@deimoscloud/coreai 0.1.18 → 0.1.20

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/index.ts","../src/config/loader.ts","../src/agents/types.ts","../src/agents/loader.ts","../src/agents/resolver.ts","../src/agents/compiler.ts","../src/adapters/types.ts","../src/adapters/factory.ts","../src/adapters/mcp/client.ts","../src/adapters/native/github.ts","../src/cache/types.ts","../src/cache/provider.ts","../src/cache/manager.ts","../src/context/loader.ts","../src/commands/context.ts","../src/commands/registry.ts","../src/commands/loader.ts","../src/commands/runner.ts","../src/skills/generator.ts","../src/knowledge-library/manager.ts"],"sourcesContent":["/**\n * CoreAI - A configurable, team-ready AI agent orchestration platform.\n *\n * This is the main library export for programmatic usage.\n */\n\nimport { readFileSync } from 'fs';\nimport { dirname, join } from 'path';\nimport { fileURLToPath } from 'url';\n\n// Find package.json by walking up from the current module\nfunction findPackageJson(): string {\n  let dir = dirname(fileURLToPath(import.meta.url));\n  while (dir !== dirname(dir)) {\n    const pkgPath = join(dir, 'package.json');\n    try {\n      const content = readFileSync(pkgPath, 'utf-8');\n      const pkg = JSON.parse(content);\n      if (pkg.name === '@deimoscloud/coreai') {\n        return content;\n      }\n    } catch {\n      // Continue searching\n    }\n    dir = dirname(dir);\n  }\n  return '{\"version\": \"unknown\"}';\n}\n\nconst packageJson = JSON.parse(findPackageJson());\nexport const VERSION: string = packageJson.version;\n\n// Configuration\nexport {\n  loadConfig,\n  loadConfigFromFile,\n  findConfigFile,\n  configExists,\n  getConfigPath,\n  ConfigError,\n} from './config/index.js';\n\nexport type {\n  CoreAIConfig,\n  ResolvedCoreAIConfig,\n  ProjectConfig,\n  TeamConfig,\n  IntegrationsConfig,\n  QualityGatesConfig,\n  TechStackConfig,\n  CacheConfig,\n  ConfigErrorCode,\n} from './config/index.js';\n\n// Agents\nexport {\n  loadAgentFromFile,\n  loadAgentsFromDirectory,\n  parseAgentYaml,\n  validateAgentDefinition,\n  getRoleFromFilename,\n  AgentError,\n  resolveString,\n  resolveObject,\n  resolveAgentDefinition,\n  hasVariables,\n  extractVariables,\n  ResolutionError,\n  generateAgentMarkdown,\n  compileAgent,\n  compileAgents,\n  loadAllAgents,\n  filterAgentsByTeam,\n  getCoreAgentsDir,\n} from './agents/index.js';\n\nexport type {\n  AgentDefinition,\n  ResolvedAgentDefinition,\n  AgentType,\n  WorkflowType,\n  AgentMetadata,\n  AgentSource,\n  AgentErrorCode,\n  ResolutionContext,\n  ResolutionOptions,\n  CompileOptions,\n  CompileResult,\n} from './agents/index.js';\n\n// Adapters\nexport {\n  AdapterFactory,\n  createAdapterFactory,\n  createAdapterInfo,\n  AdapterError,\n} from './adapters/index.js';\n\nexport type {\n  AdapterType,\n  AdapterImplementation,\n  AdapterInfo,\n  AdapterFactoryOptions,\n  AdapterErrorCode,\n  BaseAdapter,\n  IssueTrackerAdapter,\n  GitProviderAdapter,\n  DocumentationProviderAdapter,\n  StateProviderAdapter,\n  Adapter,\n  Issue,\n  IssueQuery,\n  IssueStatus,\n  CreateIssueData,\n  UpdateIssueData,\n  PullRequest,\n  PullRequestQuery,\n  PullRequestStatus,\n  CreatePullRequestData,\n  Review,\n  CreateReviewData,\n  ReviewDecision,\n  ReviewComment,\n  DocumentationPage,\n  DocumentationQuery,\n  StateEntry,\n  StateOptions,\n} from './adapters/index.js';\n\n// Cache\nexport {\n  CacheError,\n  CACHE_PATHS,\n  DEFAULT_CACHE_CONFIG,\n  FileCacheProvider,\n  createFileCacheProvider,\n  FileCacheManager,\n  createCacheManager,\n} from './cache/index.js';\n\nexport type {\n  CacheSource,\n  CacheStatus,\n  CacheMetadata,\n  CacheEntry,\n  CacheOptions,\n  CacheListOptions,\n  CacheStats,\n  SyncResult,\n  CacheErrorCode,\n  CacheProvider,\n  RemoteFetcher,\n  FetchOptions,\n  CacheManager,\n  SyncOptions,\n  FileCacheProviderOptions,\n  CacheManagerOptions,\n} from './cache/index.js';\n\n// Context\nexport { ContextLoader, createContextLoader } from './context/index.js';\n\nexport type {\n  ContextSource,\n  ContextLoadResult,\n  ContextLoaderOptions,\n  LoadOptions,\n} from './context/index.js';\n\n// Commands\nexport {\n  CommandRegistry,\n  createCommandRegistry,\n  getGlobalRegistry,\n  resetGlobalRegistry,\n  createCommandContext,\n  cleanupContext,\n  withContext,\n  loadCommandFromFile,\n  loadCommandsFromDirectory,\n  loadCoreAICommands,\n  loadAllCommands,\n  runCommand,\n  executeWithDegradation,\n  createDegradingHandler,\n  StepTracker,\n} from './commands/index.js';\n\nexport type {\n  CommandCategory,\n  IntegrationDependency,\n  CommandMetadata,\n  CommandContext,\n  BaseCommandOptions,\n  CommandResult,\n  CommandHandler,\n  CommandDefinition,\n  CommandOptionDefinition,\n  CommandArgumentDefinition,\n  MarkdownCommand,\n  RegistryEntry,\n  CommandLoaderOptions,\n  CommandLoadResult,\n  CreateContextOptions,\n  RunCommandOptions,\n} from './commands/index.js';\n\n// Skills\nexport {\n  getCoreSkillsDir,\n  discoverSkills,\n  parseSkillFile,\n  extractVariables as extractSkillVariables,\n  substituteVariables,\n  checkDependencies,\n  generateSkills,\n  formatGenerateResult,\n} from './skills/index.js';\n\nexport type {\n  SkillTemplate,\n  SkillVariables,\n  SkillCategory,\n  SkillDependency,\n  GenerateSkillsOptions,\n  GenerateSkillsResult,\n  GeneratedSkill,\n  SkillError,\n} from './skills/index.js';\n\n// KnowledgeLibrary\nexport {\n  DEFAULT_KNOWLEDGE_LIBRARY_PATH,\n  STANDARD_FILES,\n  AGENT_DIRECTORIES,\n  CONTROL_FILES,\n  getAgentDirectories,\n  initKnowledgeLibrary,\n  initAgentKnowledgeLibrary,\n  agentKnowledgeLibraryExists,\n  getAgentKnowledgeState,\n  generateMessageFilename,\n  readInboxMessages,\n  writeInboxMessage,\n  markMessageProcessed,\n  getKnowledgeLibraryState,\n  updateAgentContext,\n  formatKnowledgeLibraryState,\n  formatAgentKnowledgeState,\n} from './knowledge-library/index.js';\n\nexport type {\n  MessageType,\n  MessagePriority,\n  MessageMetadata,\n  Message,\n  AgentContext,\n  Objective,\n  Decision,\n  Dependency,\n  AgentControl,\n  AgentDirectories,\n  AgentKnowledgeState,\n  InitKnowledgeLibraryOptions,\n  InitKnowledgeLibraryResult,\n  ReadMessagesOptions,\n  WriteMessageOptions,\n  KnowledgeLibraryState,\n} from './knowledge-library/index.js';\n","/**\n * Configuration Loader\n *\n * Handles config file discovery, parsing, validation, and defaults.\n */\n\nimport { existsSync, readFileSync } from 'fs';\nimport { dirname, join, resolve } from 'path';\nimport { parse as parseYaml } from 'yaml';\nimport Ajv, { type ErrorObject } from 'ajv';\nimport addFormats from 'ajv-formats';\nimport type { CoreAIConfig, ResolvedCoreAIConfig } from './types.js';\n\n// Import schema as JSON\nimport { createRequire } from 'module';\nconst require = createRequire(import.meta.url);\nconst configSchema = require('../../schemas/coreai.config.schema.json') as object;\n\nconst CONFIG_FILE_NAME = 'coreai.config.yaml';\nconst CONFIG_FILE_NAMES = [CONFIG_FILE_NAME, 'coreai.config.yml'];\n\nexport class ConfigError extends Error {\n  constructor(\n    message: string,\n    public readonly code: ConfigErrorCode,\n    public readonly details?: unknown\n  ) {\n    super(message);\n    this.name = 'ConfigError';\n  }\n}\n\nexport type ConfigErrorCode = 'NOT_FOUND' | 'PARSE_ERROR' | 'VALIDATION_ERROR' | 'READ_ERROR';\n\n/**\n * Default team agents\n */\nconst DEFAULT_AGENTS = [\n  'backend-engineer',\n  'frontend-engineer',\n  'devops-engineer',\n  'engineering-manager',\n];\n\n/**\n * Find the config file by walking up the directory tree\n */\nexport function findConfigFile(startDir: string = process.cwd()): string | null {\n  let currentDir = resolve(startDir);\n  const root = dirname(currentDir);\n\n  while (currentDir !== root) {\n    for (const fileName of CONFIG_FILE_NAMES) {\n      const configPath = join(currentDir, fileName);\n      if (existsSync(configPath)) {\n        return configPath;\n      }\n    }\n\n    const parentDir = dirname(currentDir);\n    if (parentDir === currentDir) {\n      break;\n    }\n    currentDir = parentDir;\n  }\n\n  // Check root directory\n  for (const fileName of CONFIG_FILE_NAMES) {\n    const configPath = join(currentDir, fileName);\n    if (existsSync(configPath)) {\n      return configPath;\n    }\n  }\n\n  return null;\n}\n\n/**\n * Parse YAML content into an object\n */\nexport function parseConfig(content: string, filePath?: string): unknown {\n  try {\n    return parseYaml(content);\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown parse error';\n    throw new ConfigError(\n      `Failed to parse YAML${filePath ? ` in ${filePath}` : ''}: ${message}`,\n      'PARSE_ERROR',\n      error\n    );\n  }\n}\n\n/**\n * Validate config against JSON schema\n */\nexport function validateConfig(config: unknown): CoreAIConfig {\n  const ajv = new Ajv.default({ allErrors: true, strict: false });\n  addFormats.default(ajv);\n\n  const validate = ajv.compile<CoreAIConfig>(configSchema);\n  const valid = validate(config);\n\n  if (!valid) {\n    const errors: ErrorObject[] = validate.errors ?? [];\n    const errorMessages = errors.map((err: ErrorObject) => {\n      const path = err.instancePath || 'root';\n      return `${path}: ${err.message ?? 'unknown error'}`;\n    });\n\n    throw new ConfigError(\n      `Configuration validation failed:\\n  - ${errorMessages.join('\\n  - ')}`,\n      'VALIDATION_ERROR',\n      errors\n    );\n  }\n\n  return config as CoreAIConfig;\n}\n\n/**\n * Apply default values to config\n */\nexport function applyDefaults(config: CoreAIConfig): ResolvedCoreAIConfig {\n  return {\n    ...config,\n    project: {\n      name: config.project?.name ?? 'unnamed',\n      type: config.project?.type ?? 'software',\n      root: config.project?.root ?? process.cwd(),\n    },\n    team: {\n      agents: config.team?.agents ?? DEFAULT_AGENTS,\n    },\n  };\n}\n\n/**\n * Load and validate configuration from a file path\n */\nexport function loadConfigFromFile(filePath: string): ResolvedCoreAIConfig {\n  let content: string;\n\n  try {\n    content = readFileSync(filePath, 'utf-8');\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown read error';\n    throw new ConfigError(\n      `Failed to read config file ${filePath}: ${message}`,\n      'READ_ERROR',\n      error\n    );\n  }\n\n  const parsed = parseConfig(content, filePath);\n  const validated = validateConfig(parsed);\n  return applyDefaults(validated);\n}\n\n/**\n * Load configuration by searching for config file\n */\nexport function loadConfig(startDir?: string): ResolvedCoreAIConfig {\n  const configPath = findConfigFile(startDir);\n\n  if (!configPath) {\n    throw new ConfigError(\n      `Configuration file not found. Create a ${CONFIG_FILE_NAME} file or run 'coreai init'.`,\n      'NOT_FOUND'\n    );\n  }\n\n  return loadConfigFromFile(configPath);\n}\n\n/**\n * Check if a config file exists in the given directory or parent directories\n */\nexport function configExists(startDir?: string): boolean {\n  return findConfigFile(startDir) !== null;\n}\n\n/**\n * Get the path to the config file, or null if not found\n */\nexport function getConfigPath(startDir?: string): string | null {\n  return findConfigFile(startDir);\n}\n","/**\n * CoreAI Agent Types\n *\n * TypeScript types corresponding to the JSON schema at schemas/agent.schema.json\n */\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport type AgentType = 'ic-engineer' | 'manager' | 'specialist' | 'coordinator';\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport type WorkflowType =\n  | 'ticket-implementation'\n  | 'bug-investigation'\n  | 'code-review'\n  | 'planning-estimation'\n  | 'product-planning';\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentExpertise {\n  primary?: string[];\n  tech_stack?: string;\n  [key: string]: unknown;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentPrinciples {\n  code_quality?: string[];\n  testing?: string[];\n  security?: string[];\n  performance?: string[];\n  [key: string]: string[] | undefined;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentBehaviors {\n  workflow?: WorkflowType;\n  quality_gates?: string;\n  [key: string]: unknown;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentContextSources {\n  shared?: string[];\n  personal?: string[];\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentKnowledgeLibraryControl {\n  objectives?: string;\n  decisions?: string;\n  dependencies?: string;\n  index?: string;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentKnowledgeLibraryShared {\n  context?: string;\n  architecture?: string;\n  prd?: string;\n  remote?: string[];\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentKnowledgeLibraryPersonal {\n  context?: string;\n  history?: string;\n  inbox?: string;\n  outbox?: string;\n  tech?: string;\n  control?: AgentKnowledgeLibraryControl;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentKnowledgeLibrary {\n  shared?: AgentKnowledgeLibraryShared;\n  personal?: AgentKnowledgeLibraryPersonal;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentCommunication {\n  inbox?: string;\n  outbox?: string;\n  message_format?: string;\n  outbox_format?: string;\n  processed_dir?: string;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentStartupProtocol {\n  first_session?: string[];\n  subsequent?: string[];\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentProtocols {\n  startup?: AgentStartupProtocol;\n  completion?: string[];\n}\n\n/**\n * Default Claude Code tools available to agents\n */\nexport const DEFAULT_AGENT_TOOLS = ['Read', 'Write', 'Edit', 'Bash', 'Glob', 'Grep'] as const;\n\n/**\n * Agent definition.\n * For MD agents: role, type, display_name, description, tools are used.\n * For deprecated YAML agents: all fields may be populated.\n */\nexport interface AgentDefinition {\n  role: string;\n  type: AgentType;\n  display_name: string;\n  description: string;\n  /** @deprecated YAML-only. In MD agents, responsibilities are in the template body. */\n  responsibilities?: string[];\n  /** @deprecated YAML-only. In MD agents, expertise is in the template body. */\n  expertise?: AgentExpertise;\n  /** @deprecated YAML-only. In MD agents, skills are in the template body. */\n  skills?: string[];\n  /** @deprecated YAML-only. In MD agents, principles are in the template body. */\n  principles?: AgentPrinciples;\n  /** @deprecated YAML-only. In MD agents, behaviors are in the template body. */\n  behaviors?: AgentBehaviors;\n  /** @deprecated YAML-only. Use knowledge_library or MD template body instead. */\n  context_sources?: AgentContextSources;\n  /** @deprecated YAML-only. In MD agents, knowledge library structure is in the template body. */\n  knowledge_library?: AgentKnowledgeLibrary;\n  /** @deprecated YAML-only. In MD agents, communication details are in the template body. */\n  communication?: AgentCommunication;\n  /** @deprecated YAML-only. In MD agents, protocols are in the template body. */\n  protocols?: AgentProtocols;\n  /**\n   * Claude Code tools available to this agent.\n   * If not specified, defaults to: Read, Write, Edit, Bash, Glob, Grep\n   */\n  tools?: string[];\n}\n\n/**\n * @deprecated Used only for YAML backward compatibility.\n */\nexport interface ResolvedAgentDefinition extends AgentDefinition {\n  expertise?: AgentExpertise & {\n    tech_stack?: Record<string, unknown>;\n  };\n  behaviors?: AgentBehaviors & {\n    quality_gates?: Record<string, unknown>;\n  };\n}\n\n/**\n * Agent source location\n */\nexport type AgentSource = 'core' | 'custom' | 'override';\n\n/**\n * Agent metadata including source information\n */\nexport interface AgentMetadata {\n  definition: AgentDefinition;\n  source: AgentSource;\n  filePath: string;\n}\n","/**\n * Agent Loader\n *\n * Handles loading agent definitions from Markdown templates (primary)\n * and YAML files (deprecated, backward compatible).\n */\n\nimport { existsSync, readdirSync, readFileSync } from 'fs';\nimport { basename, extname, join } from 'path';\nimport { parse as parseYaml } from 'yaml';\nimport Ajv, { type ErrorObject } from 'ajv';\nimport type { AgentDefinition, AgentMetadata, AgentSource } from './types.js';\n\n// Import schema as JSON (for deprecated YAML validation)\nimport { createRequire } from 'module';\nconst require = createRequire(import.meta.url);\nconst agentSchema = require('../../schemas/agent.schema.json') as object;\n\nexport class AgentError extends Error {\n  constructor(\n    message: string,\n    public readonly code: AgentErrorCode,\n    public readonly details?: unknown\n  ) {\n    super(message);\n    this.name = 'AgentError';\n  }\n}\n\nexport type AgentErrorCode = 'NOT_FOUND' | 'PARSE_ERROR' | 'VALIDATION_ERROR' | 'READ_ERROR';\n\n/**\n * Extract YAML frontmatter from a Markdown file.\n * Returns the parsed frontmatter object and the body content.\n */\nexport function extractFrontmatter(content: string): { frontmatter: Record<string, unknown>; body: string } {\n  const match = content.match(/^---\\n([\\s\\S]*?)\\n---\\n?([\\s\\S]*)$/);\n  if (!match) {\n    throw new AgentError(\n      'No YAML frontmatter found. Agent MD files must start with YAML frontmatter (---)',\n      'PARSE_ERROR'\n    );\n  }\n\n  const frontmatterYaml = match[1]!;\n  const body = match[2] ?? '';\n  let frontmatter: unknown;\n  try {\n    frontmatter = parseYaml(frontmatterYaml);\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown parse error';\n    throw new AgentError(`Failed to parse YAML frontmatter: ${message}`, 'PARSE_ERROR', error);\n  }\n\n  if (!frontmatter || typeof frontmatter !== 'object') {\n    throw new AgentError('Invalid frontmatter: expected an object', 'PARSE_ERROR');\n  }\n\n  return { frontmatter: frontmatter as Record<string, unknown>, body };\n}\n\n/**\n * Load an agent definition from a Markdown template file.\n *\n * Extracts metadata from YAML frontmatter (name, description, tools).\n * The full MD content is the agent's identity - processed at compile time.\n */\nexport function loadAgentFromMdFile(filePath: string): AgentDefinition {\n  if (!existsSync(filePath)) {\n    throw new AgentError(`Agent file not found: ${filePath}`, 'NOT_FOUND');\n  }\n\n  let content: string;\n  try {\n    content = readFileSync(filePath, 'utf-8');\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown read error';\n    throw new AgentError(`Failed to read agent file ${filePath}: ${message}`, 'READ_ERROR', error);\n  }\n\n  const { frontmatter } = extractFrontmatter(content);\n\n  // Extract role from frontmatter 'name' field or filename\n  const role = (frontmatter.name as string) || getRoleFromFilename(filePath);\n  if (!role) {\n    throw new AgentError(\n      `Agent MD file must have a 'name' field in frontmatter or a valid filename: ${filePath}`,\n      'VALIDATION_ERROR'\n    );\n  }\n\n  // Extract description\n  const description = (frontmatter.description as string) || '';\n\n  // Extract tools\n  const tools: string[] | undefined = typeof frontmatter.tools === 'string'\n    ? frontmatter.tools.split(',').map((t: string) => t.trim()).filter(Boolean)\n    : undefined;\n\n  const definition: AgentDefinition = {\n    role,\n    type: 'ic-engineer', // Default, actual identity is in the MD content\n    display_name: role.split('-').map(w => w.charAt(0).toUpperCase() + w.slice(1)).join(' '),\n    description,\n  };\n\n  if (tools) {\n    definition.tools = tools;\n  }\n\n  return definition;\n}\n\n// --- Deprecated YAML support (backward compatibility) ---\n\n/**\n * Parse YAML content into an agent definition\n * @deprecated Use Markdown agent files instead\n */\nexport function parseAgentYaml(content: string, filePath?: string): unknown {\n  try {\n    return parseYaml(content);\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown parse error';\n    throw new AgentError(\n      `Failed to parse agent YAML${filePath ? ` in ${filePath}` : ''}: ${message}`,\n      'PARSE_ERROR',\n      error\n    );\n  }\n}\n\n/**\n * Validate parsed YAML against agent schema\n * @deprecated Use Markdown agent files instead\n */\nexport function validateAgentDefinition(agent: unknown): AgentDefinition {\n  const ajv = new Ajv.default({ allErrors: true, strict: false });\n  const validate = ajv.compile<AgentDefinition>(agentSchema);\n  const valid = validate(agent);\n\n  if (!valid) {\n    const errors: ErrorObject[] = validate.errors ?? [];\n    const errorMessages = errors.map((err: ErrorObject) => {\n      const path = err.instancePath || 'root';\n      return `${path}: ${err.message ?? 'unknown error'}`;\n    });\n\n    throw new AgentError(\n      `Agent validation failed:\\n  - ${errorMessages.join('\\n  - ')}`,\n      'VALIDATION_ERROR',\n      errors\n    );\n  }\n\n  return agent as AgentDefinition;\n}\n\n/**\n * Load and validate an agent definition from a YAML file\n * @deprecated Use Markdown agent files instead\n */\nexport function loadAgentFromYamlFile(filePath: string): AgentDefinition {\n  if (!existsSync(filePath)) {\n    throw new AgentError(`Agent file not found: ${filePath}`, 'NOT_FOUND');\n  }\n\n  let content: string;\n  try {\n    content = readFileSync(filePath, 'utf-8');\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown read error';\n    throw new AgentError(`Failed to read agent file ${filePath}: ${message}`, 'READ_ERROR', error);\n  }\n\n  const parsed = parseAgentYaml(content, filePath);\n  return validateAgentDefinition(parsed);\n}\n\n// --- Unified loading (supports both MD and YAML) ---\n\n/**\n * Load an agent definition from a file (MD or YAML).\n * MD files are the primary format. YAML files are deprecated but supported.\n */\nexport function loadAgentFromFile(filePath: string): AgentDefinition {\n  const ext = extname(filePath).toLowerCase();\n\n  if (ext === '.md') {\n    return loadAgentFromMdFile(filePath);\n  }\n\n  if (ext === '.yaml' || ext === '.yml') {\n    console.warn(\n      `Warning: YAML agent definitions are deprecated and will be removed in a future version.\\n` +\n      `  Please migrate ${basename(filePath)} to Markdown format.`\n    );\n    return loadAgentFromYamlFile(filePath);\n  }\n\n  throw new AgentError(\n    `Unsupported agent file format: ${ext}. Use .md (recommended) or .yaml/.yml (deprecated)`,\n    'PARSE_ERROR'\n  );\n}\n\n/**\n * List all agent files in a directory (MD and YAML).\n * Excludes files/directories starting with underscore (e.g., _templates/).\n */\nfunction listAgentFiles(dir: string): string[] {\n  if (!existsSync(dir)) {\n    return [];\n  }\n\n  return readdirSync(dir)\n    .filter((file) => {\n      // Skip underscore-prefixed files/dirs (templates, etc.)\n      if (file.startsWith('_')) return false;\n      const ext = extname(file).toLowerCase();\n      return ext === '.md' || ext === '.yaml' || ext === '.yml';\n    })\n    .map((file) => join(dir, file));\n}\n\n/**\n * Load all agents from a directory\n */\nexport function loadAgentsFromDirectory(\n  dir: string,\n  source: AgentSource\n): Map<string, AgentMetadata> {\n  const agents = new Map<string, AgentMetadata>();\n  const files = listAgentFiles(dir);\n\n  for (const filePath of files) {\n    try {\n      const definition = loadAgentFromFile(filePath);\n      agents.set(definition.role, {\n        definition,\n        source,\n        filePath,\n      });\n    } catch (error) {\n      // Log warning but continue loading other agents\n      const fileName = basename(filePath);\n      console.warn(`Warning: Failed to load agent from ${fileName}: ${(error as Error).message}`);\n    }\n  }\n\n  return agents;\n}\n\n/**\n * Get the agent role name from a filename\n */\nexport function getRoleFromFilename(filePath: string): string {\n  const fileName = basename(filePath);\n  const ext = extname(fileName);\n  return fileName.slice(0, -ext.length);\n}\n","/**\n * Variable Resolution System\n *\n * Resolves variable placeholders in agent definitions.\n * Supports: ${config.*}, ${agent.*}, ${remote.*}\n */\n\nimport type { CoreAIConfig } from '../config/types.js';\nimport type { AgentDefinition } from './types.js';\n\n/**\n * Context for variable resolution\n */\nexport interface ResolutionContext {\n  config?: CoreAIConfig;\n  agent?: AgentDefinition;\n}\n\n/**\n * Options for variable resolution\n */\nexport interface ResolutionOptions {\n  /**\n   * If true, throw an error for unresolved variables.\n   * If false, leave unresolved variables as-is.\n   * Default: false\n   */\n  strict?: boolean;\n}\n\n/**\n * Error thrown when variable resolution fails\n */\nexport class ResolutionError extends Error {\n  constructor(\n    message: string,\n    public readonly variable: string,\n    public readonly path?: string\n  ) {\n    super(message);\n    this.name = 'ResolutionError';\n  }\n}\n\n/**\n * Pattern to match variable placeholders: ${namespace.path.to.value}\n */\nconst VARIABLE_PATTERN = /\\$\\{([a-z_][a-z0-9_]*(?:\\.[a-z_][a-z0-9_]*)*)\\}/gi;\n\n/**\n * Get a nested value from an object using dot notation\n */\nfunction getNestedValue(obj: unknown, path: string): unknown {\n  const parts = path.split('.');\n  let current: unknown = obj;\n\n  for (const part of parts) {\n    if (current === null || current === undefined) {\n      return undefined;\n    }\n    if (typeof current !== 'object') {\n      return undefined;\n    }\n    current = (current as Record<string, unknown>)[part];\n  }\n\n  return current;\n}\n\n/**\n * Resolve a single variable reference\n */\nfunction resolveVariable(\n  variable: string,\n  context: ResolutionContext,\n  options: ResolutionOptions\n): string | undefined {\n  const parts = variable.split('.');\n  const namespace = parts[0];\n  const path = parts.slice(1).join('.');\n\n  let value: unknown;\n\n  switch (namespace) {\n    case 'config':\n      if (!context.config) {\n        if (options.strict) {\n          throw new ResolutionError(\n            `Cannot resolve \\${${variable}}: no config context provided`,\n            variable\n          );\n        }\n        return undefined;\n      }\n      value = getNestedValue(context.config, path);\n      break;\n\n    case 'agent':\n      if (!context.agent) {\n        if (options.strict) {\n          throw new ResolutionError(\n            `Cannot resolve \\${${variable}}: no agent context provided`,\n            variable\n          );\n        }\n        return undefined;\n      }\n      value = getNestedValue(context.agent, path);\n      break;\n\n    case 'remote':\n      // Remote is a shortcut for integration URLs\n      value = resolveRemoteVariable(path, context, options);\n      break;\n\n    default:\n      if (options.strict) {\n        throw new ResolutionError(`Unknown variable namespace: ${namespace}`, variable);\n      }\n      return undefined;\n  }\n\n  if (value === undefined) {\n    if (options.strict) {\n      throw new ResolutionError(`Cannot resolve \\${${variable}}: path not found`, variable, path);\n    }\n    return undefined;\n  }\n\n  // Convert value to string representation\n  if (typeof value === 'string') {\n    return value;\n  }\n  if (typeof value === 'number' || typeof value === 'boolean') {\n    return String(value);\n  }\n  // For objects/arrays, return JSON representation\n  return JSON.stringify(value);\n}\n\n/**\n * Resolve remote.* variables (shortcuts to integration URLs)\n */\nfunction resolveRemoteVariable(\n  path: string,\n  context: ResolutionContext,\n  options: ResolutionOptions\n): string | undefined {\n  if (!context.config?.integrations) {\n    if (options.strict) {\n      throw new ResolutionError(\n        `Cannot resolve \\${remote.${path}}: no integrations configured`,\n        `remote.${path}`\n      );\n    }\n    return undefined;\n  }\n\n  const integrations = context.config.integrations;\n\n  // Map remote shortcuts to integration paths\n  switch (path) {\n    case 'documentation':\n      return (\n        integrations.documentation?.config?.base_url ??\n        integrations.documentation?.config?.base_path\n      );\n\n    case 'issues':\n      return integrations.issue_tracker?.config?.base_url;\n\n    case 'git':\n      return integrations.git?.config?.repo;\n\n    case 'state':\n      return integrations.state?.config?.base_path ?? integrations.state?.config?.bucket;\n\n    default:\n      // Try to resolve as nested path under integrations\n      return getNestedValue(integrations, path) as string | undefined;\n  }\n}\n\n/**\n * Resolve all variables in a string\n */\nexport function resolveString(\n  input: string,\n  context: ResolutionContext,\n  options: ResolutionOptions = {}\n): string {\n  return input.replace(VARIABLE_PATTERN, (match, variable: string) => {\n    const resolved = resolveVariable(variable, context, options);\n    return resolved !== undefined ? resolved : match;\n  });\n}\n\n/**\n * Check if a string contains variable placeholders\n */\nexport function hasVariables(input: string): boolean {\n  // Create new regex to avoid state issues with global flag\n  const pattern = /\\$\\{([a-z_][a-z0-9_]*(?:\\.[a-z_][a-z0-9_]*)*)\\}/i;\n  return pattern.test(input);\n}\n\n/**\n * Extract all variable references from a string\n */\nexport function extractVariables(input: string): string[] {\n  const matches = input.matchAll(VARIABLE_PATTERN);\n  return Array.from(matches, (m) => m[1]).filter((v): v is string => v !== undefined);\n}\n\n/**\n * Recursively resolve all variables in an object\n */\nexport function resolveObject<T>(\n  obj: T,\n  context: ResolutionContext,\n  options: ResolutionOptions = {}\n): T {\n  if (obj === null || obj === undefined) {\n    return obj;\n  }\n\n  if (typeof obj === 'string') {\n    return resolveString(obj, context, options) as T;\n  }\n\n  if (Array.isArray(obj)) {\n    return obj.map((item) => resolveObject(item, context, options)) as T;\n  }\n\n  if (typeof obj === 'object') {\n    const result: Record<string, unknown> = {};\n    for (const [key, value] of Object.entries(obj)) {\n      result[key] = resolveObject(value, context, options);\n    }\n    return result as T;\n  }\n\n  return obj;\n}\n\n/**\n * Resolve all variables in an agent definition\n */\nexport function resolveAgentDefinition(\n  agent: AgentDefinition,\n  config?: CoreAIConfig,\n  options: ResolutionOptions = {}\n): AgentDefinition {\n  const context: ResolutionContext = {\n    agent,\n  };\n  if (config) {\n    context.config = config;\n  }\n\n  return resolveObject(agent, context, options);\n}\n","/**\n * Agent Compiler\n *\n * Processes agent Markdown templates with variable substitution and include directives.\n * For deprecated YAML agents, falls back to structural transformation.\n */\n\nimport { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';\nimport { join, dirname, extname, isAbsolute } from 'path';\nimport { parse as parseYaml, stringify as stringifyYaml } from 'yaml';\nimport type { CoreAIConfig } from '../config/types.js';\nimport type { AgentDefinition, AgentMetadata, AgentSource } from './types.js';\nimport { DEFAULT_AGENT_TOOLS } from './types.js';\nimport { loadAgentsFromDirectory } from './loader.js';\nimport { resolveString, resolveAgentDefinition, type ResolutionContext } from './resolver.js';\n\n/**\n * Options for compiling agents\n */\nexport interface CompileOptions {\n  outputDir?: string;\n  coreAgentsDir?: string;\n  customAgentsDir?: string;\n  projectRoot?: string;\n  filter?: (agent: AgentDefinition) => boolean;\n  mcpServers?: string[];\n}\n\n/**\n * Result of compiling agents\n */\nexport interface CompileResult {\n  compiled: {\n    role: string;\n    source: AgentSource;\n    outputPath: string;\n  }[];\n  errors: {\n    role: string;\n    source: AgentSource;\n    error: string;\n  }[];\n}\n\n/**\n * Build the tools string for agent frontmatter\n */\nexport function buildAgentTools(agent: AgentDefinition, mcpServers?: string[]): string {\n  const tools: string[] = agent.tools\n    ? [...agent.tools]\n    : [...DEFAULT_AGENT_TOOLS];\n\n  if (mcpServers && mcpServers.length > 0) {\n    for (const server of mcpServers) {\n      const mcpTool = `mcp__${server}`;\n      if (!tools.includes(mcpTool)) {\n        tools.push(mcpTool);\n      }\n    }\n  }\n\n  return tools.join(', ');\n}\n\n/**\n * Process include directives in a template.\n *\n * Replaces `<!-- include: path -->` with the contents of the referenced file.\n * Paths are resolved relative to the template's directory.\n * Supports recursive includes up to a configurable depth limit.\n */\nexport function processIncludes(\n  template: string,\n  templateDir: string,\n  depth: number = 0,\n  maxDepth: number = 3\n): string {\n  if (depth > maxDepth) {\n    throw new Error(`Include depth exceeded maximum of ${maxDepth}`);\n  }\n\n  const includePattern = /<!--\\s*include:\\s*(\\S+)\\s*-->/g;\n\n  return template.replace(includePattern, (_match, includePath: string) => {\n    const resolvedPath = isAbsolute(includePath)\n      ? includePath\n      : join(templateDir, includePath);\n\n    if (!existsSync(resolvedPath)) {\n      throw new Error(`Include file not found: ${includePath} (resolved to ${resolvedPath})`);\n    }\n\n    const includedContent = readFileSync(resolvedPath, 'utf-8');\n    return processIncludes(includedContent, dirname(resolvedPath), depth + 1, maxDepth);\n  });\n}\n\n/**\n * Process a Markdown agent template: expand includes, resolve variables, and update frontmatter tools.\n *\n * This is the primary compilation path for .md agent files.\n * Pipeline: read → expand includes → extract custom frontmatter → resolve variables → inject tools → rebuild.