local/bin" "$HOME/.codegraph/current/bin"; do
+    if [ -x "$d/codegraph" ]; then
+      export PATH="$d:$PATH"
+      return 0
+    fi
+  done
+
+  install_codegraph
+}
+
+# Attempt to initialize the project graph. If the command is missing, install
+# it and retry once.
+init_project() {
+  local err_file
+  err_file="$(mktemp)"
+  trap 'rm -f "$err_file"' RETURN
+
+  if codegraph init -i "$REPO_ROOT" 2>"$err_file"; then
+    return 0
+  fi
+
+  # If the failure looks like a missing binary, install and retry.
+  if grep -qiE 'command not found|not installed|No such file|executable file not found' "$err_file" 2>/dev/null; then
+    ensure_codegraph
+    codegraph init -i "$REPO_ROOT"
+    return 0
+  fi
+
+  cat "$err_file" >&2
+  return 1
+}
+
+init_project
+`;
+    this.writeFile(filePath, content);
+    if (!this.context.dryRun) {
+      chmodSync(join3(this.context.targetDir, filePath), 493);
+    }
+    return {
+      success: true,
+      message: this.formatMessage(this.context.dryRun ? "Would create .mise/scripts/codegraph.sh" : "\u2705 Created .mise/scripts/codegraph.sh"),
+      filePath
+    };
+  }
+};
+
 // src/recipes/MiseRecipe.ts
 var MiseRecipe = class extends Recipe {
   constructor(context) {
     super(context);
-    this.addIngredient(AddMiseToml).addIngredient(AddDotenv).addIngredient(AddMiseTasksStructure).addIngredient(AddMiseBaseToml).addIngredient(AddMiseBaseScript);
+    this.addIngredient(AddMiseToml).addIngredient(AddDotenv).addIngredient(AddMiseTasksStructure).addIngredient(AddMiseBaseToml).addIngredient(AddMiseBaseScript).addIngredient(AddMiseCodegraphScript);
   }
   printNextSteps() {
     console.log("\u{1F389} Mise subsystem initialized successfully!");
@@ -562,12 +733,12 @@ var NodeRecipe = class extends Recipe {
 };
 
 // src/commands/hermes/PromptForAgentConfig.ts
-import { basename, join as join3 } from "node:path";
+import { basename, join as join4 } from "node:path";
 import { readFileSync } from "node:fs";
 import * as p from "@clack/prompts";
 function detectTicketProvider(targetDir) {
   try {
-    const t = JSON.parse(readFileSync(join3(targetDir, ".project.json"), "utf8"))?.ticket_provider?.type;
+    const t = JSON.parse(readFileSync(join4(targetDir, ".project.json"), "utf8"))?.ticket_provider?.type;
     return t === "plane" || t === "linear" || t === "trello" ? t : void 0;
   } catch {
     return void 0;
@@ -703,7 +874,7 @@ var PromptForAgentConfig = class extends Command {
 // src/commands/hermes/RunCopierTemplate.ts
 import { spawnSync } from "node:child_process";
 import { homedir as homedir2 } from "node:os";
-import { join as join4, dirname as dirname3 } from "node:path";
+import { join as join5, dirname as dirname3 } from "node:path";
 import { existsSync as existsSync3, mkdirSync as mkdirSync3 } from "node:fs";
 import { fileURLToPath } from "node:url";
 import * as p2 from "@clack/prompts";
@@ -715,8 +886,8 @@ function resolveVendoredTemplate(name) {
     return void 0;
   }
   for (let i = 0; i < 8; i++) {
-    const candidate = join4(dir, "templates", name);
-    if (existsSync3(join4(candidate, "copier.yml"))) return candidate;
+    const candidate = join5(dir, "templates", name);
+    if (existsSync3(join5(candidate, "copier.yml"))) return candidate;
     const parent = dirname3(dir);
     if (parent === dir) break;
     dir = parent;
@@ -735,7 +906,7 @@ var RunCopierTemplate = class extends Command {
         message: "PromptForAgentConfig must run before RunCopierTemplate (targetRepo/role unset)"
       };
     }
-    const roleDir = join4(ctx.targetDir, "agents", "hermes", role);
+    const roleDir = join5(ctx.targetDir, "agents", "hermes", role);
     ctx.roleDir = roleDir;
     ctx.runtimeRepo = `delorenj/agent-hm-${targetRepo}-${role}`;
     const which = spawnSync("which", ["copier"], { encoding: "utf8" });
@@ -745,7 +916,7 @@ var RunCopierTemplate = class extends Command {
         message: "\u2717 copier not found on PATH.  Install with: `uv tool install copier` or `pip install copier`"
       };
     }
-    if (existsSync3(join4(roleDir, "role.yaml")) && !ctx.force) {
+    if (existsSync3(join5(roleDir, "role.yaml")) && !ctx.force) {
       if (ctx.yes) {
         ctx.force = true;
       } else {
@@ -762,7 +933,7 @@ var RunCopierTemplate = class extends Command {
         ctx.force = true;
       }
     }
-    const env = {
+    const env2 = {
       ...process.env,
       SKIP_TELEGRAM: "1",
       SKIP_EMAIL: "1",
@@ -772,9 +943,9 @@ var RunCopierTemplate = class extends Command {
       SKIP_BLOODBANK: ctx.skipBloodbank ? "1" : "0",
       SKIP_SYSTEMD: ctx.skipSystemd ? "1" : "0"
     };
-    const LOCAL_TEMPLATE = join4(homedir2(), "code", "hermes-agent-template");
+    const LOCAL_TEMPLATE = join5(homedir2(), "code", "hermes-agent-template");
     const vendored = resolveVendoredTemplate("hermes-agent");
-    const templateSrc = process.env.PJANGLER_HERMES_TEMPLATE || vendored || (existsSync3(join4(LOCAL_TEMPLATE, "copier.yml")) ? LOCAL_TEMPLATE : HERMES_AGENT_TEMPLATE);
+    const templateSrc = process.env.PJANGLER_HERMES_TEMPLATE || vendored || (existsSync3(join5(LOCAL_TEMPLATE, "copier.yml")) ? LOCAL_TEMPLATE : HERMES_AGENT_TEMPLATE);
     const args = [
       "copy",
       templateSrc,
@@ -805,13 +976,13 @@ var RunCopierTemplate = class extends Command {
         message: this.formatMessage(`Would run: copier ${args.join(" ")}`)
       };
     }
-    mkdirSync3(join4(ctx.targetDir, "agents", "hermes"), { recursive: true });
+    mkdirSync3(join5(ctx.targetDir, "agents", "hermes"), { recursive: true });
     const spinner4 = p2.spinner();
     spinner4.start(`Running copier copy  (target: agents/hermes/${role})`);
     const result = spawnSync("copier", args, {
       stdio: "inherit",
       // pass the interactive output through; copier prints its own progress
-      env,
+      env: env2,
       cwd: ctx.targetDir
     });
     spinner4.stop(result.status === 0 ? "\u2713 copier run complete" : "\u2717 copier failed");
@@ -830,7 +1001,7 @@ var RunCopierTemplate = class extends Command {
 
 // src/commands/hermes/WireTelegram.ts
 import { spawnSync as spawnSync2 } from "node:child_process";
-import { join as join5 } from "node:path";
+import { join as join6 } from "node:path";
 import { existsSync as existsSync4, unlinkSync } from "node:fs";
 import * as p3 from "@clack/prompts";
 var WireTelegram = class extends Command {
@@ -919,14 +1090,14 @@ var WireTelegram = class extends Command {
     if (p3.isCancel(allowedAnswer)) {
       return { success: false, message: "\u2717 Aborted; Telegram step deferred." };
     }
-    const script = join5(roleDir, ".scripts", "30-telegram.sh");
+    const script = join6(roleDir, ".scripts", "30-telegram.sh");
     if (!existsSync4(script)) {
       return {
         success: false,
         message: `\u2717 ${script} not found.  Did copier finish?  Re-run with --skip-runtime-repo=0 if you skipped it.`
       };
     }
-    const marker = join5(roleDir, ".scripts", ".done-30-telegram");
+    const marker = join6(roleDir, ".scripts", ".done-30-telegram");
     if (existsSync4(marker)) unlinkSync(marker);
     const spinner4 = p3.spinner();
     spinner4.start("Verifying token + wiring profile");
@@ -954,7 +1125,7 @@ function cap(s) {
 
 // src/commands/hermes/WireEmail.ts
 import { spawnSync as spawnSync3 } from "node:child_process";
-import { join as join6 } from "node:path";
+import { join as join7 } from "node:path";
 import { existsSync as existsSync5, unlinkSync as unlinkSync2 } from "node:fs";
 import * as p4 from "@clack/prompts";
 var WireEmail = class extends Command {
@@ -970,7 +1141,7 @@ var WireEmail = class extends Command {
     if (!targetRepo || !role || !roleDir) {
       return { success: false, message: "Cannot wire email: missing target_repo/role/roleDir" };
     }
-    const script = join6(roleDir, ".scripts", "50-email.sh");
+    const script = join7(roleDir, ".scripts", "50-email.sh");
     if (!existsSync5(script)) {
       return { success: false, message: `\u2717 ${script} not found` };
     }
@@ -1033,7 +1204,7 @@ var WireEmail = class extends Command {
         }
       }
     }
-    const marker = join6(roleDir, ".scripts", ".done-50-email");
+    const marker = join7(roleDir, ".scripts", ".done-50-email");
     if (existsSync5(marker)) unlinkSync2(marker);
     const spinner4 = p4.spinner();
     spinner4.start("Creating Cloudflare Email Routing rule");
@@ -1122,7 +1293,7 @@ var HermesAgentRecipe = class extends Recipe {
 
 // src/commands/AgentHooksCommands.ts
 import { homedir as homedir3 } from "node:os";
-import { join as join7, dirname as dirname4 } from "node:path";
+import { join as join8, dirname as dirname4 } from "node:path";
 import { existsSync as existsSync6, cpSync, mkdirSync as mkdirSync4, readFileSync as readFileSync2, writeFileSync as writeFileSync3 } from "node:fs";
 import { fileURLToPath as fileURLToPath2 } from "node:url";
 function resolveTemplateRoot() {
@@ -1133,16 +1304,16 @@ function resolveTemplateRoot() {
   try {
     let dir = dirname4(fileURLToPath2(import.meta.url));
     for (let i = 0; i < 8; i++) {
-      candidates.push(join7(dir, "templates", "commonproject", "template"));
+      candidates.push(join8(dir, "templates", "commonproject", "template"));
       const parent = dirname4(dir);
       if (parent === dir) break;
       dir = parent;
     }
   } catch {
   }
-  candidates.push(join7(homedir3(), "code", "pjangler", "templates", "commonproject", "template"));
+  candidates.push(join8(homedir3(), "code", "pjangler", "templates", "commonproject", "template"));
   for (const c of candidates) {
-    if (existsSync6(join7(c, ".agents", "hooks", "hooks.master.json"))) return c;
+    if (existsSync6(join8(c, ".agents", "hooks", "hooks.master.json"))) return c;
   }
   throw new Error(
     "Could not locate the CommonProject template. Set PJANGLER_COMMONPROJECT_TEMPLATE to <repo>/templates/commonproject/template."
@@ -1166,8 +1337,8 @@ var CopyAgentHooksTree = class extends Command {
     const created = [];
     const skipped = [];
     for (const { rel, dir } of items) {
-      const src = join7(templateRoot, rel);
-      const dest = join7(this.context.targetDir, rel);
+      const src = join8(templateRoot, rel);
+      const dest = join8(this.context.targetDir, rel);
       if (!existsSync6(src)) continue;
       if (existsSync6(dest) && !this.context.force) {
         skipped.push(rel);
@@ -1192,7 +1363,7 @@ var WireMiseAgentHooks = class _WireMiseAgentHooks extends Command {
   static CR = "{{config_root}}";
   // mise's own runtime var — emitted literally
   async invoke() {
-    const misePath = join7(this.context.targetDir, "mise.toml");
+    const misePath = join8(this.context.targetDir, "mise.toml");
     if (!existsSync6(misePath)) {
       return {
         success: false,
@@ -1313,7 +1484,7 @@ var RECIPE_REGISTRY = {
     name: "mise",
     description: "Mise task runner and environment setup",
     class: MiseRecipe,
-    commands: ["AddMiseToml", "AddDotenv", "AddMiseTasksStructure", "AddMiseBaseToml", "AddMiseBaseScript"]
+    commands: ["AddMiseToml", "AddDotenv", "AddMiseTasksStructure", "AddMiseBaseToml", "AddMiseBaseScript", "AddMiseCodegraphScript"]
   },
   docker: {
     name: "docker",
@@ -1403,6 +1574,12 @@ var COMMAND_REGISTRY = {
     group: "mise",
     class: AddMiseBaseScript
   },
+  AddMiseCodegraphScript: {
+    name: "AddMiseCodegraphScript",
+    description: "Create .mise/scripts/codegraph.sh enter hook",
+    group: "mise",
+    class: AddMiseCodegraphScript
+  },
   AddDotenv: {
     name: "AddDotenv",
     description: "Create .env.example file",
@@ -1438,9 +1615,12 @@ function createRecipe(name, context) {
   return new info.class(context);
 }
 
+// src/index.ts
+import { cancel as cancel2, multiselect, text as text3, isCancel as isCancel5 } from "@clack/prompts";
+
 // src/parity/index.ts
-import { existsSync as existsSync7, lstatSync, mkdirSync as mkdirSync5, readFileSync as readFileSync3, readlinkSync, readdirSync, renameSync, symlinkSync, unlinkSync as unlinkSync3, writeFileSync as writeFileSync4, chmodSync, copyFileSync } from "node:fs";
-import { dirname as dirname5, join as join8, relative, resolve } from "node:path";
+import { existsSync as existsSync7, lstatSync, mkdirSync as mkdirSync5, readFileSync as readFileSync3, readlinkSync, readdirSync, renameSync, symlinkSync, unlinkSync as unlinkSync3, writeFileSync as writeFileSync4, chmodSync as chmodSync2, copyFileSync } from "node:fs";
+import { basename as basename2, dirname as dirname5, join as join9, relative, resolve } from "node:path";
 import { fileURLToPath as fileURLToPath3 } from "node:url";
 import { homedir as homedir4 } from "node:os";
 import { spawnSync as spawnSync4 } from "node:child_process";
@@ -1460,6 +1640,28 @@ enter = [
 patterns = ["AGENTS.md"]
 task = "link-agentfiles"
 
+[tasks.link-agentfiles]
+description = "Symlink all agent files to AGENTS.md"
+run = "{{config_root}}/.mise/scripts/link-agentfiles.sh"`;
+var LINK_AGENTFILES_HOOK_ENTRIES = [
+  "{{config_root}}/.mise/scripts/link-agentfiles.sh",
+  "op inject -i .env.op > .env"
+];
+var LINK_AGENTFILES_HOOKS_BLOCK = `# This block will handle the linking of
+# agent files to the main AGENTS.md file.
+#
+# TODO: Ensure this works for all levels of nesting.
+# i.e. All linked agent files MUST be siblings at
+# any given level of nesting.