\n */\nexport function processAgentTemplate(\n  templatePath: string,\n  agent: AgentDefinition,\n  config?: CoreAIConfig,\n  mcpServers?: string[]\n): string {\n  const template = readFileSync(templatePath, 'utf-8');\n\n  // Step 1: Expand include directives before variable resolution\n  const templateDir = dirname(templatePath);\n  const expandedTemplate = processIncludes(template, templateDir);\n\n  // Step 2: Parse frontmatter early to extract custom agent fields (e.g. tech_artifacts)\n  const earlyMatch = expandedTemplate.match(/^---\\n([\\s\\S]*?)\\n---\\n?([\\s\\S]*)$/);\n  if (!earlyMatch) {\n    throw new Error(`Invalid markdown format in ${templatePath}: no frontmatter found`);\n  }\n\n  const earlyFrontmatter = parseYaml(earlyMatch[1]!) as Record<string, unknown>;\n  const reservedKeys = new Set(['name', 'description', 'tools']);\n  const extendedAgent: Record<string, unknown> = { ...agent };\n  for (const [key, value] of Object.entries(earlyFrontmatter)) {\n    if (!reservedKeys.has(key) && !(key in extendedAgent)) {\n      extendedAgent[key] = value;\n    }\n  }\n\n  // Step 3: Build resolution context with extended agent\n  const context: ResolutionContext = { agent: extendedAgent as unknown as AgentDefinition };\n  if (config) {\n    context.config = config;\n  }\n\n  // Step 4: Resolve variables in the expanded template\n  const resolved = resolveString(expandedTemplate, context);\n\n  // Step 5: Parse frontmatter from resolved template to update tools\n  const frontmatterMatch = resolved.match(/^---\\n([\\s\\S]*?)\\n---\\n?([\\s\\S]*)$/);\n  if (!frontmatterMatch) {\n    throw new Error(`Invalid markdown format after resolution in ${templatePath}`);\n  }\n\n  const frontmatterYaml = frontmatterMatch[1]!;\n  const body = frontmatterMatch[2] ?? '';\n  const frontmatter = parseYaml(frontmatterYaml) as Record<string, unknown>;\n\n  // Update tools line with MCP servers\n  const tools = buildAgentTools(agent, mcpServers);\n  frontmatter.tools = tools;\n\n  // Flatten description for frontmatter (single line)\n  if (typeof frontmatter.description === 'string') {\n    frontmatter.description = frontmatter.description.replace(/\\n/g, ' ').trim();\n  }\n\n  // Rebuild with updated frontmatter\n  const updatedFrontmatter = stringifyYaml(frontmatter, { lineWidth: 0 }).trim();\n  return `---\\n${updatedFrontmatter}\\n---\\n${body}`;\n}\n\n// --- Deprecated YAML compilation (backward compatibility) ---\n\n/**\n * Generate markdown content from a resolved YAML agent definition.\n * @deprecated Use MD templates instead. This exists for backward compatibility with YAML agents.\n */\nexport function generateAgentMarkdown(agent: AgentDefinition, mcpServers?: string[]): string {\n  const lines: string[] = [];\n  const tools = buildAgentTools(agent, mcpServers);\n\n  // YAML frontmatter\n  lines.push('---');\n  lines.push(`name: ${agent.role}`);\n  lines.push(`description: ${agent.description.replace(/\\n/g, ' ').trim()}`);\n  lines.push(`tools: ${tools}`);\n  lines.push('---');\n  lines.push('');\n\n  // Header\n  lines.push(`# ${agent.display_name}`);\n  lines.push('');\n  lines.push(`**Role:** ${agent.role}`);\n  lines.push(`**Type:** ${agent.type}`);\n  lines.push('');\n\n  // Description\n  lines.push('## Description');\n  lines.push('');\n  lines.push(agent.description.trim());\n  lines.push('');\n\n  // Responsibilities\n  if (agent.responsibilities && agent.responsibilities.length > 0) {\n    lines.push('## Responsibilities');\n    lines.push('');\n    for (const r of agent.responsibilities) {\n      lines.push(`- ${r}`);\n    }\n    lines.push('');\n  }\n\n  // Expertise\n  if (agent.expertise) {\n    lines.push('## Expertise');\n    lines.push('');\n    if (agent.expertise.primary && agent.expertise.primary.length > 0) {\n      lines.push('### Primary Areas');\n      lines.push('');\n      for (const area of agent.expertise.primary) {\n        lines.push(`- ${area}`);\n      }\n      lines.push('');\n    }\n    if (agent.expertise.tech_stack) {\n      lines.push('### Tech Stack');\n      lines.push('');\n      const ts = agent.expertise.tech_stack;\n      if (typeof ts === 'string') {\n        lines.push(ts);\n      } else if (typeof ts === 'object') {\n        lines.push('```json');\n        lines.push(JSON.stringify(ts, null, 2));\n        lines.push('```');\n      }\n      lines.push('');\n    }\n  }\n\n  // Skills\n  if (agent.skills && agent.skills.length > 0) {\n    lines.push('## Skills');\n    lines.push('');\n    for (const skill of agent.skills) {\n      lines.push(`- ${skill}`);\n    }\n    lines.push('');\n  }\n\n  // Principles\n  if (agent.principles) {\n    lines.push('## Principles');\n    lines.push('');\n    for (const [category, items] of Object.entries(agent.principles)) {\n      if (items && Array.isArray(items) && items.length > 0) {\n        const title = category.replace(/[_-]/g, ' ').replace(/\\b\\w/g, (c) => c.toUpperCase());\n        lines.push(`### ${title}`);\n        lines.push('');\n        for (const item of items) {\n          lines.push(`- ${item}`);\n        }\n        lines.push('');\n      }\n    }\n  }\n\n  // Behaviors\n  if (agent.behaviors) {\n    lines.push('## Behaviors');\n    lines.push('');\n    if (agent.behaviors.workflow) {\n      lines.push(`**Workflow:** ${agent.behaviors.workflow}`);\n      lines.push('');\n    }\n    if (agent.behaviors.quality_gates) {\n      lines.push('### Quality Gates');\n      lines.push('');\n      const gates = agent.behaviors.quality_gates;\n      if (typeof gates === 'string') {\n        lines.push(gates);\n      } else if (typeof gates === 'object') {\n        lines.push('```json');\n        lines.push(JSON.stringify(gates, null, 2));\n        lines.push('```');\n      }\n      lines.push('');\n    }\n  }\n\n  // Knowledge Library\n  if (agent.knowledge_library) {\n    generateKnowledgeLibrarySection(agent, lines);\n  }\n\n  // Communication\n  if (agent.communication) {\n    generateCommunicationSection(agent, lines);\n  }\n\n  // Protocols\n  if (agent.protocols?.startup) {\n    generateStartupProtocolSection(agent, lines);\n  }\n  if (agent.protocols?.completion) {\n    generateCompletionProtocolSection(agent, lines);\n  }\n\n  // Legacy context sources\n  if (agent.context_sources && !agent.knowledge_library) {\n    lines.push('## Context Sources');\n    lines.push('');\n    if (agent.context_sources.shared?.length) {\n      lines.push('### Shared');\n      lines.push('');\n      for (const s of agent.context_sources.shared) lines.push(`- ${s}`);\n      lines.push('');\n    }\n    if (agent.context_sources.personal?.length) {\n      lines.push('### Personal');\n      lines.push('');\n      for (const p of agent.context_sources.personal) lines.push(`- ${p}`);\n      lines.push('');\n    }\n  }\n\n  lines.push('---');\n  lines.push('');\n  lines.push('*Generated by CoreAI*');\n  lines.push('');\n\n  return lines.join('\\n');\n}\n\nfunction generateKnowledgeLibrarySection(agent: AgentDefinition, lines: string[]): void {\n  const kl = agent.knowledge_library;\n  if (!kl) return;\n  lines.push('## Knowledge Library Structure');\n  lines.push('');\n  if (kl.shared) {\n    lines.push('### Shared Context (Root - All Agents)');\n    lines.push('```');\n    lines.push('/KnowledgeLibrary/');\n    if (kl.shared.context) lines.push(`├── ${kl.shared.context.split('/').pop()}`);\n    if (kl.shared.architecture) lines.push(`├── ${kl.shared.architecture.split('/').pop()}`);\n    if (kl.shared.prd) lines.push(`└── ${kl.shared.prd.split('/').pop()}`);\n    lines.push('```');\n    if (kl.shared.remote?.length) {\n      lines.push('');\n      lines.push('**Remote Documentation:**');\n      for (const r of kl.shared.remote) lines.push(`- ${r}`);\n    }\n    lines.push('');\n  }\n  if (kl.personal) {\n    lines.push(`### Personal Context (${agent.role})`);\n    lines.push('```');\n    lines.push(`/KnowledgeLibrary/${agent.role}/`);\n    if (kl.personal.context) { lines.push('├── context/'); lines.push('│   └── current.txt'); }\n    if (kl.personal.history) { lines.push('├── history/'); }\n    if (kl.personal.inbox) { lines.push('├── inbox/'); }\n    if (kl.personal.outbox) { lines.push('├── outbox/'); }\n    if (kl.personal.tech) { lines.push('├── tech/'); }\n    if (kl.personal.control) {\n      lines.push('└── control/');\n      if (kl.personal.control.objectives) lines.push('    ├── objectives.txt');\n      if (kl.personal.control.decisions) lines.push('    ├── decisions.txt');\n      if (kl.personal.control.dependencies) lines.push('    ├── dependencies.txt');\n      if (kl.personal.control.index) lines.push('    └── index.txt');\n    }\n    lines.push('```');\n    lines.push('');\n  }\n  lines.push('---');\n  lines.push('');\n}\n\nfunction generateCommunicationSection(agent: AgentDefinition, lines: string[]): void {\n  const comm = agent.communication;\n  if (!comm) return;\n  lines.push('## Communication');\n  lines.push('');\n  if (comm.inbox) lines.push(`**Inbox:** \\`${comm.inbox}\\``);\n  if (comm.outbox) lines.push(`**Outbox:** \\`${comm.outbox}\\``);\n  lines.push('');\n  if (comm.message_format || comm.outbox_format || comm.processed_dir) {\n    lines.push('### Message Conventions');\n    lines.push('');\n    if (comm.message_format) lines.push(`- **Inbox message naming:** \\`${comm.message_format}\\``);\n    if (comm.outbox_format) lines.push(`- **Outbox message naming:** \\`${comm.outbox_format}\\``);\n    if (comm.processed_dir) lines.push(`- **Processed messages:** Move handled inbox messages to \\`${comm.processed_dir}\\``);\n    lines.push('');\n  }\n}\n\nfunction generateStartupProtocolSection(agent: AgentDefinition, lines: string[]): void {\n  const p = agent.protocols;\n  if (!p?.startup) return;\n  lines.push('## When Invoked');\n  lines.push('');\n  lines.push('> **MANDATORY STARTUP PROTOCOL** - Execute before proceeding with any task.');\n  lines.push('');\n  lines.push('### Session Context Check');\n  lines.push('');\n  if (p.startup.first_session?.length) {\n    lines.push('**If this is your FIRST invocation in this session:**');\n    lines.push('');\n    for (const s of p.startup.first_session) lines.push(`- [ ] ${s}`);\n    lines.push('');\n    lines.push('Acknowledge: \"Startup protocol complete. Full context loaded.\"');\n    lines.push('');\n  }\n  if (p.startup.subsequent?.length) {\n    lines.push('**If you have ALREADY loaded context in this session:**');\n    lines.push('');\n    for (const s of p.startup.subsequent) lines.push(`- [ ] ${s}`);\n    lines.push('');\n    lines.push('Acknowledge: \"Context already loaded. Checked inbox for new messages.\"');\n    lines.push('');\n  }\n  lines.push('Then proceed with the task.');\n  lines.push('');\n  lines.push('---');\n  lines.push('');\n}\n\nfunction generateCompletionProtocolSection(agent: AgentDefinition, lines: string[]): void {\n  const p = agent.protocols;\n  if (!p?.completion?.length) return;\n  lines.push('## Before Finishing');\n  lines.push('');\n  lines.push('> **MANDATORY COMPLETION PROTOCOL** - Execute ALL steps before ending any task.');\n  lines.push('');\n  for (let i = 0; i < p.completion.length; i++) {\n    lines.push(`### ${i + 1}. ${p.completion[i]}`);\n    lines.push('');\n  }\n  lines.push('Acknowledge: \"Completion protocol finished. Context updated.\"');\n  lines.push('');\n  lines.push('---');\n  lines.push('');\n}\n\n// --- Unified compilation ---\n\n/**\n * Compile a single agent.\n * MD templates use simple variable substitution.\n * YAML files use the deprecated structural transformation.\n */\nexport function compileAgent(\n  agent: AgentDefinition,\n  filePath: string,\n  config?: CoreAIConfig,\n  mcpServers?: string[]\n): string {\n  const ext = extname(filePath).toLowerCase();\n\n  if (ext === '.md') {\n    return processAgentTemplate(filePath, agent, config, mcpServers);\n  }\n\n  // Deprecated YAML path\n  const resolved = resolveAgentDefinition(agent, config);\n  return generateAgentMarkdown(resolved, mcpServers);\n}\n\n/**\n * Load all agents from core and custom directories\n */\nexport function loadAllAgents(options: CompileOptions = {}): Map<string, AgentMetadata> {\n  const agents = new Map<string, AgentMetadata>();\n\n  if (options.coreAgentsDir && existsSync(options.coreAgentsDir)) {\n    const coreAgents = loadAgentsFromDirectory(options.coreAgentsDir, 'core');\n    for (const [role, metadata] of coreAgents) {\n      agents.set(role, metadata);\n    }\n  }\n\n  if (options.customAgentsDir && existsSync(options.customAgentsDir)) {\n    const customAgents = loadAgentsFromDirectory(options.customAgentsDir, 'custom');\n    for (const [role, metadata] of customAgents) {\n      if (agents.has(role)) {\n        metadata.source = 'override';\n      }\n      agents.set(role, metadata);\n    }\n  }\n\n  return agents;\n}\n\n/**\n * Filter agents based on team configuration\n */\nexport function filterAgentsByTeam(\n  agents: Map<string, AgentMetadata>,\n  config?: CoreAIConfig\n): Map<string, AgentMetadata> {\n  if (!config?.team?.agents || config.team.agents.length === 0) {\n    return agents;\n  }\n\n  const filtered = new Map<string, AgentMetadata>();\n  for (const [role, metadata] of agents) {\n    if (metadata.source === 'custom' || metadata.source === 'override') {\n      filtered.set(role, metadata);\n    } else if (config.team.agents.includes(role)) {\n      filtered.set(role, metadata);\n    }\n  }\n\n  return filtered;\n}\n\n/**\n * Compile all agents and write to output directory\n */\nexport function compileAgents(config?: CoreAIConfig, options: CompileOptions = {}): CompileResult {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const outputDir = options.outputDir ?? join(projectRoot, '.claude', 'agents');\n  const coreAgentsDir = options.coreAgentsDir ?? getCoreAgentsDir();\n  const customAgentsDir = options.customAgentsDir ?? join(projectRoot, 'coreai', 'agents');\n\n  const result: CompileResult = {\n    compiled: [],\n    errors: [],\n  };\n\n  const allAgents = loadAllAgents({\n    ...options,\n    coreAgentsDir,\n    customAgentsDir,\n  });\n\n  const agents = filterAgentsByTeam(allAgents, config);\n\n  if (!existsSync(outputDir)) {\n    mkdirSync(outputDir, { recursive: true });\n  }\n\n  for (const [role, metadata] of agents) {\n    if (options.filter && !options.filter(metadata.definition)) {\n      continue;\n    }\n\n    try {\n      const markdown = compileAgent(\n        metadata.definition,\n        metadata.filePath,\n        config,\n        options.mcpServers\n      );\n      const outputPath = join(outputDir, `${role}.md`);\n      writeFileSync(outputPath, markdown, 'utf-8');\n\n      result.compiled.push({\n        role,\n        source: metadata.source,\n        outputPath,\n      });\n    } catch (error) {\n      result.errors.push({\n        role,\n        source: metadata.source,\n        error: error instanceof Error ? error.message : String(error),\n      });\n    }\n  }\n\n  return result;\n}\n\n/**\n * Get the default core agents directory\n */\nexport function getCoreAgentsDir(): string {\n  let currentDir = dirname(import.meta.url.replace('file://', ''));\n  for (let i = 0; i < 5; i++) {\n    if (existsSync(join(currentDir, 'package.json'))) {\n      return join(currentDir, 'agents');\n    }\n    currentDir = dirname(currentDir);\n  }\n  return join(dirname(dirname(dirname(import.meta.url.replace('file://', '')))), 'agents');\n}\n","/**\n * Adapter Types\n *\n * Common types used across all adapters.\n */\n\n/**\n * The type of adapter\n */\nexport type AdapterType = 'issue_tracker' | 'git' | 'documentation' | 'state';\n\n/**\n * How the adapter connects to the service\n */\nexport type AdapterImplementation = 'mcp' | 'native' | 'mock';\n\n/**\n * Base metadata for all adapters\n */\nexport interface AdapterInfo {\n  /**\n   * Type of adapter\n   */\n  type: AdapterType;\n\n  /**\n   * Provider name (e.g., 'github', 'jira', 'confluence')\n   */\n  provider: string;\n\n  /**\n   * How this adapter is implemented\n   */\n  implementation: AdapterImplementation;\n\n  /**\n   * Whether the adapter is currently connected/available\n   */\n  connected: boolean;\n}\n\n/**\n * Common issue status values\n */\nexport type IssueStatus =\n  | 'backlog'\n  | 'todo'\n  | 'in_progress'\n  | 'in_review'\n  | 'done'\n  | 'closed'\n  | string;\n\n/**\n * Common pull request status values\n */\nexport type PullRequestStatus = 'open' | 'merged' | 'closed' | 'draft';\n\n/**\n * Common review decision values\n */\nexport type ReviewDecision = 'approve' | 'request_changes' | 'comment';\n\n/**\n * Issue data structure\n */\nexport interface Issue {\n  id: string;\n  key: string;\n  title: string;\n  description?: string;\n  status: IssueStatus;\n  assignee?: string;\n  reporter?: string;\n  labels?: string[];\n  priority?: string;\n  created_at?: string;\n  updated_at?: string;\n  url?: string;\n}\n\n/**\n * Data for creating an issue\n */\nexport interface CreateIssueData {\n  title: string;\n  description?: string;\n  assignee?: string;\n  labels?: string[];\n  priority?: string;\n  type?: string;\n}\n\n/**\n * Data for updating an issue\n */\nexport interface UpdateIssueData {\n  title?: string;\n  description?: string;\n  assignee?: string;\n  labels?: string[];\n  priority?: string;\n  status?: IssueStatus;\n}\n\n/**\n * Query parameters for listing issues\n */\nexport interface IssueQuery {\n  assignee?: string;\n  status?: IssueStatus | IssueStatus[];\n  labels?: string[];\n  limit?: number;\n  offset?: number;\n}\n\n/**\n * Pull request data structure\n */\nexport interface PullRequest {\n  id: string;\n  number: number;\n  title: string;\n  description?: string;\n  status: PullRequestStatus;\n  author?: string;\n  source_branch: string;\n  target_branch: string;\n  created_at?: string;\n  updated_at?: string;\n  merged_at?: string;\n  url?: string;\n  reviewers?: string[];\n}\n\n/**\n * Data for creating a pull request\n */\nexport interface CreatePullRequestData {\n  title: string;\n  description?: string;\n  source_branch: string;\n  target_branch: string;\n  draft?: boolean;\n  reviewers?: string[];\n}\n\n/**\n * Query parameters for listing pull requests\n */\nexport interface PullRequestQuery {\n  status?: PullRequestStatus | PullRequestStatus[];\n  author?: string;\n  limit?: number;\n  offset?: number;\n}\n\n/**\n * Review data for a pull request\n */\nexport interface Review {\n  id: string;\n  pull_request_id: string;\n  author: string;\n  decision: ReviewDecision;\n  body?: string;\n  created_at?: string;\n}\n\n/**\n * Data for creating a review\n */\nexport interface CreateReviewData {\n  decision: ReviewDecision;\n  body?: string;\n  comments?: ReviewComment[];\n}\n\n/**\n * Comment on a specific line in a review\n */\nexport interface ReviewComment {\n  path: string;\n  line: number;\n  body: string;\n}\n\n/**\n * Documentation page data structure\n */\nexport interface DocumentationPage {\n  id: string;\n  title: string;\n  content?: string;\n  path?: string;\n  url?: string;\n  parent_id?: string;\n  created_at?: string;\n  updated_at?: string;\n}\n\n/**\n * Query parameters for searching documentation\n */\nexport interface DocumentationQuery {\n  query: string;\n  space?: string;\n  limit?: number;\n}\n\n/**\n * File/directory entry for state provider\n */\nexport interface StateEntry {\n  path: string;\n  name: string;\n  type: 'file' | 'directory';\n  size?: number;\n  modified_at?: string;\n}\n\n/**\n * Options for state operations\n */\nexport interface StateOptions {\n  /**\n   * Create parent directories if they don't exist\n   */\n  recursive?: boolean;\n\n  /**\n   * Encoding for text content\n   */\n  encoding?: BufferEncoding;\n}\n\n/**\n * Adapter error with context\n */\nexport class AdapterError extends Error {\n  public readonly code: AdapterErrorCode;\n  public readonly adapter?: AdapterInfo;\n\n  constructor(message: string, code: AdapterErrorCode, adapter?: AdapterInfo, cause?: Error) {\n    super(message, { cause });\n    this.name = 'AdapterError';\n    this.code = code;\n    if (adapter) {\n      this.adapter = adapter;\n    }\n  }\n}\n\n/**\n * Error codes for adapter operations\n */\nexport type AdapterErrorCode =\n  | 'not_found'\n  | 'unauthorized'\n  | 'forbidden'\n  | 'rate_limited'\n  | 'network_error'\n  | 'invalid_request'\n  | 'not_implemented'\n  | 'connection_failed'\n  | 'provider_error'\n  | 'operation_failed'\n  | 'invalid_operation'\n  | 'not_connected'\n  | 'invalid_config';\n","/**\n * Adapter Factory\n *\n * Creates and manages adapter instances based on configuration.\n */\n\nimport type { CoreAIConfig, AdapterStrategy } from '../config/types.js';\nimport type { AdapterType, AdapterInfo, AdapterImplementation } from './types.js';\nimport { AdapterError } from './types.js';\nimport type {\n  IssueTrackerAdapter,\n  GitProviderAdapter,\n  DocumentationProviderAdapter,\n  StateProviderAdapter,\n  Adapter,\n} from './interfaces.js';\n\n/**\n * Options for creating an adapter\n */\nexport interface AdapterFactoryOptions {\n  /**\n   * Override the strategy from config\n   */\n  strategy?: AdapterStrategy;\n\n  /**\n   * Force a specific implementation\n   */\n  implementation?: AdapterImplementation;\n}\n\n/**\n * Registry of adapter creators\n */\ninterface AdapterCreator<T extends Adapter> {\n  mcp?: (config: CoreAIConfig) => Promise<T>;\n  native?: (config: CoreAIConfig) => Promise<T>;\n  mock?: (config: CoreAIConfig) => Promise<T>;\n}\n\n/**\n * Adapter Factory\n *\n * Creates adapter instances based on configuration and available implementations.\n */\nexport class AdapterFactory {\n  private config: CoreAIConfig;\n  private adapters = new Map<AdapterType, Adapter>();\n\n  /**\n   * Registry of adapter creators by type\n   */\n  private creators: {\n    issue_tracker: AdapterCreator<IssueTrackerAdapter>;\n    git: AdapterCreator<GitProviderAdapter>;\n    documentation: AdapterCreator<DocumentationProviderAdapter>;\n    state: AdapterCreator<StateProviderAdapter>;\n  } = {\n    issue_tracker: {},\n    git: {},\n    documentation: {},\n    state: {},\n  };\n\n  constructor(config: CoreAIConfig) {\n    this.config = config;\n  }\n\n  /**\n   * Register an adapter creator\n   */\n  registerCreator<T extends AdapterType>(\n    type: T,\n    implementation: AdapterImplementation,\n    creator: (config: CoreAIConfig) => Promise<Adapter>\n  ): void {\n    const typeCreators = this.creators[type] as AdapterCreator<Adapter>;\n    typeCreators[implementation] = creator;\n  }\n\n  /**\n   * Get an issue tracker adapter\n   */\n  async getIssueTracker(options?: AdapterFactoryOptions): Promise<IssueTrackerAdapter> {\n    return this.getAdapter('issue_tracker', options) as Promise<IssueTrackerAdapter>;\n  }\n\n  /**\n   * Get a git provider adapter\n   */\n  async getGitProvider(options?: AdapterFactoryOptions): Promise<GitProviderAdapter> {\n    return this.getAdapter('git', options) as Promise<GitProviderAdapter>;\n  }\n\n  /**\n   * Get a documentation provider adapter\n   */\n  async getDocumentationProvider(\n    options?: AdapterFactoryOptions\n  ): Promise<DocumentationProviderAdapter> {\n    return this.getAdapter('documentation', options) as Promise<DocumentationProviderAdapter>;\n  }\n\n  /**\n   * Get a state provider adapter\n   */\n  async getStateProvider(options?: AdapterFactoryOptions): Promise<StateProviderAdapter> {\n    return this.getAdapter('state', options) as Promise<StateProviderAdapter>;\n  }\n\n  /**\n   * Get an adapter by type\n   */\n  async getAdapter(type: AdapterType, options?: AdapterFactoryOptions): Promise<Adapter> {\n    // Check if we already have this adapter cached\n    const cached = this.adapters.get(type);\n    if (cached && cached.isConnected()) {\n      return cached;\n    }\n\n    // Determine the strategy\n    const strategy = this.getStrategy(type, options);\n\n    // Get the implementation to use\n    const implementation = options?.implementation ?? this.selectImplementation(type, strategy);\n\n    // Create the adapter\n    const adapter = await this.createAdapter(type, implementation);\n\n    // Cache it\n    this.adapters.set(type, adapter);\n\n    return adapter;\n  }\n\n  /**\n   * Check if an adapter type is configured\n   */\n  hasIntegration(type: AdapterType): boolean {\n    const integrations = this.config.integrations;\n    if (!integrations) return false;\n\n    switch (type) {\n      case 'issue_tracker':\n        return !!integrations.issue_tracker?.provider;\n      case 'git':\n        return !!integrations.git?.provider;\n      case 'documentation':\n        return !!integrations.documentation?.provider;\n      case 'state':\n        return !!integrations.state?.provider;\n      default:\n        return false;\n    }\n  }\n\n  /**\n   * Get information about a configured integration\n   */\n  getIntegrationInfo(type: AdapterType): { provider: string; strategy: AdapterStrategy } | null {\n    const integrations = this.config.integrations;\n    if (!integrations) return null;\n\n    let integration;\n    switch (type) {\n      case 'issue_tracker':\n        integration = integrations.issue_tracker;\n        break;\n      case 'git':\n        integration = integrations.git;\n        break;\n      case 'documentation':\n        integration = integrations.documentation;\n        break;\n      case 'state':\n        integration = integrations.state;\n        break;\n    }\n\n    if (!integration?.provider) return null;\n\n    return {\n      provider: integration.provider,\n      strategy: integration.strategy ?? 'auto',\n    };\n  }\n\n  /**\n   * Disconnect and clear all cached adapters\n   */\n  async disconnectAll(): Promise<void> {\n    const disconnects: Promise<void>[] = [];\n\n    for (const adapter of this.adapters.values()) {\n      if (adapter.isConnected()) {\n        disconnects.push(adapter.disconnect());\n      }\n    }\n\n    await Promise.all(disconnects);\n    this.adapters.clear();\n  }\n\n  /**\n   * Get the strategy for an adapter type\n   */\n  private getStrategy(type: AdapterType, options?: AdapterFactoryOptions): AdapterStrategy {\n    if (options?.strategy) {\n      return options.strategy;\n    }\n\n    const info = this.getIntegrationInfo(type);\n    return info?.strategy ?? 'auto';\n  }\n\n  /**\n   * Select the implementation based on strategy and availability\n   */\n  private selectImplementation(\n    type: AdapterType,\n    strategy: AdapterStrategy\n  ): AdapterImplementation {\n    const creators = this.creators[type];\n\n    switch (strategy) {\n      case 'mcp':\n        if (creators.mcp) return 'mcp';\n        throw new AdapterError(\n          `MCP adapter not available for ${type}`,\n          'not_implemented',\n          undefined\n        );\n\n      case 'native':\n        if (creators.native) return 'native';\n        throw new AdapterError(\n          `Native adapter not available for ${type}`,\n          'not_implemented',\n          undefined\n        );\n\n      case 'auto':\n      default:\n        // Prefer MCP, fall back to native\n        if (creators.mcp) return 'mcp';\n        if (creators.native) return 'native';\n        if (creators.mock) return 'mock';\n\n        throw new AdapterError(\n          `No adapter implementation available for ${type}`,\n          'not_implemented',\n          undefined\n        );\n    }\n  }\n\n  /**\n   * Create an adapter instance\n   */\n  private async createAdapter(\n    type: AdapterType,\n    implementation: AdapterImplementation\n  ): Promise<Adapter> {\n    const creators = this.creators[type];\n    const creator = creators[implementation];\n\n    if (!creator) {\n      throw new AdapterError(\n        `No ${implementation} adapter creator registered for ${type}`,\n        'not_implemented',\n        undefined\n      );\n    }\n\n    const adapter = await creator(this.config);\n    await adapter.connect();\n\n    return adapter;\n  }\n}\n\n/**\n * Create an adapter factory from configuration\n */\nexport function createAdapterFactory(config: CoreAIConfig): AdapterFactory {\n  return new AdapterFactory(config);\n}\n\n/**\n * Create adapter info helper\n */\nexport function createAdapterInfo(\n  type: AdapterType,\n  provider: string,\n  implementation: AdapterImplementation,\n  connected = false\n): AdapterInfo {\n  return {\n    type,\n    provider,\n    implementation,\n    connected,\n  };\n}\n","/**\n * MCP Client Wrapper\n *\n * Provides a simplified interface for connecting to and communicating with MCP servers.\n */\n\nimport { Client } from '@modelcontextprotocol/sdk/client/index.js';\nimport { StdioClientTransport } from '@modelcontextprotocol/sdk/client/stdio.js';\nimport type { Transport } from '@modelcontextprotocol/sdk/shared/transport.js';\nimport type {\n  McpServerConfig,\n  McpServerInfo,\n  McpTool,\n  McpResource,\n  McpToolResult,\n  McpCapabilities,\n  McpContent,\n  StdioServerConfig,\n} from './types.js';\nimport { McpError } from './types.js';\n\n/**\n * Options for creating an MCP client\n */\nexport interface McpClientOptions {\n  /**\n   * Client name to report to servers\n   */\n  clientName?: string;\n\n  /**\n   * Client version to report to servers\n   */\n  clientVersion?: string;\n\n  /**\n   * Timeout for operations in milliseconds\n   */\n  timeout?: number;\n}\n\nconst DEFAULT_OPTIONS: Required<McpClientOptions> = {\n  clientName: 'coreai',\n  clientVersion: '0.1.0',\n  timeout: 30000,\n};\n\n/**\n * MCP Client Wrapper\n *\n * Manages a connection to a single MCP server and provides\n * a simplified API for tool calls, resource access, etc.\n */\nexport class McpClient {\n  private client: Client | null = null;\n  private transport: Transport | null = null;\n  private _serverInfo: McpServerInfo | null = null;\n  private options: Required<McpClientOptions>;\n  private serverName: string;\n  private config: McpServerConfig;\n\n  constructor(serverName: string, config: McpServerConfig, options?: McpClientOptions) {\n    this.serverName = serverName;\n    this.config = config;\n    this.options = { ...DEFAULT_OPTIONS, ...options };\n  }\n\n  /**\n   * Connect to the MCP server\n   */\n  async connect(): Promise<void> {\n    if (this.client && this.isConnected()) {\n      return;\n    }\n\n    try {\n      // Create the appropriate transport\n      this.transport = await this.createTransport();\n\n      // Create the MCP client\n      this.client = new Client(\n        {\n          name: this.options.clientName,\n          version: this.options.clientVersion,\n        },\n        {\n          capabilities: {\n            roots: { listChanged: true },\n          },\n        }\n      );\n\n      // Connect to the server\n      await this.client.connect(this.transport);\n\n      // Store server info\n      const serverVersion = this.client.getServerVersion();\n      const serverCapabilities = this.client.getServerCapabilities();\n\n      const info: McpServerInfo = {\n        name: this.serverName,\n        connected: true,\n      };\n\n      if (serverVersion?.version) {\n        info.version = serverVersion.version;\n      }\n\n      const caps = this.parseCapabilities(serverCapabilities);\n      if (caps) {\n        info.capabilities = caps;\n      }\n\n      const instructions = this.client.getInstructions();\n      if (instructions) {\n        info.instructions = instructions;\n      }\n\n      this._serverInfo = info;\n    } catch (error) {\n      throw new McpError(\n        `Failed to connect to MCP server \"${this.serverName}\": ${error instanceof Error ? error.message : String(error)}`,\n        'connection_failed',\n        this.serverName,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Disconnect from the MCP server\n   */\n  async disconnect(): Promise<void> {\n    if (this.transport) {\n      await this.transport.close();\n      this.transport = null;\n    }\n\n    this.client = null;\n\n    if (this._serverInfo) {\n      this._serverInfo.connected = false;\n    }\n  }\n\n  /**\n   * Check if connected to the server\n   */\n  isConnected(): boolean {\n    return this._serverInfo?.connected ?? false;\n  }\n\n  /**\n   * Get server information\n   */\n  getServerInfo(): McpServerInfo | null {\n    return this._serverInfo;\n  }\n\n  /**\n   * List available tools from the server\n   */\n  async listTools(): Promise<McpTool[]> {\n    const client = this.ensureConnected();\n\n    const result = await client.listTools();\n\n    return result.tools.map((tool) => {\n      // Build inputSchema with only defined properties\n      const inputSchema: McpTool['inputSchema'] = { type: 'object' };\n      if (tool.inputSchema.properties) {\n        inputSchema.properties = tool.inputSchema.properties as Record<string, unknown>;\n      }\n      if (tool.inputSchema.required) {\n        inputSchema.required = tool.inputSchema.required;\n      }\n\n      const mapped: McpTool = {\n        name: tool.name,\n        inputSchema,\n      };\n\n      if (tool.description) {\n        mapped.description = tool.description;\n      }\n\n      if (tool.annotations) {\n        const annotations: McpTool['annotations'] = {};\n        if (tool.annotations.title) annotations.title = tool.annotations.title;\n        if (tool.annotations.readOnlyHint !== undefined)\n          annotations.readOnlyHint = tool.annotations.readOnlyHint;\n        if (tool.annotations.destructiveHint !== undefined)\n          annotations.destructiveHint = tool.annotations.destructiveHint;\n        if (tool.annotations.idempotentHint !