+[hooks]
+enter = [
+  "{{config_root}}/.mise/scripts/link-agentfiles.sh",
+  "op inject -i .env.op > .env",
+]`;
+var LINK_AGENTFILES_WATCH_TASK_BLOCK = `[[watch_files]]
+patterns = ["AGENTS.md"]
+task = "link-agentfiles"
+
 [tasks.link-agentfiles]
 description = "Symlink all agent files to AGENTS.md"
 run = "{{config_root}}/.mise/scripts/link-agentfiles.sh"`;
@@ -1492,7 +1694,7 @@ run = "{{config_root}}/.mise/scripts/versioning.sh sync"
 function resolvePjanglerRoot() {
   let dir = dirname5(fileURLToPath3(import.meta.url));
   while (dir !== dirname5(dir)) {
-    if (existsSync7(join8(dir, "package.json")) && existsSync7(join8(dir, "templates", "commonproject", "copier.yml"))) {
+    if (existsSync7(join9(dir, "package.json")) && existsSync7(join9(dir, "templates", "commonproject", "copier.yml"))) {
       return dir;
     }
     dir = dirname5(dir);
@@ -1515,10 +1717,10 @@ function writeText(path, content) {
   ensureParent(path);
   writeFileSync4(path, content);
 }
-function tryParseJson(text3) {
-  if (!text3) return null;
+function tryParseJson(text4) {
+  if (!text4) return null;
   try {
-    return JSON.parse(text3);
+    return JSON.parse(text4);
   } catch {
     return null;
   }
@@ -1555,10 +1757,10 @@ function ensureSymlink(path, target, dryRun) {
   return { changed: true };
 }
 function bootstrapAgentsFile(repoRoot, dryRun) {
-  const agentsPath = join8(repoRoot, "AGENTS.md");
+  const agentsPath = join9(repoRoot, "AGENTS.md");
   if (existsSync7(agentsPath)) return { changedFiles: [], details: [] };
   for (const file of ["CLAUDE.md", "GEMINI.md"]) {
-    const source = join8(repoRoot, file);
+    const source = join9(repoRoot, file);
     if (!existsSync7(source)) continue;
     const stat = lstatSync(source);
     if (stat.isSymbolicLink()) continue;
@@ -1568,7 +1770,7 @@ function bootstrapAgentsFile(repoRoot, dryRun) {
     }
     return { changedFiles: [], details: [], blocked: `${file} exists but is not a regular file; cannot promote to AGENTS.md` };
   }
-  const readmePath = join8(repoRoot, "README.md");
+  const readmePath = join9(repoRoot, "README.md");
   if (existsSync7(readmePath)) {
     const stat = lstatSync(readmePath);
     if (!stat.isFile()) return { changedFiles: [], details: [], blocked: "README.md exists but is not a regular file; cannot copy to AGENTS.md" };
@@ -1577,9 +1779,9 @@ function bootstrapAgentsFile(repoRoot, dryRun) {
   }
   return { changedFiles: [], details: [], blocked: "AGENTS.md missing and no CLAUDE.md, GEMINI.md, or README.md source exists" };
 }
-function yamlGet(text3, keyPath) {
+function yamlGet(text4, keyPath) {
   const parts = keyPath.split(".");
-  const lines = text3.split("\n");
+  const lines = text4.split("\n");
   let start = 0;
   let indent = 0;
   for (let idx = 0; idx < parts.length; idx += 1) {
@@ -1608,36 +1810,36 @@ function yamlGet(text3, keyPath) {
   return "";
 }
 function discoverRoles(repoRoot) {
-  const rolesDir = join8(repoRoot, "agents", "hermes");
+  const rolesDir = join9(repoRoot, "agents", "hermes");
   if (!existsSync7(rolesDir)) return [];
   return readdirSync(rolesDir, { withFileTypes: true }).filter((entry) => entry.isDirectory()).map((entry) => {
-    const roleDir = join8(rolesDir, entry.name);
-    const roleYamlPath = join8(roleDir, "role.yaml");
+    const roleDir = join9(rolesDir, entry.name);
+    const roleYamlPath = join9(roleDir, "role.yaml");
     if (!existsSync7(roleYamlPath)) return null;
-    const text3 = readText(roleYamlPath);
-    const runtimeRepoRaw = yamlGet(text3, "runtime.github_repo");
+    const text4 = readText(roleYamlPath);
+    const runtimeRepoRaw = yamlGet(text4, "runtime.github_repo");
     return {
-      role: yamlGet(text3, "role") || entry.name,
+      role: yamlGet(text4, "role") || entry.name,
       roleDir,
       roleYamlPath,
-      repo: yamlGet(text3, "repo"),
-      agentId: yamlGet(text3, "agent_id"),
-      profileName: yamlGet(text3, "profile") || yamlGet(text3, "agent_id"),
-      displayName: yamlGet(text3, "display_name"),
-      purpose: yamlGet(text3, "purpose"),
-      botHandle: yamlGet(text3, "telegram.bot_username"),
+      repo: yamlGet(text4, "repo"),
+      agentId: yamlGet(text4, "agent_id"),
+      profileName: yamlGet(text4, "profile") || yamlGet(text4, "agent_id"),
+      displayName: yamlGet(text4, "display_name"),
+      purpose: yamlGet(text4, "purpose"),
+      botHandle: yamlGet(text4, "telegram.bot_username"),
       runtimeRepo: runtimeRepoRaw.includes("/") ? runtimeRepoRaw.split("/").slice(-1)[0] ?? runtimeRepoRaw : runtimeRepoRaw,
-      runtimeOwner: yamlGet(text3, "runtime.github_owner"),
-      planeWorkspace: yamlGet(text3, "ticket_provider.workspace") || yamlGet(text3, "plane.workspace"),
-      ticketProviderName: yamlGet(text3, "ticket_provider.name"),
-      ticketProviderBoardId: yamlGet(text3, "ticket_provider.board_id"),
-      ticketProviderBoardUrl: yamlGet(text3, "ticket_provider.board_url"),
-      ticketProviderIdentifier: yamlGet(text3, "plane.identifier")
+      runtimeOwner: yamlGet(text4, "runtime.github_owner"),
+      planeWorkspace: yamlGet(text4, "ticket_provider.workspace") || yamlGet(text4, "plane.workspace"),
+      ticketProviderName: yamlGet(text4, "ticket_provider.name"),
+      ticketProviderBoardId: yamlGet(text4, "ticket_provider.board_id"),
+      ticketProviderBoardUrl: yamlGet(text4, "ticket_provider.board_url"),
+      ticketProviderIdentifier: yamlGet(text4, "plane.identifier")
     };
   }).filter((value) => Boolean(value));
 }
 function registryPath(homeDir) {
-  return join8(homeDir, ".hermes", "agents-registry.yaml");
+  return join9(homeDir, ".hermes", "agents-registry.yaml");
 }
 function systemctlUser(args) {
   const result = spawnSync4("systemctl", ["--user", ...args], { encoding: "utf8" });
@@ -1648,7 +1850,7 @@ function systemctlUser(args) {
   };
 }
 function templateScript(ctx, name) {
-  const source = join8(ctx.pjanglerRoot, ".mise", "scripts", name);
+  const source = join9(ctx.pjanglerRoot, ".mise", "scripts", name);
   return existsSync7(source) ? readText(source) : void 0;
 }
 function templateVersioningScript(ctx) {
@@ -1657,23 +1859,39 @@ function templateVersioningScript(ctx) {
 function templateLinkAgentfilesScript(ctx) {
   return templateScript(ctx, "link-agentfiles.sh");
 }
+function renderGeneratedProjectMiseToml(ctx, template) {
+  const project = readProjectJson(ctx);
+  const projectName = String(project?.project_name ?? basename2(ctx.repoRoot) ?? "project");
+  return template.replace(/\{%\s*raw\s*%\}([\s\S]*?)\{%\s*endraw\s*%\}/g, "$1").replace(/\{\{\s*project_name\s*\}\}/g, projectName);
+}
+function ensureMiseTomlFromTemplate(ctx, changedFiles) {
+  const targetPath = join9(ctx.repoRoot, "mise.toml");
+  if (existsSync7(targetPath)) return false;
+  const sourcePath = join9(ctx.pjanglerRoot, "templates", "commonproject", "template", "mise.toml.jinja");
+  if (!existsSync7(sourcePath)) return false;
+  changedFiles.push(targetPath);
+  if (!ctx.dryRun) {
+    writeText(targetPath, renderGeneratedProjectMiseToml(ctx, readText(sourcePath)));
+  }
+  return true;
+}
 function templateVersionFilesConf(ctx, repoRoot) {
-  const packageJson = join8(repoRoot, "package.json");
+  const packageJson = join9(repoRoot, "package.json");
   return existsSync7(packageJson) ? "# mise-versioning manifest: <type> <path>\n# types: json toml cargo csproj gradle plain gittag\njson package.json\ngittag .\n" : "# mise-versioning manifest: <type> <path>\n# types: json toml cargo csproj gradle plain gittag\ngittag .\n";
 }
-function replaceOrAppendManagedBlock(text3, startMarker, block, beforePattern) {
-  if (startMarker.test(text3)) {
-    return text3.replace(/# >>> mise-versioning >>>[\s\S]*?# <<< mise-versioning <<</, block);
+function replaceOrAppendManagedBlock(text4, startMarker, block, beforePattern) {
+  if (startMarker.test(text4)) {
+    return text4.replace(/# >>> mise-versioning >>>[\s\S]*?# <<< mise-versioning <<</, block);
   }
   if (beforePattern) {
-    const match = text3.match(beforePattern);
+    const match = text4.match(beforePattern);
     if (match && typeof match.index === "number") {
-      return `${text3.slice(0, match.index).replace(/\s*$/, "\n\n")}${block}
+      return `${text4.slice(0, match.index).replace(/\s*$/, "\n\n")}${block}
 
-${text3.slice(match.index)}`;
+${text4.slice(match.index)}`;
     }
   }
-  return `${text3.replace(/\s*$/, "")}
+  return `${text4.replace(/\s*$/, "")}
 
 ${block}
 `;
@@ -1683,22 +1901,22 @@ var CONDITIONAL_HERMES_PATHS = ["agents/hermes/pm/hermes", "agent/hermes/pm/herm
 function requiredMisePathEntries(ctx) {
   const required = [...BASE_MISE_PATH_ENTRIES];
   for (const candidate of CONDITIONAL_HERMES_PATHS) {
-    if (existsSync7(join8(ctx.repoRoot, candidate)) && !required.includes(candidate)) required.push(candidate);
+    if (existsSync7(join9(ctx.repoRoot, candidate)) && !required.includes(candidate)) required.push(candidate);
   }
   return required;
 }
-function upsertMisePath(text3, required = BASE_MISE_PATH_ENTRIES) {
+function upsertMisePath(text4, required = BASE_MISE_PATH_ENTRIES) {
   const render = (values) => `_.path = [${values.map((value) => JSON.stringify(value)).join(", ")}]`;
-  const envMatch = text3.match(/(^|\n)(\[env\][\s\S]*?)(?=\n\[[^\]]+\]|$)/);
+  const envMatch = text4.match(/(^|\n)(\[env\][\s\S]*?)(?=\n\[[^\]]+\]|$)/);
   if (!envMatch || typeof envMatch.index !== "number") {
     return `[env]
 ${render(required)}
 
-${text3.replace(/^\s+/, "")}`;
+${text4.replace(/^\s+/, "")}`;
   }
-  const prefix = text3.slice(0, envMatch.index + envMatch[1].length);
+  const prefix = text4.slice(0, envMatch.index + envMatch[1].length);
   const section = envMatch[2];
-  const suffix = text3.slice(envMatch.index + envMatch[1].length + section.length);
+  const suffix = text4.slice(envMatch.index + envMatch[1].length + section.length);
   const pathLine = section.match(/^_\.path\s*=\s*\[([^\]]*)\]\s*$/m);
   if (!pathLine) {
     return `${prefix}${section.replace(/\n?$/, "\n")}${render(required)}${suffix}`;
@@ -1709,28 +1927,130 @@ ${text3.replace(/^\s+/, "")}`;
     if (!merged.includes(value)) merged.push(value);
   }
   const nextLine = render(merged);
-  if (pathLine[0] === nextLine) return text3;
+  if (pathLine[0] === nextLine) return text4;
   return `${prefix}${section.replace(pathLine[0], nextLine)}${suffix}`;
 }
-function upsertLinkAgentfilesBlock(text3, ctx) {
-  const withPath = upsertMisePath(text3, requiredMisePathEntries(ctx));
-  const existing = /# This block will handle the linking of[\s\S]*?\[tasks\.link-agentfiles\][\s\S]*?run = "\{\{config_root\}\}\/\.mise\/scripts\/link-agentfiles\.sh"/;
-  if (existing.test(withPath)) {
-    return withPath.replace(existing, LINK_AGENTFILES_BLOCK);
+function removeTomlSection(text4, headerPattern, marker, options) {
+  const lines = text4.split("\n");
+  let start = -1;
+  let end = -1;
+  for (let i = 0; i < lines.length; i++) {
+    if (!headerPattern.test(lines[i])) continue;
+    if (marker) {
+      let hasMarker = false;
+      for (let j = i + 1; j < lines.length && !/^\[[^\]]+\]/.test(lines[j]); j++) {
+        if (marker.test(lines[j])) {
+          hasMarker = true;
+          break;
+        }
+      }
+      if (!hasMarker) continue;
+    }
+    start = i;
+    for (let j = i + 1; j < lines.length; j++) {
+      if (/^\[[^\]]+\]/.test(lines[j])) {
+        end = j;
+        break;
+      }
+    }
+    if (end === -1) end = lines.length;
+    break;
+  }
+  if (start === -1) return text4;
+  if (options?.includePrecedingComments) {
+    while (start > 0 && lines[start - 1].trim().startsWith("#")) {
+      start--;
+    }
   }
-  const versioningIndex = withPath.indexOf("# >>> mise-versioning >>>");
+  const result = lines.slice(0, start).concat(lines.slice(end)).join("\n");
+  return result.replace(/\n{3,}/g, "\n\n").replace(/\n+$/, "\n");
+}
+function insertTomlBlockBeforeVersioning(text4, block) {
+  const versioningIndex = text4.indexOf("# >>> mise-versioning >>>");
   if (versioningIndex >= 0) {
-    return `${withPath.slice(0, versioningIndex).replace(/\s*$/, "\n\n")}${LINK_AGENTFILES_BLOCK}
+    return `${text4.slice(0, versioningIndex).replace(/\s*$/, "\n\n")}${block}
 
-${withPath.slice(versioningIndex)}`;
+${text4.slice(versioningIndex)}`;
   }
-  return `${withPath.replace(/\s*$/, "")}
+  return `${text4.replace(/\s*$/, "")}
 
-${LINK_AGENTFILES_BLOCK}
+${block}
 `;
 }
+function extractTomlStrings(text4) {
+  const values = [];
+  const stringPattern = /"((?:\\.|[^"\\])*)"|'([^']*)'/g;
+  for (const match of text4.matchAll(stringPattern)) {
+    if (match[1] !== void 0) {
+      try {
+        values.push(JSON.parse(`"${match[1]}"`));
+      } catch {
+        values.push(match[1]);
+      }
+    } else if (match[2] !== void 0) {
+      values.push(match[2]);
+    }
+  }
+  return values;
+}
+function isManagedHookEntry(value) {
+  const trimmed = value.trim();
+  return trimmed === "op inject -i .env.op > .env" || /(^|\/)link-agentfiles\.sh$/.test(trimmed);
+}
+function renderHookEntries(entries, indent = "") {
+  return [
+    `${indent}enter = [`,
+    ...entries.map((entry) => `${indent}  ${JSON.stringify(entry)},`),
+    `${indent}]`
+  ];
+}
+function upsertLinkAgentfilesHooks(text4) {
+  const lines = text4.split("\n");
+  const hooksStart = lines.findIndex((line) => /^\[hooks\]$/.test(line.trim()));
+  if (hooksStart === -1) return insertTomlBlockBeforeVersioning(text4, LINK_AGENTFILES_HOOKS_BLOCK);
+  let hooksEnd = lines.length;
+  for (let i = hooksStart + 1; i < lines.length; i++) {
+    if (/^\[[^\]]+\]/.test(lines[i].trim())) {
+      hooksEnd = i;
+      break;
+    }
+  }
+  let enterStart = -1;
+  let enterEnd = -1;
+  for (let i = hooksStart + 1; i < hooksEnd; i++) {
+    if (!/^\s*enter\s*=/.test(lines[i])) continue;
+    enterStart = i;
+    enterEnd = i + 1;
+    const afterEquals = lines[i].slice(lines[i].indexOf("=") + 1);
+    if (afterEquals.includes("[") && !afterEquals.includes("]")) {
+      while (enterEnd < hooksEnd && !lines[enterEnd].includes("]")) enterEnd++;
+      if (enterEnd < hooksEnd) enterEnd++;
+    }
+    break;
+  }
+  const existingBlock = enterStart >= 0 ? lines.slice(enterStart, enterEnd).join("\n") : "";
+  const preserved = extractTomlStrings(existingBlock).filter((entry) => !isManagedHookEntry(entry));
+  const merged = [...LINK_AGENTFILES_HOOK_ENTRIES];
+  for (const entry of preserved) {
+    if (!merged.includes(entry)) merged.push(entry);
+  }
+  const indent = enterStart >= 0 ? lines[enterStart].match(/^\s*/)?.[0] ?? "" : "";
+  const rendered = renderHookEntries(merged, indent);
+  if (enterStart >= 0) {