== undefined)\n          annotations.idempotentHint = tool.annotations.idempotentHint;\n        if (Object.keys(annotations).length > 0) {\n          mapped.annotations = annotations;\n        }\n      }\n\n      return mapped;\n    });\n  }\n\n  /**\n   * Call a tool on the server\n   */\n  async callTool(name: string, args?: Record<string, unknown>): Promise<McpToolResult> {\n    const client = this.ensureConnected();\n\n    try {\n      const result = await client.callTool({\n        name,\n        arguments: args,\n      });\n\n      // Handle the different result formats\n      if ('content' in result && Array.isArray(result.content)) {\n        const content: McpContent[] = [];\n\n        for (const c of result.content) {\n          if (typeof c === 'object' && c !== null && 'type' in c) {\n            const item = c as { type: string; [key: string]: unknown };\n            if (item.type === 'text' && typeof item.text === 'string') {\n              content.push({ type: 'text', text: item.text });\n            } else if (\n              item.type === 'image' &&\n              typeof item.data === 'string' &&\n              typeof item.mimeType === 'string'\n            ) {\n              content.push({ type: 'image', data: item.data, mimeType: item.mimeType });\n            } else if (item.type === 'resource' && typeof item.resource === 'object') {\n              const res = item.resource as {\n                uri: string;\n                text?: string;\n                blob?: string;\n                mimeType?: string;\n              };\n              const resourceContent: {\n                uri: string;\n                text?: string;\n                blob?: string;\n                mimeType?: string;\n              } = {\n                uri: res.uri,\n              };\n              if (res.text) resourceContent.text = res.text;\n              if (res.blob) resourceContent.blob = res.blob;\n              if (res.mimeType) resourceContent.mimeType = res.mimeType;\n              content.push({\n                type: 'resource',\n                resource: resourceContent,\n              });\n            } else {\n              // Default to text for unknown types\n              content.push({ type: 'text', text: JSON.stringify(c) });\n            }\n          }\n        }\n\n        const toolResult: McpToolResult = { content };\n\n        if (typeof result.isError === 'boolean') {\n          toolResult.isError = result.isError;\n        }\n\n        if (typeof result.structuredContent === 'object' && result.structuredContent !== null) {\n          toolResult.structuredContent = result.structuredContent as Record<string, unknown>;\n        }\n\n        return toolResult;\n      }\n\n      // Handle legacy toolResult format\n      if ('toolResult' in result) {\n        return {\n          content: [{ type: 'text', text: JSON.stringify(result.toolResult) }],\n        };\n      }\n\n      return {\n        content: [],\n      };\n    } catch (error) {\n      throw new McpError(\n        `Failed to call tool \"${name}\": ${error instanceof Error ? error.message : String(error)}`,\n        'protocol_error',\n        this.serverName,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * List available resources from the server\n   */\n  async listResources(): Promise<McpResource[]> {\n    const client = this.ensureConnected();\n\n    const result = await client.listResources();\n\n    return result.resources.map((resource) => {\n      const mapped: McpResource = {\n        uri: resource.uri,\n        name: resource.name,\n      };\n      if (resource.description) {\n        mapped.description = resource.description;\n      }\n      if (resource.mimeType) {\n        mapped.mimeType = resource.mimeType;\n      }\n      return mapped;\n    });\n  }\n\n  /**\n   * Read a resource from the server\n   */\n  async readResource(uri: string): Promise<string> {\n    const client = this.ensureConnected();\n\n    const result = await client.readResource({ uri });\n\n    // Return the first text content, or blob as base64\n    for (const content of result.contents) {\n      if ('text' in content) {\n        return content.text;\n      }\n      if ('blob' in content) {\n        return content.blob;\n      }\n    }\n\n    return '';\n  }\n\n  /**\n   * Create the appropriate transport for the server config\n   */\n  private async createTransport(): Promise<Transport> {\n    if (this.config.transport === 'stdio') {\n      return this.createStdioTransport(this.config);\n    }\n\n    // HTTP/SSE transports would be added here\n    throw new McpError(\n      `Unsupported transport type: ${this.config.transport}`,\n      'invalid_config',\n      this.serverName\n    );\n  }\n\n  /**\n   * Create a stdio transport for local MCP servers\n   */\n  private createStdioTransport(config: StdioServerConfig): Transport {\n    const params: {\n      command: string;\n      args?: string[];\n      env?: Record<string, string>;\n      cwd?: string;\n    } = {\n      command: config.command,\n    };\n\n    if (config.args) {\n      params.args = config.args;\n    }\n    if (config.env) {\n      params.env = config.env;\n    }\n    if (config.cwd) {\n      params.cwd = config.cwd;\n    }\n\n    return new StdioClientTransport(params);\n  }\n\n  /**\n   * Parse server capabilities into our format\n   */\n  private parseCapabilities(capabilities?: Record<string, unknown>): McpCapabilities | undefined {\n    if (!capabilities) return undefined;\n\n    return {\n      tools: !!capabilities.tools,\n      resources: !!capabilities.resources,\n      prompts: !!capabilities.prompts,\n      logging: !!capabilities.logging,\n    };\n  }\n\n  /**\n   * Ensure the client is connected and return the client instance\n   */\n  private ensureConnected(): Client {\n    if (!this.client || !this.isConnected()) {\n      throw new McpError(\n        `Not connected to MCP server \"${this.serverName}\"`,\n        'connection_closed',\n        this.serverName\n      );\n    }\n    return this.client;\n  }\n\n  /**\n   * Set server info (for mock/testing purposes)\n   */\n  protected setServerInfo(info: McpServerInfo): void {\n    this._serverInfo = info;\n  }\n}\n\n/**\n * Create a mock MCP client for testing\n */\nexport function createMockMcpClient(\n  serverName: string,\n  tools: McpTool[] = [],\n  resources: McpResource[] = []\n): McpClient {\n  // Create a client with in-memory transport for testing\n  const client = new McpClient(serverName, { transport: 'stdio', command: 'mock' });\n\n  // Store mock data\n  const mockTools = tools;\n  const mockResources = resources;\n\n  // Override connect to set up mock state\n  client.connect = async function (this: McpClient) {\n    const info: McpServerInfo = {\n      name: serverName,\n      version: '1.0.0',\n      connected: true,\n      capabilities: { tools: true, resources: true },\n    };\n    (this as McpClient & { setServerInfo(info: McpServerInfo): void }).setServerInfo(info);\n  };\n\n  client.listTools = async function () {\n    return mockTools;\n  };\n\n  client.listResources = async function () {\n    return mockResources;\n  };\n\n  return client;\n}\n","/**\n * Native GitHub Adapter\n *\n * Implements GitProviderAdapter using the GitHub CLI (gh).\n * Requires the gh CLI to be installed and authenticated.\n */\n\nimport { execFile } from 'child_process';\nimport { promisify } from 'util';\nimport type { GitProviderAdapter } from '../interfaces.js';\nimport type {\n  AdapterInfo,\n  PullRequest,\n  PullRequestQuery,\n  CreatePullRequestData,\n  Review,\n  CreateReviewData,\n  PullRequestStatus,\n  ReviewDecision,\n} from '../types.js';\nimport { AdapterError } from '../types.js';\n\nconst execFileAsync = promisify(execFile);\n\n/**\n * Options for creating a GitHub adapter\n */\nexport interface GitHubAdapterOptions {\n  /**\n   * Repository in owner/repo format\n   */\n  repository: string;\n\n  /**\n   * Path to gh CLI (default: 'gh')\n   */\n  ghPath?: string;\n}\n\n/**\n * Native GitHub adapter using gh CLI\n */\nexport class GitHubAdapter implements GitProviderAdapter {\n  private repository: string;\n  private ghPath: string;\n  private connected = false;\n  private owner: string;\n  private repo: string;\n\n  constructor(options: GitHubAdapterOptions) {\n    this.repository = options.repository;\n    this.ghPath = options.ghPath ?? 'gh';\n\n    const [owner, repo] = this.repository.split('/');\n    if (!owner || !repo) {\n      throw new AdapterError(\n        `Invalid repository format: ${this.repository}. Expected owner/repo`,\n        'invalid_config',\n        this.getInfo()\n      );\n    }\n    this.owner = owner;\n    this.repo = repo;\n  }\n\n  /**\n   * Get adapter info\n   */\n  getInfo(): AdapterInfo {\n    return {\n      type: 'git',\n      provider: 'github',\n      implementation: 'native',\n      connected: this.connected,\n    };\n  }\n\n  /**\n   * Check if connected\n   */\n  isConnected(): boolean {\n    return this.connected;\n  }\n\n  /**\n   * Connect (verify gh CLI is available and authenticated)\n   */\n  async connect(): Promise<void> {\n    try {\n      // Check gh is installed and authenticated\n      await this.gh(['auth', 'status']);\n\n      // Verify we can access the repository\n      await this.gh(['repo', 'view', this.repository, '--json', 'name']);\n\n      this.connected = true;\n    } catch (error) {\n      throw new AdapterError(\n        `Failed to connect to GitHub: ${error instanceof Error ? error.message : String(error)}`,\n        'connection_failed',\n        this.getInfo(),\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Disconnect\n   */\n  async disconnect(): Promise<void> {\n    this.connected = false;\n  }\n\n  /**\n   * Get a pull request by number\n   */\n  async getPullRequest(idOrNumber: string | number): Promise<PullRequest> {\n    this.ensureConnected();\n\n    try {\n      const result = await this.gh([\n        'pr',\n        'view',\n        String(idOrNumber),\n        '-R',\n        this.repository,\n        '--json',\n        'number,title,body,state,author,headRefName,baseRefName,createdAt,updatedAt,mergedAt,url,reviewRequests',\n      ]);\n\n      const data = JSON.parse(result);\n      return this.mapPullRequest(data);\n    } catch (error) {\n      if (this.isNotFoundError(error)) {\n        throw new AdapterError(\n          `Pull request #${idOrNumber} not found`,\n          'not_found',\n          this.getInfo()\n        );\n      }\n      throw this.wrapError(error, `Failed to get pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * List pull requests\n   */\n  async listPullRequests(query?: PullRequestQuery): Promise<PullRequest[]> {\n    this.ensureConnected();\n\n    try {\n      const args = [\n        'pr',\n        'list',\n        '-R',\n        this.repository,\n        '--json',\n        'number,title,body,state,author,headRefName,baseRefName,createdAt,updatedAt,url',\n      ];\n\n      // Map status to gh CLI state\n      if (query?.status) {\n        const states = Array.isArray(query.status) ? query.status : [query.status];\n        const ghStates = states\n          .map((s) => this.mapStatusToGh(s))\n          .filter((s): s is string => s !== undefined);\n        if (ghStates.length > 0 && ghStates[0]) {\n          args.push('--state', ghStates[0]);\n        }\n      }\n\n      if (query?.author) {\n        args.push('--author', query.author);\n      }\n\n      if (query?.limit) {\n        args.push('--limit', String(query.limit));\n      }\n\n      const result = await this.gh(args);\n      const data = JSON.parse(result) as unknown[];\n\n      return data.map((pr) => this.mapPullRequest(pr as Record<string, unknown>));\n    } catch (error) {\n      throw this.wrapError(error, 'Failed to list pull requests');\n    }\n  }\n\n  /**\n   * Create a pull request\n   */\n  async createPullRequest(data: CreatePullRequestData): Promise<PullRequest> {\n    this.ensureConnected();\n\n    try {\n      const args = [\n        'pr',\n        'create',\n        '-R',\n        this.repository,\n        '--head',\n        data.source_branch,\n        '--base',\n        data.target_branch,\n        '--title',\n        data.title,\n      ];\n\n      if (data.description) {\n        args.push('--body', data.description);\n      }\n\n      if (data.draft) {\n        args.push('--draft');\n      }\n\n      if (data.reviewers && data.reviewers.length > 0) {\n        args.push('--reviewer', data.reviewers.join(','));\n      }\n\n      // Create and get the PR details\n      const createResult = await this.gh(args);\n\n      // Parse the URL from the output to get the PR number\n      const urlMatch = createResult.match(/https:\\/\\/github\\.com\\/[^/]+\\/[^/]+\\/pull\\/(\\d+)/);\n      if (urlMatch?.[1]) {\n        return this.getPullRequest(parseInt(urlMatch[1], 10));\n      }\n\n      // Fallback: list to find the just-created PR\n      const prs = await this.listPullRequests({ limit: 1 });\n      const firstPr = prs[0];\n      if (firstPr) {\n        return firstPr;\n      }\n\n      throw new Error('Failed to retrieve created pull request');\n    } catch (error) {\n      throw this.wrapError(error, 'Failed to create pull request');\n    }\n  }\n\n  /**\n   * Update a pull request\n   */\n  async updatePullRequest(\n    idOrNumber: string | number,\n    data: Partial<CreatePullRequestData>\n  ): Promise<PullRequest> {\n    this.ensureConnected();\n\n    try {\n      const args = ['pr', 'edit', String(idOrNumber), '-R', this.repository];\n\n      if (data.title) {\n        args.push('--title', data.title);\n      }\n\n      if (data.description !== undefined) {\n        args.push('--body', data.description);\n      }\n\n      if (data.target_branch) {\n        args.push('--base', data.target_branch);\n      }\n\n      if (data.reviewers && data.reviewers.length > 0) {\n        args.push('--add-reviewer', data.reviewers.join(','));\n      }\n\n      await this.gh(args);\n\n      return this.getPullRequest(idOrNumber);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to update pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Merge a pull request\n   */\n  async mergePullRequest(\n    idOrNumber: string | number,\n    options?: { method?: 'merge' | 'squash' | 'rebase'; message?: string }\n  ): Promise<void> {\n    this.ensureConnected();\n\n    try {\n      const args = ['pr', 'merge', String(idOrNumber), '-R', this.repository];\n\n      const method = options?.method ?? 'merge';\n      args.push(`--${method}`);\n\n      if (options?.message) {\n        args.push('--body', options.message);\n      }\n\n      // Auto-confirm the merge\n      args.push('--delete-branch=false');\n\n      await this.gh(args);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to merge pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Close a pull request\n   */\n  async closePullRequest(idOrNumber: string | number): Promise<void> {\n    this.ensureConnected();\n\n    try {\n      await this.gh(['pr', 'close', String(idOrNumber), '-R', this.repository]);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to close pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Add a review to a pull request\n   */\n  async addReview(idOrNumber: string | number, review: CreateReviewData): Promise<Review> {\n    this.ensureConnected();\n\n    try {\n      const args = ['pr', 'review', String(idOrNumber), '-R', this.repository];\n\n      // Map decision to gh CLI flag\n      switch (review.decision) {\n        case 'approve':\n          args.push('--approve');\n          break;\n        case 'request_changes':\n          args.push('--request-changes');\n          break;\n        case 'comment':\n          args.push('--comment');\n          break;\n      }\n\n      if (review.body) {\n        args.push('--body', review.body);\n      }\n\n      await this.gh(args);\n\n      // Return the review data (gh doesn't return review ID)\n      const reviewResult: Review = {\n        id: `review-${Date.now()}`,\n        pull_request_id: String(idOrNumber),\n        author: 'current-user',\n        decision: review.decision,\n        body: review.body ?? '',\n        created_at: new Date().toISOString(),\n      };\n      return reviewResult;\n    } catch (error) {\n      throw this.wrapError(error, `Failed to add review to pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Get reviews for a pull request\n   */\n  async getReviews(idOrNumber: string | number): Promise<Review[]> {\n    this.ensureConnected();\n\n    try {\n      const result = await this.gh([\n        'pr',\n        'view',\n        String(idOrNumber),\n        '-R',\n        this.repository,\n        '--json',\n        'reviews',\n      ]);\n\n      const data = JSON.parse(result);\n      const reviews = data.reviews || [];\n\n      return reviews.map((r: Record<string, unknown>) => ({\n        id: String(r.id || `review-${Date.now()}`),\n        pull_request_id: String(idOrNumber),\n        author: (r.author as { login?: string })?.login || 'unknown',\n        decision: this.mapGhStateToDecision(String(r.state || 'COMMENTED')),\n        body: String(r.body || ''),\n        created_at: String(r.submittedAt || new Date().toISOString()),\n      }));\n    } catch (error) {\n      throw this.wrapError(error, `Failed to get reviews for pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Request reviewers for a pull request\n   */\n  async requestReviewers(idOrNumber: string | number, reviewers: string[]): Promise<void> {\n    this.ensureConnected();\n\n    try {\n      await this.gh([\n        'pr',\n        'edit',\n        String(idOrNumber),\n        '-R',\n        this.repository,\n        '--add-reviewer',\n        reviewers.join(','),\n      ]);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to request reviewers for pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Add a comment to a pull request\n   */\n  async addPullRequestComment(idOrNumber: string | number, comment: string): Promise<void> {\n    this.ensureConnected();\n\n    try {\n      await this.gh([\n        'pr',\n        'comment',\n        String(idOrNumber),\n        '-R',\n        this.repository,\n        '--body',\n        comment,\n      ]);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to add comment to pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Get the diff for a pull request\n   */\n  async getPullRequestDiff(idOrNumber: string | number): Promise<string> {\n    this.ensureConnected();\n\n    try {\n      return await this.gh(['pr', 'diff', String(idOrNumber), '-R', this.repository]);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to get diff for pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Get files changed in a pull request\n   */\n  async getPullRequestFiles(idOrNumber: string | number): Promise<string[]> {\n    this.ensureConnected();\n\n    try {\n      const result = await this.gh([\n        'pr',\n        'view',\n        String(idOrNumber),\n        '-R',\n        this.repository,\n        '--json',\n        'files',\n      ]);\n\n      const data = JSON.parse(result);\n      const files = data.files || [];\n\n      return files.map((f: { path?: string }) => f.path || '');\n    } catch (error) {\n      throw this.wrapError(error, `Failed to get files for pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Execute gh CLI command\n   */\n  private async gh(args: string[]): Promise<string> {\n    try {\n      const { stdout } = await execFileAsync(this.ghPath, args, {\n        maxBuffer: 10 * 1024 * 1024, // 10MB\n      });\n      return stdout;\n    } catch (error) {\n      const execError = error as { stderr?: string; message?: string };\n      throw new Error(execError.stderr || execError.message || 'Unknown gh error');\n    }\n  }\n\n  /**\n   * Ensure adapter is connected\n   */\n  private ensureConnected(): void {\n    if (!this.connected) {\n      throw new AdapterError(\n        'GitHub adapter is not connected. Call connect() first.',\n        'not_connected',\n        this.getInfo()\n      );\n    }\n  }\n\n  /**\n   * Map gh PR data to PullRequest type\n   */\n  private mapPullRequest(data: Record<string, unknown>): PullRequest {\n    const pr: PullRequest = {\n      id: String(data.number),\n      number: Number(data.number),\n      title: String(data.title || ''),\n      source_branch: String(data.headRefName || ''),\n      target_branch: String(data.baseRefName || ''),\n      status: this.mapGhStateToPrStatus(String(data.state || 'OPEN')),\n    };\n\n    if (data.body) {\n      pr.description = String(data.body);\n    }\n\n    if (data.author && typeof data.author === 'object') {\n      const login = (data.author as { login?: string }).login;\n      if (login) {\n        pr.author = login;\n      }\n    }\n\n    if (data.createdAt) {\n      pr.created_at = String(data.createdAt);\n    }\n\n    if (data.updatedAt) {\n      pr.updated_at = String(data.updatedAt);\n    }\n\n    if (data.mergedAt) {\n      pr.merged_at = String(data.mergedAt);\n    }\n\n    if (data.url) {\n      pr.url = String(data.url);\n    }\n\n    if (data.reviewRequests && Array.isArray(data.reviewRequests)) {\n      pr.reviewers = data.reviewRequests\n        .map((r: { login?: string }) => r.login || '')\n        .filter(Boolean);\n    }\n\n    return pr;\n  }\n\n  /**\n   * Map gh state to PullRequestStatus\n   */\n  private mapGhStateToPrStatus(state: string): PullRequestStatus {\n    switch (state.toUpperCase()) {\n      case 'OPEN':\n        return 'open';\n      case 'CLOSED':\n        return 'closed';\n      case 'MERGED':\n        return 'merged';\n      default:\n        return 'open';\n    }\n  }\n\n  /**\n   * Map PullRequestStatus to gh CLI state\n   */\n  private mapStatusToGh(status: PullRequestStatus): string | undefined {\n    switch (status) {\n      case 'open':\n        return 'open';\n      case 'closed':\n        return 'closed';\n      case 'merged':\n        return 'merged';\n      default:\n        return undefined;\n    }\n  }\n\n  /**\n   * Map gh review state to ReviewDecision\n   */\n  private mapGhStateToDecision(state: string): ReviewDecision {\n    switch (state.toUpperCase()) {\n      case 'APPROVED':\n        return 'approve';\n      case 'CHANGES_REQUESTED':\n        return 'request_changes';\n      case 'COMMENTED':\n      default:\n        return 'comment';\n    }\n  }\n\n  /**\n   * Check if error is a not found error\n   */\n  private isNotFoundError(error: unknown): boolean {\n    const message = error instanceof Error ? error.message : String(error);\n    return message.includes('Could not resolve') || message.includes('not found');\n  }\n\n  /**\n   * Wrap error in AdapterError\n   */\n  private wrapError(error: unknown, message: string): AdapterError {\n    return new AdapterError(\n      `${message}: ${error instanceof Error ? error.message : String(error)}`,\n      'operation_failed',\n      this.getInfo(),\n      error instanceof Error ? error : undefined\n    );\n  }\n}\n\n/**\n * Create a GitHub adapter\n */\nexport function createGitHubAdapter(options: GitHubAdapterOptions): GitHubAdapter {\n  return new GitHubAdapter(options);\n}\n","/**\n * Cache Types\n *\n * Type definitions for the shared context cache system.\n */\n\n/**\n * Source type for cached content\n */\nexport type CacheSource = 'confluence' | 'github' | 'notion' | 'local' | 'custom';\n\n/**\n * Cache entry status\n */\nexport type CacheStatus = 'valid' | 'stale' | 'expired' | 'error';\n\n/**\n * Metadata for a cached entry\n */\nexport interface CacheMetadata {\n  /**\n   * Unique key for this cache entry\n   */\n  key: string;\n\n  /**\n   * Source provider (e.g., 'confluence', 'github')\n   */\n  source: CacheSource;\n\n  /**\n   * Original source URL or identifier\n   */\n  sourceUrl: string;\n\n  /**\n   * When the content was cached\n   */\n  cachedAt: string;\n\n  /**\n   * When the content expires (ISO date string)\n   */\n  expiresAt: string;\n\n  /**\n   * ETag or version hash from source (for conditional fetching)\n   */\n  etag?: string;\n\n  /**\n   * Content hash for integrity checking\n   */\n  contentHash: string;\n\n  /**\n   * Size in bytes\n   */\n  size: number;\n\n  /**\n   * Content type (e.g., 'text/markdown', 'application/json')\n   */\n  contentType: string;\n\n  /**\n   * Original title or name\n   */\n  title?: string;\n\n  /**\n   * Last modified timestamp from source\n   */\n  lastModified?: string;\n\n  /**\n   * Custom tags for categorization\n   */\n  tags?: string[];\n}\n\n/**\n * A cached content entry\n */\nexport interface CacheEntry<T = string> {\n  /**\n   * Entry metadata\n   */\n  metadata: CacheMetadata;\n\n  /**\n   * The cached content\n   */\n  content: T;\n}\n\n/**\n * Options for cache operations\n */\nexport interface CacheOptions {\n  /**\n   * Time-to-live in seconds (default: 3600 = 1 hour)\n   */\n  ttl?: number;\n\n  /**\n   * Force refresh even if cached\n   */\n  forceRefresh?: boolean;\n\n  /**\n   * Skip cache and fetch directly\n   */\n  skipCache?: boolean;\n\n  /**\n   * Custom tags to apply\n   */\n  tags?: string[];\n}\n\n/**\n * Options for listing cache entries\n */\nexport interface CacheListOptions {\n  /**\n   * Filter by source\n   */\n  source?: CacheSource;\n\n  /**\n   * Filter by tag\n   */\n  tag?: string;\n\n  /**\n   * Filter by status\n   */\n  status?: CacheStatus;\n\n  /**\n   * Maximum entries to return\n   */\n  limit?: number;\n}\n\n/**\n * Cache statistics\n */\nexport interface CacheStats {\n  /**\n   * Total number of entries\n   */\n  totalEntries: number;\n\n  /**\n   * Total size in bytes\n   */\n  totalSize: number;\n\n  /**\n   * Number of valid entries\n   */\n  validEntries: number;\n\n  /**\n   * Number of stale entries\n   */\n  staleEntries: number;\n\n  /**\n   * Number of expired entries\n   */\n  expiredEntries: number;\n\n  /**\n   * Entries by source\n   */\n  bySource: Record<CacheSource, number>;\n\n  /**\n   * Oldest entry timestamp\n   */\n  oldestEntry?: string;\n\n  /**\n   * Newest entry timestamp\n   */\n  newestEntry?: string;\n}\n\n/**\n * Result of a sync operation\n */\nexport interface SyncResult {\n  /**\n   * Number of entries added\n   */\n  added: number;\n\n  /**\n   * Number of entries updated\n   */\n  updated: number;\n\n  /**\n   * Number of entries removed\n   */\n  removed: number;\n\n  /**\n   * Number of entries that failed to sync\n   */\n  failed: number;\n\n  /**\n   * Error messages for failed entries\n   */\n  errors: { key: string; error: string }[];\n\n  /**\n   * Duration of sync in milliseconds\n   */\n  duration: number;\n}\n\n/**\n * Cache error codes\n */\nexport type CacheErrorCode =\n  | 'not_found'\n  | 'expired'\n  | 'invalid_key'\n  | 'write_failed'\n  | 'read_failed'\n  | 'fetch_failed'\n  | 'invalid_config'\n  | 'storage_full';\n\n/**\n * Cache-specific error\n */\nexport class CacheError extends Error {\n  constructor(\n    message: string,\n    public readonly code: CacheErrorCode,\n    public readonly key?: string,\n    public override readonly cause?: Error\n  ) {\n    super(message);\n    this.name = 'CacheError';\n  }\n}\n\n/**\n * Default cache directory paths\n */\nexport const CACHE_PATHS = {\n  /**\n   * Root cache directory (relative to project root)\n   */\n  ROOT: '.coreai/cache',\n\n  /**\n   * Content storage directory\n   */\n  CONTENT: '.coreai/cache/content',\n\n  /**\n   * Metadata storage directory\n   */\n  METADATA: '.coreai/cache/metadata',\n\n  /**\n   * Index file for fast lookups\n   */\n  INDEX: '.coreai/cache/index.json',\n\n  /**\n   * Lock file for concurrent access\n   */\n  LOCK: '.coreai/cache/.lock',\n} as const;\n\n/**\n * Default cache configuration\n */\nexport const DEFAULT_CACHE_CONFIG = {\n  /**\n   * Default TTL in seconds (1 hour)\n   */\n  ttl: 3600,\n\n  /**\n   * Maximum cache size in bytes (100MB)\n   */\n  maxSize: 100 * 1024 * 1024,\n\n  /**\n   * Maximum number of entries\n   */\n  maxEntries: 1000,\n\n  /**\n   * Enable automatic cleanup of expired entries\n   */\n  autoCleanup: true,\n\n  /**\n   * Cleanup interval in seconds (1 hour)\n   */\n  cleanupInterval: 3600,\n} as const;\n","/**\n * File-based Cache Provider\n *\n * Implements CacheProvider using the local filesystem.\n * Stores content in files with separate metadata JSON files.\n */\n\nimport { promises as fs } from 'fs';\nimport { join, dirname } from 'path';\nimport { createHash } from 'crypto';\nimport type {\n  CacheEntry,\n  CacheMetadata,\n  CacheOptions,\n  CacheListOptions,\n  CacheStats,\n  CacheStatus,\n  CacheSource,\n} from './types.js';\nimport { CacheError, CACHE_PATHS, DEFAULT_CACHE_CONFIG } from './types.js';\nimport type { CacheProvider } from './interfaces.js';\n\n/**\n * No-op function for ignoring errors\n */\nfunction noop(): void {\n  // Intentionally empty\n}\n\n/**\n * Options for creating a file cache provider\n */\nexport interface FileCacheProviderOptions {\n  /**\n   * Base path for cache storage (project root)\n   */\n  basePath: string;\n\n  /**\n   * Default TTL in seconds\n   */\n  ttl?: number;\n\n  /**\n   * Maximum cache size in bytes\n   */\n  maxSize?: number;\n\n  /**\n   * Maximum number of entries\n   */\n  maxEntries?: number;\n}\n\n/**\n * Cache index structure for fast lookups\n */\ninterface CacheIndex {\n  version: number;\n  entries: Record<string, CacheIndexEntry>;\n  stats: {\n    totalSize: number;\n    entryCount: number;\n    lastCleanup: string | null;\n  };\n}\n\n/**\n * Index entry for quick access\n */\ninterface CacheIndexEntry {\n  key: string;\n  source: CacheSource;\n  cachedAt: string;\n  expiresAt: string;\n  size: number;\n  contentFile: string;\n  metadataFile: string;\n}\n\nconst INDEX_VERSION = 1;\n\n/**\n * File-based cache provider implementation\n */\nexport class FileCacheProvider implements CacheProvider {\n  private basePath: string;\n  private cachePath: string;\n  private contentPath: string;\n  private metadataPath: string;\n  private indexPath: string;\n  private ttl: number;\n  private maxSize: number;\n  private maxEntries: number;\n  private initialized = false;\n  private index: CacheIndex | null = null;\n\n  constructor(options: FileCacheProviderOptions) {\n    this.basePath = options.basePath;\n    this.cachePath = join(this.basePath, CACHE_PATHS.ROOT);\n    this.contentPath = join(this.basePath, CACHE_PATHS.CONTENT);\n    this.metadataPath = join(this.basePath, CACHE_PATHS.METADATA);\n    this.indexPath = join(this.basePath, CACHE_PATHS.INDEX);\n    this.ttl = options.ttl ?? DEFAULT_CACHE_CONFIG.ttl;\n    this.maxSize = options.maxSize ?? DEFAULT_CACHE_CONFIG.maxSize;\n    this.maxEntries = options.maxEntries ?? DEFAULT_CACHE_CONFIG.maxEntries;\n  }\n\n  /**\n   * Initialize the cache (create directories, load index)\n   */\n  async initialize(): Promise<void> {\n    if (this.initialized) return;\n\n    try {\n      // Create cache directories\n      await fs.mkdir(this.contentPath, { recursive: true });\n      await fs.mkdir(this.metadataPath, { recursive: true });\n\n      // Load or create index\n      this.index = await this.loadIndex();\n\n      // Save index to ensure file exists\n      await this.saveIndex();\n\n      this.initialized = true;\n    } catch (error) {\n      throw new CacheError(\n        `Failed to initialize cache: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        undefined,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Check if the cache is initialized\n   */\n  isInitialized(): boolean {\n    return this.initialized;\n  }\n\n  /**\n   * Get a cached entry by key\n   */\n  async get<T = string>(key: string, options?: CacheOptions): Promise<CacheEntry<T> | null> {\n    this.ensureInitialized();\n\n    if (options?.skipCache) {\n      return null;\n    }\n\n    const indexEntry = this.index?.entries[key];\n    if (!indexEntry) {\n      return null;\n    }\n\n    // Check expiration (unless force refresh)\n    if (!options?.forceRefresh) {\n      const status = this.getEntryStatus(indexEntry);\n      if (status === 'expired') {\n        return null;\n      }\n    }\n\n    try {\n      // Read metadata\n      const metadataContent = await fs.readFile(indexEntry.metadataFile, 'utf-8');\n      const metadata: CacheMetadata = JSON.parse(metadataContent);\n\n      // Read content\n      const contentRaw = await fs.readFile(indexEntry.contentFile, 'utf-8');\n      let content: T;\n\n      // Try to parse as JSON if content type indicates it\n      if (metadata.contentType.includes('json')) {\n        content = JSON.parse(contentRaw) as T;\n      } else {\n        content = contentRaw as T;\n      }\n\n      return { metadata, content };\n    } catch {\n      // Entry exists in index but files are missing - clean up\n      await this.delete(key);\n      return null;\n    }\n  }\n\n  /**\n   * Get the content only (convenience method)\n   */\n  async getContent<T = string>(key: string, options?: CacheOptions): Promise<T | null> {\n    const entry = await this.get<T>(key, options);\n    return entry?.content ?? null;\n  }\n\n  /**\n   * Set a cache entry\n   */\n  async set<T = string>(\n    key: string,\n    content: T,\n    metadata: Partial<CacheMetadata>,\n    options?: CacheOptions\n  ): Promise<void> {\n    this.ensureInitialized();\n\n    const now = new Date();\n    const ttl = options?.ttl ?? this.ttl;\n    const expiresAt = new Date(now.getTime() + ttl * 1000);\n\n    // Serialize content\n    const contentStr = typeof content === 'string' ? content : JSON.stringify(content, null, 2);\n    const contentHash = this.hashContent(contentStr);\n    const size = Buffer.byteLength(contentStr, 'utf-8');\n\n    // Generate file paths\n    const safeKey = this.sanitizeKey(key);\n    const contentFile = join(this.contentPath, `${safeKey}.cache`);\n    const metadataFile = join(this.metadataPath, `${safeKey}.json`);\n\n    // Build full metadata\n    const fullMetadata: CacheMetadata = {\n      key,\n      source: metadata.source ?? 'custom',\n      sourceUrl: metadata.sourceUrl ?? '',\n      cachedAt: now.toISOString(),\n      expiresAt: expiresAt.toISOString(),\n      contentHash,\n      size,\n      contentType:\n        metadata.contentType ?? (typeof content === 'string' ? 'text/plain' : 'application/json'),\n    };\n    // Conditionally add optional properties\n    if (metadata.etag) {\n      fullMetadata.etag = metadata.etag;\n    }\n    if (metadata.title) {\n      fullMetadata.title = metadata.title;\n    }\n    if (metadata.lastModified) {\n      fullMetadata.lastModified = metadata.lastModified;\n    }\n    const tags = options?.tags ?? metadata.tags;\n    if (tags) {\n      fullMetadata.tags = tags;\n    }\n\n    try {\n      // Ensure directories exist\n      await fs.mkdir(dirname(contentFile), { recursive: true });\n      await fs.mkdir(dirname(metadataFile), { recursive: true });\n\n      // Write files\n      await fs.writeFile(contentFile, contentStr, 'utf-8');\n      await fs.writeFile(metadataFile, JSON.stringify(fullMetadata, null, 2), 'utf-8');\n\n      // Update index\n      if (this.index) {\n        // Remove old size from stats if updating\n        const oldEntry = this.index.entries[key];\n        if (oldEntry) {\n          this.index.stats.totalSize -= oldEntry.size;\n        } else {\n          this.index.stats.entryCount++;\n        }\n\n        this.index.entries[key] = {\n          key,\n          source: fullMetadata.source,\n          cachedAt: fullMetadata.cachedAt,\n          expiresAt: fullMetadata.expiresAt,\n          size,\n          contentFile,\n          metadataFile,\n        };\n        this.index.stats.totalSize += size;\n\n        await this.saveIndex();\n      }\n    } catch (error) {\n      throw new CacheError(\n        `Failed to write cache entry: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        key,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Check if a key exists in the cache\n   */\n  async has(key: string): Promise<boolean> {\n    this.ensureInitialized();\n    return key in (this.index?.entries ?? {});\n  }\n\n  /**\n   * Delete a cache entry\n   */\n  async delete(key: string): Promise<boolean> {\n    this.ensureInitialized();\n\n    const indexEntry = this.index?.entries[key];\n    if (!indexEntry) {\n      return false;\n    }\n\n    try {\n      // Delete files (ignore if already missing)\n      await fs.unlink(indexEntry.contentFile).catch(noop);\n      await fs.unlink(indexEntry.metadataFile).catch(noop);\n\n      // Update index\n      if (this.index) {\n        this.index.stats.totalSize -= indexEntry.size;\n        this.index.stats.entryCount--;\n        // Remove entry from index using destructuring\n        const { [key]: _removed, ...remaining } = this.index.entries;\n        this.index.entries = remaining;\n        await this.saveIndex();\n      }\n\n      return true;\n    } catch (error) {\n      throw new CacheError(\n        `Failed to delete cache entry: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        key,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Get the status of a cache entry\n   */\n  async getStatus(key: string): Promise<CacheStatus | null> {\n    this.ensureInitialized();\n\n    const indexEntry = this.index?.entries[key];\n    if (!indexEntry) {\n      return null;\n    }\n\n    return this.getEntryStatus(indexEntry);\n  }\n\n  /**\n   * Get metadata for a cache entry\n   */\n  async getMetadata(key: string): Promise<CacheMetadata | null> {\n    this.ensureInitialized();\n\n    const indexEntry = this.index?.entries[key];\n    if (!indexEntry) {\n      return null;\n    }\n\n    try {\n      const content = await fs.readFile(indexEntry.metadataFile, 'utf-8');\n      return JSON.parse(content);\n    } catch {\n      return null;\n    }\n  }\n\n  /**\n   * Update metadata for a cache entry\n   */\n  async updateMetadata(key: string, metadata: Partial<CacheMetadata>): Promise<void> {\n    this.ensureInitialized();\n\n    const existing = await this.getMetadata(key);\n    if (!existing) {\n      throw new CacheError(`Cache entry not found: ${key}`, 'not_found', key);\n    }\n\n    const indexEntry = this.index?.entries[key];\n    if (!indexEntry) {\n      throw new CacheError(`Cache entry not found: ${key}`, 'not_found', key);\n    }\n\n    const updated: CacheMetadata = {\n      ...existing,\n      ...metadata,\n      key: existing.key, // Can't change key\n    };\n\n    try {\n      await fs.writeFile(indexEntry.metadataFile, JSON.stringify(updated, null, 2), 'utf-8');\n\n      // Update index if relevant fields changed\n      if (this.index && indexEntry) {\n        if (metadata.source) indexEntry.source = metadata.source;\n        if (metadata.expiresAt) indexEntry.expiresAt = metadata.expiresAt;\n        await this.saveIndex();\n      }\n    } catch (error) {\n      throw new CacheError(\n        `Failed to update metadata: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        key,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * List cache entries\n   */\n  async list(options?: CacheListOptions): Promise<CacheMetadata[]> {\n    this.ensureInitialized();\n\n    if (!this.index) return [];\n\n    let entries = Object.values(this.index.entries);\n\n    // Apply filters\n    if (options?.source) {\n      entries = entries.filter((e) => e.source === options.source);\n    }\n\n    if (options?.status) {\n      entries = entries.filter((e) => this.getEntryStatus(e) === options.status);\n    }\n\n    // Load full metadata for tag filtering and return\n    const metadataPromises = entries.map(async (e) => {\n      const metadata = await this.getMetadata(e.key);\n      return metadata;\n    });\n\n    let results = (await Promise.all(metadataPromises)).filter(\n      (m): m is CacheMetadata => m !== null\n    );\n\n    // Filter by tag if specified\n    if (options?.tag) {\n      const tag = options.tag;\n      results = results.filter((m) => m.tags?.includes(tag));\n    }\n\n    // Apply limit\n    if (options?.limit && results.length > options.limit) {\n      results = results.slice(0, options.limit);\n    }\n\n    return results;\n  }\n\n  /**\n   * Get cache statistics\n   */\n  async getStats(): Promise<CacheStats> {\n    this.ensureInitialized();\n\n    if (!this.index) {\n      return {\n        totalEntries: 0,\n        totalSize: 0,\n        validEntries: 0,\n        staleEntries: 0,\n        expiredEntries: 0,\n        bySource: {\n          confluence: 0,\n          github: 0,\n          notion: 0,\n          local: 0,\n          custom: 0,\n        },\n      };\n    }\n\n    const entries = Object.values(this.index.entries);\n    const bySource: Record<CacheSource, number> = {\n      confluence: 0,\n      github: 0,\n      notion: 0,\n      local: 0,\n      custom: 0,\n    };\n\n    let validEntries = 0;\n    let staleEntries = 0;\n    let expiredEntries = 0;\n    let oldestEntry: string | undefined;\n    let newestEntry: string | undefined;\n\n    for (const entry of entries) {\n      bySource[entry.source]++;\n\n      const status = this.getEntryStatus(entry);\n      if (status === 'valid') validEntries++;\n      else if (status === 'stale') staleEntries++;\n      else if (status === 'expired') expiredEntries++;\n\n      if (!oldestEntry || entry.cachedAt < oldestEntry) {\n        oldestEntry = entry.cachedAt;\n      }\n      if (!newestEntry || entry.cachedAt > newestEntry) {\n        newestEntry = entry.cachedAt;\n      }\n    }\n\n    const stats: CacheStats = {\n      totalEntries: this.index.stats.entryCount,\n      totalSize: this.index.stats.totalSize,\n      validEntries,\n      staleEntries,\n      expiredEntries,\n      bySource,\n    };\n\n    if (oldestEntry) stats.oldestEntry = oldestEntry;\n    if (newestEntry) stats.newestEntry = newestEntry;\n\n    return stats;\n  }\n\n  /**\n   * Clear all cache entries\n   */\n  async clear(): Promise<number> {\n    this.ensureInitialized();\n\n    if (!this.index) return 0;\n\n    const count = this.index.stats.entryCount;\n\n    try {\n      // Delete all content and metadata files\n      await fs.rm(this.contentPath, { recursive: true, force: true });\n      await fs.rm(this.metadataPath, { recursive: true, force: true });\n\n      // Recreate directories\n      await fs.mkdir(this.contentPath, { recursive: true });\n      await fs.mkdir(this.metadataPath, { recursive: true });\n\n      // Reset index\n      this.index = this.createEmptyIndex();\n      await this.saveIndex();\n\n      return count;\n    } catch (error) {\n      throw new CacheError(\n        `Failed to clear cache: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        undefined,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Clear expired entries only\n   */\n  async clearExpired(): Promise<number> {\n    this.ensureInitialized();\n\n    if (!this.index) return 0;\n\n    const expiredKeys = Object.entries(this.index.entries)\n      .filter(([, entry]) => this.getEntryStatus(entry) === 'expired')\n      .map(([key]) => key);\n\n    for (const key of expiredKeys) {\n      await this.delete(key);\n    }\n\n    if (this.index) {\n      this.index.stats.lastCleanup = new Date().toISOString();\n      await this.saveIndex();\n    }\n\n    return expiredKeys.length;\n  }\n\n  /**\n   * Clear entries by source\n   */\n  async clearBySource(source: string): Promise<number> {\n    this.ensureInitialized();\n\n    if (!this.index) return 0;\n\n    const keys = Object.entries(this.index.entries)\n      .filter(([, entry]) => entry.source === source)\n      .map(([key]) => key);\n\n    for (const key of keys) {\n      await this.delete(key);\n    }\n\n    return keys.length;\n  }\n\n  /**\n   * Clear entries by tag\n   */\n  async clearByTag(tag: string): Promise<number> {\n    this.ensureInitialized();\n\n    const entries = await this.list({ tag });\n    for (const entry of entries) {\n      await this.delete(entry.key);\n    }\n\n    return entries.length;\n  }\n\n  // Private helpers\n\n  private ensureInitialized(): void {\n    if (!this.initialized) {\n      throw new CacheError('Cache not initialized. Call initialize() first.', 'invalid_config');\n    }\n  }\n\n  private async loadIndex(): Promise<CacheIndex> {\n    try {\n      const content = await fs.readFile(this.indexPath, 'utf-8');\n      const index = JSON.parse(content) as CacheIndex;\n\n      // Validate version\n      if (index.version !== INDEX_VERSION) {\n        // Index version mismatch - rebuild\n        return this.rebuildIndex();\n      }\n\n      return index;\n    } catch {\n      // Index doesn't exist or is invalid - create new one\n      return this.createEmptyIndex();\n    }\n  }\n\n  private async saveIndex(): Promise<void> {\n    if (!this.index) return;\n\n    try {\n      await fs.writeFile(this.indexPath, JSON.stringify(this.index, null, 2), 'utf-8');\n    } catch (error) {\n      throw new CacheError(\n        `Failed to save cache index: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        undefined,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  private createEmptyIndex(): CacheIndex {\n    return {\n      version: INDEX_VERSION,\n      entries: {},\n      stats: {\n        totalSize: 0,\n        entryCount: 0,\n        lastCleanup: null,\n      },\n    };\n  }\n\n  private async rebuildIndex(): Promise<CacheIndex> {\n    const index = this.createEmptyIndex();\n\n    try {\n      const metadataFiles = await fs.readdir(this.metadataPath);\n\n      for (const file of metadataFiles) {\n        if (!file.endsWith('.json')) continue;\n\n        try {\n          const metadataPath = join(this.metadataPath, file);\n          const content = await fs.readFile(metadataPath, 'utf-8');\n          const metadata: CacheMetadata = JSON.parse(content);\n\n          const safeKey = this.sanitizeKey(metadata.key);\n          const contentFile = join(this.contentPath, `${safeKey}.cache`);\n\n          // Verify content file exists\n          await fs.access(contentFile);\n\n          index.entries[metadata.key] = {\n            key: metadata.key,\n            source: metadata.source,\n            cachedAt: metadata.cachedAt,\n            expiresAt: metadata.expiresAt,\n            size: metadata.size,\n            contentFile,\n            metadataFile: metadataPath,\n          };\n\n          index.stats.totalSize += metadata.size;\n          index.stats.entryCount++;\n        } catch {\n          // Skip invalid entries\n        }\n      }\n    } catch {\n      // Metadata directory doesn't exist or is empty\n    }\n\n    return index;\n  }\n\n  private getEntryStatus(entry: CacheIndexEntry): CacheStatus {\n    const now = new Date();\n    const expiresAt = new Date(entry.expiresAt);\n    const cachedAt = new Date(entry.cachedAt);\n\n    if (now > expiresAt) {\n      return 'expired';\n    }\n\n    // Consider stale if more than 80% of TTL has passed\n    const totalTtl = expiresAt.getTime() - cachedAt.getTime();\n    const elapsed = now.getTime() - cachedAt.getTime();\n    if (elapsed > totalTtl * 0.8) {\n      return 'stale';\n    }\n\n    return 'valid';\n  }\n\n  private sanitizeKey(key: string): string {\n    // Create a safe filename from the key\n    return createHash('sha256').update(key).digest('hex').substring(0, 32);\n  }\n\n  private hashContent(content: string): string {\n    return createHash('sha256').update(content).digest('hex');\n  }\n}\n\n/**\n * Create a file cache provider\n */\nexport function createFileCacheProvider(options: FileCacheProviderOptions): FileCacheProvider {\n  return new FileCacheProvider(options);\n}\n","/**\n * Cache Manager\n *\n * Higher-level cache management that combines caching with remote fetching.\n * Implements cache-first resolution with remote fallback strategy.\n */\n\nimport type { CacheEntry, CacheMetadata, CacheOptions, CacheSource, SyncResult } from './types.js';\nimport { CacheError } from './types.js';\nimport type {\n  CacheProvider,\n  CacheManager as ICacheManager,\n  RemoteFetcher,\n  FetchOptions,\n  SyncOptions,\n} from './interfaces.js';\n\n/**\n * Options for creating a cache manager\n */\nexport interface CacheManagerOptions {\n  /**\n   * The underlying cache provider\n   */\n  cache: CacheProvider;\n\n  /**\n   * Default TTL in seconds\n   */\n  defaultTtl?: number;\n\n  /**\n   * Default source for new entries\n   */\n  defaultSource?: CacheSource;\n}\n\n/**\n * Cache manager implementation\n *\n * Provides cache-first resolution strategy:\n * 1. Check cache for valid entry\n * 2. If cached and valid, return cached content\n * 3. If stale or missing, fetch from remote\n * 4. Cache the fetched content\n * 5. Return the content\n */\nexport class CacheManager implements ICacheManager {\n  private cache: CacheProvider;\n  private fetchers = new Map<string, RemoteFetcher>();\n  private defaultTtl: number;\n  private defaultSource: CacheSource;\n\n  constructor(options: CacheManagerOptions) {\n    this.cache = options.cache;\n    this.defaultTtl = options.defaultTtl ?? 3600;\n    this.defaultSource = options.defaultSource ?? 'custom';\n  }\n\n  /**\n   * Get content with cache-first strategy\n   */\n  async getWithFallback<T = string>(\n    key: string,\n    url: string,\n    options?: CacheOptions & FetchOptions\n  ): Promise<CacheEntry<T>> {\n    // Try cache first (unless skipCache is set)\n    if (!options?.skipCache && !options?.forceRefresh) {\n      const cached = await this.cache.get<T>(key);\n      if (cached) {\n        const status = await this.cache.getStatus(key);\n        // Return if valid (not stale or expired)\n        if (status === 'valid') {\n          return cached;\n        }\n        // If stale, try to refresh but fall back to stale if fetch fails\n        if (status === 'stale') {\n          try {\n            return await this.fetchAndCache<T>(key, url, options);\n          } catch {\n            // Return stale content on fetch failure\n            return cached;\n          }\n        }\n      }\n    }\n\n    // Cache miss or forceRefresh - fetch from remote\n    return this.fetchAndCache<T>(key, url, options);\n  }\n\n  /**\n   * Sync all entries from a source\n   */\n  async syncSource(source: string, options?: SyncOptions): Promise<SyncResult> {\n    const startTime = Date.now();\n    const result: SyncResult = {\n      added: 0,\n      updated: 0,\n      removed: 0,\n      failed: 0,\n      errors: [],\n      duration: 0,\n    };\n\n    // Get all entries from this source\n    const entries = await this.cache.list({ source: source as CacheSource });\n\n    // Sync each entry\n    const concurrency = options?.concurrency ?? 5;\n    const chunks = this.chunkArray(entries, concurrency);\n\n    for (const chunk of chunks) {\n      const promises = chunk.map(async (entry) => {\n        try {\n          const fetcher = this.fetchers.get(source);\n          if (!fetcher) {\n            throw new Error(`No fetcher registered for source: ${source}`);\n          }\n\n          // Check if content has changed\n          const hasChanged = await fetcher.hasChanged(entry.sourceUrl, entry.etag);\n\n          if (hasChanged || options?.force) {\n            // Fetch and update\n            const fetchOptions: FetchOptions = {};\n            if (entry.etag) {\n              fetchOptions.etag = entry.etag;\n            }\n            const { content, metadata } = await fetcher.fetch(entry.sourceUrl, fetchOptions);\n\n            await this.cache.set(entry.key, content, {\n              ...entry,\n              ...metadata,\n            });\n\n            result.updated++;\n          }\n        } catch (error) {\n          result.failed++;\n          result.errors.push({\n            key: entry.key,\n            error: error instanceof Error ? error.message : String(error),\n          });\n\n          if (!options?.continueOnError) {\n            throw error;\n          }\n        }\n      });\n\n      await Promise.all(promises);\n    }\n\n    // Report final progress\n    if (options?.onProgress) {\n      options.onProgress(entries.length, entries.length);\n    }\n\n    result.duration = Date.now() - startTime;\n    return result;\n  }\n\n  /**\n   * Sync specific entries\n   */\n  async syncEntries(keys: string[], options?: SyncOptions): Promise<SyncResult> {\n    const startTime = Date.now();\n    const result: SyncResult = {\n      added: 0,\n      updated: 0,\n      removed: 0,\n      failed: 0,\n      errors: [],\n      duration: 0,\n    };\n\n    const concurrency = options?.concurrency ?? 5;\n    const chunks = this.chunkArray(keys, concurrency);\n\n    for (const chunk of chunks) {\n      const promises = chunk.map(async (key) => {\n        try {\n          const metadata = await this.cache.getMetadata(key);\n          if (!metadata) {\n            result.failed++;\n            result.errors.push({ key, error: 'Entry not found in cache' });\n            return;\n          }\n\n          const fetcher = this.fetchers.get(metadata.source);\n          if (!fetcher) {\n            result.failed++;\n            result.errors.push({ key, error: `No fetcher for source: ${metadata.source}` });\n            return;\n          }\n\n          // Check if content has changed\n          const hasChanged = await fetcher.hasChanged(metadata.sourceUrl, metadata.etag);\n\n          if (hasChanged || options?.force) {\n            const fetchOpts: FetchOptions = {};\n            if (metadata.etag) {\n              fetchOpts.etag = metadata.etag;\n            }\n            const { content, metadata: newMeta } = await fetcher.fetch(\n              metadata.sourceUrl,\n              fetchOpts\n            );\n\n            await this.cache.set(key, content, {\n              ...metadata,\n              ...newMeta,\n            });\n\n            result.updated++;\n          }\n        } catch (error) {\n          result.failed++;\n          result.errors.push({\n            key,\n            error: error instanceof Error ? error.message : String(error),\n          });\n\n          if (!options?.continueOnError) {\n            throw error;\n          }\n        }\n      });\n\n      await Promise.all(promises);\n    }\n\n    // Report final progress\n    if (options?.onProgress) {\n      options.onProgress(keys.length, keys.length);\n    }\n\n    result.duration = Date.now() - startTime;\n    return result;\n  }\n\n  /**\n   * Register a fetcher for a source\n   */\n  registerFetcher(source: string, fetcher: RemoteFetcher): void {\n    this.fetchers.set(source, fetcher);\n  }\n\n  /**\n   * Get the underlying cache provider\n   */\n  getCache(): CacheProvider {\n    return this.cache;\n  }\n\n  /**\n   * Check if a fetcher is registered for a source\n   */\n  hasFetcher(source: string): boolean {\n    return this.fetchers.has(source);\n  }\n\n  /**\n   * Get all registered sources\n   */\n  getRegisteredSources(): string[] {\n    return Array.from(this.fetchers.keys());\n  }\n\n  // Private helpers\n\n  private async fetchAndCache<T>(\n    key: string,\n    url: string,\n    options?: CacheOptions & FetchOptions\n  ): Promise<CacheEntry<T>> {\n    // Determine source from URL\n    const source = this.getSourceFromUrl(url);\n    const fetcher = this.fetchers.get(source);\n\n    if (!fetcher) {\n      throw new CacheError(\n        `No fetcher registered for source: ${source}. Register one with registerFetcher().`,\n        'fetch_failed',\n        key\n      );\n    }\n\n    try {\n      // Fetch from remote\n      const fetchOpts: FetchOptions = {};\n      if (options?.timeout) {\n        fetchOpts.timeout = options.timeout;\n      }\n      if (options?.headers) {\n        fetchOpts.headers = options.headers;\n      }\n      const { content, metadata } = await fetcher.fetch(url, fetchOpts);\n\n      // Build full metadata\n      const fullMetadata: Partial<CacheMetadata> = {\n        source: source as CacheSource,\n        sourceUrl: url,\n        contentType: metadata.contentType ?? 'text/plain',\n      };\n      if (metadata.etag) {\n        fullMetadata.etag = metadata.etag;\n      }\n      if (metadata.title) {\n        fullMetadata.title = metadata.title;\n      }\n      if (metadata.lastModified) {\n        fullMetadata.lastModified = metadata.lastModified;\n      }\n      if (options?.tags) {\n        fullMetadata.tags = options.tags;\n      }\n\n      // Cache the content\n      const cacheOpts: CacheOptions = {\n        ttl: options?.ttl ?? this.defaultTtl,\n      };\n      if (options?.tags) {\n        cacheOpts.tags = options.tags;\n      }\n      await this.cache.set(key, content, fullMetadata, cacheOpts);\n\n      // Return the entry\n      const entry = await this.cache.get<T>(key);\n      if (!entry) {\n        throw new CacheError('Failed to retrieve cached entry after write', 'read_failed', key);\n      }\n\n      return entry;\n    } catch (error) {\n      if (error instanceof CacheError) {\n        throw error;\n      }\n      throw new CacheError(\n        `Failed to fetch content: ${error instanceof Error ? error.message : String(error)}`,\n        'fetch_failed',\n        key,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  private getSourceFromUrl(url: string): string {\n    try {\n      const parsed = new URL(url);\n      const hostname = parsed.hostname.toLowerCase();\n\n      // Map common hostnames to sources\n      if (hostname.includes('confluence') || hostname.includes('atlassian.net')) {\n        return 'confluence';\n      }\n      if (hostname.includes('github.com') || hostname.includes('github')) {\n        return 'github';\n      }\n      if (hostname.includes('notion.so') || hostname.includes('notion')) {\n        return 'notion';\n      }\n\n      // Default to custom\n      return this.defaultSource;\n    } catch {\n      // Invalid URL, might be a file path\n      return 'local';\n    }\n  }\n\n  private chunkArray<T>(array: T[], size: number): T[][] {\n    const chunks: T[][] = [];\n    for (let i = 0; i < array.length; i += size) {\n      chunks.push(array.slice(i, i + size));\n    }\n    return chunks;\n  }\n}\n\n/**\n * Create a cache manager\n */\nexport function createCacheManager(options: CacheManagerOptions): CacheManager {\n  return new CacheManager(options);\n}\n","/**\n * Context Loader\n *\n * Loads shared context from remote documentation providers with cache-first resolution.\n * Handles first-run scenarios when cache is empty.\n */\n\nimport type { CacheManager, CacheOptions, FetchOptions } from '../cache/index.js';\nimport type { CacheEntry, CacheMetadata } from '../cache/types.js';\n\n/**\n * Context source definition\n */\nexport interface ContextSource {\n  /**\n   * Unique identifier for this context\n   */\n  key: string;\n\n  /**\n   * Remote URL to fetch from\n   */\n  url: string;\n\n  /**\n   * Optional title for the context\n   */\n  title?: string;\n\n  /**\n   * Optional tags for categorization\n   */\n  tags?: string[];\n\n  /**\n   * Whether this context is required (fail if cannot load)\n   */\n  required?: boolean;\n}\n\n/**\n * Context load result\n */\nexport interface ContextLoadResult {\n  /**\n   * Successfully loaded contexts\n   */\n  loaded: {\n    key: string;\n    content: string;\n    fromCache: boolean;\n    metadata: CacheMetadata;\n  }[];\n\n  /**\n   * Failed contexts\n   */\n  failed: {\n    key: string;\n    error: string;\n    required: boolean;\n  }[];\n\n  /**\n   * Total duration in milliseconds\n   */\n  duration: number;\n}\n\n/**\n * Options for the context loader\n */\nexport interface ContextLoaderOptions {\n  /**\n   * The cache manager to use\n   */\n  cacheManager: CacheManager;\n\n  /**\n   * Default TTL for cached contexts (seconds)\n   */\n  defaultTtl?: number;\n\n  /**\n   * Whether to fail on any required context failure\n   */\n  failOnRequired?: boolean;\n\n  /**\n   * Maximum concurrent fetches\n   */\n  concurrency?: number;\n}\n\n/**\n * Options for loading contexts\n */\nexport interface LoadOptions extends CacheOptions, FetchOptions {\n  /**\n   * Continue loading other contexts if one fails\n   */\n  continueOnError?: boolean;\n\n  /**\n   * Progress callback\n   */\n  onProgress?: (loaded: number, total: number, current: string) => void;\n}\n\n/**\n * Context Loader\n *\n * Provides cache-first context resolution with graceful degradation\n * for first-run scenarios when the cache is empty.\n */\nexport class ContextLoader {\n  private cacheManager: CacheManager;\n  private defaultTtl: number;\n  private failOnRequired: boolean;\n  private concurrency: number;\n\n  constructor(options: ContextLoaderOptions) {\n    this.cacheManager = options.cacheManager;\n    this.defaultTtl = options.defaultTtl ?? 3600;\n    this.failOnRequired = options.failOnRequired ?? true;\n    this.concurrency = options.concurrency ?? 5;\n  }\n\n  /**\n   * Load a single context\n   */\n  async load(source: ContextSource, options?: LoadOptions): Promise<CacheEntry<string>> {\n    try {\n      const cacheOptions: CacheOptions & FetchOptions = {\n        ...options,\n        ttl: options?.ttl ?? this.defaultTtl,\n      };\n      if (source.tags) {\n        cacheOptions.tags = source.tags;\n      }\n      const entry = await this.cacheManager.getWithFallback<string>(\n        source.key,\n        source.url,\n        cacheOptions\n      );\n\n      return entry;\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (source.required && this.failOnRequired) {\n        throw new Error(`Failed to load required context \"${source.key}\": ${message}`);\n      }\n\n      throw error;\n    }\n  }\n\n  /**\n   * Load multiple contexts\n   */\n  async loadMany(sources: ContextSource[], options?: LoadOptions): Promise<ContextLoadResult> {\n    const startTime = Date.now();\n    const result: ContextLoadResult = {\n      loaded: [],\n      failed: [],\n      duration: 0,\n    };\n\n    // Track which entries were loaded from cache vs fetched\n    const cacheStatuses = new Map<string, boolean>();\n\n    // Check cache status for all keys first\n    for (const source of sources) {\n      const status = await this.cacheManager.getCache().getStatus(source.key);\n      cacheStatuses.set(source.key, status === 'valid');\n    }\n\n    // Process in chunks for concurrency control\n    const chunks = this.chunkArray(sources, this.concurrency);\n\n    let completed = 0;\n    for (const chunk of chunks) {\n      const promises = chunk.map(async (source) => {\n        try {\n          const itemCacheOptions: CacheOptions & FetchOptions = {\n            ...options,\n            ttl: options?.ttl ?? this.defaultTtl,\n          };\n          if (source.tags) {\n            itemCacheOptions.tags = source.tags;\n          }\n          const entry = await this.cacheManager.getWithFallback<string>(\n            source.key,\n            source.url,\n            itemCacheOptions\n          );\n\n          result.loaded.push({\n            key: source.key,\n            content: entry.content,\n            fromCache: cacheStatuses.get(source.key) ?? false,\n            metadata: entry.metadata,\n          });\n        } catch (error) {\n          const message = error instanceof Error ? error.message : String(error);\n          result.failed.push({\n            key: source.key,\n            error: message,\n            required: source.required ?? false,\n          });\n\n          if (source.required && this.failOnRequired && !options?.continueOnError) {\n            throw new Error(`Failed to load required context \"${source.key}\": ${message}`);\n          }\n        }\n      });\n\n      await Promise.all(promises);\n\n      completed += chunk.length;\n      if (options?.onProgress) {\n        const currentKey = chunk[chunk.length - 1]?.key ?? '';\n        options.onProgress(completed, sources.length, currentKey);\n      }\n    }\n\n    result.duration = Date.now() - startTime;\n\n    // Check for required failures\n    if (this.failOnRequired && !options?.continueOnError) {\n      const requiredFailures = result.failed.filter((f) => f.required);\n      if (requiredFailures.length > 0) {\n        throw new Error(\n          `Failed to load ${requiredFailures.length} required context(s): ${requiredFailures.map((f) => f.key).join(', ')}`\n        );\n      }\n    }\n\n    return result;\n  }\n\n  /**\n   * Load contexts by tag\n   */\n  async loadByTag(tag: string, _options?: LoadOptions): Promise<ContextLoadResult> {\n    const startTime = Date.now();\n    const result: ContextLoadResult = {\n      loaded: [],\n      failed: [],\n      duration: 0,\n    };\n\n    // Get all cached entries with this tag\n    const entries = await this.cacheManager.getCache().list({ tag });\n\n    for (const entry of entries) {\n      try {\n        const cached = await this.cacheManager.getCache().get<string>(entry.key);\n        if (cached) {\n          result.loaded.push({\n            key: entry.key,\n            content: cached.content,\n            fromCache: true,\n            metadata: cached.metadata,\n          });\n        }\n      } catch (error) {\n        result.failed.push({\n          key: entry.key,\n          error: error instanceof Error ? error.message : String(error),\n          required: false,\n        });\n      }\n    }\n\n    result.duration = Date.now() - startTime;\n    return result;\n  }\n\n  /**\n   * Refresh all contexts (sync from remote)\n   */\n  async refresh(sources: ContextSource[], options?: LoadOptions): Promise<ContextLoadResult> {\n    return this.loadMany(sources, {\n      ...options,\n      forceRefresh: true,\n    });\n  }\n\n  /**\n   * Check if all required contexts are available (cached or fetchable)\n   */\n  async checkAvailability(\n    sources: ContextSource[]\n  ): Promise<{ available: string[]; missing: string[]; errors: string[] }> {\n    const available: string[] = [];\n    const missing: string[] = [];\n    const errors: string[] = [];\n\n    for (const source of sources) {\n      try {\n        // Check if cached\n        const hasCached = await this.cacheManager.getCache().has(source.key);\n        if (hasCached) {\n          available.push(source.key);\n          continue;\n        }\n\n        // Check if fetcher is available\n        const url = new URL(source.url);\n        const source_type = this.getSourceFromHostname(url.hostname);\n        if (this.cacheManager.hasFetcher(source_type)) {\n          missing.push(source.key); // Can be fetched but not cached\n        } else {\n          errors.push(`${source.key}: No fetcher for ${source_type}`);\n        }\n      } catch (error) {\n        errors.push(`${source.key}: ${error instanceof Error ? error.message : String(error)}`);\n      }\n    }\n\n    return { available, missing, errors };\n  }\n\n  /**\n   * Get the cache manager\n   */\n  getCacheManager(): CacheManager {\n    return this.cacheManager;\n  }\n\n  // Private helpers\n\n  private getSourceFromHostname(hostname: string): string {\n    const lower = hostname.toLowerCase();\n    if (lower.includes('confluence') || lower.includes('atlassian.net')) return 'confluence';\n    if (lower.includes('github.com') || lower.includes('github')) return 'github';\n    if (lower.includes('notion.so') || lower.includes('notion')) return 'notion';\n    return 'custom';\n  }\n\n  private chunkArray<T>(array: T[], size: number): T[][] {\n    const chunks: T[][] = [];\n    for (let i = 0; i < array.length; i += size) {\n      chunks.push(array.slice(i, i + size));\n    }\n    return chunks;\n  }\n}\n\n/**\n * Create a context loader\n */\nexport function createContextLoader(options: ContextLoaderOptions): ContextLoader {\n  return new ContextLoader(options);\n}\n","/**\n * Command Context\n *\n * Runtime context for command execution with graceful degradation support.