+    return lines.slice(0, enterStart).concat(rendered, lines.slice(enterEnd)).join("\n").replace(/\n{3,}/g, "\n\n").replace(/\n+$/, "\n");
+  }
+  return lines.slice(0, hooksStart + 1).concat(rendered, lines.slice(hooksStart + 1)).join("\n").replace(/\n{3,}/g, "\n\n").replace(/\n+$/, "\n");
+}
+function upsertLinkAgentfilesBlock(text4, ctx) {
+  const withPath = upsertMisePath(text4, requiredMisePathEntries(ctx));
+  if (withPath.includes(LINK_AGENTFILES_BLOCK)) return withPath;
+  let cleaned = removeTomlSection(withPath, /^\[tasks\.link-agentfiles\]$/, /link-agentfiles/, { includePrecedingComments: false });
+  cleaned = removeTomlSection(cleaned, /^\[\[watch_files\]\]$/, /AGENTS\.md/, { includePrecedingComments: false });
+  cleaned = upsertLinkAgentfilesHooks(cleaned);
+  return insertTomlBlockBeforeVersioning(cleaned, LINK_AGENTFILES_WATCH_TASK_BLOCK);
+}
 function readProjectJson(ctx) {
-  return tryParseJson(safeReadText(join8(ctx.repoRoot, ".project.json")));
+  return tryParseJson(safeReadText(join9(ctx.repoRoot, ".project.json")));
 }
 function canonicalProjectJson(ctx) {
   const roles = discoverRoles(ctx.repoRoot);
@@ -1742,28 +2062,40 @@ function canonicalProjectJson(ctx) {
     workspace: String((existing.ticket_provider?.workspace ?? firstRole?.planeWorkspace ?? "") || ""),
     identifier: String((existing.ticket_provider?.identifier ?? firstRole?.ticketProviderIdentifier ?? "") || ""),
     board_id: String((existing.ticket_provider?.board_id ?? firstRole?.ticketProviderBoardId ?? "") || ""),
-    board_url: String((existing.ticket_provider?.board_url ?? firstRole?.ticketProviderBoardUrl ?? "") || "")
+    board_url: String((existing.ticket_provider?.board_url ?? firstRole?.ticketProviderBoardUrl ?? "") || ""),
+    state: String((existing.ticket_provider?.state ?? "planned") || "planned")
   };
+  const existingAgents = existing.agents ?? {};
+  const discoveredAgents = Object.fromEntries(
+    roles.map((role) => [
+      role.agentId || `${slug}-${role.role}`,
+      {
+        role: role.role,
+        role_dir: relative(ctx.repoRoot, role.roleDir)
+      }
+    ])
+  );
+  const agents = { ...existingAgents };
+  for (const [agentId, discovered] of Object.entries(discoveredAgents)) {
+    const existingAgent = existingAgents[agentId] ?? {};
+    agents[agentId] = {
+      role: discovered.role,
+      role_dir: discovered.role_dir,
+      provisioning_state: existingAgent.provisioning_state
+    };
+  }
   return {
     project_name: String(existing.project_name ?? titleCaseSlug(slug)),
     project_description: String(existing.project_description ?? ""),
     project_slug: slug,
     repo_path: ctx.repoRoot,
     ticket_provider: ticketProvider,
-    agents: Object.fromEntries(
-      roles.map((role) => [
-        role.agentId || `${slug}-${role.role}`,
-        {
-          role: role.role,
-          role_dir: relative(ctx.repoRoot, role.roleDir)
-        }
-      ])
-    )
+    agents
   };
 }
 function projectJsonFinding(ctx) {
-  const projectPath = join8(ctx.repoRoot, ".project.json");
-  const planeJsonPath = join8(ctx.repoRoot, ".plane.json");
+  const projectPath = join9(ctx.repoRoot, ".project.json");
+  const planeJsonPath = join9(ctx.repoRoot, ".plane.json");
   const details = [];
   const data = readProjectJson(ctx);
   const roles = discoverRoles(ctx.repoRoot);
@@ -1790,7 +2122,7 @@ function projectJsonFinding(ctx) {
     }
   }
   const ticketProvider = data.ticket_provider ?? {};
-  for (const key of ["type", "workspace", "identifier", "board_id", "board_url"]) {
+  for (const key of ["type", "workspace", "identifier", "board_id", "board_url", "state"]) {
     if (!(key in ticketProvider)) details.push(`ticket_provider.${key} missing`);
   }
   if (existsSync7(planeJsonPath)) details.push(".plane.json should not exist once .project.json is canonical");
@@ -1877,9 +2209,9 @@ function copyMissingRecursive(sourceDir, targetDir, changedFiles, dryRun, skip)
   if (!existsSync7(sourceDir)) return;
   mkdirSync5(targetDir, { recursive: true });
   for (const entry of readdirSync(sourceDir, { withFileTypes: true })) {
-    const sourcePath = join8(sourceDir, entry.name);
+    const sourcePath = join9(sourceDir, entry.name);
     if (skip?.(sourcePath)) continue;
-    const targetPath = join8(targetDir, entry.name);
+    const targetPath = join9(targetDir, entry.name);
     if (entry.isDirectory()) {
       copyMissingRecursive(sourcePath, targetPath, changedFiles, dryRun, skip);
       continue;
@@ -1893,7 +2225,7 @@ function copyMissingRecursive(sourceDir, targetDir, changedFiles, dryRun, skip)
   }
 }
 function upsertSubmodule(repoRoot, role, changedFiles, dryRun) {
-  const gitmodulesPath = join8(repoRoot, ".gitmodules");
+  const gitmodulesPath = join9(repoRoot, ".gitmodules");
   const repoName = role.runtimeRepo || `agent-hm-${role.repo}-${role.role}`;
   const owner = role.runtimeOwner || "delorenj";
   const block = `[submodule "agents/hermes/${role.role}/runtime"]
@@ -1937,9 +2269,9 @@ ${block}`) : `${current.replace(/\s*$/, "\n")}${block}`;
   return path;
 }
 function profileMetaInheritsDefault(path) {
-  const text3 = safeReadText(path);
+  const text4 = safeReadText(path);
   return Boolean(
-    text3 && /^config:\s*$/m.test(text3) && /^\s+inherit_from:\s*default\s*$/m.test(text3) && /^\s+save_mode:\s*delta\s*$/m.test(text3)
+    text4 && /^config:\s*$/m.test(text4) && /^\s+inherit_from:\s*default\s*$/m.test(text4) && /^\s+save_mode:\s*delta\s*$/m.test(text4)
   );
 }
 function upsertInheritedProfileMeta(path, changedFiles, dryRun) {
@@ -1993,21 +2325,21 @@ var RULES = [
     id: "mise.config-root",
     title: "mise config_root + AGENTS link hooks",
     audit: (ctx) => {
-      const misePath = join8(ctx.repoRoot, "mise.toml");
+      const misePath = join9(ctx.repoRoot, "mise.toml");
       if (!existsSync7(misePath)) {
         return { id: "mise.config-root", title: "mise config_root + AGENTS link hooks", status: "fail", summary: "mise.toml missing", details: [], fixable: true };
       }
-      const text3 = readText(misePath);
+      const text4 = readText(misePath);
       const details = [];
-      const linkAgentfilesPath = join8(ctx.repoRoot, ".mise", "scripts", "link-agentfiles.sh");
+      const linkAgentfilesPath = join9(ctx.repoRoot, ".mise", "scripts", "link-agentfiles.sh");
       if (!existsSync7(linkAgentfilesPath)) details.push(".mise/scripts/link-agentfiles.sh missing");
-      const pathValues = [...(text3.match(/^_\.path\s*=\s*\[([^\]]*)\]/m)?.[1] ?? "").matchAll(/"([^"]+)"/g)].map((match) => match[1]);
+      const pathValues = [...(text4.match(/^_\.path\s*=\s*\[([^\]]*)\]/m)?.[1] ?? "").matchAll(/"([^"]+)"/g)].map((match) => match[1]);
       const missingPathValues = requiredMisePathEntries(ctx).filter((value) => !pathValues.includes(value));
       if (missingPathValues.length) details.push(`[env]._.path should include ${missingPathValues.join(", ")}`);
-      if (!text3.includes('"{{config_root}}/.mise/scripts/link-agentfiles.sh"')) details.push("link-agentfiles must use raw {{config_root}} guard");
-      if (!text3.includes("op inject -i .env.op > .env")) details.push("[hooks].enter must materialize .env from .env.op");
-      if (!text3.includes('patterns = ["AGENTS.md"]')) details.push("watch_files must monitor AGENTS.md");
-      if (!text3.includes('task = "link-agentfiles"')) details.push("watch_files must dispatch link-agentfiles task");
+      if (!text4.includes('"{{config_root}}/.mise/scripts/link-agentfiles.sh"')) details.push("link-agentfiles must use raw {{config_root}} guard");
+      if (!text4.includes("op inject -i .env.op > .env")) details.push("[hooks].enter must materialize .env from .env.op");
+      if (!text4.includes('patterns = ["AGENTS.md"]')) details.push("watch_files must monitor AGENTS.md");
+      if (!text4.includes('task = "link-agentfiles"')) details.push("watch_files must dispatch link-agentfiles task");
       return {
         id: "mise.config-root",
         title: "mise config_root + AGENTS link hooks",
@@ -2018,19 +2350,26 @@ var RULES = [
       };
     },
     migrate: (ctx, finding) => {
-      const path = join8(ctx.repoRoot, "mise.toml");
+      const path = join9(ctx.repoRoot, "mise.toml");
       const changedFiles = [];
+      const details = [];
       if (!existsSync7(path)) {
-        return { id: finding.id, title: finding.title, status: "blocked", summary: "mise.toml missing; initialize mise first", changedFiles, details: [] };
+        if (!ensureMiseTomlFromTemplate(ctx, changedFiles)) {
+          return { id: finding.id, title: finding.title, status: "blocked", summary: "mise.toml missing and no generated-project mise template available to initialize from", changedFiles, details: [] };
+        }
+        details.push("Initialized mise.toml from generated-project template");
+        if (ctx.dryRun) {
+          return { id: finding.id, title: finding.title, status: "applied", summary: "Would initialize mise.toml from generated-project template", changedFiles, details };
+        }
       }
-      let text3 = readText(path);
-      const next = upsertLinkAgentfilesBlock(text3, ctx);
-      if (next !== text3) {
-        changedFiles.push(path);
+      let text4 = readText(path);
+      const next = upsertLinkAgentfilesBlock(text4, ctx);
+      if (next !== text4) {
+        if (!changedFiles.includes(path)) changedFiles.push(path);
         if (!ctx.dryRun) writeText(path, next);
-        text3 = next;
+        text4 = next;
       }
-      const linkAgentfilesPath = join8(ctx.repoRoot, ".mise", "scripts", "link-agentfiles.sh");
+      const linkAgentfilesPath = join9(ctx.repoRoot, ".mise", "scripts", "link-agentfiles.sh");
       const expectedScript = templateLinkAgentfilesScript(ctx);
       if (expectedScript === void 0) {
         return { id: finding.id, title: finding.title, status: "blocked", summary: "pjangler install is missing .mise/scripts/link-agentfiles.sh \u2014 update @delorenj/pjangler (broken package)", changedFiles, details: [] };
@@ -2039,7 +2378,7 @@ var RULES = [
         changedFiles.push(linkAgentfilesPath);
         if (!ctx.dryRun) {
           writeText(linkAgentfilesPath, expectedScript);
-          chmodSync(linkAgentfilesPath, 493);
+          chmodSync2(linkAgentfilesPath, 493);
         }
       }
       return {
@@ -2057,11 +2396,11 @@ var RULES = [
     title: "managed mise versioning block",
     audit: (ctx) => {
       const details = [];
-      const misePath = join8(ctx.repoRoot, "mise.toml");
-      const versioningPath = join8(ctx.repoRoot, ".mise", "scripts", "versioning.sh");
-      const manifestPath = join8(ctx.repoRoot, ".mise", "version-files.conf");
-      const text3 = safeReadText(misePath);
-      if (!text3?.includes("# >>> mise-versioning >>>")) details.push("mise versioning managed block missing");
+      const misePath = join9(ctx.repoRoot, "mise.toml");
+      const versioningPath = join9(ctx.repoRoot, ".mise", "scripts", "versioning.sh");
+      const manifestPath = join9(ctx.repoRoot, ".mise", "version-files.conf");
+      const text4 = safeReadText(misePath);
+      if (!text4?.includes("# >>> mise-versioning >>>")) details.push("mise versioning managed block missing");
       if (!existsSync7(versioningPath)) details.push(".mise/scripts/versioning.sh missing");
       if (!existsSync7(manifestPath)) details.push(".mise/version-files.conf missing");
       return {
@@ -2075,17 +2414,24 @@ var RULES = [
     },
     migrate: (ctx, finding) => {
       const changedFiles = [];
-      const misePath = join8(ctx.repoRoot, "mise.toml");
+      const details = [];
+      const misePath = join9(ctx.repoRoot, "mise.toml");
       if (!existsSync7(misePath)) {
-        return { id: finding.id, title: finding.title, status: "blocked", summary: "mise.toml missing; cannot inject versioning block", changedFiles, details: [] };
+        if (!ensureMiseTomlFromTemplate(ctx, changedFiles)) {
+          return { id: finding.id, title: finding.title, status: "blocked", summary: "mise.toml missing and no generated-project mise template available to initialize from", changedFiles, details: [] };
+        }
+        details.push("Initialized mise.toml from generated-project template");
+        if (ctx.dryRun) {
+          return { id: finding.id, title: finding.title, status: "applied", summary: "Would initialize mise.toml from generated-project template", changedFiles, details };
+        }
       }
       const currentMise = readText(misePath);
       const nextMise = replaceOrAppendManagedBlock(currentMise, /# >>> mise-versioning >>>/, VERSIONING_BLOCK, /^\[tasks\.build\]/m);
       if (nextMise !== currentMise) {
-        changedFiles.push(misePath);
+        if (!changedFiles.includes(misePath)) changedFiles.push(misePath);
         if (!ctx.dryRun) writeText(misePath, nextMise);
       }
-      const versioningPath = join8(ctx.repoRoot, ".mise", "scripts", "versioning.sh");
+      const versioningPath = join9(ctx.repoRoot, ".mise", "scripts", "versioning.sh");
       const expectedScript = templateVersioningScript(ctx);
       if (expectedScript === void 0) {
         return { id: finding.id, title: finding.title, status: "blocked", summary: "pjangler install is missing .mise/scripts/versioning.sh \u2014 update @delorenj/pjangler (broken package)", changedFiles, details: [] };
@@ -2094,10 +2440,10 @@ var RULES = [
         changedFiles.push(versioningPath);
         if (!ctx.dryRun) {
           writeText(versioningPath, expectedScript);
-          chmodSync(versioningPath, 493);
+          chmodSync2(versioningPath, 493);
         }
       }
-      const manifestPath = join8(ctx.repoRoot, ".mise", "version-files.conf");
+      const manifestPath = join9(ctx.repoRoot, ".mise", "version-files.conf");
       const expectedManifest = templateVersionFilesConf(ctx, ctx.repoRoot);
       if (safeReadText(manifestPath) !== expectedManifest) {
         changedFiles.push(manifestPath);
@@ -2117,9 +2463,9 @@ var RULES = [
     id: "sot.agent-symlinks",
     title: "AGENTS/CLAUDE/GEMINI symlink contract",
     audit: (ctx) => {
-      const agentsPath = join8(ctx.repoRoot, "AGENTS.md");
+      const agentsPath = join9(ctx.repoRoot, "AGENTS.md");
       if (!existsSync7(agentsPath)) {
-        const fallbackSources = ["CLAUDE.md", "GEMINI.md", "README.md"].filter((file) => existsSync7(join8(ctx.repoRoot, file)));
+        const fallbackSources = ["CLAUDE.md", "GEMINI.md", "README.md"].filter((file) => existsSync7(join9(ctx.repoRoot, file)));
         if (fallbackSources.length === 0) {
           return { id: "sot.agent-symlinks", title: "AGENTS/CLAUDE/GEMINI symlink contract", status: "skip", summary: "AGENTS.md missing; symlink contract not applicable", details: [], fixable: false };
         }
@@ -2134,7 +2480,7 @@ var RULES = [
       }
       const details = [];
       for (const file of ["CLAUDE.md", "GEMINI.md"]) {
-        const full = join8(ctx.repoRoot, file);
+        const full = join9(ctx.repoRoot, file);
         const target = readSymlinkTarget(full);
         if (target !== "AGENTS.md") details.push(`${file} should be a symlink to AGENTS.md`);
       }
@@ -2158,7 +2504,7 @@ var RULES = [
         return { id: finding.id, title: finding.title, status: "blocked", summary: "AGENTS.md missing; cannot derive canonical agent file", changedFiles, details: [bootstrap.blocked] };
       }
       for (const file of ["CLAUDE.md", "GEMINI.md"]) {
-        const full = join8(ctx.repoRoot, file);
+        const full = join9(ctx.repoRoot, file);
         const result = ensureSymlink(full, "AGENTS.md", ctx.dryRun);
         if (result.blocked) blockedDetails.push(result.blocked);
         if (result.changed) changedFiles.push(full);
@@ -2180,7 +2526,7 @@ var RULES = [
     migrate: (ctx, finding) => {
       const changedFiles = [];
       const details = [];
-      const path = join8(ctx.repoRoot, ".project.json");
+      const path = join9(ctx.repoRoot, ".project.json");
       const existing = readProjectJson(ctx) ?? {};
       const canonical = canonicalProjectJson(ctx);
       const merged = { ...existing, ...canonical };
@@ -2190,7 +2536,7 @@ var RULES = [
         changedFiles.push(path);
         if (!ctx.dryRun) writeText(path, expected);
       }
-      const planeJson = join8(ctx.repoRoot, ".plane.json");
+      const planeJson = join9(ctx.repoRoot, ".plane.json");
       if (existsSync7(planeJson)) {
         const backup = `${planeJson}.migrated-backup`;
         if (existsSync7(backup)) {
@@ -2215,14 +2561,15 @@ var RULES = [
     title: ".env.op + gitignore secrets contract",
     audit: (ctx) => {
       const details = [];
-      const envOp = safeReadText(join8(ctx.repoRoot, ".env.op"));
-      const gitignore = safeReadText(join8(ctx.repoRoot, ".gitignore"));
+      const envOp = safeReadText(join9(ctx.repoRoot, ".env.op"));
+      const gitignore = safeReadText(join9(ctx.repoRoot, ".gitignore"));
       if (!envOp) {
         details.push(".env.op missing");
       } else {
         const invalidLines = envOp.split("\n").map((line) => line.trim()).filter((line) => line && !line.startsWith("#") && line.includes("=")).filter((line) => {
           const value = line.slice(line.indexOf("=") + 1).trim();
-          return !value.startsWith("op://") && !/^https?:\/\//.test(value) && !/^[A-Za-z0-9_.:-]+$/.test(value);
+          const quotedLiteral = /^"[^"\r\n]*"$/.test(value) || /^'[^'\r\n]*'$/.test(value);
+          return !value.startsWith("op://") && !/^https?:\/\//.test(value) && !/^[A-Za-z0-9_.:-]+$/.test(value) && !quotedLiteral;
         });
         if (invalidLines.length) details.push(`.env.op has non-reference values that do not look like safe literals: ${invalidLines.join(", ")}`);
       }
@@ -2241,12 +2588,12 @@ var RULES = [
     migrate: (ctx, finding) => {
       const changedFiles = [];
       const details = [];
-      const envOpPath = join8(ctx.repoRoot, ".env.op");
+      const envOpPath = join9(ctx.repoRoot, ".env.op");
       if (!existsSync7(envOpPath)) {
         changedFiles.push(envOpPath);
-        if (!ctx.dryRun) writeText(envOpPath, readText(join8(ctx.pjanglerRoot, "templates", "commonproject", "template", ".env.op")));
+        if (!ctx.dryRun) writeText(envOpPath, readText(join9(ctx.pjanglerRoot, "templates", "commonproject", "template", ".env.op")));
       }
-      const gitignorePath = join8(ctx.repoRoot, ".gitignore");
+      const gitignorePath = join9(ctx.repoRoot, ".gitignore");
       const gitignore = safeReadText(gitignorePath) ?? "";
       const requiredBlock = `# Secrets \u2014 .env is materialized by \`op inject -i .env.op > .env\` on mise enter.
 # NEVER commit it. .env.op holds only 1Password references or safe literals and IS committed.
@@ -2273,20 +2620,20 @@ var RULES = [
     title: ".copier-answers.yml provenance + drift report",
     audit: (ctx) => {
       const details = [];
-      const path = join8(ctx.repoRoot, ".copier-answers.yml");
-      const text3 = safeReadText(path);
+      const path = join9(ctx.repoRoot, ".copier-answers.yml");
+      const text4 = safeReadText(path);
       const project = readProjectJson(ctx);
-      if (!text3) {
+      if (!text4) {
         details.push(".copier-answers.yml missing");
       } else {
-        if (!text3.startsWith("# Changes here will be overwritten by Copier; NEVER EDIT MANUALLY")) details.push("missing Copier overwrite warning header");
-        if (!text3.includes("_src_path:")) details.push("_src_path missing");
+        if (!text4.startsWith("# Changes here will be overwritten by Copier; NEVER EDIT MANUALLY")) details.push("missing Copier overwrite warning header");
+        if (!text4.includes("_src_path:")) details.push("_src_path missing");
         if (project?.project_name) {
-          const nameMatch = text3.match(/project_name:\s*(.+)/);
+          const nameMatch = text4.match(/project_name:\s*(.+)/);
           if (!nameMatch || nameMatch[1]?.trim() !== String(project.project_name)) details.push("project_name drift between .copier-answers.yml and .project.json");
         }
         if (project?.project_description) {
-          const descMatch = text3.match(/project_description:\s*([\s\S]*?)(?=\n\w|$)/);
+          const descMatch = text4.match(/project_description:\s*([\s\S]*?)(?=\n\w|$)/);
           const yamlDesc = descMatch?.[1]?.replace(/\n\s+/g, " ").trim() ?? "";
           if (yamlDesc !== String(project.project_description)) details.push("project_description drift between .copier-answers.yml and .project.json");
         }
@@ -2303,16 +2650,16 @@ var RULES = [
     migrate: (ctx, finding) => {
       const changedFiles = [];
       const project = canonicalProjectJson(ctx);
-      const text3 = `# Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
-_src_path: ${join8(ctx.pjanglerRoot, "templates", "commonproject")}
+      const text4 = `# Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
+_src_path: ${join9(ctx.pjanglerRoot, "templates", "commonproject")}
 project_description: ${String(project.project_description)}
 project_name: ${String(project.project_name)}
 ticket_provider: ${String(project.ticket_provider?.type ?? "plane")}
 `;
-      const path = join8(ctx.repoRoot, ".copier-answers.yml");
-      if (safeReadText(path) !== text3) {
+      const path = join9(ctx.repoRoot, ".copier-answers.yml");
+      if (safeReadText(path) !== text4) {
         changedFiles.push(path);
-        if (!ctx.dryRun) writeText(path, text3);
+        if (!ctx.dryRun) writeText(path, text4);
       }
       return {
         id: finding.id,
@@ -2328,15 +2675,15 @@ ticket_provider: ${String(project.ticket_provider?.type ?? "plane")}
     id: "bmad.scaffold",
     title: "BMAD modules/docs scaffold",
     audit: (ctx) => {
-      const sourceRoot = join8(ctx.pjanglerRoot, "templates", "commonproject", "_bmad");
-      const targetRoot = join8(ctx.repoRoot, "_bmad");
+      const sourceRoot = join9(ctx.pjanglerRoot, "templates", "commonproject", "_bmad");
+      const targetRoot = join9(ctx.repoRoot, "_bmad");
       const sentinels = [
-        join8("core", "config.yaml"),
-        join8("custom", "config.yaml"),
-        join8("custom", "workflows", "ticket-lifecycle", "workflow.yaml"),
-        join8("bmm", "workflows", "workflow-status", "workflow.yaml")
+        join9("core", "config.yaml"),
+        join9("custom", "config.yaml"),
+        join9("custom", "workflows", "ticket-lifecycle", "workflow.yaml"),
+        join9("bmm", "workflows", "workflow-status", "workflow.yaml")
       ];
-      const missing = sentinels.filter((file) => existsSync7(join8(sourceRoot, file)) && !existsSync7(join8(targetRoot, file)));
+      const missing = sentinels.filter((file) => existsSync7(join9(sourceRoot, file)) && !existsSync7(join9(targetRoot, file)));
       return {
         id: "bmad.scaffold",
         title: "BMAD modules/docs scaffold",
@@ -2348,7 +2695,7 @@ ticket_provider: ${String(project.ticket_provider?.type ?? "plane")}
     },
     migrate: (ctx, finding) => {
       const changedFiles = [];
-      copyMissingRecursive(join8(ctx.pjanglerRoot, "templates", "commonproject", "_bmad"), join8(ctx.repoRoot, "_bmad"), changedFiles, ctx.dryRun);
+      copyMissingRecursive(join9(ctx.pjanglerRoot, "templates", "commonproject", "_bmad"), join9(ctx.repoRoot, "_bmad"), changedFiles, ctx.dryRun);
       return {
         id: finding.id,
         title: finding.title,
@@ -2370,11 +2717,11 @@ ticket_provider: ${String(project.ticket_provider?.type ?? "plane")}
       }
       const details = [];
       for (const rel of ["role.yaml", "SOUL.md", "hermes", ".gitignore", ".scripts/70-systemd.sh", ".scripts/heartbeat.sh", ".scripts/checkpoint.sh", ".runtime-scaffold/README.md", "runtime/memories/MEMORY.md", "runtime/bloodbank-consumer.py"]) {
-        if (!existsSync7(join8(role.roleDir, rel))) details.push(`missing ${relative(ctx.repoRoot, join8(role.roleDir, rel))}`);
+        if (!existsSync7(join9(role.roleDir, rel))) details.push(`missing ${relative(ctx.repoRoot, join9(role.roleDir, rel))}`);
       }
-      const gitmodules = safeReadText(join8(ctx.repoRoot, ".gitmodules")) ?? "";
+      const gitmodules = safeReadText(join9(ctx.repoRoot, ".gitmodules")) ?? "";
       if (!gitmodules.includes(`agents/hermes/${role.role}/runtime`)) details.push(".gitmodules missing pm runtime submodule entry");
-      if (!profileMetaInheritsDefault(join8(role.roleDir, "runtime", "profile.yaml"))) {
+      if (!profileMetaInheritsDefault(join9(role.roleDir, "runtime", "profile.yaml"))) {
         details.push("runtime/profile.yaml missing inherited default config metadata");
       }
       const registry = safeReadText(registryPath(ctx.homeDir));
@@ -2395,21 +2742,21 @@ ticket_provider: ${String(project.ticket_provider?.type ?? "plane")}
       if (!role) {
         return { id: finding.id, title: finding.title, status: "blocked", summary: "No pm role present", changedFiles, details: [] };
       }
-      const templateRoleDir = join8(ctx.pjanglerRoot, "templates", "hermes-agent", "template");
-      writeIfDifferent(join8(role.roleDir, "SOUL.md"), renderSoul(role), ctx.dryRun, changedFiles);
-      writeIfDifferent(join8(role.roleDir, "hermes"), renderHermesWrapper(role), ctx.dryRun, changedFiles, 493);
-      writeIfDifferent(join8(role.roleDir, ".gitignore"), readText(join8(templateRoleDir, ".gitignore.jinja")).replace(/\{\{ role \}\}/g, role.role), ctx.dryRun, changedFiles);
-      copyMissingRecursive(join8(templateRoleDir, ".runtime-scaffold"), join8(role.roleDir, ".runtime-scaffold"), changedFiles, ctx.dryRun);
-      copyMissingRecursive(join8(templateRoleDir, ".runtime-scaffold"), join8(role.roleDir, "runtime"), changedFiles, ctx.dryRun);
-      copyMissingRecursive(join8(templateRoleDir, ".scripts"), join8(role.roleDir, ".scripts"), changedFiles, ctx.dryRun, (source) => source.endsWith("sentinel.prompt.md.jinja"));
-      const promptSource = join8(templateRoleDir, ".scripts", "sentinel.prompt.md.jinja");
-      const promptTarget = join8(role.roleDir, ".scripts", "sentinel.prompt.md");
+      const templateRoleDir = join9(ctx.pjanglerRoot, "templates", "hermes-agent", "template");
+      writeIfDifferent(join9(role.roleDir, "SOUL.md"), renderSoul(role), ctx.dryRun, changedFiles);
+      writeIfDifferent(join9(role.roleDir, "hermes"), renderHermesWrapper(role), ctx.dryRun, changedFiles, 493);
+      writeIfDifferent(join9(role.roleDir, ".gitignore"), readText(join9(templateRoleDir, ".gitignore.jinja")).replace(/\{\{ role \}\}/g, role.role), ctx.dryRun, changedFiles);
+      copyMissingRecursive(join9(templateRoleDir, ".runtime-scaffold"), join9(role.roleDir, ".runtime-scaffold"), changedFiles, ctx.dryRun);
+      copyMissingRecursive(join9(templateRoleDir, ".runtime-scaffold"), join9(role.roleDir, "runtime"), changedFiles, ctx.dryRun);
+      copyMissingRecursive(join9(templateRoleDir, ".scripts"), join9(role.roleDir, ".scripts"), changedFiles, ctx.dryRun, (source) => source.endsWith("sentinel.prompt.md.jinja"));
+      const promptSource = join9(templateRoleDir, ".scripts", "sentinel.prompt.md.jinja");
+      const promptTarget = join9(role.roleDir, ".scripts", "sentinel.prompt.md");
       if (existsSync7(promptSource) && !existsSync7(promptTarget)) {
         const prompt = readText(promptSource).replace(/\{\{ agent_id \}\}/g, role.agentId).replace(/\{\{ role \}\}/g, role.role).replace(/\{\{ target_repo \}\}/g, role.repo).replace(/\{\{ display_name \}\}/g, role.displayName || role.agentId);
         writeIfDifferent(promptTarget, prompt, ctx.dryRun, changedFiles);
       }
       upsertSubmodule(ctx.repoRoot, role, changedFiles, ctx.dryRun);
-      const profileMetaUpdated = upsertInheritedProfileMeta(join8(role.roleDir, "runtime", "profile.yaml"), changedFiles, ctx.dryRun);
+      const profileMetaUpdated = upsertInheritedProfileMeta(join9(role.roleDir, "runtime", "profile.yaml"), changedFiles, ctx.dryRun);
       if (profileMetaUpdated) details.push(`updated ${profileMetaUpdated}`);
       const registryUpdated = upsertRegistryEntry(role, ctx.homeDir, changedFiles, ctx.dryRun);
       if (registryUpdated) details.push(`updated ${registryUpdated}`);
@@ -2463,9 +2810,9 @@ ticket_provider: ${String(project.ticket_provider?.type ?? "plane")}
         return { id: finding.id, title: finding.title, status: "blocked", summary: "systemd --user unavailable on this host", changedFiles, details };
       }
       for (const role of roles) {
-        const sysDir = join8(ctx.homeDir, ".config", "systemd", "user");
+        const sysDir = join9(ctx.homeDir, ".config", "systemd", "user");
         const units = [`hermes-${role.agentId}-gateway.service`, `hermes-${role.agentId}-consumer.service`, `hermes-${role.agentId}-heartbeat.timer`];
-        const allUnitsPresent = units.every((unit) => existsSync7(join8(sysDir, unit)));
+        const allUnitsPresent = units.every((unit) => existsSync7(join9(sysDir, unit)));
         if (allUnitsPresent) {
           if (ctx.dryRun) {
             details.push(`would run: systemctl --user enable --now ${units.join(" ")}`);
@@ -2477,7 +2824,7 @@ ticket_provider: ${String(project.ticket_provider?.type ?? "plane")}
           }
           continue;
         }
-        for (const script of [join8(role.roleDir, ".scripts", "70-systemd.sh")]) {
+        for (const script of [join9(role.roleDir, ".scripts", "70-systemd.sh")]) {
           if (!script || !existsSync7(script)) continue;
           if (ctx.dryRun) {