\n */\n\nimport type { ResolvedCoreAIConfig } from '../config/types.js';\nimport type { AdapterType } from '../adapters/types.js';\nimport type { AdapterFactory } from '../adapters/factory.js';\nimport { createAdapterFactory } from '../adapters/factory.js';\nimport { loadConfig, configExists } from '../config/loader.js';\nimport type { CommandContext } from './types.js';\n\n/**\n * Options for creating a command context\n */\nexport interface CreateContextOptions {\n  /**\n   * Project root directory\n   */\n  projectRoot?: string;\n\n  /**\n   * Pre-loaded configuration (if already loaded)\n   */\n  config?: ResolvedCoreAIConfig;\n\n  /**\n   * Pre-created adapter factory (if already created)\n   */\n  adapterFactory?: AdapterFactory;\n}\n\n/**\n * Create a command execution context\n *\n * Handles configuration loading and adapter factory creation with graceful fallbacks.\n */\nexport function createCommandContext(options: CreateContextOptions = {}): CommandContext {\n  const projectRoot = options.projectRoot ?? process.cwd();\n\n  // Load config if not provided\n  let config: ResolvedCoreAIConfig | null = options.config ?? null;\n  if (!config && configExists(projectRoot)) {\n    try {\n      config = loadConfig(projectRoot);\n    } catch {\n      // Config loading failed, continue without config\n      config = null;\n    }\n  }\n\n  // Create adapter factory if config is available and factory not provided\n  let adapterFactory: AdapterFactory | null = options.adapterFactory ?? null;\n  if (!adapterFactory && config) {\n    try {\n      adapterFactory = createAdapterFactory(config);\n    } catch {\n      // Factory creation failed, continue without adapters\n      adapterFactory = null;\n    }\n  }\n\n  return {\n    config,\n    adapterFactory,\n    projectRoot,\n\n    hasIntegration(type: AdapterType): boolean {\n      if (!adapterFactory) return false;\n      return adapterFactory.hasIntegration(type);\n    },\n\n    async getAdapterSafe<T>(type: AdapterType): Promise<T | null> {\n      if (!adapterFactory) return null;\n      if (!adapterFactory.hasIntegration(type)) return null;\n\n      try {\n        const adapter = await adapterFactory.getAdapter(type);\n        return adapter as T;\n      } catch {\n        // Adapter creation failed, return null for graceful degradation\n        return null;\n      }\n    },\n  };\n}\n\n/**\n * Cleanup resources in a command context\n */\nexport async function cleanupContext(context: CommandContext): Promise<void> {\n  if (context.adapterFactory) {\n    await context.adapterFactory.disconnectAll();\n  }\n}\n\n/**\n * Execute a function with automatic context cleanup\n */\nexport async function withContext<T>(\n  options: CreateContextOptions,\n  fn: (context: CommandContext) => Promise<T>\n): Promise<T> {\n  const context = createCommandContext(options);\n  try {\n    return await fn(context);\n  } finally {\n    await cleanupContext(context);\n  }\n}\n","/**\n * Command Registry\n *\n * Central registry for command registration and discovery.\n */\n\nimport type {\n  CommandDefinition,\n  CommandMetadata,\n  MarkdownCommand,\n  RegistryEntry,\n  CommandCategory,\n  IntegrationDependency,\n} from './types.js';\nimport type { AdapterFactory } from '../adapters/factory.js';\n\n/**\n * Command Registry\n *\n * Manages registration and lookup of commands.\n */\nexport class CommandRegistry {\n  private commands = new Map<string, RegistryEntry>();\n  private adapterFactory: AdapterFactory | null = null;\n\n  /**\n   * Set the adapter factory for dependency checking\n   */\n  setAdapterFactory(factory: AdapterFactory | null): void {\n    this.adapterFactory = factory;\n    // Re-evaluate availability of all commands\n    this.updateAvailability();\n  }\n\n  /**\n   * Register a programmatic command\n   */\n  register(definition: CommandDefinition): void {\n    const metadata: CommandMetadata = {\n      name: definition.name,\n      description: definition.description,\n      category: definition.category,\n      dependencies: definition.dependencies ?? [],\n      sourcePath: '<programmatic>',\n      available: true,\n    };\n\n    // Check availability\n    this.checkAvailability(metadata);\n\n    this.commands.set(definition.name, {\n      metadata,\n      definition,\n      source: 'programmatic',\n    });\n  }\n\n  /**\n   * Register a markdown command\n   */\n  registerMarkdown(command: MarkdownCommand): void {\n    // Check availability\n    this.checkAvailability(command.metadata);\n\n    this.commands.set(command.metadata.name, {\n      metadata: command.metadata,\n      markdownCommand: command,\n      source: 'markdown',\n    });\n  }\n\n  /**\n   * Register multiple commands\n   */\n  registerAll(definitions: CommandDefinition[]): void {\n    for (const def of definitions) {\n      this.register(def);\n    }\n  }\n\n  /**\n   * Register multiple markdown commands\n   */\n  registerAllMarkdown(commands: MarkdownCommand[]): void {\n    for (const cmd of commands) {\n      this.registerMarkdown(cmd);\n    }\n  }\n\n  /**\n   * Unregister a command\n   */\n  unregister(name: string): boolean {\n    return this.commands.delete(name);\n  }\n\n  /**\n   * Get a command by name\n   */\n  get(name: string): RegistryEntry | undefined {\n    return this.commands.get(name);\n  }\n\n  /**\n   * Check if a command exists\n   */\n  has(name: string): boolean {\n    return this.commands.has(name);\n  }\n\n  /**\n   * Get all registered commands\n   */\n  getAll(): RegistryEntry[] {\n    return Array.from(this.commands.values());\n  }\n\n  /**\n   * Get available commands (dependencies satisfied)\n   */\n  getAvailable(): RegistryEntry[] {\n    return this.getAll().filter((entry) => entry.metadata.available);\n  }\n\n  /**\n   * Get unavailable commands\n   */\n  getUnavailable(): RegistryEntry[] {\n    return this.getAll().filter((entry) => !entry.metadata.available);\n  }\n\n  /**\n   * Get commands by category\n   */\n  getByCategory(category: CommandCategory): RegistryEntry[] {\n    return this.getAll().filter((entry) => entry.metadata.category === category);\n  }\n\n  /**\n   * Get command names\n   */\n  getNames(): string[] {\n    return Array.from(this.commands.keys());\n  }\n\n  /**\n   * Clear all registered commands\n   */\n  clear(): void {\n    this.commands.clear();\n  }\n\n  /**\n   * Get the number of registered commands\n   */\n  get size(): number {\n    return this.commands.size;\n  }\n\n  /**\n   * Check and update availability for a command metadata\n   */\n  private checkAvailability(metadata: CommandMetadata): void {\n    const missingDeps = this.getMissingDependencies(metadata.dependencies);\n\n    if (missingDeps.length > 0) {\n      const requiredMissing = missingDeps.filter((d) => d.required);\n      if (requiredMissing.length > 0) {\n        metadata.available = false;\n        metadata.unavailableReason = `Missing required integrations: ${requiredMissing.map((d) => d.type).join(', ')}`;\n      } else {\n        // Optional deps missing, still available but may degrade\n        metadata.available = true;\n      }\n    } else {\n      metadata.available = true;\n      delete metadata.unavailableReason;\n    }\n  }\n\n  /**\n   * Get missing dependencies\n   */\n  private getMissingDependencies(dependencies: IntegrationDependency[]): IntegrationDependency[] {\n    const factory = this.adapterFactory;\n    if (!factory) {\n      // No adapter factory, assume all required deps are missing\n      return dependencies.filter((d) => d.required);\n    }\n\n    return dependencies.filter((dep) => !factory.hasIntegration(dep.type));\n  }\n\n  /**\n   * Update availability for all commands\n   */\n  private updateAvailability(): void {\n    for (const entry of this.commands.values()) {\n      this.checkAvailability(entry.metadata);\n    }\n  }\n\n  /**\n   * Get dependency status for a command\n   */\n  getDependencyStatus(name: string): {\n    satisfied: IntegrationDependency[];\n    missing: IntegrationDependency[];\n  } | null {\n    const entry = this.commands.get(name);\n    if (!entry) return null;\n\n    const deps = entry.metadata.dependencies;\n    const missing = this.getMissingDependencies(deps);\n    const satisfied = deps.filter((d) => !missing.includes(d));\n\n    return { satisfied, missing };\n  }\n}\n\n/**\n * Create a new command registry\n */\nexport function createCommandRegistry(): CommandRegistry {\n  return new CommandRegistry();\n}\n\n/**\n * Global command registry instance\n */\nlet globalRegistry: CommandRegistry | null = null;\n\n/**\n * Get or create the global command registry\n */\nexport function getGlobalRegistry(): CommandRegistry {\n  if (!globalRegistry) {\n    globalRegistry = new CommandRegistry();\n  }\n  return globalRegistry;\n}\n\n/**\n * Reset the global registry (primarily for testing)\n */\nexport function resetGlobalRegistry(): void {\n  globalRegistry = null;\n}\n","/**\n * Command Loader\n *\n * Loads commands from markdown files in the coreai/commands/ directory.\n */\n\nimport { promises as fs } from 'fs';\nimport { join, basename, dirname, relative } from 'path';\nimport type {\n  CommandMetadata,\n  MarkdownCommand,\n  CommandCategory,\n  IntegrationDependency,\n  CommandLoaderOptions,\n  CommandLoadResult,\n} from './types.js';\nimport type { AdapterType } from '../adapters/types.js';\n\n/**\n * Frontmatter data from markdown file\n */\ninterface CommandFrontmatter {\n  description?: string;\n  'argument-hint'?: string;\n  requires?: string[];\n  optional?: string[];\n}\n\n/**\n * Parse YAML-like frontmatter from markdown content\n */\nfunction parseFrontmatter(content: string): { frontmatter: CommandFrontmatter; body: string } {\n  const match = content.match(/^---\\r?\\n([\\s\\S]*?)\\r?\\n---\\r?\\n([\\s\\S]*)$/);\n\n  if (!match) {\n    return { frontmatter: {}, body: content };\n  }\n\n  const frontmatterText = match[1] ?? '';\n  const body = match[2] ?? '';\n\n  // Simple YAML-like parsing (key: value)\n  const frontmatter: CommandFrontmatter = {};\n  const lines = frontmatterText.split(/\\r?\\n/);\n\n  for (const line of lines) {\n    const colonIndex = line.indexOf(':');\n    if (colonIndex === -1) continue;\n\n    const key = line.slice(0, colonIndex).trim();\n    let value = line.slice(colonIndex + 1).trim();\n\n    // Handle arrays (simple format: [item1, item2])\n    if (value.startsWith('[') && value.endsWith(']')) {\n      const arrayContent = value.slice(1, -1);\n      const items = arrayContent.split(',').map((s) => s.trim().replace(/['\"]/g, ''));\n      (frontmatter as Record<string, unknown>)[key] = items;\n    } else {\n      // Remove quotes if present\n      if (\n        (value.startsWith('\"') && value.endsWith('\"')) ||\n        (value.startsWith(\"'\") && value.endsWith(\"'\"))\n      ) {\n        value = value.slice(1, -1);\n      }\n      (frontmatter as Record<string, unknown>)[key] = value;\n    }\n  }\n\n  return { frontmatter, body };\n}\n\n/**\n * Parse markdown sections\n */\nfunction parseSections(body: string): MarkdownCommand['sections'] {\n  const sections: MarkdownCommand['sections'] = {};\n\n  // Extract title (first h1)\n  const titleMatch = body.match(/^#\\s+(.+)$/m);\n  if (titleMatch?.[1]) {\n    sections.title = titleMatch[1].trim();\n  }\n\n  // Extract instructions section\n  const instructionsMatch = body.match(/##\\s*Instructions?\\s*\\n([\\s\\S]*?)(?=\\n##|$)/i);\n  if (instructionsMatch?.[1]) {\n    sections.instructions = instructionsMatch[1].trim();\n  }\n\n  // Extract fallbacks section\n  const fallbacksMatch = body.match(/##\\s*Fallbacks?\\s*\\n([\\s\\S]*?)(?=\\n##|$)/i);\n  if (fallbacksMatch?.[1]) {\n    sections.fallbacks = fallbacksMatch[1].trim();\n  }\n\n  // Extract output format section\n  const outputMatch = body.match(/##\\s*Output\\s*(Format)?\\s*\\n([\\s\\S]*?)(?=\\n##|$)/i);\n  if (outputMatch?.[2]) {\n    sections.outputFormat = outputMatch[2].trim();\n  }\n\n  return sections;\n}\n\n/**\n * Map integration name to adapter type\n */\nfunction mapIntegrationToAdapterType(integration: string): AdapterType | null {\n  const mapping: Record<string, AdapterType> = {\n    // Issue tracker mappings\n    jira: 'issue_tracker',\n    issue_tracker: 'issue_tracker',\n    issues: 'issue_tracker',\n    linear: 'issue_tracker',\n    github_issues: 'issue_tracker',\n\n    // Git provider mappings\n    git: 'git',\n    github: 'git',\n    gitlab: 'git',\n    bitbucket: 'git',\n\n    // Documentation mappings\n    docs: 'documentation',\n    documentation: 'documentation',\n    confluence: 'documentation',\n    notion: 'documentation',\n    wiki: 'documentation',\n\n    // State mappings\n    state: 'state',\n    filesystem: 'state',\n  };\n\n  return mapping[integration.toLowerCase()] ?? null;\n}\n\n/**\n * Parse integration dependencies from frontmatter\n */\nfunction parseDependencies(frontmatter: CommandFrontmatter): IntegrationDependency[] {\n  const dependencies: IntegrationDependency[] = [];\n\n  // Required dependencies\n  if (frontmatter.requires && Array.isArray(frontmatter.requires)) {\n    for (const req of frontmatter.requires) {\n      const type = mapIntegrationToAdapterType(req);\n      if (type) {\n        dependencies.push({\n          type,\n          required: true,\n          description: `Requires ${req} integration`,\n        });\n      }\n    }\n  }\n\n  // Optional dependencies\n  if (frontmatter.optional && Array.isArray(frontmatter.optional)) {\n    for (const opt of frontmatter.optional) {\n      const type = mapIntegrationToAdapterType(opt);\n      if (type) {\n        dependencies.push({\n          type,\n          required: false,\n          description: `Optionally uses ${opt} integration`,\n        });\n      }\n    }\n  }\n\n  return dependencies;\n}\n\n/**\n * Derive command name from file path\n */\nfunction deriveCommandName(filePath: string, baseDir: string): string {\n  const relativePath = relative(baseDir, filePath);\n  const name = basename(filePath, '.md');\n\n  // Include parent directory for nested commands (e.g., core/check-inbox -> check-inbox)\n  // But not for simple structure\n  const dir = dirname(relativePath);\n  if (dir === '.' || dir === 'core' || dir === 'optional') {\n    return name;\n  }\n\n  // For deeper nesting, include the subdirectory\n  return name;\n}\n\n/**\n * Derive category from file path\n */\nfunction deriveCategoryFromPath(filePath: string, baseDir: string): CommandCategory {\n  const relativePath = relative(baseDir, filePath);\n  const parts = relativePath.split('/');\n\n  if (parts.includes('optional')) {\n    return 'optional';\n  }\n  if (parts.includes('core')) {\n    return 'core';\n  }\n\n  // Default to custom for project-specific commands\n  return 'custom';\n}\n\n/**\n * Load a single command from a markdown file\n */\nexport async function loadCommandFromFile(\n  filePath: string,\n  baseDir: string,\n  categoryOverride?: CommandCategory\n): Promise<MarkdownCommand> {\n  const content = await fs.readFile(filePath, 'utf-8');\n  const { frontmatter, body } = parseFrontmatter(content);\n  const sections = parseSections(body);\n\n  const name = deriveCommandName(filePath, baseDir);\n  const category = categoryOverride ?? deriveCategoryFromPath(filePath, baseDir);\n  const dependencies = parseDependencies(frontmatter);\n\n  const metadata: CommandMetadata = {\n    name,\n    description: frontmatter.description ?? sections.title ?? name,\n    category,\n    dependencies,\n    sourcePath: filePath,\n    available: true, // Will be updated by registry\n  };\n  if (frontmatter['argument-hint']) {\n    metadata.argumentHint = frontmatter['argument-hint'];\n  }\n\n  return {\n    metadata,\n    content: body,\n    sections,\n  };\n}\n\n/**\n * Find all markdown files in a directory\n */\nasync function findMarkdownFiles(dir: string, recursive: boolean): Promise<string[]> {\n  const files: string[] = [];\n\n  try {\n    const entries = await fs.readdir(dir, { withFileTypes: true });\n\n    for (const entry of entries) {\n      const fullPath = join(dir, entry.name);\n\n      if (entry.isDirectory() && recursive) {\n        const subFiles = await findMarkdownFiles(fullPath, recursive);\n        files.push(...subFiles);\n      } else if (entry.isFile() && entry.name.endsWith('.md')) {\n        files.push(fullPath);\n      }\n    }\n  } catch (error) {\n    // Directory doesn't exist or can't be read\n    if ((error as NodeJS.ErrnoException).code !== 'ENOENT') {\n      throw error;\n    }\n  }\n\n  return files;\n}\n\n/**\n * Load commands from a directory\n */\nexport async function loadCommandsFromDirectory(\n  options: CommandLoaderOptions\n): Promise<CommandLoadResult> {\n  const result: CommandLoadResult = {\n    loaded: [],\n    errors: [],\n  };\n\n  const files = await findMarkdownFiles(options.directory, options.recursive ?? true);\n\n  for (const filePath of files) {\n    try {\n      const command = await loadCommandFromFile(filePath, options.directory, options.category);\n\n      // Apply filter if provided\n      if (options.filter && !options.filter(command.metadata)) {\n        continue;\n      }\n\n      result.loaded.push(command);\n    } catch (error) {\n      result.errors.push({\n        path: filePath,\n        error: error instanceof Error ? error.message : String(error),\n      });\n    }\n  }\n\n  return result;\n}\n\n/**\n * Load commands from the default CoreAI commands directory\n */\nexport async function loadCoreAICommands(projectRoot: string): Promise<CommandLoadResult> {\n  const commandsDir = join(projectRoot, 'coreai', 'commands');\n  return loadCommandsFromDirectory({\n    directory: commandsDir,\n    category: 'core', // Will be overridden by path derivation\n    recursive: true,\n  });\n}\n\n/**\n * Load commands from both core and custom directories\n */\nexport async function loadAllCommands(\n  coreCommandsDir: string,\n  customCommandsDir?: string\n): Promise<CommandLoadResult> {\n  const result: CommandLoadResult = {\n    loaded: [],\n    errors: [],\n  };\n\n  // Load core commands\n  const coreResult = await loadCommandsFromDirectory({\n    directory: coreCommandsDir,\n    category: 'core',\n    recursive: true,\n  });\n  result.loaded.push(...coreResult.loaded);\n  result.errors.push(...coreResult.errors);\n\n  // Load custom commands if directory specified\n  if (customCommandsDir) {\n    const customResult = await loadCommandsFromDirectory({\n      directory: customCommandsDir,\n      category: 'custom',\n      recursive: true,\n    });\n    result.loaded.push(...customResult.loaded);\n    result.errors.push(...customResult.errors);\n  }\n\n  return result;\n}\n","/**\n * Command Runner\n *\n * Executes commands with graceful degradation support.\n */\n\nimport type {\n  CommandDefinition,\n  CommandResult,\n  CommandContext,\n  BaseCommandOptions,\n  IntegrationDependency,\n} from './types.js';\nimport type { CommandRegistry } from './registry.js';\nimport { createCommandContext, cleanupContext, type CreateContextOptions } from './context.js';\n\n/**\n * Options for running a command\n */\nexport interface RunCommandOptions extends BaseCommandOptions {\n  /**\n   * Pre-created command context\n   */\n  context?: CommandContext;\n\n  /**\n   * Whether to clean up context after execution\n   */\n  cleanupAfter?: boolean;\n}\n\n/**\n * Run a registered command\n */\nexport async function runCommand<TResult = unknown>(\n  registry: CommandRegistry,\n  name: string,\n  args: string[],\n  options: RunCommandOptions = {}\n): Promise<CommandResult<TResult>> {\n  const entry = registry.get(name);\n\n  if (!entry) {\n    return {\n      success: false,\n      error: `Command not found: ${name}`,\n    };\n  }\n\n  if (!entry.metadata.available) {\n    return {\n      success: false,\n      error: entry.metadata.unavailableReason ?? 'Command is unavailable',\n    };\n  }\n\n  if (!entry.definition) {\n    return {\n      success: false,\n      error: `Command ${name} is a markdown command and cannot be executed programmatically`,\n    };\n  }\n\n  // Create or use provided context\n  const contextOptions: CreateContextOptions = {};\n  if (options.projectRoot) {\n    contextOptions.projectRoot = options.projectRoot;\n  }\n  const context = options.context ?? createCommandContext(contextOptions);\n\n  try {\n    const result = (await entry.definition.handler(\n      args,\n      options,\n      context\n    )) as CommandResult<TResult>;\n\n    // Add skipped steps for optional integrations that aren't available\n    if (entry.metadata.dependencies) {\n      // Find optional deps that can't be accessed in the current context\n      const optionalDeps = entry.metadata.dependencies.filter((d) => !d.required);\n      const optionalUnavailable = optionalDeps.filter((d) => !context.hasIntegration(d.type));\n\n      if (optionalUnavailable.length > 0) {\n        result.skippedSteps = result.skippedSteps ?? [];\n        for (const dep of optionalUnavailable) {\n          result.skippedSteps.push({\n            step: `${dep.type} integration`,\n            reason: dep.description ?? `${dep.type} not configured`,\n          });\n        }\n      }\n    }\n\n    return result;\n  } catch (error) {\n    return {\n      success: false,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  } finally {\n    if (options.cleanupAfter !== false && !options.context) {\n      await cleanupContext(context);\n    }\n  }\n}\n\n/**\n * Execute a step with graceful degradation\n *\n * If the required integration is not available, returns a skip result instead of failing.\n */\nexport async function executeWithDegradation<T>(\n  context: CommandContext,\n  dependency: IntegrationDependency,\n  step: () => Promise<T>,\n  fallback?: () => Promise<T>\n): Promise<{ result: T | null; skipped: boolean; reason?: string }> {\n  if (!context.hasIntegration(dependency.type)) {\n    if (dependency.required) {\n      throw new Error(`Required integration missing: ${dependency.type}`);\n    }\n\n    // Optional integration missing, try fallback or skip\n    if (fallback) {\n      try {\n        const result = await fallback();\n        return { result, skipped: false };\n      } catch {\n        return {\n          result: null,\n          skipped: true,\n          reason: dependency.description ?? `${dependency.type} not available`,\n        };\n      }\n    }\n\n    return {\n      result: null,\n      skipped: true,\n      reason: dependency.description ?? `${dependency.type} not available`,\n    };\n  }\n\n  // Integration available, execute step\n  const result = await step();\n  return { result, skipped: false };\n}\n\n/**\n * Create a command handler with automatic degradation tracking\n */\nexport function createDegradingHandler<TOptions extends BaseCommandOptions, TResult>(\n  handler: (\n    args: string[],\n    options: TOptions,\n    context: CommandContext,\n    track: StepTracker\n  ) => Promise<TResult>\n): CommandDefinition<TOptions, TResult>['handler'] {\n  return async (args, options, context) => {\n    const tracker = new StepTracker();\n\n    try {\n      const data = await handler(args, options, context, tracker);\n      return {\n        success: true,\n        data,\n        warnings: tracker.warnings,\n        skippedSteps: tracker.skippedSteps,\n      };\n    } catch (error) {\n      return {\n        success: false,\n        error: error instanceof Error ? error.message : String(error),\n        warnings: tracker.warnings,\n        skippedSteps: tracker.skippedSteps,\n      };\n    }\n  };\n}\n\n/**\n * Tracks skipped steps and warnings during command execution\n */\nexport class StepTracker {\n  readonly skippedSteps: { step: string; reason: string }[] = [];\n  readonly warnings: string[] = [];\n\n  /**\n   * Record a skipped step\n   */\n  skip(step: string, reason: string): void {\n    this.skippedSteps.push({ step, reason });\n  }\n\n  /**\n   * Record a warning\n   */\n  warn(message: string): void {\n    this.warnings.push(message);\n  }\n\n  /**\n   * Execute a step with optional fallback\n   */\n  async tryStep<T>(\n    stepName: string,\n    context: CommandContext,\n    dependency: IntegrationDependency,\n    step: () => Promise<T>,\n    fallback?: () => Promise<T>\n  ): Promise<T | null> {\n    const result = await executeWithDegradation(context, dependency, step, fallback);\n\n    if (result.skipped) {\n      this.skip(stepName, result.reason ?? 'Integration not available');\n    }\n\n    return result.result;\n  }\n}\n","/**\n * Skill Generator\n *\n * Discovers skill source files from skills/ directory and compiles them\n * to .claude/skills/<name>/SKILL.md format for Claude Code.\n *\n * Source: skills/<category>/<name>/SKILL.md (grouped by category)\n * Output: .claude/skills/<name>/SKILL.md (flat, one level deep)\n */\n\nimport { existsSync, mkdirSync, writeFileSync, readFileSync, readdirSync, statSync } from 'fs';\nimport { join, dirname } from 'path';\nimport type { ResolvedCoreAIConfig } from '../config/types.js';\nimport type {\n  SkillTemplate,\n  SkillVariables,\n  GenerateSkillsOptions,\n  GenerateSkillsResult,\n  GeneratedSkill,\n  SkillDependency,\n  SkillCategory,\n} from './types.js';\n\n/**\n * Get the default core skills directory (bundled with CoreAI package)\n */\nexport function getCoreSkillsDir(): string {\n  let currentDir = dirname(import.meta.url.replace('file://', ''));\n  for (let i = 0; i < 5; i++) {\n    if (existsSync(join(currentDir, 'package.json'))) {\n      return join(currentDir, 'skills');\n    }\n    currentDir = dirname(currentDir);\n  }\n  return join(dirname(dirname(dirname(import.meta.url.replace('file://', '')))), 'skills');\n}\n\n/**\n * Discover skill source files from a skills directory.\n *\n * Scans skills/<category>/<name>/SKILL.md structure.\n * Each category directory (core, git, etc.) contains skill directories.\n */\nexport function discoverSkills(skillsDir: string): SkillTemplate[] {\n  const templates: SkillTemplate[] = [];\n\n  if (!existsSync(skillsDir)) {\n    return templates;\n  }\n\n  // Scan category directories (core/, git/, etc.)\n  const categories = readdirSync(skillsDir);\n\n  for (const category of categories) {\n    const categoryPath = join(skillsDir, category);\n    const stat = statSync(categoryPath);\n    if (!stat.isDirectory()) continue;\n\n    // Skip hidden/underscore directories\n    if (category.startsWith('.') || category.startsWith('_')) continue;\n\n    // Scan skill directories within this category\n    const skillDirs = readdirSync(categoryPath);\n\n    for (const skillName of skillDirs) {\n      const skillDir = join(categoryPath, skillName);\n      const skillStat = statSync(skillDir);\n      if (!skillStat.isDirectory()) continue;\n\n      const skillFile = join(skillDir, 'SKILL.md');\n      if (!existsSync(skillFile)) continue;\n\n      try {\n        const content = readFileSync(skillFile, 'utf-8');\n        const template = parseSkillFile(skillName, category as SkillCategory, content);\n        templates.push(template);\n      } catch {\n        // Skip invalid skill files\n      }\n    }\n  }\n\n  return templates;\n}\n\n/**\n * Parse a SKILL.md file into a SkillTemplate\n */\nexport function parseSkillFile(\n  name: string,\n  category: SkillCategory,\n  content: string\n): SkillTemplate {\n  const template: SkillTemplate = {\n    name,\n    description: name,\n    category,\n    content,\n  };\n\n  // Parse frontmatter\n  const frontmatterMatch = content.match(/^---\\r?\\n([\\s\\S]*?)\\r?\\n---\\r?\\n/);\n  if (!frontmatterMatch) {\n    return template;\n  }\n\n  const frontmatter = frontmatterMatch[1]!;\n  const lines = frontmatter.split(/\\r?\\n/);\n  const dependencies: SkillDependency[] = [];\n\n  for (const line of lines) {\n    const colonIndex = line.indexOf(':');\n    if (colonIndex === -1) continue;\n\n    const key = line.slice(0, colonIndex).trim();\n    let value = line.slice(colonIndex + 1).trim();\n\n    // Remove quotes\n    if (\n      (value.startsWith('\"') && value.endsWith('\"')) ||\n      (value.startsWith(\"'\") && value.endsWith(\"'\"))\n    ) {\n      value = value.slice(1, -1);\n    }\n\n    switch (key) {\n      case 'name':\n        template.name = value;\n        break;\n      case 'description':\n        template.description = value;\n        break;\n      case 'argument-hint':\n        template.argumentHint = value;\n        break;\n      case 'requires':\n        if (value.startsWith('[') && value.endsWith(']')) {\n          const items = value\n            .slice(1, -1)\n            .split(',')\n            .map((s) => s.trim().replace(/['\"]/g, ''));\n          for (const item of items) {\n            if (item) {\n              dependencies.push({\n                type: mapIntegrationName(item),\n                required: true,\n              });\n            }\n          }\n        }\n        break;\n      case 'optional':\n        if (value.startsWith('[') && value.endsWith(']')) {\n          const items = value\n            .slice(1, -1)\n            .split(',')\n            .map((s) => s.trim().replace(/['\"]/g, ''));\n          for (const item of items) {\n            if (item) {\n              dependencies.push({\n                type: mapIntegrationName(item),\n                required: false,\n              });\n            }\n          }\n        }\n        break;\n    }\n  }\n\n  if (dependencies.length > 0) {\n    template.dependencies = dependencies;\n  }\n\n  return template;\n}\n\n/**\n * Map integration name to adapter type\n */\nfunction mapIntegrationName(name: string): 'issue_tracker' | 'git' | 'documentation' | 'state' {\n  const lower = name.toLowerCase();\n\n  if (['jira', 'linear', 'issue_tracker', 'issues', 'github-issues'].includes(lower)) {\n    return 'issue_tracker';\n  }\n  if (['git', 'github', 'gitlab', 'bitbucket'].includes(lower)) {\n    return 'git';\n  }\n  if (['docs', 'documentation', 'confluence', 'notion', 'wiki'].includes(lower)) {\n    return 'documentation';\n  }\n\n  return 'state';\n}\n\n/**\n * Extract variables from config for template substitution\n */\nexport function extractVariables(config?: ResolvedCoreAIConfig | null): SkillVariables {\n  const vars: SkillVariables = {};\n\n  if (!config) {\n    return vars;\n  }\n\n  // Project variables\n  vars.PROJECT_NAME = config.project.name;\n  vars.PROJECT_ROOT = config.project.root;\n  if (config.project.type) {\n    vars.PROJECT_TYPE = config.project.type;\n  }\n\n  // Issue tracker variables\n  if (config.integrations?.issue_tracker) {\n    const tracker = config.integrations.issue_tracker;\n    if (tracker.config?.project_key) {\n      vars.JIRA_PROJECT = tracker.config.project_key;\n    }\n    if (tracker.config?.base_url) {\n      vars.JIRA_URL = tracker.config.base_url;\n    }\n  }\n\n  // Git variables\n  if (config.integrations?.git) {\n    const git = config.integrations.git;\n    if (git.config?.repo) {\n      vars.GITHUB_REPO = git.config.repo;\n    }\n    if (git.config?.owner) {\n      vars.GITHUB_OWNER = git.config.owner;\n    }\n    if (git.config?.default_branch) {\n      vars.DEFAULT_BRANCH = git.config.default_branch;\n    }\n  }\n\n  // Documentation variables\n  if (config.integrations?.documentation) {\n    const docs = config.integrations.documentation;\n    if (docs.config?.space_key) {\n      vars.CONFLUENCE_SPACE = docs.config.space_key;\n    }\n    if (docs.config?.base_url) {\n      vars.CONFLUENCE_URL = docs.config.base_url;\n    }\n    if (docs.config?.base_path) {\n      vars.DOCS_PATH = docs.config.base_path;\n    }\n  }\n\n  // Quality gate commands\n  if (config.quality_gates) {\n    const gates = config.quality_gates;\n    // Map common gate names to variables\n    const gateMappings: Record<string, keyof SkillVariables> = {\n      lint: 'LINT_CMD',\n      test: 'TEST_CMD',\n      build: 'BUILD_CMD',\n      static_analysis: 'STATIC_ANALYSIS_CMD',\n      staticAnalysis: 'STATIC_ANALYSIS_CMD',\n    };\n\n    for (const [gateName, gate] of Object.entries(gates)) {\n      const varName = gateMappings[gateName];\n      if (varName) {\n        vars[varName] = gate.command;\n      }\n    }\n  }\n\n  // Tech stack\n  if (config.tech_stack?.primary_language) {\n    vars.PRIMARY_LANGUAGE = config.tech_stack.primary_language;\n  }\n\n  return vars;\n}\n\n/**\n * Substitute variables in template content\n */\nexport function substituteVariables(content: string, variables: SkillVariables): string {\n  let result = content;\n\n  for (const [key, value] of Object.entries(variables)) {\n    if (value !== undefined) {\n      // Replace {{VARIABLE}} pattern\n      const pattern = new RegExp(`\\\\{\\\\{${key}\\\\}\\\\}`, 'g');\n      result = result.replace(pattern, value);\n    }\n  }\n\n  return result;\n}\n\n/**\n * Check if a skill's dependencies are satisfied\n */\nexport function checkDependencies(\n  skill: SkillTemplate,\n  config?: ResolvedCoreAIConfig | null\n): { satisfied: boolean; missing: SkillDependency[] } {\n  if (!skill.dependencies || skill.dependencies.length === 0) {\n    return { satisfied: true, missing: [] };\n  }\n\n  const missing: SkillDependency[] = [];\n\n  for (const dep of skill.dependencies) {\n    if (!dep.required) {\n      // Optional dependencies don't block skill generation\n      continue;\n    }\n\n    // Check if the integration is configured\n    let hasIntegration = false;\n\n    if (config?.integrations) {\n      switch (dep.type) {\n        case 'issue_tracker':\n          hasIntegration = !!config.integrations.issue_tracker;\n          break;\n        case 'git':\n          hasIntegration = !!config.integrations.git;\n          break;\n        case 'documentation':\n          hasIntegration = !!config.integrations.documentation;\n          break;\n        case 'state':\n          hasIntegration = !!config.integrations.state;\n          break;\n      }\n    }\n\n    if (!hasIntegration) {\n      missing.push(dep);\n    }\n  }\n\n  return {\n    satisfied: missing.length === 0,\n    missing,\n  };\n}\n\n/**\n * Generate skills from source files to Claude Code output format.\n *\n * Discovers skills from skills/<category>/<name>/SKILL.md and writes\n * compiled output to .claude/skills/<name>/SKILL.md (flattened).\n */\nexport function generateSkills(\n  config: ResolvedCoreAIConfig | undefined,\n  options: GenerateSkillsOptions = {}\n): GenerateSkillsResult {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const coreSkillsDir = options.coreSkillsDir ?? getCoreSkillsDir();\n  const outputDir = options.outputDir ?? join(projectRoot, '.claude', 'skills');\n  const includeCoreSkills = options.includeCoreSkills ?? true;\n  const overwrite = options.overwrite ?? true;\n\n  const result: GenerateSkillsResult = {\n    generated: [],\n    errors: [],\n    variables: {},\n  };\n\n  // Extract variables from config\n  const variables = extractVariables(config);\n\n  // Merge custom variables\n  if (options.variables) {\n    Object.assign(variables, options.variables);\n  }\n\n  result.variables = variables;\n\n  // Discover skill templates from source directory\n  let templates: SkillTemplate[] = [];\n\n  if (includeCoreSkills) {\n    const discovered = discoverSkills(coreSkillsDir);\n    templates.push(...discovered);\n  }\n\n  // Add custom templates if provided\n  if (options.customTemplatesDir && existsSync(options.customTemplatesDir)) {\n    const custom = discoverSkills(options.customTemplatesDir);\n    templates.push(...custom);\n  }\n\n  // Filter to specific skills if requested\n  if (options.skills && options.skills.length > 0) {\n    const skillsToInclude = options.skills;\n    templates = templates.filter((t) => skillsToInclude.includes(t.name));\n  }\n\n  // Generate each skill\n  for (const template of templates) {\n    try {\n      const generated = generateSkill(template, variables, config, outputDir, overwrite);\n      result.generated.push(generated);\n    } catch (error) {\n      result.errors.push({\n        name: template.name,\n        error: error instanceof Error ? error.message : String(error),\n      });\n    }\n  }\n\n  return result;\n}\n\n/**\n * Generate a single skill to .claude/skills/<name>/SKILL.md\n */\nfunction generateSkill(\n  template: SkillTemplate,\n  variables: SkillVariables,\n  config: ResolvedCoreAIConfig | undefined,\n  outputDir: string,\n  overwrite: boolean\n): GeneratedSkill {\n  // Output is directory-per-skill: .claude/skills/<name>/SKILL.md\n  const skillDir = join(outputDir, template.name);\n  const outputPath = join(skillDir, 'SKILL.md');\n\n  // Check if file exists and we shouldn't overwrite\n  if (existsSync(outputPath) && !overwrite) {\n    return {\n      name: template.name,\n      category: template.category,\n      outputPath,\n      action: 'skipped',\n      skipReason: 'File already exists',\n    };\n  }\n\n  // Check dependencies\n  const { satisfied, missing } = checkDependencies(template, config);\n\n  if (!satisfied) {\n    const missingTypes = missing.map((d) => d.type).join(', ');\n    return {\n      name: template.name,\n      category: template.category,\n      outputPath,\n      action: 'skipped',\n      skipReason: `Missing required integrations: ${missingTypes}`,\n    };\n  }\n\n  // Substitute variables in content\n  const content = substituteVariables(template.content, variables);\n\n  // Check if content changed (for update vs create)\n  const isUpdate = existsSync(outputPath);\n\n  // Ensure skill directory exists\n  if (!existsSync(skillDir)) {\n    mkdirSync(skillDir, { recursive: true });\n  }\n\n  // Write the skill file\n  writeFileSync(outputPath, content, 'utf-8');\n\n  return {\n    name: template.name,\n    category: template.category,\n    outputPath,\n    action: isUpdate ? 'updated' : 'created',\n  };\n}\n\n/**\n * Format skill generation result for display\n */\nexport function formatGenerateResult(result: GenerateSkillsResult): string {\n  const lines: string[] = [];\n\n  const created = result.generated.filter((g) => g.action === 'created');\n  const updated = result.generated.filter((g) => g.action === 'updated');\n  const skipped = result.generated.filter((g) => g.action === 'skipped');\n\n  if (created.length > 0) {\n    lines.push(`Created ${created.length} skill(s):`);\n    for (const skill of created) {\n      lines.push(`  \\u2713 ${skill.name}`);\n    }\n    lines.push('');\n  }\n\n  if (updated.length > 0) {\n    lines.push(`Updated ${updated.length} skill(s):`);\n    for (const skill of updated) {\n      lines.push(`  \\u2713 ${skill.name}`);\n    }\n    lines.push('');\n  }\n\n  if (skipped.length > 0) {\n    lines.push(`Skipped ${skipped.length} skill(s):`);\n    for (const skill of skipped) {\n      lines.push(`  - ${skill.name}: ${skill.skipReason}`);\n    }\n    lines.push('');\n  }\n\n  if (result.errors.length > 0) {\n    lines.push(`Failed to generate ${result.errors.length} skill(s):`);\n    for (const error of result.errors) {\n      lines.push(`  \\u2717 ${error.name}: ${error.error}`);\n    }\n    lines.push('');\n  }\n\n  const total = created.length + updated.length;\n  if (total > 0) {\n    lines.push(`Generated ${total} skill(s) to .claude/skills/`);\n  } else if (result.generated.length === 0 && result.errors.length === 0) {\n    lines.push('No skills to generate.');\n  }\n\n  return lines.join('\\n');\n}\n","/**\n * KnowledgeLibrary Manager\n *\n * Manages the KnowledgeLibrary directory structure and agent state.\n */\n\nimport {\n  existsSync,\n  mkdirSync,\n  writeFileSync,\n  readFileSync,\n  readdirSync,\n  renameSync,\n  statSync,\n} from 'fs';\nimport { join, basename } from 'path';\nimport type {\n  AgentDirectories,\n  AgentKnowledgeState,\n  InitKnowledgeLibraryOptions,\n  InitKnowledgeLibraryResult,\n  KnowledgeLibraryState,\n  Message,\n  MessageMetadata,\n  ReadMessagesOptions,\n  WriteMessageOptions,\n  AgentContext,\n} from './types.js';\n\n/**\n * Default KnowledgeLibrary base path\n */\nexport const DEFAULT_KNOWLEDGE_LIBRARY_PATH = 'KnowledgeLibrary';\n\n/**\n * Standard files in a KnowledgeLibrary\n */\nexport const STANDARD_FILES = {\n  context: 'context.txt',\n  architecture: 'architecture.txt',\n  prd: 'prd.txt',\n} as const;\n\n/**\n * Standard directories for each agent\n */\nexport const AGENT_DIRECTORIES = [\n  'inbox',\n  'inbox/processed',\n  'outbox',\n  'context',\n  'control',\n  'history',\n  'tech',\n] as const;\n\n/**\n * Standard files in an agent's control directory\n */\nexport const CONTROL_FILES = {\n  objectives: 'objectives.txt',\n  decisions: 'decisions.txt',\n  dependencies: 'dependencies.txt',\n} as const;\n\n/**\n * Get the path to an agent's directories\n */\nexport function getAgentDirectories(basePath: string, agentName: string): AgentDirectories {\n  const root = join(basePath, agentName);\n  return {\n    root,\n    inbox: join(root, 'inbox'),\n    inboxProcessed: join(root, 'inbox', 'processed'),\n    outbox: join(root, 'outbox'),\n    context: join(root, 'context'),\n    control: join(root, 'control'),\n    history: join(root, 'history'),\n    tech: join(root, 'tech'),\n  };\n}\n\n/**\n * Initialize the KnowledgeLibrary base structure\n */\nexport function initKnowledgeLibrary(\n  options: InitKnowledgeLibraryOptions = {}\n): InitKnowledgeLibraryResult {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const createDefaults = options.createDefaults ?? true;\n\n  const createdDirs: string[] = [];\n  const createdFiles: string[] = [];\n\n  try {\n    // Create base directory\n    if (!existsSync(basePath)) {\n      mkdirSync(basePath, { recursive: true });\n      createdDirs.push(basePath);\n    }\n\n    // Create default global files if requested\n    if (createDefaults) {\n      // context.txt\n      const contextPath = join(basePath, STANDARD_FILES.context);\n      if (!existsSync(contextPath)) {\n        writeFileSync(\n          contextPath,\n          `# Project Context\n\n## Current Sprint\n- Sprint: [Sprint name/number]\n- Goals: [Sprint goals]\n- Deadline: [Sprint deadline]\n\n## Priorities\n1. [Priority 1]\n2. [Priority 2]\n3. [Priority 3]\n\n## Notes\n[Project-wide notes and context]\n`,\n          'utf-8'\n        );\n        createdFiles.push(contextPath);\n      }\n\n      // architecture.txt\n      const architecturePath = join(basePath, STANDARD_FILES.architecture);\n      if (!existsSync(architecturePath)) {\n        writeFileSync(\n          architecturePath,\n          `# Architecture Notes\n\n## Technical Decisions\n[Record major technical decisions here]\n\n## System Overview\n[High-level system architecture]\n\n## Key Components\n[Important system components]\n`,\n          'utf-8'\n        );\n        createdFiles.push(architecturePath);\n      }\n\n      // prd.txt\n      const prdPath = join(basePath, STANDARD_FILES.prd);\n      if (!existsSync(prdPath)) {\n        writeFileSync(\n          prdPath,\n          `# Product Requirements Document\n\n## Overview\n[Product overview]\n\n## Goals\n[Product goals]\n\n## Features\n[Feature list]\n\n## Requirements\n[Detailed requirements]\n`,\n          'utf-8'\n        );\n        createdFiles.push(prdPath);\n      }\n    }\n\n    return {\n      success: true,\n      createdDirs,\n      createdFiles,\n    };\n  } catch (error) {\n    return {\n      success: false,\n      createdDirs,\n      createdFiles,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  }\n}\n\n/**\n * Initialize an agent's KnowledgeLibrary directories\n */\nexport function initAgentKnowledgeLibrary(\n  agentName: string,\n  options: InitKnowledgeLibraryOptions = {}\n): InitKnowledgeLibraryResult {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const createDefaults = options.createDefaults ?? true;\n\n  const createdDirs: string[] = [];\n  const createdFiles: string[] = [];\n\n  try {\n    // Ensure base KnowledgeLibrary exists\n    if (!existsSync(basePath)) {\n      const baseResult = initKnowledgeLibrary(options);\n      if (!baseResult.success) {\n        return baseResult;\n      }\n      createdDirs.push(...baseResult.createdDirs);\n      createdFiles.push(...baseResult.createdFiles);\n    }\n\n    // Get agent directories\n    const dirs = getAgentDirectories(basePath, agentName);\n\n    // Create all agent directories\n    for (const dir of AGENT_DIRECTORIES) {\n      const dirPath = join(dirs.root, dir);\n      if (!existsSync(dirPath)) {\n        mkdirSync(dirPath, { recursive: true });\n        createdDirs.push(dirPath);\n      }\n    }\n\n    // Create default files if requested\n    if (createDefaults) {\n      // context/current.txt\n      const currentContextPath = join(dirs.context, 'current.txt');\n      if (!existsSync(currentContextPath)) {\n        writeFileSync(\n          currentContextPath,\n          `# ${agentName} Current Context\n\n## Status\n- State: idle\n- Current Task: None\n- Last Updated: ${new Date().toISOString()}\n\n## Notes\n[Agent-specific context notes]\n`,\n          'utf-8'\n        );\n        createdFiles.push(currentContextPath);\n      }\n\n      // control/objectives.txt\n      const objectivesPath = join(dirs.control, CONTROL_FILES.objectives);\n      if (!existsSync(objectivesPath)) {\n        writeFileSync(\n          objectivesPath,\n          `# ${agentName} Objectives\n\n## Current Objectives\n[None]\n\n## Success Criteria\n[Define success criteria for objectives]\n`,\n          'utf-8'\n        );\n        createdFiles.push(objectivesPath);\n      }\n\n      // control/decisions.txt\n      const decisionsPath = join(dirs.control, CONTROL_FILES.decisions);\n      if (!existsSync(decisionsPath)) {\n        writeFileSync(\n          decisionsPath,\n          `# ${agentName} Decision Log\n\n## Decisions\n[Record important decisions here]\n\nFormat:\n- Date: YYYY-MM-DD\n- Decision: [What was decided]\n- Reasoning: [Why]\n- Related: [Ticket or task reference]\n`,\n          'utf-8'\n        );\n        createdFiles.push(decisionsPath);\n      }\n\n      // control/dependencies.txt\n      const dependenciesPath = join(dirs.control, CONTROL_FILES.dependencies);\n      if (!existsSync(dependenciesPath)) {\n        writeFileSync(\n          dependenciesPath,\n          `# ${agentName} Dependencies\n\n## Blocked By\n[Tasks/agents blocking this agent]\n\n## Blocking\n[Tasks/agents this agent is blocking]\n\nLast Updated: ${new Date().toISOString()}\n`,\n          'utf-8'\n        );\n        createdFiles.push(dependenciesPath);\n      }\n    }\n\n    return {\n      success: true,\n      createdDirs,\n      createdFiles,\n    };\n  } catch (error) {\n    return {\n      success: false,\n      createdDirs,\n      createdFiles,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  }\n}\n\n/**\n * Check if a KnowledgeLibrary exists for an agent\n */\nexport function agentKnowledgeLibraryExists(\n  agentName: string,\n  options: { projectRoot?: string; basePath?: string } = {}\n): boolean {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const agentRoot = join(basePath, agentName);\n\n  return existsSync(agentRoot) && existsSync(join(agentRoot, 'inbox'));\n}\n\n/**\n * Get the KnowledgeLibrary state for an agent\n */\nexport function getAgentKnowledgeState(\n  agentName: string,\n  options: { projectRoot?: string; basePath?: string } = {}\n): AgentKnowledgeState {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const dirs = getAgentDirectories(basePath, agentName);\n\n  const initialized = agentKnowledgeLibraryExists(agentName, options);\n\n  // Get pending messages\n  const pendingMessages = initialized ? readInboxMessages(agentName, options) : [];\n\n  // Get context\n  let context: AgentContext | undefined;\n  const currentContextPath = join(dirs.context, 'current.txt');\n  if (existsSync(currentContextPath)) {\n    const content = readFileSync(currentContextPath, 'utf-8');\n    context = parseContextFile(content);\n  }\n\n  const state: AgentKnowledgeState = {\n    agentName,\n    directories: dirs,\n    pendingMessages,\n    initialized,\n  };\n\n  if (context) {\n    state.context = context;\n  }\n\n  return state;\n}\n\n/**\n * Parse a context file into AgentContext\n */\nfunction parseContextFile(content: string): AgentContext {\n  const context: AgentContext = {\n    lastUpdated: new Date(),\n  };\n\n  // Simple parsing - look for key patterns\n  const statusMatch = content.match(/State:\\s*(.+)/i);\n  if (statusMatch && statusMatch[1]) {\n    context.status = statusMatch[1].trim();\n  }\n\n  const taskMatch = content.match(/Current Task:\\s*(.+)/i);\n  if (taskMatch && taskMatch[1] && taskMatch[1].trim() !== 'None') {\n    context.currentTask = taskMatch[1].trim();\n  }\n\n  const ticketMatch = content.match(/Current Ticket:\\s*([A-Z]+-\\d+)/i);\n  if (ticketMatch && ticketMatch[1]) {\n    context.currentTicket = ticketMatch[1];\n  }\n\n  const updatedMatch = content.match(/Last Updated:\\s*(.+)/i);\n  if (updatedMatch) {\n    const dateStr = updatedMatch[1]?.trim();\n    if (dateStr) {\n      const parsed = new Date(dateStr);\n      if (!isNaN(parsed.getTime())) {\n        context.lastUpdated = parsed;\n      }\n    }\n  }\n\n  return context;\n}\n\n/**\n * Generate a message filename\n */\nexport function generateMessageFilename(from: string, subject: string): string {\n  const now = new Date();\n  const timestamp = now.toISOString().replace(/[-:T]/g, '').slice(0, 12); // YYYYMMDDHHMM\n  const sanitizedSubject = subject\n    .toLowerCase()\n    .replace(/[^a-z0-9]+/g, '-')\n    .slice(0, 30);\n  return `${timestamp}-${from}-${sanitizedSubject}.md`;\n}\n\n/**\n * Parse message frontmatter\n */\nfunction parseMessageFrontmatter(content: string): {\n  metadata: Partial<MessageMetadata>;\n  body: string;\n} {\n  const match = content.match(/^---\\r?\\n([\\s\\S]*?)\\r?\\n---\\r?\\n([\\s\\S]*)$/);\n\n  if (!match) {\n    return { metadata: {}, body: content };\n  }\n\n  const frontmatter = match[1] ?? '';\n  const body = match[2] ?? '';\n  const metadata: Partial<MessageMetadata> = {};\n\n  for (const line of frontmatter.split(/\\r?\\n/)) {\n    const colonIndex = line.indexOf(':');\n    if (colonIndex === -1) continue;\n\n    const key = line.slice(0, colonIndex).trim();\n    const value = line.slice(colonIndex + 1).trim();\n\n    switch (key) {\n      case 'type':\n        metadata.type = value as MessageMetadata['type'];\n        break;\n      case 'from':\n        metadata.from = value;\n        break;\n      case 'to':\n        metadata.to = value;\n        break;\n      case 'date':\n        metadata.date = new Date(value);\n        break;\n      case 'ticket':\n        metadata.ticket = value;\n        break;\n      case 'priority':\n        if (value === 'P0' || value === 'P1' || value === 'P2' || value === 'P3') {\n          metadata.priority = value;\n        }\n        break;\n      case 'subject':\n        metadata.subject = value;\n        break;\n    }\n  }\n\n  return { metadata, body };\n}\n\n/**\n * Read inbox messages for an agent\n */\nexport function readInboxMessages(\n  agentName: string,\n  options: { projectRoot?: string; basePath?: string } & ReadMessagesOptions = {}\n): Message[] {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const dirs = getAgentDirectories(basePath, agentName);\n\n  const messages: Message[] = [];\n\n  // Read inbox\n  if (existsSync(dirs.inbox)) {\n    const files = readdirSync(dirs.inbox).filter(\n      (f) => f.endsWith('.md') && statSync(join(dirs.inbox, f)).isFile()\n    );\n\n    for (const file of files) {\n      const filePath = join(dirs.inbox, file);\n      const rawContent = readFileSync(filePath, 'utf-8');\n      const { metadata, body } = parseMessageFrontmatter(rawContent);\n\n      // Apply filters\n      if (options.type && metadata.type !== options.type) continue;\n      if (options.from && metadata.from !== options.from) continue;\n      if (options.priority && metadata.priority !== options.priority) continue;\n\n      messages.push({\n        filename: file,\n        path: filePath,\n        metadata: metadata as MessageMetadata,\n        rawContent,\n        body,\n      });\n    }\n  }\n\n  // Include processed if requested\n  if (options.includeProcessed && existsSync(dirs.inboxProcessed)) {\n    const files = readdirSync(dirs.inboxProcessed).filter(\n      (f) => f.endsWith('.md') && statSync(join(dirs.inboxProcessed, f)).isFile()\n    );\n\n    for (const file of files) {\n      const filePath = join(dirs.inboxProcessed, file);\n      const rawContent = readFileSync(filePath, 'utf-8');\n      const { metadata, body } = parseMessageFrontmatter(rawContent);\n\n      // Apply filters\n      if (options.type && metadata.type !== options.type) continue;\n      if (options.from && metadata.from !== options.from) continue;\n      if (options.priority && metadata.priority !== options.priority) continue;\n\n      messages.push({\n        filename: file,\n        path: filePath,\n        metadata: metadata as MessageMetadata,\n        rawContent,\n        body,\n      });\n    }\n  }\n\n  // Sort by date (newest first)\n  messages.sort((a, b) => {\n    const dateA = a.metadata.date?.getTime() ?? 0;\n    const dateB = b.metadata.date?.getTime() ?? 0;\n    return dateB - dateA;\n  });\n\n  // Apply limit\n  if (options.limit && messages.length > options.limit) {\n    return messages.slice(0, options.limit);\n  }\n\n  return messages;\n}\n\n/**\n * Write a message to an agent's inbox\n */\nexport function writeInboxMessage(\n  options: WriteMessageOptions & { projectRoot?: string; basePath?: string }\n): { success: boolean; path?: string; error?: string } {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const dirs = getAgentDirectories(basePath, options.to);\n\n  try {\n    // Ensure agent inbox exists\n    if (!existsSync(dirs.inbox)) {\n      mkdirSync(dirs.inbox, { recursive: true });\n    }\n\n    // Generate filename\n    const filename = generateMessageFilename(options.from, options.subject);\n    const filePath = join(dirs.inbox, filename);\n\n    // Format message\n    const now = new Date();\n    const content = formatMessage(options, now);\n\n    // Write file\n    writeFileSync(filePath, content, 'utf-8');\n\n    // Also copy to sender's outbox\n    const senderDirs = getAgentDirectories(basePath, options.from);\n    if (existsSync(senderDirs.outbox)) {\n      writeFileSync(join(senderDirs.outbox, filename), content, 'utf-8');\n    }\n\n    return { success: true, path: filePath };\n  } catch (error) {\n    return {\n      success: false,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  }\n}\n\n/**\n * Format a message with frontmatter\n */\nfunction formatMessage(options: WriteMessageOptions, date: Date): string {\n  let frontmatter = `---\ntype: ${options.type}\nfrom: ${options.from}\nto: ${options.to}\ndate: ${date.toISOString().slice(0, 16).replace('T', ' ')}`;\n\n  if (options.ticket) {\n    frontmatter += `\\nticket: ${options.ticket}`;\n  }\n\n  if (options.priority) {\n    frontmatter += `\\npriority: ${options.priority}`;\n  }\n\n  frontmatter += `\\nsubject: ${options.subject}`;\n\n  frontmatter += `\\n---\n\n## ${options.subject}\n\n${options.body}`;\n\n  return frontmatter;\n}\n\n/**\n * Mark a message as processed (move to processed folder)\n */\nexport function markMessageProcessed(\n  agentName: string,\n  messageFilename: string,\n  options: { projectRoot?: string; basePath?: string } = {}\n): { success: boolean; error?: string } {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const dirs = getAgentDirectories(basePath, agentName);\n\n  const sourcePath = join(dirs.inbox, messageFilename);\n  const destPath = join(dirs.inboxProcessed, messageFilename);\n\n  try {\n    if (!existsSync(sourcePath)) {\n      return { success: false, error: `Message not found: ${messageFilename}` };\n    }\n\n    if (!existsSync(dirs.inboxProcessed)) {\n      mkdirSync(dirs.inboxProcessed, { recursive: true });\n    }\n\n    renameSync(sourcePath, destPath);\n    return { success: true };\n  } catch (error) {\n    return {\n      success: false,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  }\n}\n\n/**\n * Get global KnowledgeLibrary state\n */\nexport function getKnowledgeLibraryState(\n  options: { projectRoot?: string; basePath?: string } = {}\n): KnowledgeLibraryState | null {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n\n  if (!existsSync(basePath)) {\n    return null;\n  }\n\n  // Get list of agents\n  const agents: string[] = [];\n  const entries = readdirSync(basePath);\n  for (const entry of entries) {\n    const entryPath = join(basePath, entry);\n    if (statSync(entryPath).isDirectory() && existsSync(join(entryPath, 'inbox'))) {\n      agents.push(entry);\n    }\n  }\n\n  return {\n    basePath,\n    contextPath: join(basePath, STANDARD_FILES.context),\n    architecturePath: join(basePath, STANDARD_FILES.architecture),\n    prdPath: join(basePath, STANDARD_FILES.prd),\n    agents,\n  };\n}\n\n/**\n * Update agent context\n */\nexport function updateAgentContext(\n  agentName: string,\n  context: Partial<AgentContext>,\n  options: { projectRoot?: string; basePath?: string } = {}\n): { success: boolean; error?: string } {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const dirs = getAgentDirectories(basePath, agentName);\n  const contextPath = join(dirs.context, 'current.txt');\n\n  try {\n    const now = new Date();\n    const content = `# ${agentName} Current Context\n\n## Status\n- State: ${context.status ?? 'idle'}\n- Current Task: ${context.currentTask ?? 'None'}\n${context.currentTicket ? `- Current Ticket: ${context.currentTicket}` : ''}- Last Updated: ${now.toISOString()}\n\n## Notes\n${context.notes ?? '[Agent-specific context notes]'}\n`;\n\n    if (!existsSync(dirs.context)) {\n      mkdirSync(dirs.context, { recursive: true });\n    }\n\n    writeFileSync(contextPath, content, 'utf-8');\n    return { success: true };\n  } catch (error) {\n    return {\n      success: false,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  }\n}\n\n/**\n * Format KnowledgeLibrary state for display\n */\nexport function formatKnowledgeLibraryState(state: KnowledgeLibraryState | null): string {\n  if (!state) {\n    return 'KnowledgeLibrary not initialized.';\n  }\n\n  const lines: string[] = [];\n  lines.push(`KnowledgeLibrary: ${state.basePath}\\n`);\n\n  lines.push('Global files:');\n  lines.push(`  - ${basename(state.contextPath)}`);\n  lines.push(`  - ${basename(state.architecturePath)}`);\n  lines.push(`  - ${basename(state.prdPath)}`);\n  lines.push('');\n\n  if (state.agents.length > 0) {\n    lines.push(`Agents (${state.agents.length}):`);\n    for (const agent of state.agents) {\n      lines.push(`  - ${agent}`);\n    }\n  } else {\n    lines.push('No agents initialized.');\n  }\n\n  return lines.join('\\n');\n}\n\n/**\n * Format agent knowledge state for display\n */\nexport function formatAgentKnowledgeState(state: AgentKnowledgeState): string {\n  const lines: string[] = [];\n\n  lines.push(`Agent: ${state.agentName}`);\n  lines.push(`Status: ${state.initialized ? 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dirname(fileURLToPath(import.meta.url));\n  while (dir !== dirname(dir)) {\n    const pkgPath = join(dir, 'package.json');\n    try {\n      const content = readFileSync(pkgPath, 'utf-8');\n      const pkg = JSON.parse(content);\n      if (pkg.name === '@deimoscloud/coreai') {\n        return content;\n      }\n    } catch {\n      // Continue searching\n    }\n    dir = dirname(dir);\n  }\n  return '{\"version\": \"unknown\"}';\n}\n\nconst packageJson = JSON.parse(findPackageJson());\nexport const VERSION: string = packageJson.version;\n\n// Configuration\nexport {\n  loadConfig,\n  loadConfigFromFile,\n  findConfigFile,\n  configExists,\n  getConfigPath,\n  ConfigError,\n} from './config/index.js';\n\nexport type {\n  CoreAIConfig,\n  ResolvedCoreAIConfig,\n  ProjectConfig,\n  TeamConfig,\n  IntegrationsConfig,\n  QualityGatesConfig,\n  CacheConfig,\n  ConfigErrorCode,\n} from './config/index.js';\n\n// Agents\nexport {\n  loadAgentFromFile,\n  loadAgentsFromDirectory,\n  parseAgentYaml,\n  validateAgentDefinition,\n  getRoleFromFilename,\n  AgentError,\n  resolveString,\n  resolveObject,\n  resolveAgentDefinition,\n  hasVariables,\n  extractVariables,\n  ResolutionError,\n  generateAgentMarkdown,\n  compileAgent,\n  compileAgents,\n  loadAllAgents,\n  filterAgentsByTeam,\n  getCoreAgentsDir,\n} from './agents/index.js';\n\nexport type {\n  AgentDefinition,\n  ResolvedAgentDefinition,\n  AgentType,\n  WorkflowType,\n  AgentMetadata,\n  AgentSource,\n  AgentErrorCode,\n  ResolutionContext,\n  ResolutionOptions,\n  CompileOptions,\n  CompileResult,\n} from './agents/index.js';\n\n// Adapters\nexport {\n  AdapterFactory,\n  createAdapterFactory,\n  createAdapterInfo,\n  AdapterError,\n} from './adapters/index.js';\n\nexport type {\n  AdapterType,\n  AdapterImplementation,\n  AdapterInfo,\n  AdapterFactoryOptions,\n  AdapterErrorCode,\n  BaseAdapter,\n  IssueTrackerAdapter,\n  GitProviderAdapter,\n  DocumentationProviderAdapter,\n  StateProviderAdapter,\n  Adapter,\n  Issue,\n  IssueQuery,\n  IssueStatus,\n  CreateIssueData,\n  UpdateIssueData,\n  PullRequest,\n  PullRequestQuery,\n  PullRequestStatus,\n  CreatePullRequestData,\n  Review,\n  CreateReviewData,\n  ReviewDecision,\n  ReviewComment,\n  DocumentationPage,\n  DocumentationQuery,\n  StateEntry,\n  StateOptions,\n} from './adapters/index.js';\n\n// Cache\nexport {\n  CacheError,\n  CACHE_PATHS,\n  DEFAULT_CACHE_CONFIG,\n  FileCacheProvider,\n  createFileCacheProvider,\n  FileCacheManager,\n  createCacheManager,\n} from './cache/index.js';\n\nexport type {\n  CacheSource,\n  CacheStatus,\n  CacheMetadata,\n  CacheEntry,\n  CacheOptions,\n  CacheListOptions,\n  CacheStats,\n  SyncResult,\n  CacheErrorCode,\n  CacheProvider,\n  RemoteFetcher,\n  FetchOptions,\n  CacheManager,\n  SyncOptions,\n  FileCacheProviderOptions,\n  CacheManagerOptions,\n} from './cache/index.js';\n\n// Context\nexport { ContextLoader, createContextLoader } from './context/index.js';\n\nexport type {\n  ContextSource,\n  ContextLoadResult,\n  ContextLoaderOptions,\n  LoadOptions,\n} from './context/index.js';\n\n// Commands\nexport {\n  CommandRegistry,\n  createCommandRegistry,\n  getGlobalRegistry,\n  resetGlobalRegistry,\n  createCommandContext,\n  cleanupContext,\n  withContext,\n  loadCommandFromFile,\n  loadCommandsFromDirectory,\n  loadCoreAICommands,\n  loadAllCommands,\n  runCommand,\n  executeWithDegradation,\n  createDegradingHandler,\n  StepTracker,\n} from './commands/index.js';\n\nexport type {\n  CommandCategory,\n  IntegrationDependency,\n  CommandMetadata,\n  CommandContext,\n  BaseCommandOptions,\n  CommandResult,\n  CommandHandler,\n  CommandDefinition,\n  CommandOptionDefinition,\n  CommandArgumentDefinition,\n  MarkdownCommand,\n  RegistryEntry,\n  CommandLoaderOptions,\n  CommandLoadResult,\n  CreateContextOptions,\n  RunCommandOptions,\n} from './commands/index.js';\n\n// Skills\nexport {\n  getCoreSkillsDir,\n  discoverSkills,\n  parseSkillFile,\n  extractVariables as extractSkillVariables,\n  substituteVariables,\n  checkDependencies,\n  generateSkills,\n  formatGenerateResult,\n} from './skills/index.js';\n\nexport type {\n  SkillTemplate,\n  SkillVariables,\n  SkillCategory,\n  SkillDependency,\n  GenerateSkillsOptions,\n  GenerateSkillsResult,\n  GeneratedSkill,\n  SkillError,\n} from './skills/index.js';\n\n// KnowledgeLibrary\nexport {\n  DEFAULT_KNOWLEDGE_LIBRARY_PATH,\n  STANDARD_FILES,\n  AGENT_DIRECTORIES,\n  CONTROL_FILES,\n  getAgentDirectories,\n  initKnowledgeLibrary,\n  initAgentKnowledgeLibrary,\n  agentKnowledgeLibraryExists,\n  getAgentKnowledgeState,\n  generateMessageFilename,\n  readInboxMessages,\n  writeInboxMessage,\n  markMessageProcessed,\n  getKnowledgeLibraryState,\n  updateAgentContext,\n  formatKnowledgeLibraryState,\n  formatAgentKnowledgeState,\n} from './knowledge-library/index.js';\n\nexport type {\n  MessageType,\n  MessagePriority,\n  MessageMetadata,\n  Message,\n  AgentContext,\n  Objective,\n  Decision,\n  Dependency,\n  AgentControl,\n  AgentDirectories,\n  AgentKnowledgeState,\n  InitKnowledgeLibraryOptions,\n  InitKnowledgeLibraryResult,\n  ReadMessagesOptions,\n  WriteMessageOptions,\n  KnowledgeLibraryState,\n} from './knowledge-library/index.js';\n","/**\n * Configuration Loader\n *\n * Handles config file discovery, parsing, validation, and defaults.\n */\n\nimport { existsSync, readFileSync } from 'fs';\nimport { dirname, join, resolve } from 'path';\nimport { parse as parseYaml } from 'yaml';\nimport Ajv, { type ErrorObject } from 'ajv';\nimport addFormats from 'ajv-formats';\nimport type { CoreAIConfig, ResolvedCoreAIConfig } from './types.js';\n\n// Import schema as JSON\nimport { createRequire } from 'module';\nconst require = createRequire(import.meta.url);\nconst configSchema = require('../../schemas/coreai.config.schema.json') as object;\n\nconst CONFIG_FILE_NAME = 'coreai.config.yaml';\nconst CONFIG_FILE_NAMES = [CONFIG_FILE_NAME, 'coreai.config.yml'];\n\nexport class ConfigError extends Error {\n  constructor(\n    message: string,\n    public readonly code: ConfigErrorCode,\n    public readonly details?: unknown\n  ) {\n    super(message);\n    this.name = 'ConfigError';\n  }\n}\n\nexport type ConfigErrorCode = 'NOT_FOUND' | 'PARSE_ERROR' | 'VALIDATION_ERROR' | 'READ_ERROR';\n\n/**\n * Default team agents\n */\nconst DEFAULT_AGENTS = [\n  'engineering-manager',\n];\n\n/**\n * Find the config file by walking up the directory tree\n */\nexport function findConfigFile(startDir: string = process.cwd()): string | null {\n  let currentDir = resolve(startDir);\n  const root = dirname(currentDir);\n\n  while (currentDir !== root) {\n    for (const fileName of CONFIG_FILE_NAMES) {\n      const configPath = join(currentDir, fileName);\n      if (existsSync(configPath)) {\n        return configPath;\n      }\n    }\n\n    const parentDir = dirname(currentDir);\n    if (parentDir === currentDir) {\n      break;\n    }\n    currentDir = parentDir;\n  }\n\n  // Check root directory\n  for (const fileName of CONFIG_FILE_NAMES) {\n    const configPath = join(currentDir, fileName);\n    if (existsSync(configPath)) {\n      return configPath;\n    }\n  }\n\n  return null;\n}\n\n/**\n * Parse YAML content into an object\n */\nexport function parseConfig(content: string, filePath?: string): unknown {\n  try {\n    return parseYaml(content);\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown parse error';\n    throw new ConfigError(\n      `Failed to parse YAML${filePath ? ` in ${filePath}` : ''}: ${message}`,\n      'PARSE_ERROR',\n      error\n    );\n  }\n}\n\n/**\n * Validate config against JSON schema\n */\nexport function validateConfig(config: unknown): CoreAIConfig {\n  const ajv = new Ajv.default({ allErrors: true, strict: false });\n  addFormats.default(ajv);\n\n  const validate = ajv.compile<CoreAIConfig>(configSchema);\n  const valid = validate(config);\n\n  if (!valid) {\n    const errors: ErrorObject[] = validate.errors ?? [];\n    const errorMessages = errors.map((err: ErrorObject) => {\n      const path = err.instancePath || 'root';\n      return `${path}: ${err.message ?? 