             details.push(`would run: bash ${script}`);
@@ -2505,9 +2852,12 @@ function writeIfDifferent(path, content, dryRun, changedFiles, mode) {
   changedFiles.push(path);
   if (!dryRun) {
     writeText(path, normalized);
-    if (mode) chmodSync(path, mode);
+    if (mode) chmodSync2(path, mode);
   }
 }
+function getParityRuleIds() {
+  return RULES.map((rule) => rule.id);
+}
 function runAudit(repoArg) {
   const pjanglerRoot = resolvePjanglerRoot();
   const ctx = {
@@ -2524,7 +2874,7 @@ function runAudit(repoArg) {
     rules
   };
 }
-function runMigration(selector, repoArg, dryRun, all) {
+function runMigrationForRules(ruleIds, repoArg, dryRun) {
   const pjanglerRoot = resolvePjanglerRoot();
   const ctx = {
     repoRoot: resolve(repoArg ?? process.cwd()),
@@ -2532,9 +2882,9 @@ function runMigration(selector, repoArg, dryRun, all) {
     pjanglerRoot,
     homeDir: homedir4()
   };
-  const selected = all ? RULES : RULES.filter((rule) => rule.id === selector);
+  const selected = RULES.filter((rule) => ruleIds.includes(rule.id));
   if (!selected.length) {
-    throw new Error(`Unknown parity rule: ${selector}`);
+    throw new Error(`Unknown parity rules: ${ruleIds.join(", ")}`);
   }
   const results = selected.map((rule) => {
     try {
@@ -2560,43 +2910,490 @@ function runMigration(selector, repoArg, dryRun, all) {
     changedFiles
   };
 }
+function runMigration(selector, repoArg, dryRun, all) {
+  const ruleIds = all ? RULES.map((rule) => rule.id) : selector ? [selector] : [];
+  return runMigrationForRules(ruleIds, repoArg, dryRun);
+}
+function prettyTimestamp(iso) {
+  const match = /^(\d{4}-\d{2}-\d{2})T(\d{2}:\d{2}:\d{2})/.exec(iso);
+  return match ? `${match[1]} ${match[2]} UTC` : iso;
+}
 function formatAuditReport(report) {
-  const lines = [`repo: ${report.repo}`, `ok: ${report.ok}`, `audited_at: ${report.auditedAt}`, "rules:"];
+  const counts = {};
+  for (const rule of report.rules) counts[rule.status] = (counts[rule.status] ?? 0) + 1;
+  const idWidth = report.rules.reduce((width, rule) => Math.max(width, rule.id.length), 0);
+  const tally = [];
+  if (counts.pass) tally.push(green(`${counts.pass} passed`));
+  if (counts.fail) tally.push(red(`${counts.fail} failed`));
+  if (counts.warn) tally.push(yellow(`${counts.warn} warning${counts.warn === 1 ? "" : "s"}`));
+  if (counts.skip) tally.push(gray(`${counts.skip} skipped`));
+  const overall = report.ok ? `${green(glyph.pass)} ${bold("Parity audit passed")}` : `${red(glyph.fail)} ${bold("Parity audit failed")}`;
+  const lines = [""];
+  lines.push(`  ${overall}${tally.length ? `  ${dim(glyph.dot)}  ${joinDot(tally)}` : ""}`);
+  lines.push(`  ${dim(report.repo)}  ${dim(glyph.dot)}  ${dim(prettyTimestamp(report.auditedAt))}`);
+  lines.push("");
   for (const rule of report.rules) {
-    lines.push(`- ${rule.id} [${rule.status}] ${rule.summary}`);
-    for (const detail of rule.details) lines.push(`    - ${detail}`);
+    const style = statusStyle(rule.status);
+    lines.push(`  ${style.color(style.glyph)}  ${style.color(rule.id.padEnd(idWidth))}  ${rule.summary}`);
+    for (const detail of rule.details) lines.push(`     ${dim(glyph.arrow)} ${dim(detail)}`);
   }
-  return `${lines.join("\n")}
-`;
+  lines.push("");
+  return lines.join("\n");
 }
 function formatMigrationReport(report) {
-  const lines = [`repo: ${report.repo}`, `dry_run: ${report.dryRun}`, `ok: ${report.ok}`, `selected_rules: ${report.selectedRules.join(", ")}`, "results:"];
+  const idWidth = report.results.reduce((width, result) => Math.max(width, result.id.length), 0);
+  const overall = report.ok ? `${green(glyph.pass)} ${bold(report.dryRun ? "Migration preview complete" : "Migration complete")}` : `${red(glyph.fail)} ${bold("Migration finished with blockers")}`;
+  const lines = [""];
+  lines.push(`  ${overall}${report.dryRun ? `  ${dim(glyph.dot)}  ${yellow("dry run")}` : ""}`);
+  lines.push(`  ${dim(report.repo)}`);
+  if (report.selectedRules.length) lines.push(`  ${dim(`rules: ${report.selectedRules.join(", ")}`)}`);
+  lines.push("");
   for (const result of report.results) {
-    lines.push(`- ${result.id} [${result.status}] ${result.summary}`);
-    for (const detail of result.details) lines.push(`    - ${detail}`);
-    for (const file of result.changedFiles) lines.push(`    - changed: ${file}`);
+    const style = statusStyle(result.status);
+    lines.push(`  ${style.color(style.glyph)}  ${style.color(result.id.padEnd(idWidth))}  ${result.summary}  ${dim(`[${style.label}]`)}`);
+    for (const detail of result.details) lines.push(`     ${dim(glyph.arrow)} ${dim(detail)}`);
+    for (const file of result.changedFiles) lines.push(`     ${green(glyph.add)} ${file}`);
   }
   if (report.changedFiles.length) {
-    lines.push("changed_files:");
-    for (const file of report.changedFiles) lines.push(`- ${file}`);
+    lines.push("");
+    lines.push(`  ${bold(`Changed files (${report.changedFiles.length})`)}`);
+    for (const file of report.changedFiles) lines.push(`     ${green(glyph.add)} ${file}`);
   }
-  return `${lines.join("\n")}
+  lines.push("");
+  return lines.join("\n");
+}
+
+// src/project/index.ts
+import { spawnSync as spawnSync5 } from "node:child_process";
+import { existsSync as existsSync8, mkdirSync as mkdirSync6, readFileSync as readFileSync4, renameSync as renameSync2, statSync, writeFileSync as writeFileSync5 } from "node:fs";
+import { homedir as homedir5 } from "node:os";
+import { basename as basename3, dirname as dirname6, join as join10, resolve as resolve2 } from "node:path";
+import YAML from "yaml";
+var PROJECT_REGISTRY_ENV = "PJ_PROJECT_REGISTRY";
+var PROJECT_REGISTRY_SCHEMA_VERSION = 1;
+var KNOWN_SKILL_ROOTS = [
+  "/home/delorenj/code/skillex/all-skills",
+  "/home/delorenj/code/CoachingAgentFramework/.agents/skills",
+  "/home/delorenj/code/pjangler/.agents/skills",
+  join10(homedir5(), ".codex", "skills")
+];
+function projectRegistryPath(env2 = process.env) {
+  return expandHome(env2[PROJECT_REGISTRY_ENV] || join10(homedir5(), ".config", "pjangler", "projects.yaml"));
+}
+function emptyProjectRegistry() {
+  return { schema_version: PROJECT_REGISTRY_SCHEMA_VERSION, projects: {} };
+}
+function loadProjectRegistry(path = projectRegistryPath()) {
+  if (!existsSync8(path)) return emptyProjectRegistry();
+  const raw = YAML.parse(readFileSync4(path, "utf8"));
+  if (raw == null) return emptyProjectRegistry();
+  if (!isRecord(raw)) throw new Error(`Project registry must be a mapping: ${path}`);
+  const registry = raw;
+  const normalized = {
+    schema_version: Number(registry.schema_version ?? PROJECT_REGISTRY_SCHEMA_VERSION),
+    projects: isRecord(registry.projects) ? registry.projects : {}
+  };
+  validateProjectRegistry(normalized);
+  return normalized;
+}
+function saveProjectRegistry(registry, path = projectRegistryPath()) {
+  validateProjectRegistry(registry);
+  mkdirSync6(dirname6(path), { recursive: true });
+  const temp = `${path}.${process.pid}.${Date.now()}.tmp`;
+  writeFileSync5(temp, YAML.stringify(registry, { lineWidth: 0 }), "utf8");
+  renameSync2(temp, path);
+}
+function validateProjectRegistry(registry) {
+  if (registry.schema_version !== PROJECT_REGISTRY_SCHEMA_VERSION) {
+    throw new Error(`Unsupported project registry schema_version: ${registry.schema_version}`);
+  }
+  if (!isRecord(registry.projects)) throw new Error("Project registry projects must be a mapping");
+  const slugs = /* @__PURE__ */ new Set();
+  const repoPaths = /* @__PURE__ */ new Map();
+  const identifiers = /* @__PURE__ */ new Map();
+  for (const [slug, project] of Object.entries(registry.projects)) {
+    validateProjectRecord(project, slug);
+    if (slugs.has(project.slug)) throw new Error(`Duplicate project slug: ${project.slug}`);
+    slugs.add(project.slug);
+    const repoKey = resolve2(project.repo_path);
+    const existingRepoSlug = repoPaths.get(repoKey);
+    if (existingRepoSlug && existingRepoSlug !== slug) {
+      throw new Error(`Duplicate project repo_path: ${project.repo_path} used by ${existingRepoSlug} and ${slug}`);
+    }
+    repoPaths.set(repoKey, slug);
+    const identifier = project.ticket_provider.identifier?.toUpperCase();
+    if (identifier) {
+      const existingIdentifierSlug = identifiers.get(identifier);
+      if (existingIdentifierSlug && existingIdentifierSlug !== slug) {
+        throw new Error(`Duplicate project identifier: ${identifier} used by ${existingIdentifierSlug} and ${slug}`);
+      }
+      identifiers.set(identifier, slug);
+    }
+  }
+}
+function slugifyProjectName(value) {
+  return value.trim().toLowerCase().replace(/[^a-z0-9]+/g, "-").replace(/^-+|-+$/g, "") || "project";
+}
+function deriveProjectIdentifier(value) {
+  const compact = value.replace(/[^A-Za-z0-9]/g, "").toUpperCase();
+  const identifier = compact.slice(0, 4) || "PROJ";
+  return identifier.length >= 2 ? identifier : `${identifier}XX`.slice(0, 4);
+}
+function normalizeAgentRole(value) {
+  return value?.trim() || "pm";
+}
+function jsonStable(value) {
+  return JSON.stringify(value);
+}
+function projectRecordEquivalent(a, b) {
+  if (!a) return false;
+  const { created_at: _aCreated, updated_at: _aUpdated, ...aComparable } = a;
+  const { created_at: _bCreated, updated_at: _bUpdated, ...bComparable } = b;
+  return jsonStable(aComparable) === jsonStable(bComparable);
+}
+function defaultProjectTargetDir(name, cwd = process.cwd()) {
+  const compactName = name.replace(/[^A-Za-z0-9._-]/g, "") || slugifyProjectName(name);
+  return resolve2(dirname6(resolve2(cwd)), compactName);
+}
+function resolveSourceSkillPath(sourceSkill) {
+  if (!sourceSkill) return void 0;
+  const expanded = expandHome(sourceSkill);
+  const direct = resolve2(expanded);
+  if (existsSync8(direct)) return direct;
+  const name = basename3(sourceSkill);
+  for (const root of KNOWN_SKILL_ROOTS) {
+    const candidate = join10(root, name);
+    if (existsSync8(candidate)) return candidate;
+  }
+  const civilWarLetterifier = "/home/delorenj/code/skillex/all-skills/civilwar-letterifier";
+  const hint = existsSync8(civilWarLetterifier) ? ` Did you mean ${civilWarLetterifier}?` : "";
+  throw new Error(`Source skill not found: ${sourceSkill}.${hint}`);
+}
+function planProjectInit(input) {
+  if (!input.name.trim()) throw new Error("Project name is required");
+  const registryPath2 = resolve2(projectRegistryPath({ ...process.env, [PROJECT_REGISTRY_ENV]: input.registryPath || process.env[PROJECT_REGISTRY_ENV] }));
+  const registry = loadProjectRegistry(registryPath2);
+  const now = (input.now ?? /* @__PURE__ */ new Date()).toISOString();
+  const slug = input.projectSlug ?? slugifyProjectName(input.name);
+  const targetDir = resolve2(input.targetDir ?? defaultProjectTargetDir(input.name, input.cwd));
+  const identifier = (input.projectIdentifier ?? deriveProjectIdentifier(input.name)).toUpperCase();
+  const existing = registry.projects[slug];
+  const sourceSkillPath = resolveSourceSkillPath(input.sourceSkill);
+  const overwrite = input.overwrite ?? input.force ?? false;
+  const agentRole = normalizeAgentRole(input.agentRole);
+  const agents = input.provisionAgent ? {
+    ...existing?.agents ?? {},
+    [agentRole]: {
+      role: agentRole,
+      provisioning_state: "planned"
+    }
+  } : existing?.agents ?? {};
+  const scaffold = input.scaffold ?? true;
+  const candidateProject = {
+    name: input.name,
+    slug,
+    repo_path: targetDir,
+    description: input.description ?? "",
+    status: "planned",
+    source_artifacts: sourceSkillPath ? [{ kind: "skill", path: sourceSkillPath, package_name: input.packageName ?? slug }] : [],
+    template: {
+      commonproject: {
+        enabled: true,
+        primary_language: input.primaryLanguage ?? "python"
+      }
+    },
+    ticket_provider: {
+      type: input.ticketProvider ?? "plane",
+      workspace: input.planeWorkspace ?? "33god",
+      identifier,
+      board_id: input.planeProjectId ?? "",
+      board_url: input.planeProjectId ? `https://plane.delo.sh/${input.planeWorkspace ?? "33god"}/projects/${input.planeProjectId}/issues/` : "",
+      state: input.live ? "planned" : "planned"
+    },
+    agents,
+    created_at: existing?.created_at ?? now,
+    updated_at: now
+  };
+  const project = {
+    ...candidateProject,
+    updated_at: projectRecordEquivalent(existing, candidateProject) ? existing.updated_at : now
+  };
+  validateNoDuplicateProject(registry, project, overwrite);
+  const pjanglerRoot = resolve2(input.pjanglerRoot ?? resolvePjanglerRoot2());
+  const manifest = projectManifestFromRegistryProject(project);
+  const apply = input.apply ?? false;
+  const live = input.live ?? false;
+  const actions = [
+    { kind: "registry.upsert", registryPath: registryPath2, slug, project }
+  ];
+  if (scaffold) {
+    actions.push(buildCommonProjectCopierAction({
+      pjanglerRoot,
+      targetDir,
+      projectName: project.name,
+      projectDescription: project.description,
+      projectSlug: project.slug,
+      ticketProvider: project.ticket_provider.type,
+      planeWorkspace: project.ticket_provider.workspace ?? "33god",
+      planeProjectId: project.ticket_provider.board_id ?? "",
+      projectIdentifier: identifier,
+      primaryLanguage: project.template.commonproject.primary_language,
+      overwrite
+    }));
+  }
+  actions.push(
+    { kind: "project.write-manifest", path: join10(targetDir, ".project.json"), manifest },
+    {
+      kind: "plane.create-or-link",
+      enabled: live,
+      live,
+      workspace: project.ticket_provider.workspace ?? "33god",
+      identifier,
+      state: live ? "planned" : "planned",
+      reason: live ? void 0 : "network/cloud actions require --live"
+    },
+    {
+      kind: "hermes.provision-agent",
+      enabled: input.provisionAgent ?? false,
+      local: !live,
+      targetDir,
+      targetRepo: slug,
+      role: agentRole,
+      context: {
+        skipRuntimeRepo: !live,
+        skipPlane: !live,
+        skipBloodbank: !live,
+        skipSystemd: !live || process.platform === "darwin"
+      }
+    }
+  );
+  return { ok: true, apply, dryRun: !apply, live, registryPath: registryPath2, project, manifest, actions };
+}
+function executeProjectInitPlan(plan) {
+  const logs = [];
+  const errors = [];
+  const changedFiles = [];
+  if (!plan.apply) return { ok: true, plan, logs, errors, changedFiles };
+  const registry = loadProjectRegistry(plan.registryPath);
+  let pendingRegistryAction;
+  for (const action of plan.actions) {
+    if (action.kind === "copier.copy.commonproject") {
+      mkdirSync6(dirname6(action.targetDir), { recursive: true });
+      const result = spawnSync5(action.command[0], action.command.slice(1), { encoding: "utf8", cwd: action.cwd });