'unknown error'}`;\n    });\n\n    throw new ConfigError(\n      `Configuration validation failed:\\n  - ${errorMessages.join('\\n  - ')}`,\n      'VALIDATION_ERROR',\n      errors\n    );\n  }\n\n  return config as CoreAIConfig;\n}\n\n/**\n * Apply default values to config\n */\nexport function applyDefaults(config: CoreAIConfig): ResolvedCoreAIConfig {\n  const project: ResolvedCoreAIConfig['project'] = {\n    name: config.project?.name ?? 'unnamed',\n    root: config.project?.root ?? process.cwd(),\n  };\n  if (config.project?.description) {\n    project.description = config.project.description;\n  }\n  return {\n    ...config,\n    project,\n    team: {\n      agents: config.team?.agents ?? DEFAULT_AGENTS,\n    },\n  };\n}\n\n/**\n * Load and validate configuration from a file path\n */\nexport function loadConfigFromFile(filePath: string): ResolvedCoreAIConfig {\n  let content: string;\n\n  try {\n    content = readFileSync(filePath, 'utf-8');\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown read error';\n    throw new ConfigError(\n      `Failed to read config file ${filePath}: ${message}`,\n      'READ_ERROR',\n      error\n    );\n  }\n\n  const parsed = parseConfig(content, filePath);\n  const validated = validateConfig(parsed);\n  return applyDefaults(validated);\n}\n\n/**\n * Load configuration by searching for config file\n */\nexport function loadConfig(startDir?: string): ResolvedCoreAIConfig {\n  const configPath = findConfigFile(startDir);\n\n  if (!configPath) {\n    throw new ConfigError(\n      `Configuration file not found. Create a ${CONFIG_FILE_NAME} file or run 'coreai init'.`,\n      'NOT_FOUND'\n    );\n  }\n\n  return loadConfigFromFile(configPath);\n}\n\n/**\n * Check if a config file exists in the given directory or parent directories\n */\nexport function configExists(startDir?: string): boolean {\n  return findConfigFile(startDir) !== null;\n}\n\n/**\n * Get the path to the config file, or null if not found\n */\nexport function getConfigPath(startDir?: string): string | null {\n  return findConfigFile(startDir);\n}\n","/**\n * CoreAI Agent Types\n *\n * TypeScript types corresponding to the JSON schema at schemas/agent.schema.json\n */\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport type AgentType = 'ic-engineer' | 'manager' | 'specialist' | 'coordinator';\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport type WorkflowType =\n  | 'ticket-implementation'\n  | 'bug-investigation'\n  | 'code-review'\n  | 'planning-estimation'\n  | 'product-planning';\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentExpertise {\n  primary?: string[];\n  tech_stack?: string;\n  [key: string]: unknown;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentPrinciples {\n  code_quality?: string[];\n  testing?: string[];\n  security?: string[];\n  performance?: string[];\n  [key: string]: string[] | undefined;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentBehaviors {\n  workflow?: WorkflowType;\n  quality_gates?: string;\n  [key: string]: unknown;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentContextSources {\n  shared?: string[];\n  personal?: string[];\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentKnowledgeLibraryControl {\n  objectives?: string;\n  decisions?: string;\n  dependencies?: string;\n  index?: string;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentKnowledgeLibraryShared {\n  context?: string;\n  architecture?: string;\n  prd?: string;\n  remote?: string[];\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentKnowledgeLibraryPersonal {\n  context?: string;\n  history?: string;\n  inbox?: string;\n  outbox?: string;\n  tech?: string;\n  control?: AgentKnowledgeLibraryControl;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentKnowledgeLibrary {\n  shared?: AgentKnowledgeLibraryShared;\n  personal?: AgentKnowledgeLibraryPersonal;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentCommunication {\n  inbox?: string;\n  outbox?: string;\n  message_format?: string;\n  outbox_format?: string;\n  processed_dir?: string;\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentStartupProtocol {\n  first_session?: string[];\n  subsequent?: string[];\n}\n\n/** @deprecated Used only for YAML backward compatibility. Will be removed when YAML support is dropped. */\nexport interface AgentProtocols {\n  startup?: AgentStartupProtocol;\n  completion?: string[];\n}\n\n/**\n * Default Claude Code tools available to agents\n */\nexport const DEFAULT_AGENT_TOOLS = ['Read', 'Write', 'Edit', 'Bash', 'Glob', 'Grep'] as const;\n\n/**\n * Agent definition.\n * For MD agents: role, type, display_name, description, tools are used.\n * For deprecated YAML agents: all fields may be populated.\n */\nexport interface AgentDefinition {\n  role: string;\n  type: AgentType;\n  display_name: string;\n  description: string;\n  /** @deprecated YAML-only. In MD agents, responsibilities are in the template body. */\n  responsibilities?: string[];\n  /** @deprecated YAML-only. In MD agents, expertise is in the template body. */\n  expertise?: AgentExpertise;\n  /** @deprecated YAML-only. In MD agents, skills are in the template body. */\n  skills?: string[];\n  /** @deprecated YAML-only. In MD agents, principles are in the template body. */\n  principles?: AgentPrinciples;\n  /** @deprecated YAML-only. In MD agents, behaviors are in the template body. */\n  behaviors?: AgentBehaviors;\n  /** @deprecated YAML-only. Use knowledge_library or MD template body instead. */\n  context_sources?: AgentContextSources;\n  /** @deprecated YAML-only. In MD agents, knowledge library structure is in the template body. */\n  knowledge_library?: AgentKnowledgeLibrary;\n  /** @deprecated YAML-only. In MD agents, communication details are in the template body. */\n  communication?: AgentCommunication;\n  /** @deprecated YAML-only. In MD agents, protocols are in the template body. */\n  protocols?: AgentProtocols;\n  /**\n   * Claude Code tools available to this agent.\n   * If not specified, defaults to: Read, Write, Edit, Bash, Glob, Grep\n   */\n  tools?: string[];\n}\n\n/**\n * @deprecated Used only for YAML backward compatibility.\n */\nexport interface ResolvedAgentDefinition extends AgentDefinition {\n  expertise?: AgentExpertise & {\n    tech_stack?: Record<string, unknown>;\n  };\n  behaviors?: AgentBehaviors & {\n    quality_gates?: Record<string, unknown>;\n  };\n}\n\n/**\n * Agent source location\n */\nexport type AgentSource = 'core' | 'custom' | 'override';\n\n/**\n * Agent metadata including source information\n */\nexport interface AgentMetadata {\n  definition: AgentDefinition;\n  source: AgentSource;\n  filePath: string;\n}\n","/**\n * Agent Loader\n *\n * Handles loading agent definitions from Markdown templates (primary)\n * and YAML files (deprecated, backward compatible).\n */\n\nimport { existsSync, readdirSync, readFileSync } from 'fs';\nimport { basename, extname, join } from 'path';\nimport { parse as parseYaml } from 'yaml';\nimport Ajv, { type ErrorObject } from 'ajv';\nimport type { AgentDefinition, AgentMetadata, AgentSource } from './types.js';\n\n// Import schema as JSON (for deprecated YAML validation)\nimport { createRequire } from 'module';\nconst require = createRequire(import.meta.url);\nconst agentSchema = require('../../schemas/agent.schema.json') as object;\n\nexport class AgentError extends Error {\n  constructor(\n    message: string,\n    public readonly code: AgentErrorCode,\n    public readonly details?: unknown\n  ) {\n    super(message);\n    this.name = 'AgentError';\n  }\n}\n\nexport type AgentErrorCode = 'NOT_FOUND' | 'PARSE_ERROR' | 'VALIDATION_ERROR' | 'READ_ERROR';\n\n/**\n * Extract YAML frontmatter from a Markdown file.\n * Returns the parsed frontmatter object and the body content.\n */\nexport function extractFrontmatter(content: string): { frontmatter: Record<string, unknown>; body: string } {\n  const match = content.match(/^---\\n([\\s\\S]*?)\\n---\\n?([\\s\\S]*)$/);\n  if (!match) {\n    throw new AgentError(\n      'No YAML frontmatter found. Agent MD files must start with YAML frontmatter (---)',\n      'PARSE_ERROR'\n    );\n  }\n\n  const frontmatterYaml = match[1]!;\n  const body = match[2] ?? '';\n  let frontmatter: unknown;\n  try {\n    frontmatter = parseYaml(frontmatterYaml);\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown parse error';\n    throw new AgentError(`Failed to parse YAML frontmatter: ${message}`, 'PARSE_ERROR', error);\n  }\n\n  if (!frontmatter || typeof frontmatter !== 'object') {\n    throw new AgentError('Invalid frontmatter: expected an object', 'PARSE_ERROR');\n  }\n\n  return { frontmatter: frontmatter as Record<string, unknown>, body };\n}\n\n/**\n * Load an agent definition from a Markdown template file.\n *\n * Extracts metadata from YAML frontmatter (name, description, tools).\n * The full MD content is the agent's identity - processed at compile time.\n */\nexport function loadAgentFromMdFile(filePath: string): AgentDefinition {\n  if (!existsSync(filePath)) {\n    throw new AgentError(`Agent file not found: ${filePath}`, 'NOT_FOUND');\n  }\n\n  let content: string;\n  try {\n    content = readFileSync(filePath, 'utf-8');\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown read error';\n    throw new AgentError(`Failed to read agent file ${filePath}: ${message}`, 'READ_ERROR', error);\n  }\n\n  const { frontmatter } = extractFrontmatter(content);\n\n  // Extract role from frontmatter 'name' field or filename\n  const role = (frontmatter.name as string) || getRoleFromFilename(filePath);\n  if (!role) {\n    throw new AgentError(\n      `Agent MD file must have a 'name' field in frontmatter or a valid filename: ${filePath}`,\n      'VALIDATION_ERROR'\n    );\n  }\n\n  // Extract description\n  const description = (frontmatter.description as string) || '';\n\n  // Extract tools\n  const tools: string[] | undefined = typeof frontmatter.tools === 'string'\n    ? frontmatter.tools.split(',').map((t: string) => t.trim()).filter(Boolean)\n    : undefined;\n\n  const definition: AgentDefinition = {\n    role,\n    type: 'ic-engineer', // Default, actual identity is in the MD content\n    display_name: role.split('-').map(w => w.charAt(0).toUpperCase() + w.slice(1)).join(' '),\n    description,\n  };\n\n  if (tools) {\n    definition.tools = tools;\n  }\n\n  return definition;\n}\n\n// --- Deprecated YAML support (backward compatibility) ---\n\n/**\n * Parse YAML content into an agent definition\n * @deprecated Use Markdown agent files instead\n */\nexport function parseAgentYaml(content: string, filePath?: string): unknown {\n  try {\n    return parseYaml(content);\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown parse error';\n    throw new AgentError(\n      `Failed to parse agent YAML${filePath ? ` in ${filePath}` : ''}: ${message}`,\n      'PARSE_ERROR',\n      error\n    );\n  }\n}\n\n/**\n * Validate parsed YAML against agent schema\n * @deprecated Use Markdown agent files instead\n */\nexport function validateAgentDefinition(agent: unknown): AgentDefinition {\n  const ajv = new Ajv.default({ allErrors: true, strict: false });\n  const validate = ajv.compile<AgentDefinition>(agentSchema);\n  const valid = validate(agent);\n\n  if (!valid) {\n    const errors: ErrorObject[] = validate.errors ?? [];\n    const errorMessages = errors.map((err: ErrorObject) => {\n      const path = err.instancePath || 'root';\n      return `${path}: ${err.message ?? 'unknown error'}`;\n    });\n\n    throw new AgentError(\n      `Agent validation failed:\\n  - ${errorMessages.join('\\n  - ')}`,\n      'VALIDATION_ERROR',\n      errors\n    );\n  }\n\n  return agent as AgentDefinition;\n}\n\n/**\n * Load and validate an agent definition from a YAML file\n * @deprecated Use Markdown agent files instead\n */\nexport function loadAgentFromYamlFile(filePath: string): AgentDefinition {\n  if (!existsSync(filePath)) {\n    throw new AgentError(`Agent file not found: ${filePath}`, 'NOT_FOUND');\n  }\n\n  let content: string;\n  try {\n    content = readFileSync(filePath, 'utf-8');\n  } catch (error) {\n    const message = error instanceof Error ? error.message : 'Unknown read error';\n    throw new AgentError(`Failed to read agent file ${filePath}: ${message}`, 'READ_ERROR', error);\n  }\n\n  const parsed = parseAgentYaml(content, filePath);\n  return validateAgentDefinition(parsed);\n}\n\n// --- Unified loading (supports both MD and YAML) ---\n\n/**\n * Load an agent definition from a file (MD or YAML).\n * MD files are the primary format. YAML files are deprecated but supported.\n */\nexport function loadAgentFromFile(filePath: string): AgentDefinition {\n  const ext = extname(filePath).toLowerCase();\n\n  if (ext === '.md') {\n    return loadAgentFromMdFile(filePath);\n  }\n\n  if (ext === '.yaml' || ext === '.yml') {\n    console.warn(\n      `Warning: YAML agent definitions are deprecated and will be removed in a future version.\\n` +\n      `  Please migrate ${basename(filePath)} to Markdown format.`\n    );\n    return loadAgentFromYamlFile(filePath);\n  }\n\n  throw new AgentError(\n    `Unsupported agent file format: ${ext}. Use .md (recommended) or .yaml/.yml (deprecated)`,\n    'PARSE_ERROR'\n  );\n}\n\n/**\n * List all agent files in a directory (MD and YAML).\n * Excludes files/directories starting with underscore (e.g., _templates/).\n */\nfunction listAgentFiles(dir: string): string[] {\n  if (!existsSync(dir)) {\n    return [];\n  }\n\n  return readdirSync(dir)\n    .filter((file) => {\n      // Skip underscore-prefixed files/dirs (templates, etc.)\n      if (file.startsWith('_')) return false;\n      const ext = extname(file).toLowerCase();\n      return ext === '.md' || ext === '.yaml' || ext === '.yml';\n    })\n    .map((file) => join(dir, file));\n}\n\n/**\n * Load all agents from a directory\n */\nexport function loadAgentsFromDirectory(\n  dir: string,\n  source: AgentSource\n): Map<string, AgentMetadata> {\n  const agents = new Map<string, AgentMetadata>();\n  const files = listAgentFiles(dir);\n\n  for (const filePath of files) {\n    try {\n      const definition = loadAgentFromFile(filePath);\n      agents.set(definition.role, {\n        definition,\n        source,\n        filePath,\n      });\n    } catch (error) {\n      // Log warning but continue loading other agents\n      const fileName = basename(filePath);\n      console.warn(`Warning: Failed to load agent from ${fileName}: ${(error as Error).message}`);\n    }\n  }\n\n  return agents;\n}\n\n/**\n * Get the agent role name from a filename\n */\nexport function getRoleFromFilename(filePath: string): string {\n  const fileName = basename(filePath);\n  const ext = extname(fileName);\n  return fileName.slice(0, -ext.length);\n}\n","/**\n * Variable Resolution System\n *\n * Resolves variable placeholders in agent definitions.\n * Supports: ${config.*}, ${agent.*}, ${remote.*}\n */\n\nimport type { CoreAIConfig } from '../config/types.js';\nimport type { AgentDefinition } from './types.js';\n\n/**\n * Context for variable resolution\n */\nexport interface ResolutionContext {\n  config?: CoreAIConfig;\n  agent?: AgentDefinition;\n}\n\n/**\n * Options for variable resolution\n */\nexport interface ResolutionOptions {\n  /**\n   * If true, throw an error for unresolved variables.\n   * If false, leave unresolved variables as-is.\n   * Default: false\n   */\n  strict?: boolean;\n}\n\n/**\n * Error thrown when variable resolution fails\n */\nexport class ResolutionError extends Error {\n  constructor(\n    message: string,\n    public readonly variable: string,\n    public readonly path?: string\n  ) {\n    super(message);\n    this.name = 'ResolutionError';\n  }\n}\n\n/**\n * Pattern to match variable placeholders: ${namespace.path.to.value}\n */\nconst VARIABLE_PATTERN = /\\$\\{([a-z_][a-z0-9_]*(?:\\.[a-z_][a-z0-9_]*)*)\\}/gi;\n\n/**\n * Get a nested value from an object using dot notation\n */\nfunction getNestedValue(obj: unknown, path: string): unknown {\n  const parts = path.split('.');\n  let current: unknown = obj;\n\n  for (const part of parts) {\n    if (current === null || current === undefined) {\n      return undefined;\n    }\n    if (typeof current !== 'object') {\n      return undefined;\n    }\n    current = (current as Record<string, unknown>)[part];\n  }\n\n  return current;\n}\n\n/**\n * Resolve a single variable reference\n */\nfunction resolveVariable(\n  variable: string,\n  context: ResolutionContext,\n  options: ResolutionOptions\n): string | undefined {\n  const parts = variable.split('.');\n  const namespace = parts[0];\n  const path = parts.slice(1).join('.');\n\n  let value: unknown;\n\n  switch (namespace) {\n    case 'config':\n      if (!context.config) {\n        if (options.strict) {\n          throw new ResolutionError(\n            `Cannot resolve \\${${variable}}: no config context provided`,\n            variable\n          );\n        }\n        return undefined;\n      }\n      value = getNestedValue(context.config, path);\n      break;\n\n    case 'agent':\n      if (!context.agent) {\n        if (options.strict) {\n          throw new ResolutionError(\n            `Cannot resolve \\${${variable}}: no agent context provided`,\n            variable\n          );\n        }\n        return undefined;\n      }\n      value = getNestedValue(context.agent, path);\n      break;\n\n    case 'remote':\n      // Remote is a shortcut for integration URLs\n      value = resolveRemoteVariable(path, context, options);\n      break;\n\n    default:\n      if (options.strict) {\n        throw new ResolutionError(`Unknown variable namespace: ${namespace}`, variable);\n      }\n      return undefined;\n  }\n\n  if (value === undefined) {\n    if (options.strict) {\n      throw new ResolutionError(`Cannot resolve \\${${variable}}: path not found`, variable, path);\n    }\n    return undefined;\n  }\n\n  // Convert value to string representation\n  if (typeof value === 'string') {\n    return value;\n  }\n  if (typeof value === 'number' || typeof value === 'boolean') {\n    return String(value);\n  }\n  // For objects/arrays, return JSON representation\n  return JSON.stringify(value);\n}\n\n/**\n * Resolve remote.* variables (shortcuts to integration URLs)\n */\nfunction resolveRemoteVariable(\n  path: string,\n  context: ResolutionContext,\n  options: ResolutionOptions\n): string | undefined {\n  if (!context.config?.integrations) {\n    if (options.strict) {\n      throw new ResolutionError(\n        `Cannot resolve \\${remote.${path}}: no integrations configured`,\n        `remote.${path}`\n      );\n    }\n    return undefined;\n  }\n\n  const integrations = context.config.integrations;\n\n  // Map remote shortcuts to integration paths\n  switch (path) {\n    case 'documentation':\n      return (\n        integrations.documentation?.config?.base_url ??\n        integrations.documentation?.config?.base_path\n      );\n\n    case 'issues':\n      return integrations.issue_tracker?.config?.base_url;\n\n    case 'git':\n      return integrations.git?.config?.repo;\n\n    case 'state':\n      return integrations.state?.config?.base_path ?? integrations.state?.config?.bucket;\n\n    default:\n      // Try to resolve as nested path under integrations\n      return getNestedValue(integrations, path) as string | undefined;\n  }\n}\n\n/**\n * Resolve all variables in a string\n */\nexport function resolveString(\n  input: string,\n  context: ResolutionContext,\n  options: ResolutionOptions = {}\n): string {\n  return input.replace(VARIABLE_PATTERN, (match, variable: string) => {\n    const resolved = resolveVariable(variable, context, options);\n    return resolved !== undefined ? resolved : match;\n  });\n}\n\n/**\n * Check if a string contains variable placeholders\n */\nexport function hasVariables(input: string): boolean {\n  // Create new regex to avoid state issues with global flag\n  const pattern = /\\$\\{([a-z_][a-z0-9_]*(?:\\.[a-z_][a-z0-9_]*)*)\\}/i;\n  return pattern.test(input);\n}\n\n/**\n * Extract all variable references from a string\n */\nexport function extractVariables(input: string): string[] {\n  const matches = input.matchAll(VARIABLE_PATTERN);\n  return Array.from(matches, (m) => m[1]).filter((v): v is string => v !== undefined);\n}\n\n/**\n * Recursively resolve all variables in an object\n */\nexport function resolveObject<T>(\n  obj: T,\n  context: ResolutionContext,\n  options: ResolutionOptions = {}\n): T {\n  if (obj === null || obj === undefined) {\n    return obj;\n  }\n\n  if (typeof obj === 'string') {\n    return resolveString(obj, context, options) as T;\n  }\n\n  if (Array.isArray(obj)) {\n    return obj.map((item) => resolveObject(item, context, options)) as T;\n  }\n\n  if (typeof obj === 'object') {\n    const result: Record<string, unknown> = {};\n    for (const [key, value] of Object.entries(obj)) {\n      result[key] = resolveObject(value, context, options);\n    }\n    return result as T;\n  }\n\n  return obj;\n}\n\n/**\n * Resolve all variables in an agent definition\n */\nexport function resolveAgentDefinition(\n  agent: AgentDefinition,\n  config?: CoreAIConfig,\n  options: ResolutionOptions = {}\n): AgentDefinition {\n  const context: ResolutionContext = {\n    agent,\n  };\n  if (config) {\n    context.config = config;\n  }\n\n  return resolveObject(agent, context, options);\n}\n","/**\n * Agent Compiler\n *\n * Processes agent Markdown templates with variable substitution and include directives.\n * For deprecated YAML agents, falls back to structural transformation.\n */\n\nimport { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';\nimport { join, dirname, extname, isAbsolute } from 'path';\nimport { parse as parseYaml, stringify as stringifyYaml } from 'yaml';\nimport type { CoreAIConfig } from '../config/types.js';\nimport type { AgentDefinition, AgentMetadata, AgentSource } from './types.js';\nimport { DEFAULT_AGENT_TOOLS } from './types.js';\nimport { loadAgentsFromDirectory } from './loader.js';\nimport { resolveString, resolveAgentDefinition, type ResolutionContext } from './resolver.js';\n\n/**\n * Options for compiling agents\n */\nexport interface CompileOptions {\n  outputDir?: string;\n  coreAgentsDir?: string;\n  customAgentsDir?: string;\n  projectRoot?: string;\n  filter?: (agent: AgentDefinition) => boolean;\n  mcpServers?: string[];\n}\n\n/**\n * Result of compiling agents\n */\nexport interface CompileResult {\n  compiled: {\n    role: string;\n    source: AgentSource;\n    outputPath: string;\n  }[];\n  errors: {\n    role: string;\n    source: AgentSource;\n    error: string;\n  }[];\n}\n\n/**\n * Build the tools string for agent frontmatter\n */\nexport function buildAgentTools(agent: AgentDefinition, mcpServers?: string[]): string {\n  const tools: string[] = agent.tools\n    ? [...agent.tools]\n    : [...DEFAULT_AGENT_TOOLS];\n\n  if (mcpServers && mcpServers.length > 0) {\n    for (const server of mcpServers) {\n      const mcpTool = `mcp__${server}`;\n      if (!tools.includes(mcpTool)) {\n        tools.push(mcpTool);\n      }\n    }\n  }\n\n  return tools.join(', ');\n}\n\n/**\n * Process include directives in a template.\n *\n * Replaces `<!-- include: path -->` with the contents of the referenced file.\n * Paths are resolved relative to the template's directory.\n * Supports recursive includes up to a configurable depth limit.\n */\nexport function processIncludes(\n  template: string,\n  templateDir: string,\n  depth: number = 0,\n  maxDepth: number = 3\n): string {\n  if (depth > maxDepth) {\n    throw new Error(`Include depth exceeded maximum of ${maxDepth}`);\n  }\n\n  const includePattern = /<!--\\s*include:\\s*(\\S+)\\s*-->/g;\n\n  return template.replace(includePattern, (_match, includePath: string) => {\n    const resolvedPath = isAbsolute(includePath)\n      ? includePath\n      : join(templateDir, includePath);\n\n    if (!existsSync(resolvedPath)) {\n      throw new Error(`Include file not found: ${includePath} (resolved to ${resolvedPath})`);\n    }\n\n    const includedContent = readFileSync(resolvedPath, 'utf-8');\n    return processIncludes(includedContent, dirname(resolvedPath), depth + 1, maxDepth);\n  });\n}\n\n/**\n * Process a Markdown agent template: expand includes, resolve variables, and update frontmatter tools.\n *\n * This is the primary compilation path for .md agent files.\n * Pipeline: read → expand includes → extract custom frontmatter → resolve variables → inject tools → rebuild.\n */\nexport function processAgentTemplate(\n  templatePath: string,\n  agent: AgentDefinition,\n  config?: CoreAIConfig,\n  mcpServers?: string[]\n): string {\n  const template = readFileSync(templatePath, 'utf-8');\n\n  // Step 1: Expand include directives before variable resolution\n  const templateDir = dirname(templatePath);\n  const expandedTemplate = processIncludes(template, templateDir);\n\n  // Step 2: Parse frontmatter early to extract custom agent fields (e.g. tech_artifacts)\n  const earlyMatch = expandedTemplate.match(/^---\\n([\\s\\S]*?)\\n---\\n?([\\s\\S]*)$/);\n  if (!earlyMatch) {\n    throw new Error(`Invalid markdown format in ${templatePath}: no frontmatter found`);\n  }\n\n  const earlyFrontmatter = parseYaml(earlyMatch[1]!) as Record<string, unknown>;\n  const reservedKeys = new Set(['name', 'description', 'tools']);\n  const extendedAgent: Record<string, unknown> = { ...agent };\n  for (const [key, value] of Object.entries(earlyFrontmatter)) {\n    if (!reservedKeys.has(key) && !(key in extendedAgent)) {\n      extendedAgent[key] = value;\n    }\n  }\n\n  // Step 3: Build resolution context with extended agent\n  const context: ResolutionContext = { agent: extendedAgent as unknown as AgentDefinition };\n  if (config) {\n    context.config = config;\n  }\n\n  // Step 4: Resolve variables in the expanded template\n  const resolved = resolveString(expandedTemplate, context);\n\n  // Step 5: Parse frontmatter from resolved template to update tools\n  const frontmatterMatch = resolved.match(/^---\\n([\\s\\S]*?)\\n---\\n?([\\s\\S]*)$/);\n  if (!frontmatterMatch) {\n    throw new Error(`Invalid markdown format after resolution in ${templatePath}`);\n  }\n\n  const frontmatterYaml = frontmatterMatch[1]!;\n  const body = frontmatterMatch[2] ?? '';\n  const frontmatter = parseYaml(frontmatterYaml) as Record<string, unknown>;\n\n  // Update tools line with MCP servers\n  const tools = buildAgentTools(agent, mcpServers);\n  frontmatter.tools = tools;\n\n  // Flatten description for frontmatter (single line)\n  if (typeof frontmatter.description === 'string') {\n    frontmatter.description = frontmatter.description.replace(/\\n/g, ' ').trim();\n  }\n\n  // Rebuild with updated frontmatter\n  const updatedFrontmatter = stringifyYaml(frontmatter, { lineWidth: 0 }).trim();\n  return `---\\n${updatedFrontmatter}\\n---\\n${body}`;\n}\n\n// --- Deprecated YAML compilation (backward compatibility) ---\n\n/**\n * Generate markdown content from a resolved YAML agent definition.\n * @deprecated Use MD templates instead. This exists for backward compatibility with YAML agents.\n */\nexport function generateAgentMarkdown(agent: AgentDefinition, mcpServers?: string[]): string {\n  const lines: string[] = [];\n  const tools = buildAgentTools(agent, mcpServers);\n\n  // YAML frontmatter\n  lines.push('---');\n  lines.push(`name: ${agent.role}`);\n  lines.push(`description: ${agent.description.replace(/\\n/g, ' ').trim()}`);\n  lines.push(`tools: ${tools}`);\n  lines.push('---');\n  lines.push('');\n\n  // Header\n  lines.push(`# ${agent.display_name}`);\n  lines.push('');\n  lines.push(`**Role:** ${agent.role}`);\n  lines.push(`**Type:** ${agent.type}`);\n  lines.push('');\n\n  // Description\n  lines.push('## Description');\n  lines.push('');\n  lines.push(agent.description.trim());\n  lines.push('');\n\n  // Responsibilities\n  if (agent.responsibilities && agent.responsibilities.length > 0) {\n    lines.push('## Responsibilities');\n    lines.push('');\n    for (const r of agent.responsibilities) {\n      lines.push(`- ${r}`);\n    }\n    lines.push('');\n  }\n\n  // Expertise\n  if (agent.expertise) {\n    lines.push('## Expertise');\n    lines.push('');\n    if (agent.expertise.primary && agent.expertise.primary.length > 0) {\n      lines.push('### Primary Areas');\n      lines.push('');\n      for (const area of agent.expertise.primary) {\n        lines.push(`- ${area}`);\n      }\n      lines.push('');\n    }\n    if (agent.expertise.tech_stack) {\n      lines.push('### Tech Stack');\n      lines.push('');\n      const ts = agent.expertise.tech_stack;\n      if (typeof ts === 'string') {\n        lines.push(ts);\n      } else if (typeof ts === 'object') {\n        lines.push('```json');\n        lines.push(JSON.stringify(ts, null, 2));\n        lines.push('```');\n      }\n      lines.push('');\n    }\n  }\n\n  // Skills\n  if (agent.skills && agent.skills.length > 0) {\n    lines.push('## Skills');\n    lines.push('');\n    for (const skill of agent.skills) {\n      lines.push(`- ${skill}`);\n    }\n    lines.push('');\n  }\n\n  // Principles\n  if (agent.principles) {\n    lines.push('## Principles');\n    lines.push('');\n    for (const [category, items] of Object.entries(agent.principles)) {\n      if (items && Array.isArray(items) && items.length > 0) {\n        const title = category.replace(/[_-]/g, ' ').replace(/\\b\\w/g, (c) => c.toUpperCase());\n        lines.push(`### ${title}`);\n        lines.push('');\n        for (const item of items) {\n          lines.push(`- ${item}`);\n        }\n        lines.push('');\n      }\n    }\n  }\n\n  // Behaviors\n  if (agent.behaviors) {\n    lines.push('## Behaviors');\n    lines.push('');\n    if (agent.behaviors.workflow) {\n      lines.push(`**Workflow:** ${agent.behaviors.workflow}`);\n      lines.push('');\n    }\n    if (agent.behaviors.quality_gates) {\n      lines.push('### Quality Gates');\n      lines.push('');\n      const gates = agent.behaviors.quality_gates;\n      if (typeof gates === 'string') {\n        lines.push(gates);\n      } else if (typeof gates === 'object') {\n        lines.push('```json');\n        lines.push(JSON.stringify(gates, null, 2));\n        lines.push('```');\n      }\n      lines.push('');\n    }\n  }\n\n  // Knowledge Library\n  if (agent.knowledge_library) {\n    generateKnowledgeLibrarySection(agent, lines);\n  }\n\n  // Communication\n  if (agent.communication) {\n    generateCommunicationSection(agent, lines);\n  }\n\n  // Protocols\n  if (agent.protocols?.startup) {\n    generateStartupProtocolSection(agent, lines);\n  }\n  if (agent.protocols?.completion) {\n    generateCompletionProtocolSection(agent, lines);\n  }\n\n  // Legacy context sources\n  if (agent.context_sources && !agent.knowledge_library) {\n    lines.push('## Context Sources');\n    lines.push('');\n    if (agent.context_sources.shared?.length) {\n      lines.push('### Shared');\n      lines.push('');\n      for (const s of agent.context_sources.shared) lines.push(`- ${s}`);\n      lines.push('');\n    }\n    if (agent.context_sources.personal?.length) {\n      lines.push('### Personal');\n      lines.push('');\n      for (const p of agent.context_sources.personal) lines.push(`- ${p}`);\n      lines.push('');\n    }\n  }\n\n  lines.push('---');\n  lines.push('');\n  lines.push('*Generated by CoreAI*');\n  lines.push('');\n\n  return lines.join('\\n');\n}\n\nfunction generateKnowledgeLibrarySection(agent: AgentDefinition, lines: string[]): void {\n  const kl = agent.knowledge_library;\n  if (!kl) return;\n  lines.push('## Knowledge Library Structure');\n  lines.push('');\n  if (kl.shared) {\n    lines.push('### Shared Context (Root - All Agents)');\n    lines.push('```');\n    lines.push('/KnowledgeLibrary/');\n    if (kl.shared.context) lines.push(`├── ${kl.shared.context.split('/').pop()}`);\n    if (kl.shared.architecture) lines.push(`├── ${kl.shared.architecture.split('/').pop()}`);\n    if (kl.shared.prd) lines.push(`└── ${kl.shared.prd.split('/').pop()}`);\n    lines.push('```');\n    if (kl.shared.remote?.length) {\n      lines.push('');\n      lines.push('**Remote Documentation:**');\n      for (const r of kl.shared.remote) lines.push(`- ${r}`);\n    }\n    lines.push('');\n  }\n  if (kl.personal) {\n    lines.push(`### Personal Context (${agent.role})`);\n    lines.push('```');\n    lines.push(`/KnowledgeLibrary/${agent.role}/`);\n    if (kl.personal.context) { lines.push('├── context/'); lines.push('│   └── current.txt'); }\n    if (kl.personal.history) { lines.push('├── history/'); }\n    if (kl.personal.inbox) { lines.push('├── inbox/'); }\n    if (kl.personal.outbox) { lines.push('├── outbox/'); }\n    if (kl.personal.tech) { lines.push('├── tech/'); }\n    if (kl.personal.control) {\n      lines.push('└── control/');\n      if (kl.personal.control.objectives) lines.push('    ├── objectives.txt');\n      if (kl.personal.control.decisions) lines.push('    ├── decisions.txt');\n      if (kl.personal.control.dependencies) lines.push('    ├── dependencies.txt');\n      if (kl.personal.control.index) lines.push('    └── index.txt');\n    }\n    lines.push('```');\n    lines.push('');\n  }\n  lines.push('---');\n  lines.push('');\n}\n\nfunction generateCommunicationSection(agent: AgentDefinition, lines: string[]): void {\n  const comm = agent.communication;\n  if (!comm) return;\n  lines.push('## Communication');\n  lines.push('');\n  if (comm.inbox) lines.push(`**Inbox:** \\`${comm.inbox}\\``);\n  if (comm.outbox) lines.push(`**Outbox:** \\`${comm.outbox}\\``);\n  lines.push('');\n  if (comm.message_format || comm.outbox_format || comm.processed_dir) {\n    lines.push('### Message Conventions');\n    lines.push('');\n    if (comm.message_format) lines.push(`- **Inbox message naming:** \\`${comm.message_format}\\``);\n    if (comm.outbox_format) lines.push(`- **Outbox message naming:** \\`${comm.outbox_format}\\``);\n    if (comm.processed_dir) lines.push(`- **Processed messages:** Move handled inbox messages to \\`${comm.processed_dir}\\``);\n    lines.push('');\n  }\n}\n\nfunction generateStartupProtocolSection(agent: AgentDefinition, lines: string[]): void {\n  const p = agent.protocols;\n  if (!p?.startup) return;\n  lines.push('## When Invoked');\n  lines.push('');\n  lines.push('> **MANDATORY STARTUP PROTOCOL** - Execute before proceeding with any task.');\n  lines.push('');\n  lines.push('### Session Context Check');\n  lines.push('');\n  if (p.startup.first_session?.length) {\n    lines.push('**If this is your FIRST invocation in this session:**');\n    lines.push('');\n    for (const s of p.startup.first_session) lines.push(`- [ ] ${s}`);\n    lines.push('');\n    lines.push('Acknowledge: \"Startup protocol complete. Full context loaded.