+      if (result.stdout?.trim()) logs.push(result.stdout.trim());
+      if (result.stderr?.trim()) logs.push(result.stderr.trim());
+      if (result.error) {
+        const code = result.error.code;
+        errors.push(
+          code === "ENOENT" ? "copier not found on PATH. Install with: uv tool install copier or pip install copier" : `copier failed: ${result.error.message}`
+        );
+        break;
+      }
+      if (result.status !== 0) {
+        errors.push(`copier exited with status ${result.status ?? "unknown"}`);
+        if (existsSync8(action.targetDir)) changedFiles.push(action.targetDir);
+        break;
+      }
+      changedFiles.push(action.targetDir);
+    } else if (action.kind === "project.write-manifest") {
+      mkdirSync6(dirname6(action.path), { recursive: true });
+      const next = `${JSON.stringify(action.manifest, null, 2)}
 `;
+      const current = existsSync8(action.path) ? readFileSync4(action.path, "utf8") : void 0;
+      if (current !== next) {
+        writeFileSync5(action.path, next, "utf8");
+        changedFiles.push(action.path);
+      }
+    } else if (action.kind === "registry.upsert") {
+      pendingRegistryAction = action;
+    } else if (action.kind === "plane.create-or-link") {
+      logs.push(action.enabled ? "plane.create-or-link requires a live provider integration" : "plane.create-or-link skipped (requires --live)");
+    } else if (action.kind === "hermes.provision-agent") {
+      logs.push(action.enabled ? "hermes.provision-agent planned for the caller to execute" : "hermes.provision-agent skipped");
+    }
+  }
+  if (pendingRegistryAction && errors.length === 0) {
+    if (!projectRecordEquivalent(registry.projects[pendingRegistryAction.slug], pendingRegistryAction.project)) {
+      registry.projects[pendingRegistryAction.slug] = pendingRegistryAction.project;
+      saveProjectRegistry(registry, pendingRegistryAction.registryPath);
+      changedFiles.push(pendingRegistryAction.registryPath);
+    }
+  }
+  return { ok: errors.length === 0, plan, logs, errors, changedFiles };
+}
+function projectManifestFromRegistryProject(project) {
+  const agents = Object.fromEntries(
+    Object.entries(project.agents).map(([name, agent]) => [
+      `${project.slug}-${name}`,
+      {
+        role: agent.role,
+        role_dir: agent.role_dir,
+        provisioning_state: agent.provisioning_state
+      }
+    ])
+  );
+  return {
+    project_name: project.name,
+    project_description: project.description,
+    project_slug: project.slug,
+    repo_path: project.repo_path,
+    ticket_provider: {
+      type: project.ticket_provider.type,
+      workspace: project.ticket_provider.workspace ?? "",
+      identifier: project.ticket_provider.identifier ?? "",
+      board_id: project.ticket_provider.board_id ?? "",
+      board_url: project.ticket_provider.board_url ?? "",
+      state: project.ticket_provider.state
+    },
+    agents
+  };
+}
+function formatProjectInitPlan(plan) {
+  const lines = [""];
+  const title = `${bold(plan.project.name)} ${dim(`(${plan.project.slug})`)}`;
+  lines.push(`  ${cyan(bold(glyph.chevron))} ${title}${plan.dryRun ? `  ${dim(glyph.dot)}  ${yellow("dry run")}` : ""}`);
+  lines.push(`  ${dim("registry".padEnd(8))} ${dim(plan.registryPath)}`);
+  lines.push(`  ${dim("target".padEnd(8))} ${dim(plan.project.repo_path)}`);
+  lines.push("");
+  lines.push(`  ${bold("Actions")} ${dim(`(${plan.actions.length})`)}`);
+  if (!plan.actions.length) lines.push(`     ${dim("(nothing to do)")}`);
+  for (const action of plan.actions) {
+    lines.push(`     ${cyan(glyph.bullet)} ${action.kind}`);
+    if (action.kind === "copier.copy.commonproject") lines.push(`        ${dim(`target: ${action.targetDir}`)}`);
+    if (action.kind === "project.write-manifest") lines.push(`        ${dim(`path: ${action.path}`)}`);
+    if (action.kind === "plane.create-or-link" && action.reason) lines.push(`        ${dim(`note: ${action.reason}`)}`);
+  }
+  lines.push("");
+  return lines.join("\n");
+}
+function formatProjectList(registry) {
+  const projects = Object.values(registry.projects).sort((a, b) => a.slug.localeCompare(b.slug));
+  if (!projects.length) return `
+  ${dim("No projects registered.")}
+`;
+  const slugWidth = projects.reduce((width, project) => Math.max(width, project.slug.length), 0);
+  const idWidth = projects.reduce((width, project) => Math.max(width, String(project.ticket_provider.identifier ?? "").length), 0);
+  const statusWidth = projects.reduce((width, project) => Math.max(width, project.status.length), 0);
+  const lines = ["", `  ${bold("Projects")} ${dim(`(${projects.length})`)}`, ""];
+  for (const project of projects) {
+    const slug = bold(project.slug.padEnd(slugWidth));
+    const identifier = cyan(String(project.ticket_provider.identifier ?? "").padEnd(idWidth));
+    const status = projectStatusColor(project.status)(project.status.padEnd(statusWidth));
+    lines.push(`  ${slug}  ${identifier}  ${status}  ${dim(project.repo_path)}`);
+  }
+  lines.push("");
+  return lines.join("\n");
+}
+function getProject(registry, slug) {
+  const project = registry.projects[slug];
+  if (!project) throw new Error(`Project not found in registry: ${slug}`);
+  return project;
+}
+function doctorProjectRegistry(registryPath2 = projectRegistryPath(), slug) {
+  const issues = [];
+  const registry = loadProjectRegistry(registryPath2);
+  const projects = slug ? [[slug, getProject(registry, slug)]] : Object.entries(registry.projects);
+  for (const [projectSlug, project] of projects) {
+    if (!existsSync8(project.repo_path)) {
+      issues.push({ level: "warn", slug: projectSlug, message: `repo_path does not exist: ${project.repo_path}` });
+    } else if (!statSync(project.repo_path).isDirectory()) {
+      issues.push({ level: "error", slug: projectSlug, message: `repo_path is not a directory: ${project.repo_path}` });
+    } else {
+      const manifestPath = join10(project.repo_path, ".project.json");
+      if (!existsSync8(manifestPath)) issues.push({ level: "warn", slug: projectSlug, message: ".project.json is missing" });
+    }
+    for (const artifact of project.source_artifacts) {
+      if (artifact.path && !existsSync8(artifact.path)) {
+        issues.push({ level: "warn", slug: projectSlug, message: `source artifact missing: ${artifact.path}` });
+      }
+    }
+  }
+  return {
+    ok: !issues.some((issue) => issue.level === "error"),
+    registryPath: registryPath2,
+    checkedProjects: projects.map(([projectSlug]) => projectSlug),
+    issues
+  };
+}
+function buildCommonProjectCopierAction(input) {
+  const templateDir = join10(input.pjanglerRoot, "templates", "commonproject");
+  const data = {
+    project_name: input.projectName,
+    project_description: input.projectDescription ?? "",
+    project_slug: input.projectSlug,
+    ticket_provider: input.ticketProvider,
+    plane_workspace: input.planeWorkspace,
+    plane_project_id: input.planeProjectId ?? "",
+    project_identifier: input.projectIdentifier,
+    primary_language: input.primaryLanguage
+  };
+  const command = ["copier", "copy", "--trust", templateDir, input.targetDir, "--defaults"];
+  for (const [key, value] of Object.entries(data)) command.push("--data", `${key}=${value}`);
+  if (input.overwrite) command.push("--overwrite");
+  return {
+    kind: "copier.copy.commonproject",
+    cwd: input.pjanglerRoot,
+    command,
+    targetDir: input.targetDir,
+    data,
+    overwrite: input.overwrite
+  };
+}
+function resolvePjanglerRoot2() {
+  let dir = dirname6(new URL(import.meta.url).pathname);
+  while (dir !== dirname6(dir)) {
+    if (existsSync8(join10(dir, "package.json")) && existsSync8(join10(dir, "templates", "commonproject", "copier.yml"))) return dir;
+    dir = dirname6(dir);
+  }
+  return resolve2(process.cwd());
+}
+function validateNoDuplicateProject(registry, project, overwrite) {
+  const existingSameSlug = registry.projects[project.slug];
+  if (existingSameSlug && !overwrite && resolve2(existingSameSlug.repo_path) !== resolve2(project.repo_path)) {
+    throw new Error(`Project slug already exists in registry: ${project.slug}`);
+  }
+  for (const [slug, existing] of Object.entries(registry.projects)) {
+    if (slug === project.slug) continue;
+    if (resolve2(existing.repo_path) === resolve2(project.repo_path)) {
+      throw new Error(`Project repo_path already registered by ${slug}: ${project.repo_path}`);
+    }
+    if (existing.ticket_provider.identifier && existing.ticket_provider.identifier.toUpperCase() === project.ticket_provider.identifier?.toUpperCase()) {
+      throw new Error(`Project identifier already registered by ${slug}: ${project.ticket_provider.identifier}`);
+    }
+  }
+}
+function validateProjectRecord(project, key) {
+  if (!isRecord(project)) throw new Error(`Project ${key} must be a mapping`);
+  if (!project.name) throw new Error(`Project ${key} missing name`);
+  if (!project.slug) throw new Error(`Project ${key} missing slug`);
+  if (project.slug !== key) throw new Error(`Project key ${key} does not match slug ${project.slug}`);
+  if (!project.repo_path) throw new Error(`Project ${key} missing repo_path`);
+  if (!Array.isArray(project.source_artifacts)) throw new Error(`Project ${key} source_artifacts must be a list`);
+  if (!isRecord(project.ticket_provider)) throw new Error(`Project ${key} ticket_provider must be a mapping`);
+  if (!isRecord(project.agents)) throw new Error(`Project ${key} agents must be a mapping`);
+}
+function expandHome(path) {
+  if (path === "~") return homedir5();
+  if (path.startsWith("~/")) return join10(homedir5(), path.slice(2));
+  return path;
+}
+function isRecord(value) {
+  return typeof value === "object" && value !== null && !Array.isArray(value);
 }
 
 // src/utils/version.ts
-import { readFileSync as readFileSync4 } from "node:fs";
-import { dirname as dirname6, join as join9 } from "node:path";
+import { readFileSync as readFileSync5 } from "node:fs";
+import { dirname as dirname7, join as join11 } from "node:path";
 import { fileURLToPath as fileURLToPath4 } from "node:url";
 var PJANGLER_VERSION = (() => {
   try {
-    let dir = dirname6(fileURLToPath4(import.meta.url));
+    let dir = dirname7(fileURLToPath4(import.meta.url));
     for (let i = 0; i < 4; i++) {
       try {
-        const raw = readFileSync4(join9(dir, "package.json"), "utf8");
+        const raw = readFileSync5(join11(dir, "package.json"), "utf8");
         return JSON.parse(raw).version ?? "0.0.0";
       } catch {
-        const parent = dirname6(dir);
+        const parent = dirname7(dir);
         if (parent === dir) break;
         dir = parent;
       }
@@ -2607,6 +3404,191 @@ var PJANGLER_VERSION = (() => {
 })();
 
 // src/index.ts
+var xmark = `${red(glyph.fail)}`;
+function printMigrationReport(report, asJson) {
+  if (asJson) {
+    console.log(JSON.stringify(report, null, 2));
+  } else {
+    console.log(formatMigrationReport(report));
+  }
+}
+async function promptForRuleIds(rules) {
+  const options = rules.filter((rule) => rule.fixable).map((rule) => ({
+    value: rule.id,
+    label: `${rule.id} [${rule.status}] ${rule.title}`,
+    hint: rule.summary
+  }));
+  if (!options.length) {
+    return [];
+  }
+  const initialValues = rules.filter((rule) => rule.fixable && rule.status !== "pass" && rule.status !== "skip").map((rule) => rule.id);
+  const selected = await multiselect({
+    message: "Select parity rules to apply (space to toggle, enter to confirm):",
+    options,
+    initialValues
+  });
+  if (isCancel5(selected)) {
+    return [];
+  }
+  return selected;
+}
+function readJson(path) {
+  if (!existsSync9(path)) return void 0;
+  try {
+    const parsed = JSON.parse(readFileSync6(path, "utf8"));
+    return parsed && typeof parsed === "object" && !Array.isArray(parsed) ? parsed : void 0;
+  } catch {
+    return void 0;
+  }
+}
+function findGitRoot(cwd) {
+  const result = spawnSync6("git", ["rev-parse", "--show-toplevel"], { cwd, encoding: "utf8" });
+  if (result.status !== 0) return void 0;
+  return resolve3(result.stdout.trim());
+}
+function packageNameToProjectName(value) {
+  if (!value) return void 0;
+  const name = value.split("/").pop() ?? value;
+  return name.replace(/[-_]+/g, " ").replace(/\b\w/g, (letter) => letter.toUpperCase()).trim();
+}
+function deriveProjectDefaults(targetDir) {
+  const manifest = readJson(join12(targetDir, ".project.json"));
+  const pkg = readJson(join12(targetDir, "package.json"));
+  const name = String(manifest?.project_name ?? "").trim() || packageNameToProjectName(typeof pkg?.name === "string" ? pkg.name : void 0) || packageNameToProjectName(basename4(targetDir)) || "Project";
+  const ticketProvider = manifest?.ticket_provider && typeof manifest.ticket_provider === "object" ? manifest.ticket_provider : {};
+  return {
+    name,
+    description: String(manifest?.project_description ?? pkg?.description ?? ""),
+    slug: typeof manifest?.project_slug === "string" ? manifest.project_slug : void 0,
+    identifier: typeof ticketProvider.identifier === "string" ? ticketProvider.identifier : void 0
+  };
+}
+function isInteractiveProjectInit(options) {
+  return !options.json && !options.yes && options.tui !== false && Boolean(process.stdin.isTTY && process.stdout.isTTY);
+}
+async function promptTextValue(message, initialValue) {
+  const value = await text3({
+    message,
+    initialValue,
+    validate: (input) => input?.trim() ? void 0 : "Required"
+  });
+  if (isCancel5(value)) {
+    cancel2("project init cancelled");
+    process.exit(1);
+  }
+  return value.trim();
+}
+function projectInitActionLabel(kind) {
+  switch (kind) {
+    case "registry.upsert":
+      return "Register/update project registry entry";
+    case "copier.copy.commonproject":
+      return "Render CommonProject scaffold";
+    case "project.write-manifest":
+      return "Write repo-local .project.json projection";
+    case "plane.create-or-link":
+      return "Create/link ticket provider project";
+    case "hermes.provision-agent":
+      return "Provision Hermes agent";
+    default:
+      return kind;
+  }
+}
+function registryNeedsUpsert(plan) {
+  const registry = loadProjectRegistry(plan.registryPath);
+  const existing = registry.projects[plan.project.slug];
+  if (!existing) return true;
+  const { created_at: _existingCreated, updated_at: _existingUpdated, ...existingComparable } = existing;
+  const { created_at: _projectCreated, updated_at: _projectUpdated, ...projectComparable } = plan.project;
+  return JSON.stringify(existingComparable) !== JSON.stringify(projectComparable);
+}
+function actionNeedsRun(plan, kind, syncMode) {
+  if (kind === "registry.upsert") return registryNeedsUpsert(plan);
+  if (kind === "project.write-manifest") {
+    const action = plan.actions.find((item) => item.kind === "project.write-manifest");
+    if (!action || action.kind !== "project.write-manifest") return false;
+    const next = `${JSON.stringify(action.manifest, null, 2)}
+`;
+    return !existsSync9(action.path) || readFileSync6(action.path, "utf8") !== next;
+  }
+  if (kind === "copier.copy.commonproject") return true;
+  if (kind === "plane.create-or-link") return plan.actions.some((action) => action.kind === kind && action.enabled);
+  if (kind === "hermes.provision-agent") return plan.actions.some((action) => action.kind === kind && action.enabled);
+  return true;
+}
+async function selectProjectInitOperations(input) {
+  const planOperations = input.plan.actions.filter((action) => actionNeedsRun(input.plan, action.kind, input.syncMode)).map((action) => ({
+    value: action.kind,
+    label: projectInitActionLabel(action.kind),
+    hint: action.kind === "registry.upsert" ? input.plan.registryPath : action.kind
+  }));
+  const parityOperations = input.auditRules.filter((rule) => rule.fixable && rule.status !== "pass" && rule.status !== "skip").map((rule) => ({
+    value: `parity:${rule.id}`,
+    label: `${rule.title}`,
+    hint: `${rule.id}: ${rule.summary}`
+  }));
+  const operations = [...planOperations, ...parityOperations];
+  const all = operations.map((operation) => operation.value);
+  if (input.options.yes || input.options.apply && !isInteractiveProjectInit(input.options)) {
+    return {
+      selectedOperations: all,
+      selectedParityRules: parityOperations.map((operation) => operation.value.replace(/^parity:/, ""))
+    };
+  }
+  if (input.options.dryRun || !isInteractiveProjectInit(input.options)) {
+    return { selectedOperations: [], selectedParityRules: [] };
+  }
+  if (!operations.length) return { selectedOperations: [], selectedParityRules: [] };
+  const selected = await multiselect({
+    message: "Select project init operations to run:",
+    options: operations,
+    initialValues: all
+  });
+  if (isCancel5(selected)) {
+    cancel2("project init cancelled");
+    process.exit(1);
+  }
+  return {
+    selectedOperations: selected,
+    selectedParityRules: selected.filter((value) => value.startsWith("parity:")).map((value) => value.replace(/^parity:/, ""))
+  };
+}
+async function resolveProjectInitTarget(name, options) {
+  const interactive = isInteractiveProjectInit(options);
+  const cwd = process.cwd();
+  const cwdGitRoot = findGitRoot(cwd);
+  let targetDir = options.targetDir ? resolve3(options.targetDir) : void 0;
+  if (!targetDir && cwdGitRoot) {
+    targetDir = cwdGitRoot;
+  }
+  if (!targetDir && interactive) {
+    const defaultName = name ?? basename4(cwd);
+    const promptedName = name ?? await promptTextValue("Project name", packageNameToProjectName(defaultName));
+    const defaultDir = join12(cwd, promptedName.replace(/[^A-Za-z0-9._-]/g, "") || promptedName.toLowerCase().replace(/[^a-z0-9]+/g, "-"));
+    targetDir = await promptTextValue("Project directory", defaultDir);
+    name = promptedName;
+  }
+  if (!targetDir) {
+    if (!name) throw new Error("Project name or --target-dir is required when project init is not run inside a git repo");
+    targetDir = resolve3(process.cwd(), name.replace(/[^A-Za-z0-9._-]/g, "") || name.toLowerCase().replace(/[^a-z0-9]+/g, "-"));
+  }
+  const targetExists = existsSync9(targetDir);
+  if (targetExists && !statSync2(targetDir).isDirectory()) throw new Error(`Target path is not a directory: ${targetDir}`);
+  const targetGitRoot = targetExists ? findGitRoot(targetDir) : void 0;
+  const syncMode = Boolean(targetGitRoot && resolve3(targetGitRoot) === resolve3(targetDir));
+  const defaults = targetExists ? deriveProjectDefaults(targetDir) : { name: packageNameToProjectName(basename4(targetDir)) ?? "Project", description: "" };
+  if (!name && interactive && !syncMode) {
+    name = await promptTextValue("Project name", defaults.name);
+  }
+  return {
+    name: name ?? defaults.name,
+    targetDir,
+    description: options.description ?? defaults.description,
+    syncMode,
+    slug: options.slug ?? defaults.slug,
+    identifier: options.identifier ?? defaults.identifier
+  };
+}
 var program = new Command3();
 program.name("pjangler").description("Project subsystem bootstrapper CLI").version(PJANGLER_VERSION);
 program.command("init").argument("<subsystem>", "Subsystem to initialize").description("Initialize a project subsystem").option("--dry-run", "Preview changes without writing files").option("-f, --force", "Overwrite existing files").action(async (subsystem, options) => {
@@ -2618,61 +3600,219 @@ program.command("init").argument("<subsystem>", "Subsystem to initialize").descr
   try {
     const recipe = createRecipe(subsystem, context);
     if (!recipe) {
-      console.error(`\u274C Unknown subsystem: ${subsystem}`);
-      console.log(`Available subsystems: ${getRecipeNames().join(", ")}`);
+      console.error(`${xmark} Unknown subsystem: ${bold(subsystem)}`);
+      console.error(`  ${dim("Available:")} ${getRecipeNames().map((available) => cyan(available)).join(dim(", "))}`);
       process.exit(1);
     }
     await recipe.execute();
   } catch (error) {
-    console.error(`\u274C Error initializing ${subsystem}:`, error);
+    console.error(`${xmark} Error initializing ${bold(subsystem)}:`, error);
     process.exit(1);
   }
 });
 program.command("list").description("List available subsystems").action(() => {
-  console.log("Available subsystems:");
+  const width = Object.keys(RECIPE_REGISTRY).reduce((max, name) => Math.max(max, name.length), 0);
+  console.log("");
+  console.log(`  ${heading("Available subsystems")}`);
   console.log("");
   for (const [name, info] of Object.entries(RECIPE_REGISTRY)) {
-    console.log(`  ${name.padEnd(10)} - ${info.description}`);
+    console.log(`  ${cyan(name.padEnd(width))}  ${dim(info.description)}`);
+  }
+  console.log("");
+  console.log(`  ${dim("Examples")}`);
+  for (const example of ["pj init mise", "pj init docker", "pj init node"]) {
+    console.log(`     ${dim(glyph.pointer)} ${dim(example)}`);
   }
   console.log("");
-  console.log("Usage examples:");
-  console.log("  pjangler init mise");
-  console.log("  pjangler init docker");
-  console.log("  pjangler init node");
+});
+var projectCmd = program.command("project").description("Manage the pjangler project registry");
+projectCmd.command("init").argument("[name]", "Project display name").description("Plan or apply a registry-backed CommonProject initialization or legacy repo sync").option("--description <text>", "Project description").option("--target-dir <path>", "Target repo path").option("--source-skill <path>", "Source skill/template provenance path").option("--primary-language <language>", "Primary language for CommonProject rendering", "python").option("--provision-agent", "Plan local Hermes PM agent provisioning").option("--agent-role <role>", "Hermes agent role to plan when --provision-agent is set", "pm").option("--apply", "Write the registry and render the repo scaffold").option("--dry-run", "Preview changes without writing files (default)").option("--live", "Allow live/network/cloud provisioning actions").option("--slug <slug>", "Project registry slug override").option("--identifier <identifier>", "Ticket identifier override").option("--registry <path>", `Registry path override (default: ${projectRegistryPath()})`).option("-f, --force", "Allow replacing an existing registry entry and re-rendering files").option("-y, --yes", "Apply every proposed operation without prompting").option("--no-tui", "Disable interactive prompts").option("--json", "Output machine-parseable JSON").action(async (name, options) => {
+  try {
+    const target = await resolveProjectInitTarget(name, options);
+    const interactive = isInteractiveProjectInit(options);
+    const apply = Boolean(!options.dryRun && (options.yes || options.apply || interactive));
+    const plan = planProjectInit({
+      name: target.name,
+      description: target.description,
+      targetDir: target.targetDir,
+      sourceSkill: options.sourceSkill,
+      primaryLanguage: options.primaryLanguage,
+      provisionAgent: options.provisionAgent ?? false,
+      agentRole: options.agentRole,
+      apply,
+      live: options.live ?? false,
+      projectSlug: target.slug,
+      projectIdentifier: target.identifier,
+      registryPath: options.registry,
+      force: options.force ?? false,
+      overwrite: options.force ?? false,
+      cwd: process.cwd(),
+      scaffold: !target.syncMode
+    });
+    const audit = target.syncMode ? runAudit(target.targetDir) : void 0;
+    const selection = await selectProjectInitOperations({
+      plan,
+      auditRules: audit?.rules ?? [],
+      syncMode: target.syncMode,
+      options
+    });
+    const selectedPlanActionKinds = new Set(selection.selectedOperations.filter((value) => !value.startsWith("parity:")));
+    const selectedPlan = {
+      ...plan,
+      apply,
+      dryRun: !apply,
+      actions: apply ? plan.actions.filter((action) => selectedPlanActionKinds.has(action.kind)) : plan.actions
+    };
+    if (!apply) {
+      const payload = {
+        ...plan,
+        mode: target.syncMode ? "sync" : "create",
+        audit,
+        proposedOperations: [
+          ...plan.actions.filter((action) => actionNeedsRun(plan, action.kind, target.syncMode)).map((action) => action.kind),
+          ...(audit?.rules ?? []).filter((rule) => rule.fixable && rule.status !== "pass" && rule.status !== "skip").map((rule) => `parity:${rule.id}`)
+        ]
+      };
+      if (options.json) console.log(JSON.stringify(payload, null, 2));
+      else {
+        console.log(formatProjectInitPlan(plan));
+        if (payload.proposedOperations.length) {
+          console.log(`  ${bold("Proposed operations")} ${dim(`(${payload.proposedOperations.length})`)}`);
+          for (const operation of payload.proposedOperations) console.log(`     ${cyan(glyph.bullet)} ${operation}`);
+        } else {
+          console.log(`  ${green(glyph.pass)} ${dim("Project is already in parity.")}`);
+        }
+        console.log("");
+      }
+      return;
+    }
+    const initResult = selectedPlan.actions.length ? executeProjectInitPlan(selectedPlan) : { ok: true, plan: selectedPlan, logs: [], errors: [], changedFiles: [] };
+    const migrationReport = selection.selectedParityRules.length ? runMigrationForRules(selection.selectedParityRules, target.targetDir, false) : void 0;
+    const migrationErrors = migrationReport?.results.filter((result2) => result2.status === "blocked").map((result2) => `${result2.id}: ${result2.summary}`) ?? [];
+    const changedFiles = Array.from(/* @__PURE__ */ new Set([
+      ...initResult.changedFiles,
+      ...migrationReport?.changedFiles ?? []
+    ])).sort();
+    const result = {
+      ok: initResult.ok && (migrationReport?.ok ?? true),
+      mode: target.syncMode ? "sync" : "create",
+      plan: selectedPlan,
+      audit,
+      selectedOperations: selection.selectedOperations,
+      selectedParityRules: selection.selectedParityRules,
+      logs: initResult.logs,
+      errors: [...initResult.errors, ...migrationErrors],
+      changedFiles,
+      migrationReport
+    };
+    if (options.json) {
+      console.log(JSON.stringify(result, null, 2));
+    } else {
+      console.log(formatProjectInitPlan(selectedPlan));
+      for (const line of result.logs) console.log(line);
+      for (const line of result.errors) console.error(`  ${xmark} ${line}`);
+      if (migrationReport) console.log(formatMigrationReport(migrationReport));
+      if (result.ok && changedFiles.length) console.log(`  ${green(glyph.pass)} ${bold("Project synchronized")}  ${dim(glyph.dot)}  ${cyan(plan.project.slug)}
+`);
+      if (result.ok && changedFiles.length === 0) console.log(`  ${green(glyph.pass)} ${dim("Already in parity")}  ${dim(glyph.dot)}  ${cyan(plan.project.slug)}
+`);
+    }
+    process.exitCode = result.ok ? 0 : 1;
+  } catch (err) {
+    if (options.json) {
+      console.log(JSON.stringify({ ok: false, error: err instanceof Error ? err.message : String(err) }, null, 2));
+    } else {
+      console.error(`${xmark} project init failed:`, err instanceof Error ? err.message : err);
+    }
+    process.exit(1);
+  }
+});
+projectCmd.command("list").description("List projects in the pjangler registry").option("--registry <path>", `Registry path override (default: ${projectRegistryPath()})`).option("--json", "Output machine-parseable JSON").action((options) => {
+  try {
+    const registry = loadProjectRegistry(options.registry ?? projectRegistryPath());
+    if (options.json) console.log(JSON.stringify(registry, null, 2));
+    else console.log(formatProjectList(registry));
+  } catch (err) {
+    console.error(`${xmark} project list failed:`, err instanceof Error ? err.message : err);
+    process.exit(1);
+  }
+});
+projectCmd.command("show").argument("<slug>", "Project slug").description("Show one project from the pjangler registry").option("--registry <path>", `Registry path override (default: ${projectRegistryPath()})`).option("--json", "Output machine-parseable JSON").action((slug, options) => {
+  try {
+    const project = getProject(loadProjectRegistry(options.registry ?? projectRegistryPath()), slug);
+    if (options.json) {
+      console.log(JSON.stringify(project, null, 2));
+    } else {
+      console.log("");
+      console.log(`  ${heading(project.name)} ${dim(`(${project.slug})`)}`);
+      console.log(`  ${dim(project.repo_path)}`);
+      if (project.description) console.log(`  ${project.description}`);
+      console.log("");
+    }
+  } catch (err) {
+    console.error(`${xmark} project show failed:`, err instanceof Error ? err.message : err);
+    process.exit(1);
+  }
+});
+projectCmd.command("doctor").argument("[slug]", "Optional project slug").description("Validate the project registry and local projections").option("--registry <path>", `Registry path override (default: ${projectRegistryPath()})`).option("--json", "Output machine-parseable JSON").action((slug, options) => {
+  try {
+    const report = doctorProjectRegistry(options.registry ?? projectRegistryPath(), slug);
+    if (options.json) {
+      console.log(JSON.stringify(report, null, 2));
+    } else if (!report.issues.length) {
+      console.log("");
+      console.log(`  ${green(glyph.pass)} ${bold("Project registry OK")}  ${dim(glyph.dot)}  ${dim(report.registryPath)}`);
+      console.log("");
+    } else {
+      console.log("");
+      console.log(`  ${red(glyph.fail)} ${bold("Project registry issues")}  ${dim(glyph.dot)}  ${dim(report.registryPath)}`);
+      console.log("");
+      for (const issue of report.issues) {
+        const mark = issue.level === "error" ? red(glyph.fail) : yellow(glyph.warn);
+        console.log(`  ${mark}  ${bold(issue.slug ?? "registry")}  ${issue.message}`);
+      }
+      console.log("");
+    }
+    process.exit(report.ok ? 0 : 1);
+  } catch (err) {
+    console.error(`${xmark} project doctor failed:`, err instanceof Error ? err.message : err);
+    process.exit(1);
+  }
 });
 var recipeCmd = program.command("recipe").description("Manage pjangler recipes");
 recipeCmd.command("list").description("List all available recipes").action(() => {
-  console.log("\u{1F4E6} Available Recipes:");
+  console.log("");
+  console.log(`  ${heading("Recipes")}`);
   console.log("");
   for (const [name, info] of Object.entries(RECIPE_REGISTRY)) {
-    console.log(`  ${name}`);
-    console.log(`    ${info.description}`);
-    console.log(`    Commands: ${info.commands.join(", ")}`);
+    console.log(`  ${cyan(bold(name))}`);
+    console.log(`     ${dim(info.description)}`);
+    console.log(`     ${dim("commands")}  ${info.commands.map((command) => cyan(command)).join(dim(", "))}`);
     console.log("");
   }
-  console.log("Usage:");
-  console.log("  pjangler recipe run <name>");
-  console.log("  pjangler recipe describe <name>");
+  console.log(`  ${dim("Usage")}`);
+  console.log(`     ${dim(glyph.pointer)} ${dim("pj recipe run <name>")}`);
+  console.log(`     ${dim(glyph.pointer)} ${dim("pj recipe describe <name>")}`);
+  console.log("");
 });
 recipeCmd.command("describe").argument("<name>", "Recipe name").description("Show detailed information about a recipe").action((name) => {
   const info = getRecipeInfo(name);
   if (!info) {
-    console.error(`\u274C Recipe not found: ${name}`);
-    console.log(`Available recipes: ${getRecipeNames().join(", ")}`);
+    console.error(`${xmark} Recipe not found: ${bold(name)}`);
+    console.error(`  ${dim("Available:")} ${getRecipeNames().map((available) => cyan(available)).join(dim(", "))}`);
     process.exit(1);
   }
-  console.log(`\u{1F4E6} Recipe: ${info.name}`);
   console.log("");
-  console.log(`Description: ${info.description}`);
+  console.log(`  ${heading(info.name)}`);
+  console.log(`  ${dim(info.description)}`);
   console.log("");
-  console.log("Commands:");
-  for (const cmd of info.commands) {
-    console.log(`  - ${cmd}`);
-  }
+  console.log(`  ${bold("Commands")}`);
+  for (const command of info.commands) console.log(`     ${cyan(glyph.bullet)} ${command}`);
+  console.log("");
+  console.log(`  ${dim("Usage")}`);
+  console.log(`     ${dim(glyph.pointer)} ${dim(`pj recipe run ${name}`)}`);
+  console.log(`     ${dim(glyph.pointer)} ${dim(`pj init ${name}`)}`);
   console.log("");
-  console.log("Usage:");
-  console.log(`  pjangler recipe run ${name}`);
-  console.log(`  pjangler init ${name}`);
 });
 recipeCmd.command("run").argument("<name>", "Recipe name").description("Execute a specific recipe").option("--dry-run", "Preview changes without writing files").option("-f, --force", "Overwrite existing files").action(async (name, options) => {
   const context = {
@@ -2683,80 +3823,73 @@ recipeCmd.command("run").argument("<name>", "Recipe name").description("Execute
   try {
     const recipe = createRecipe(name, context);
     if (!recipe) {
-      console.error(`\u274C Recipe not found: ${name}`);
-      console.log(`Available recipes: ${getRecipeNames().join(", ")}`);
+      console.error(`${xmark} Recipe not found: ${bold(name)}`);
+      console.error(`  ${dim("Available:")} ${getRecipeNames().map((available) => cyan(available)).join(dim(", "))}`);
       process.exit(1);
     }
-    const dryRunPrefix = context.dryRun ? "[DRY RUN] " : "";
-    console.log(`${dryRunPrefix}\u{1F680} Running recipe: ${name}`);
-    console.log("");
     await recipe.execute();
   } catch (error) {
-    console.error(`\u274C Error running recipe ${name}:`, error);
+    console.error(`${xmark} Error running recipe ${bold(name)}:`, error);
     process.exit(1);
   }
 });
 var commandCmd = program.command("command").alias("cmd").description("Manage pjangler commands");
 commandCmd.command("list").description("List all available commands").option("-g, --group", "Group commands by category").action((options) => {
+  console.log("");
   if (options.group) {
-    console.log("\u2699\uFE0F  Available Commands (Grouped):");
-    console.log("");
-    const grouped = getCommandsByGroup();
-    for (const [group, commands] of Object.entries(grouped)) {
-      console.log(`  ${group.toUpperCase()}:`);
-      for (const cmd of commands) {
-        console.log(`    ${cmd.name.padEnd(30)} - ${cmd.description}`);
-      }
+    console.log(`  ${heading("Commands by category")}`);
+    for (const [group, commands] of Object.entries(getCommandsByGroup())) {
+      const width = commands.reduce((max, command) => Math.max(max, command.name.length), 0);
       console.log("");
+      console.log(`  ${bold(group.toUpperCase())}`);
+      for (const command of commands) {
+        console.log(`     ${cyan(command.name.padEnd(width))}  ${dim(command.description)}`);
+      }
     }
+    console.log("");
   } else {
-    console.log("\u2699\uFE0F  Available Commands:");
+    const width = Object.keys(COMMAND_REGISTRY).reduce((max, name) => Math.max(max, name.length), 0);
+    console.log(`  ${heading("Commands")}`);
     console.log("");
     for (const [name, info] of Object.entries(COMMAND_REGISTRY)) {
-      console.log(`  ${name.padEnd(30)} - ${info.description}`);
+      console.log(`  ${cyan(name.padEnd(width))}  ${dim(info.description)}`);
     }
     console.log("");
   }
-  console.log("Usage:");
-  console.log("  pj command list --group    # Group by category");
-  console.log("  pj command describe <name> # Show command details");
+  console.log(`  ${dim("Usage")}`);
+  console.log(`     ${dim(glyph.pointer)} ${dim("pj command list --group")}     ${dim("# group by category")}`);
+  console.log(`     ${dim(glyph.pointer)} ${dim("pj command describe <name>")}  ${dim("# command details")}`);
+  console.log("");
 });
 commandCmd.command("describe").argument("<name>", "Command name").description("Show detailed information about a command").action((name) => {
   const info = getCommandInfo(name);
   if (!info) {
-    console.error(`\u274C Command not found: ${name}`);
-    console.log(`Available commands: ${getCommandNames().join(", ")}`);
+    console.error(`${xmark} Command not found: ${bold(name)}`);
+    console.error(`  ${dim("Available:")} ${getCommandNames().map((available) => cyan(available)).join(dim(", "))}`);
     process.exit(1);
   }
-  console.log(`\u2699\uFE0F  Command: ${info.name}`);
+  const usedIn = Object.entries(RECIPE_REGISTRY).filter(([, recipeInfo]) => recipeInfo.commands.includes(name)).map(([recipeName]) => recipeName);
   console.log("");
-  console.log(`Description: ${info.description}`);
-  console.log(`Group: ${info.group}`);
+  console.log(`  ${heading(info.name)}`);
+  console.log(`  ${dim(info.description)}`);
   console.log("");
-  console.log("This command is used in recipes:");
-  for (const [recipeName, recipeInfo] of Object.entries(RECIPE_REGISTRY)) {
-    if (recipeInfo.commands.includes(name)) {
-      console.log(`  - ${recipeName}`);
-    }
-  }
+  console.log(`  ${dim("group".padEnd(7))} ${cyan(info.group)}`);
+  console.log(`  ${dim("recipes".padEnd(7))} ${usedIn.length ? usedIn.map((recipeName) => cyan(recipeName)).join(dim(", ")) : dim("(none)")}`);
+  console.log("");
+  console.log(`  ${dim("Part of recipe execution (not run directly).")}`);
   console.log("");
-  console.log("Usage:");
-  console.log(`  Part of recipe execution (not run directly)`);
 });
 commandCmd.command("create").argument("<name>", "Command name").argument("<prompt>", "Description of what the command should do").description("Create a new command from template (placeholder for STORY-005)").option("-t, --template <type>", "Template type (toml, json, yaml, dockerfile)").option("-m, --model <model>", "LLM model to use (OpenRouter)").action((name, prompt, options) => {
-  console.log("\u{1F6A7} Command generation coming in STORY-005!");
   console.log("");
-  console.log("Planned features:");
-  console.log(`  - Generate ${name} from prompt: "${prompt}"`);
-  if (options.template) {
-    console.log(`  - Template type: ${options.template}`);
-  }
-  if (options.model) {
-    console.log(`  - LLM model: ${options.model}`);
-  }
+  console.log(`  ${yellow(glyph.warn)} ${bold("Command generation coming in STORY-005")}`);
+  console.log("");
+  console.log(`  ${dim("Planned")}`);
+  console.log(`     ${cyan(glyph.bullet)} Generate ${bold(name)} from prompt: ${dim(`"${prompt}"`)}`);
+  if (options.template) console.log(`     ${cyan(glyph.bullet)} Template type: ${cyan(options.template)}`);
+  if (options.model) console.log(`     ${cyan(glyph.bullet)} LLM model: ${cyan(options.model)}`);
+  console.log("");
+  console.log(`  ${dim("For now, manually create commands in src/commands/")}`);
   console.log("");
-  console.log("This feature will be implemented in the Template Generation System story.");
-  console.log("For now, manually create commands in src/commands/");
 });
 program.command("audit").argument("[repo]", "Path to repo to audit (default: cwd)").description("Deterministic parity audit against 33god project standard").option("--json", "Output machine-parseable JSON").action((repo, options) => {
   try {
@@ -2768,31 +3901,57 @@ program.command("audit").argument("[repo]", "Path to repo to audit (default: cwd
     }
     process.exit(report.ok ? 0 : 1);
   } catch (err) {
-    console.error("\u274C audit failed:", err);
+    console.error(`${xmark} audit failed:`, err);
     process.exit(1);
   }
 });
-program.command("migrate").argument("[rule-id]", "Rule ID to migrate (omit with --all to apply all)").argument("[repo]", "Path to repo (default: cwd)").description("Idempotent migration recipe for a parity rule (or --all)").option("--all", "Apply every migration recipe in order").option("--dry-run", "Preview changes without writing files").option("--json", "Output machine-parseable JSON").action((ruleId, repo, options) => {
+program.command("migrate").argument("[rule-id]", "Rule ID to migrate (omit to open interactive rule selector)").argument("[repo]", "Path to repo (default: cwd)").description("Idempotent migration recipe for a parity rule (or open the rule selector)").option("--all", "Apply every migration recipe in order").option("--dry-run", "Preview changes without writing files").option("--json", "Output machine-parseable JSON").action(async (ruleId, repo, options) => {
   try {
     const all = options.all ?? false;
-    if (!all && !ruleId) {
-      console.error("\u274C Provide a rule-id or use --all");
-      process.exit(1);
+    const dryRun = options.dryRun ?? false;
+    if (all) {
+      let actualRepo = repo;
+      if (ruleId && !actualRepo) {
+        actualRepo = ruleId;
+      }
+      const report2 = runMigration(void 0, actualRepo, dryRun, true);
+      printMigrationReport(report2, options.json);
+      process.exit(report2.ok ? 0 : 1);
+    }
+    if (ruleId && repo) {
+      if (!getParityRuleIds().includes(ruleId)) {
+        console.error(`${xmark} Unknown parity rule: ${bold(ruleId)}`);
+        process.exit(1);
+      }
+      const report2 = runMigration(ruleId, repo, dryRun, false);
+      printMigrationReport(report2, options.json);
+      process.exit(report2.ok ? 0 : 1);
     }
-    let actualRuleId = all ? void 0 : ruleId;
-    let actualRepo = repo;
-    if (all && ruleId && !actualRepo) {
-      actualRepo = ruleId;
+    if (ruleId && getParityRuleIds().includes(ruleId)) {
+      const report2 = runMigration(ruleId, void 0, dryRun, false);
+      printMigrationReport(report2, options.json);
+      process.exit(report2.ok ? 0 : 1);
     }
-    const report = runMigration(actualRuleId, actualRepo, options.dryRun ?? false, all);
     if (options.json) {
-      console.log(JSON.stringify(report, null, 2));
-    } else {
-      console.log(formatMigrationReport(report));
+      console.error(`${xmark} JSON output requires a rule-id or --all`);
+      process.exit(1);
+    }
+    if (!process.stdin.isTTY) {
+      console.error(`${xmark} Provide a rule-id, use --all, or run in an interactive terminal`);
+      process.exit(1);
     }
+    const targetRepo = ruleId ?? repo;
+    const audit = runAudit(targetRepo);
+    const ruleIds = await promptForRuleIds(audit.rules);
+    if (!ruleIds.length) {
+      console.log(`  ${cyan(glyph.info)} ${dim("No rules selected; nothing to migrate.")}`);
+      process.exit(0);
+    }
+    const report = runMigrationForRules(ruleIds, targetRepo, dryRun);
+    printMigrationReport(report, false);
     process.exit(report.ok ? 0 : 1);
   } catch (err) {
-    console.error("\u274C migrate failed:", err);
+    console.error(`${xmark} migrate failed:`, err);
     process.exit(1);
   }
 });
@@ -2827,12 +3986,12 @@ program.command("hermes-agent").alias("hermes").description("Provision a Hermes
   try {
     const recipe = createRecipe("hermes-agent", context);
     if (!recipe) {
-      console.error("\u274C hermes-agent recipe not registered");
+      console.error(`${xmark} hermes-agent recipe not registered`);
       process.exit(1);
     }
     await recipe.execute();
   } catch (err) {
-    console.error("\u274C hermes-agent failed:", err);
+    console.error(`${xmark} hermes-agent failed:`, err);
     process.exit(1);
   }
 });
@@ -2850,14 +4009,15 @@ configCmd.command("bootstrap").description("Create ~/.config/hermes-agent-templa
   }
 });
 program.command("describe").description("Describe the current project (for AI context)").action(() => {
-  console.log("\u{1F50D} Project Description (placeholder for future enhancement)");
   console.log("");
-  console.log("This command will analyze the project and provide:");
-  console.log("  - Detected project type");
-  console.log("  - Installed subsystems");
-  console.log("  - Configuration files present");
-  console.log("  - Suggested next steps");
+  console.log(`  ${heading("Project description")} ${dim("(placeholder)")}`);
+  console.log("");
+  console.log(`  ${dim("Will analyze the project and report:")}`);
+  for (const item of ["Detected project type", "Installed subsystems", "Configuration files present", "Suggested next steps"]) {
+    console.log(`     ${cyan(glyph.bullet)} ${item}`);
+  }
+  console.log("");
+  console.log(`  ${dim("Coming soon.")}`);
   console.log("");
-  console.log("Coming soon!");
 });
 program.parse();