\"');\n    lines.push('');\n  }\n  if (p.startup.subsequent?.length) {\n    lines.push('**If you have ALREADY loaded context in this session:**');\n    lines.push('');\n    for (const s of p.startup.subsequent) lines.push(`- [ ] ${s}`);\n    lines.push('');\n    lines.push('Acknowledge: \"Context already loaded. Checked inbox for new messages.\"');\n    lines.push('');\n  }\n  lines.push('Then proceed with the task.');\n  lines.push('');\n  lines.push('---');\n  lines.push('');\n}\n\nfunction generateCompletionProtocolSection(agent: AgentDefinition, lines: string[]): void {\n  const p = agent.protocols;\n  if (!p?.completion?.length) return;\n  lines.push('## Before Finishing');\n  lines.push('');\n  lines.push('> **MANDATORY COMPLETION PROTOCOL** - Execute ALL steps before ending any task.');\n  lines.push('');\n  for (let i = 0; i < p.completion.length; i++) {\n    lines.push(`### ${i + 1}. ${p.completion[i]}`);\n    lines.push('');\n  }\n  lines.push('Acknowledge: \"Completion protocol finished. Context updated.\"');\n  lines.push('');\n  lines.push('---');\n  lines.push('');\n}\n\n// --- Unified compilation ---\n\n/**\n * Compile a single agent.\n * MD templates use simple variable substitution.\n * YAML files use the deprecated structural transformation.\n */\nexport function compileAgent(\n  agent: AgentDefinition,\n  filePath: string,\n  config?: CoreAIConfig,\n  mcpServers?: string[]\n): string {\n  const ext = extname(filePath).toLowerCase();\n\n  if (ext === '.md') {\n    return processAgentTemplate(filePath, agent, config, mcpServers);\n  }\n\n  // Deprecated YAML path\n  const resolved = resolveAgentDefinition(agent, config);\n  return generateAgentMarkdown(resolved, mcpServers);\n}\n\n/**\n * Load all agents from core and custom directories\n */\nexport function loadAllAgents(options: CompileOptions = {}): Map<string, AgentMetadata> {\n  const agents = new Map<string, AgentMetadata>();\n\n  if (options.coreAgentsDir && existsSync(options.coreAgentsDir)) {\n    const coreAgents = loadAgentsFromDirectory(options.coreAgentsDir, 'core');\n    for (const [role, metadata] of coreAgents) {\n      agents.set(role, metadata);\n    }\n  }\n\n  if (options.customAgentsDir && existsSync(options.customAgentsDir)) {\n    const customAgents = loadAgentsFromDirectory(options.customAgentsDir, 'custom');\n    for (const [role, metadata] of customAgents) {\n      if (agents.has(role)) {\n        metadata.source = 'override';\n      }\n      agents.set(role, metadata);\n    }\n  }\n\n  return agents;\n}\n\n/**\n * Filter agents based on team configuration\n */\nexport function filterAgentsByTeam(\n  agents: Map<string, AgentMetadata>,\n  config?: CoreAIConfig\n): Map<string, AgentMetadata> {\n  if (!config?.team?.agents || config.team.agents.length === 0) {\n    return agents;\n  }\n\n  const filtered = new Map<string, AgentMetadata>();\n  for (const [role, metadata] of agents) {\n    if (metadata.source === 'custom' || metadata.source === 'override') {\n      filtered.set(role, metadata);\n    } else if (config.team.agents.includes(role)) {\n      filtered.set(role, metadata);\n    }\n  }\n\n  return filtered;\n}\n\n/**\n * Compile all agents and write to output directory\n */\nexport function compileAgents(config?: CoreAIConfig, options: CompileOptions = {}): CompileResult {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const outputDir = options.outputDir ?? join(projectRoot, '.claude', 'agents');\n  const coreAgentsDir = options.coreAgentsDir ?? getCoreAgentsDir();\n  const customAgentsDir = options.customAgentsDir ?? join(projectRoot, 'coreai', 'agents');\n\n  const result: CompileResult = {\n    compiled: [],\n    errors: [],\n  };\n\n  const allAgents = loadAllAgents({\n    ...options,\n    coreAgentsDir,\n    customAgentsDir,\n  });\n\n  const agents = filterAgentsByTeam(allAgents, config);\n\n  if (!existsSync(outputDir)) {\n    mkdirSync(outputDir, { recursive: true });\n  }\n\n  for (const [role, metadata] of agents) {\n    if (options.filter && !options.filter(metadata.definition)) {\n      continue;\n    }\n\n    try {\n      const markdown = compileAgent(\n        metadata.definition,\n        metadata.filePath,\n        config,\n        options.mcpServers\n      );\n      const outputPath = join(outputDir, `${role}.md`);\n      writeFileSync(outputPath, markdown, 'utf-8');\n\n      result.compiled.push({\n        role,\n        source: metadata.source,\n        outputPath,\n      });\n    } catch (error) {\n      result.errors.push({\n        role,\n        source: metadata.source,\n        error: error instanceof Error ? error.message : String(error),\n      });\n    }\n  }\n\n  return result;\n}\n\n/**\n * Get the default core agents directory\n */\nexport function getCoreAgentsDir(): string {\n  let currentDir = dirname(import.meta.url.replace('file://', ''));\n  for (let i = 0; i < 5; i++) {\n    if (existsSync(join(currentDir, 'package.json'))) {\n      return join(currentDir, 'agents');\n    }\n    currentDir = dirname(currentDir);\n  }\n  return join(dirname(dirname(dirname(import.meta.url.replace('file://', '')))), 'agents');\n}\n","/**\n * Adapter Types\n *\n * Common types used across all adapters.\n */\n\n/**\n * The type of adapter\n */\nexport type AdapterType = 'issue_tracker' | 'git' | 'documentation' | 'state';\n\n/**\n * How the adapter connects to the service\n */\nexport type AdapterImplementation = 'mcp' | 'native' | 'mock';\n\n/**\n * Base metadata for all adapters\n */\nexport interface AdapterInfo {\n  /**\n   * Type of adapter\n   */\n  type: AdapterType;\n\n  /**\n   * Provider name (e.g., 'github', 'jira', 'confluence')\n   */\n  provider: string;\n\n  /**\n   * How this adapter is implemented\n   */\n  implementation: AdapterImplementation;\n\n  /**\n   * Whether the adapter is currently connected/available\n   */\n  connected: boolean;\n}\n\n/**\n * Common issue status values\n */\nexport type IssueStatus =\n  | 'backlog'\n  | 'todo'\n  | 'in_progress'\n  | 'in_review'\n  | 'done'\n  | 'closed'\n  | string;\n\n/**\n * Common pull request status values\n */\nexport type PullRequestStatus = 'open' | 'merged' | 'closed' | 'draft';\n\n/**\n * Common review decision values\n */\nexport type ReviewDecision = 'approve' | 'request_changes' | 'comment';\n\n/**\n * Issue data structure\n */\nexport interface Issue {\n  id: string;\n  key: string;\n  title: string;\n  description?: string;\n  status: IssueStatus;\n  assignee?: string;\n  reporter?: string;\n  labels?: string[];\n  priority?: string;\n  created_at?: string;\n  updated_at?: string;\n  url?: string;\n}\n\n/**\n * Data for creating an issue\n */\nexport interface CreateIssueData {\n  title: string;\n  description?: string;\n  assignee?: string;\n  labels?: string[];\n  priority?: string;\n  type?: string;\n}\n\n/**\n * Data for updating an issue\n */\nexport interface UpdateIssueData {\n  title?: string;\n  description?: string;\n  assignee?: string;\n  labels?: string[];\n  priority?: string;\n  status?: IssueStatus;\n}\n\n/**\n * Query parameters for listing issues\n */\nexport interface IssueQuery {\n  assignee?: string;\n  status?: IssueStatus | IssueStatus[];\n  labels?: string[];\n  limit?: number;\n  offset?: number;\n}\n\n/**\n * Pull request data structure\n */\nexport interface PullRequest {\n  id: string;\n  number: number;\n  title: string;\n  description?: string;\n  status: PullRequestStatus;\n  author?: string;\n  source_branch: string;\n  target_branch: string;\n  created_at?: string;\n  updated_at?: string;\n  merged_at?: string;\n  url?: string;\n  reviewers?: string[];\n}\n\n/**\n * Data for creating a pull request\n */\nexport interface CreatePullRequestData {\n  title: string;\n  description?: string;\n  source_branch: string;\n  target_branch: string;\n  draft?: boolean;\n  reviewers?: string[];\n}\n\n/**\n * Query parameters for listing pull requests\n */\nexport interface PullRequestQuery {\n  status?: PullRequestStatus | PullRequestStatus[];\n  author?: string;\n  limit?: number;\n  offset?: number;\n}\n\n/**\n * Review data for a pull request\n */\nexport interface Review {\n  id: string;\n  pull_request_id: string;\n  author: string;\n  decision: ReviewDecision;\n  body?: string;\n  created_at?: string;\n}\n\n/**\n * Data for creating a review\n */\nexport interface CreateReviewData {\n  decision: ReviewDecision;\n  body?: string;\n  comments?: ReviewComment[];\n}\n\n/**\n * Comment on a specific line in a review\n */\nexport interface ReviewComment {\n  path: string;\n  line: number;\n  body: string;\n}\n\n/**\n * Documentation page data structure\n */\nexport interface DocumentationPage {\n  id: string;\n  title: string;\n  content?: string;\n  path?: string;\n  url?: string;\n  parent_id?: string;\n  created_at?: string;\n  updated_at?: string;\n}\n\n/**\n * Query parameters for searching documentation\n */\nexport interface DocumentationQuery {\n  query: string;\n  space?: string;\n  limit?: number;\n}\n\n/**\n * File/directory entry for state provider\n */\nexport interface StateEntry {\n  path: string;\n  name: string;\n  type: 'file' | 'directory';\n  size?: number;\n  modified_at?: string;\n}\n\n/**\n * Options for state operations\n */\nexport interface StateOptions {\n  /**\n   * Create parent directories if they don't exist\n   */\n  recursive?: boolean;\n\n  /**\n   * Encoding for text content\n   */\n  encoding?: BufferEncoding;\n}\n\n/**\n * Adapter error with context\n */\nexport class AdapterError extends Error {\n  public readonly code: AdapterErrorCode;\n  public readonly adapter?: AdapterInfo;\n\n  constructor(message: string, code: AdapterErrorCode, adapter?: AdapterInfo, cause?: Error) {\n    super(message, { cause });\n    this.name = 'AdapterError';\n    this.code = code;\n    if (adapter) {\n      this.adapter = adapter;\n    }\n  }\n}\n\n/**\n * Error codes for adapter operations\n */\nexport type AdapterErrorCode =\n  | 'not_found'\n  | 'unauthorized'\n  | 'forbidden'\n  | 'rate_limited'\n  | 'network_error'\n  | 'invalid_request'\n  | 'not_implemented'\n  | 'connection_failed'\n  | 'provider_error'\n  | 'operation_failed'\n  | 'invalid_operation'\n  | 'not_connected'\n  | 'invalid_config';\n","/**\n * Adapter Factory\n *\n * Creates and manages adapter instances based on configuration.\n */\n\nimport type { CoreAIConfig, AdapterStrategy } from '../config/types.js';\nimport type { AdapterType, AdapterInfo, AdapterImplementation } from './types.js';\nimport { AdapterError } from './types.js';\nimport type {\n  IssueTrackerAdapter,\n  GitProviderAdapter,\n  DocumentationProviderAdapter,\n  StateProviderAdapter,\n  Adapter,\n} from './interfaces.js';\n\n/**\n * Options for creating an adapter\n */\nexport interface AdapterFactoryOptions {\n  /**\n   * Override the strategy from config\n   */\n  strategy?: AdapterStrategy;\n\n  /**\n   * Force a specific implementation\n   */\n  implementation?: AdapterImplementation;\n}\n\n/**\n * Registry of adapter creators\n */\ninterface AdapterCreator<T extends Adapter> {\n  mcp?: (config: CoreAIConfig) => Promise<T>;\n  native?: (config: CoreAIConfig) => Promise<T>;\n  mock?: (config: CoreAIConfig) => Promise<T>;\n}\n\n/**\n * Adapter Factory\n *\n * Creates adapter instances based on configuration and available implementations.\n */\nexport class AdapterFactory {\n  private config: CoreAIConfig;\n  private adapters = new Map<AdapterType, Adapter>();\n\n  /**\n   * Registry of adapter creators by type\n   */\n  private creators: {\n    issue_tracker: AdapterCreator<IssueTrackerAdapter>;\n    git: AdapterCreator<GitProviderAdapter>;\n    documentation: AdapterCreator<DocumentationProviderAdapter>;\n    state: AdapterCreator<StateProviderAdapter>;\n  } = {\n    issue_tracker: {},\n    git: {},\n    documentation: {},\n    state: {},\n  };\n\n  constructor(config: CoreAIConfig) {\n    this.config = config;\n  }\n\n  /**\n   * Register an adapter creator\n   */\n  registerCreator<T extends AdapterType>(\n    type: T,\n    implementation: AdapterImplementation,\n    creator: (config: CoreAIConfig) => Promise<Adapter>\n  ): void {\n    const typeCreators = this.creators[type] as AdapterCreator<Adapter>;\n    typeCreators[implementation] = creator;\n  }\n\n  /**\n   * Get an issue tracker adapter\n   */\n  async getIssueTracker(options?: AdapterFactoryOptions): Promise<IssueTrackerAdapter> {\n    return this.getAdapter('issue_tracker', options) as Promise<IssueTrackerAdapter>;\n  }\n\n  /**\n   * Get a git provider adapter\n   */\n  async getGitProvider(options?: AdapterFactoryOptions): Promise<GitProviderAdapter> {\n    return this.getAdapter('git', options) as Promise<GitProviderAdapter>;\n  }\n\n  /**\n   * Get a documentation provider adapter\n   */\n  async getDocumentationProvider(\n    options?: AdapterFactoryOptions\n  ): Promise<DocumentationProviderAdapter> {\n    return this.getAdapter('documentation', options) as Promise<DocumentationProviderAdapter>;\n  }\n\n  /**\n   * Get a state provider adapter\n   */\n  async getStateProvider(options?: AdapterFactoryOptions): Promise<StateProviderAdapter> {\n    return this.getAdapter('state', options) as Promise<StateProviderAdapter>;\n  }\n\n  /**\n   * Get an adapter by type\n   */\n  async getAdapter(type: AdapterType, options?: AdapterFactoryOptions): Promise<Adapter> {\n    // Check if we already have this adapter cached\n    const cached = this.adapters.get(type);\n    if (cached && cached.isConnected()) {\n      return cached;\n    }\n\n    // Determine the strategy\n    const strategy = this.getStrategy(type, options);\n\n    // Get the implementation to use\n    const implementation = options?.implementation ?? this.selectImplementation(type, strategy);\n\n    // Create the adapter\n    const adapter = await this.createAdapter(type, implementation);\n\n    // Cache it\n    this.adapters.set(type, adapter);\n\n    return adapter;\n  }\n\n  /**\n   * Check if an adapter type is configured\n   */\n  hasIntegration(type: AdapterType): boolean {\n    const integrations = this.config.integrations;\n    if (!integrations) return false;\n\n    switch (type) {\n      case 'issue_tracker':\n        return !!integrations.issue_tracker?.provider;\n      case 'git':\n        return !!integrations.git?.provider;\n      case 'documentation':\n        return !!integrations.documentation?.provider;\n      case 'state':\n        return !!integrations.state?.provider;\n      default:\n        return false;\n    }\n  }\n\n  /**\n   * Get information about a configured integration\n   */\n  getIntegrationInfo(type: AdapterType): { provider: string; strategy: AdapterStrategy } | null {\n    const integrations = this.config.integrations;\n    if (!integrations) return null;\n\n    let integration;\n    switch (type) {\n      case 'issue_tracker':\n        integration = integrations.issue_tracker;\n        break;\n      case 'git':\n        integration = integrations.git;\n        break;\n      case 'documentation':\n        integration = integrations.documentation;\n        break;\n      case 'state':\n        integration = integrations.state;\n        break;\n    }\n\n    if (!integration?.provider) return null;\n\n    return {\n      provider: integration.provider,\n      strategy: integration.strategy ?? 'auto',\n    };\n  }\n\n  /**\n   * Disconnect and clear all cached adapters\n   */\n  async disconnectAll(): Promise<void> {\n    const disconnects: Promise<void>[] = [];\n\n    for (const adapter of this.adapters.values()) {\n      if (adapter.isConnected()) {\n        disconnects.push(adapter.disconnect());\n      }\n    }\n\n    await Promise.all(disconnects);\n    this.adapters.clear();\n  }\n\n  /**\n   * Get the strategy for an adapter type\n   */\n  private getStrategy(type: AdapterType, options?: AdapterFactoryOptions): AdapterStrategy {\n    if (options?.strategy) {\n      return options.strategy;\n    }\n\n    const info = this.getIntegrationInfo(type);\n    return info?.strategy ?? 'auto';\n  }\n\n  /**\n   * Select the implementation based on strategy and availability\n   */\n  private selectImplementation(\n    type: AdapterType,\n    strategy: AdapterStrategy\n  ): AdapterImplementation {\n    const creators = this.creators[type];\n\n    switch (strategy) {\n      case 'mcp':\n        if (creators.mcp) return 'mcp';\n        throw new AdapterError(\n          `MCP adapter not available for ${type}`,\n          'not_implemented',\n          undefined\n        );\n\n      case 'native':\n        if (creators.native) return 'native';\n        throw new AdapterError(\n          `Native adapter not available for ${type}`,\n          'not_implemented',\n          undefined\n        );\n\n      case 'auto':\n      default:\n        // Prefer MCP, fall back to native\n        if (creators.mcp) return 'mcp';\n        if (creators.native) return 'native';\n        if (creators.mock) return 'mock';\n\n        throw new AdapterError(\n          `No adapter implementation available for ${type}`,\n          'not_implemented',\n          undefined\n        );\n    }\n  }\n\n  /**\n   * Create an adapter instance\n   */\n  private async createAdapter(\n    type: AdapterType,\n    implementation: AdapterImplementation\n  ): Promise<Adapter> {\n    const creators = this.creators[type];\n    const creator = creators[implementation];\n\n    if (!creator) {\n      throw new AdapterError(\n        `No ${implementation} adapter creator registered for ${type}`,\n        'not_implemented',\n        undefined\n      );\n    }\n\n    const adapter = await creator(this.config);\n    await adapter.connect();\n\n    return adapter;\n  }\n}\n\n/**\n * Create an adapter factory from configuration\n */\nexport function createAdapterFactory(config: CoreAIConfig): AdapterFactory {\n  return new AdapterFactory(config);\n}\n\n/**\n * Create adapter info helper\n */\nexport function createAdapterInfo(\n  type: AdapterType,\n  provider: string,\n  implementation: AdapterImplementation,\n  connected = false\n): AdapterInfo {\n  return {\n    type,\n    provider,\n    implementation,\n    connected,\n  };\n}\n","/**\n * MCP Client Wrapper\n *\n * Provides a simplified interface for connecting to and communicating with MCP servers.\n */\n\nimport { Client } from '@modelcontextprotocol/sdk/client/index.js';\nimport { StdioClientTransport } from '@modelcontextprotocol/sdk/client/stdio.js';\nimport type { Transport } from '@modelcontextprotocol/sdk/shared/transport.js';\nimport type {\n  McpServerConfig,\n  McpServerInfo,\n  McpTool,\n  McpResource,\n  McpToolResult,\n  McpCapabilities,\n  McpContent,\n  StdioServerConfig,\n} from './types.js';\nimport { McpError } from './types.js';\n\n/**\n * Options for creating an MCP client\n */\nexport interface McpClientOptions {\n  /**\n   * Client name to report to servers\n   */\n  clientName?: string;\n\n  /**\n   * Client version to report to servers\n   */\n  clientVersion?: string;\n\n  /**\n   * Timeout for operations in milliseconds\n   */\n  timeout?: number;\n}\n\nconst DEFAULT_OPTIONS: Required<McpClientOptions> = {\n  clientName: 'coreai',\n  clientVersion: '0.1.0',\n  timeout: 30000,\n};\n\n/**\n * MCP Client Wrapper\n *\n * Manages a connection to a single MCP server and provides\n * a simplified API for tool calls, resource access, etc.\n */\nexport class McpClient {\n  private client: Client | null = null;\n  private transport: Transport | null = null;\n  private _serverInfo: McpServerInfo | null = null;\n  private options: Required<McpClientOptions>;\n  private serverName: string;\n  private config: McpServerConfig;\n\n  constructor(serverName: string, config: McpServerConfig, options?: McpClientOptions) {\n    this.serverName = serverName;\n    this.config = config;\n    this.options = { ...DEFAULT_OPTIONS, ...options };\n  }\n\n  /**\n   * Connect to the MCP server\n   */\n  async connect(): Promise<void> {\n    if (this.client && this.isConnected()) {\n      return;\n    }\n\n    try {\n      // Create the appropriate transport\n      this.transport = await this.createTransport();\n\n      // Create the MCP client\n      this.client = new Client(\n        {\n          name: this.options.clientName,\n          version: this.options.clientVersion,\n        },\n        {\n          capabilities: {\n            roots: { listChanged: true },\n          },\n        }\n      );\n\n      // Connect to the server\n      await this.client.connect(this.transport);\n\n      // Store server info\n      const serverVersion = this.client.getServerVersion();\n      const serverCapabilities = this.client.getServerCapabilities();\n\n      const info: McpServerInfo = {\n        name: this.serverName,\n        connected: true,\n      };\n\n      if (serverVersion?.version) {\n        info.version = serverVersion.version;\n      }\n\n      const caps = this.parseCapabilities(serverCapabilities);\n      if (caps) {\n        info.capabilities = caps;\n      }\n\n      const instructions = this.client.getInstructions();\n      if (instructions) {\n        info.instructions = instructions;\n      }\n\n      this._serverInfo = info;\n    } catch (error) {\n      throw new McpError(\n        `Failed to connect to MCP server \"${this.serverName}\": ${error instanceof Error ? error.message : String(error)}`,\n        'connection_failed',\n        this.serverName,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Disconnect from the MCP server\n   */\n  async disconnect(): Promise<void> {\n    if (this.transport) {\n      await this.transport.close();\n      this.transport = null;\n    }\n\n    this.client = null;\n\n    if (this._serverInfo) {\n      this._serverInfo.connected = false;\n    }\n  }\n\n  /**\n   * Check if connected to the server\n   */\n  isConnected(): boolean {\n    return this._serverInfo?.connected ?? false;\n  }\n\n  /**\n   * Get server information\n   */\n  getServerInfo(): McpServerInfo | null {\n    return this._serverInfo;\n  }\n\n  /**\n   * List available tools from the server\n   */\n  async listTools(): Promise<McpTool[]> {\n    const client = this.ensureConnected();\n\n    const result = await client.listTools();\n\n    return result.tools.map((tool) => {\n      // Build inputSchema with only defined properties\n      const inputSchema: McpTool['inputSchema'] = { type: 'object' };\n      if (tool.inputSchema.properties) {\n        inputSchema.properties = tool.inputSchema.properties as Record<string, unknown>;\n      }\n      if (tool.inputSchema.required) {\n        inputSchema.required = tool.inputSchema.required;\n      }\n\n      const mapped: McpTool = {\n        name: tool.name,\n        inputSchema,\n      };\n\n      if (tool.description) {\n        mapped.description = tool.description;\n      }\n\n      if (tool.annotations) {\n        const annotations: McpTool['annotations'] = {};\n        if (tool.annotations.title) annotations.title = tool.annotations.title;\n        if (tool.annotations.readOnlyHint !== undefined)\n          annotations.readOnlyHint = tool.annotations.readOnlyHint;\n        if (tool.annotations.destructiveHint !== undefined)\n          annotations.destructiveHint = tool.annotations.destructiveHint;\n        if (tool.annotations.idempotentHint !== undefined)\n          annotations.idempotentHint = tool.annotations.idempotentHint;\n        if (Object.keys(annotations).length > 0) {\n          mapped.annotations = annotations;\n        }\n      }\n\n      return mapped;\n    });\n  }\n\n  /**\n   * Call a tool on the server\n   */\n  async callTool(name: string, args?: Record<string, unknown>): Promise<McpToolResult> {\n    const client = this.ensureConnected();\n\n    try {\n      const result = await client.callTool({\n        name,\n        arguments: args,\n      });\n\n      // Handle the different result formats\n      if ('content' in result && Array.isArray(result.content)) {\n        const content: McpContent[] = [];\n\n        for (const c of result.content) {\n          if (typeof c === 'object' && c !== null && 'type' in c) {\n            const item = c as { type: string; [key: string]: unknown };\n            if (item.type === 'text' && typeof item.text === 'string') {\n              content.push({ type: 'text', text: item.text });\n            } else if (\n              item.type === 'image' &&\n              typeof item.data === 'string' &&\n              typeof item.mimeType === 'string'\n            ) {\n              content.push({ type: 'image', data: item.data, mimeType: item.mimeType });\n            } else if (item.type === 'resource' && typeof item.resource === 'object') {\n              const res = item.resource as {\n                uri: string;\n                text?: string;\n                blob?: string;\n                mimeType?: string;\n              };\n              const resourceContent: {\n                uri: string;\n                text?: string;\n                blob?: string;\n                mimeType?: string;\n              } = {\n                uri: res.uri,\n              };\n              if (res.text) resourceContent.text = res.text;\n              if (res.blob) resourceContent.blob = res.blob;\n              if (res.mimeType) resourceContent.mimeType = res.mimeType;\n              content.push({\n                type: 'resource',\n                resource: resourceContent,\n              });\n            } else {\n              // Default to text for unknown types\n              content.push({ type: 'text', text: JSON.stringify(c) });\n            }\n          }\n        }\n\n        const toolResult: McpToolResult = { content };\n\n        if (typeof result.isError === 'boolean') {\n          toolResult.isError = result.isError;\n        }\n\n        if (typeof result.structuredContent === 'object' && result.structuredContent !== null) {\n          toolResult.structuredContent = result.structuredContent as Record<string, unknown>;\n        }\n\n        return toolResult;\n      }\n\n      // Handle legacy toolResult format\n      if ('toolResult' in result) {\n        return {\n          content: [{ type: 'text', text: JSON.stringify(result.toolResult) }],\n        };\n      }\n\n      return {\n        content: [],\n      };\n    } catch (error) {\n      throw new McpError(\n        `Failed to call tool \"${name}\": ${error instanceof Error ? error.message : String(error)}`,\n        'protocol_error',\n        this.serverName,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * List available resources from the server\n   */\n  async listResources(): Promise<McpResource[]> {\n    const client = this.ensureConnected();\n\n    const result = await client.listResources();\n\n    return result.resources.map((resource) => {\n      const mapped: McpResource = {\n        uri: resource.uri,\n        name: resource.name,\n      };\n      if (resource.description) {\n        mapped.description = resource.description;\n      }\n      if (resource.mimeType) {\n        mapped.mimeType = resource.mimeType;\n      }\n      return mapped;\n    });\n  }\n\n  /**\n   * Read a resource from the server\n   */\n  async readResource(uri: string): Promise<string> {\n    const client = this.ensureConnected();\n\n    const result = await client.readResource({ uri });\n\n    // Return the first text content, or blob as base64\n    for (const content of result.contents) {\n      if ('text' in content) {\n        return content.text;\n      }\n      if ('blob' in content) {\n        return content.blob;\n      }\n    }\n\n    return '';\n  }\n\n  /**\n   * Create the appropriate transport for the server config\n   */\n  private async createTransport(): Promise<Transport> {\n    if (this.config.transport === 'stdio') {\n      return this.createStdioTransport(this.config);\n    }\n\n    // HTTP/SSE transports would be added here\n    throw new McpError(\n      `Unsupported transport type: ${this.config.transport}`,\n      'invalid_config',\n      this.serverName\n    );\n  }\n\n  /**\n   * Create a stdio transport for local MCP servers\n   */\n  private createStdioTransport(config: StdioServerConfig): Transport {\n    const params: {\n      command: string;\n      args?: string[];\n      env?: Record<string, string>;\n      cwd?: string;\n    } = {\n      command: config.command,\n    };\n\n    if (config.args) {\n      params.args = config.args;\n    }\n    if (config.env) {\n      params.env = config.env;\n    }\n    if (config.cwd) {\n      params.cwd = config.cwd;\n    }\n\n    return new StdioClientTransport(params);\n  }\n\n  /**\n   * Parse server capabilities into our format\n   */\n  private parseCapabilities(capabilities?: Record<string, unknown>): McpCapabilities | undefined {\n    if (!capabilities) return undefined;\n\n    return {\n      tools: !!capabilities.tools,\n      resources: !!capabilities.resources,\n      prompts: !!capabilities.prompts,\n      logging: !!capabilities.logging,\n    };\n  }\n\n  /**\n   * Ensure the client is connected and return the client instance\n   */\n  private ensureConnected(): Client {\n    if (!this.client || !this.isConnected()) {\n      throw new McpError(\n        `Not connected to MCP server \"${this.serverName}\"`,\n        'connection_closed',\n        this.serverName\n      );\n    }\n    return this.client;\n  }\n\n  /**\n   * Set server info (for mock/testing purposes)\n   */\n  protected setServerInfo(info: McpServerInfo): void {\n    this._serverInfo = info;\n  }\n}\n\n/**\n * Create a mock MCP client for testing\n */\nexport function createMockMcpClient(\n  serverName: string,\n  tools: McpTool[] = [],\n  resources: McpResource[] = []\n): McpClient {\n  // Create a client with in-memory transport for testing\n  const client = new McpClient(serverName, { transport: 'stdio', command: 'mock' });\n\n  // Store mock data\n  const mockTools = tools;\n  const mockResources = resources;\n\n  // Override connect to set up mock state\n  client.connect = async function (this: McpClient) {\n    const info: McpServerInfo = {\n      name: serverName,\n      version: '1.0.0',\n      connected: true,\n      capabilities: { tools: true, resources: true },\n    };\n    (this as McpClient & { setServerInfo(info: McpServerInfo): void }).setServerInfo(info);\n  };\n\n  client.listTools = async function () {\n    return mockTools;\n  };\n\n  client.listResources = async function () {\n    return mockResources;\n  };\n\n  return client;\n}\n","/**\n * Native GitHub Adapter\n *\n * Implements GitProviderAdapter using the GitHub CLI (gh).\n * Requires the gh CLI to be installed and authenticated.\n */\n\nimport { execFile } from 'child_process';\nimport { promisify } from 'util';\nimport type { GitProviderAdapter } from '../interfaces.js';\nimport type {\n  AdapterInfo,\n  PullRequest,\n  PullRequestQuery,\n  CreatePullRequestData,\n  Review,\n  CreateReviewData,\n  PullRequestStatus,\n  ReviewDecision,\n} from '../types.js';\nimport { AdapterError } from '../types.js';\n\nconst execFileAsync = promisify(execFile);\n\n/**\n * Options for creating a GitHub adapter\n */\nexport interface GitHubAdapterOptions {\n  /**\n   * Repository in owner/repo format\n   */\n  repository: string;\n\n  /**\n   * Path to gh CLI (default: 'gh')\n   */\n  ghPath?: string;\n}\n\n/**\n * Native GitHub adapter using gh CLI\n */\nexport class GitHubAdapter implements GitProviderAdapter {\n  private repository: string;\n  private ghPath: string;\n  private connected = false;\n  private owner: string;\n  private repo: string;\n\n  constructor(options: GitHubAdapterOptions) {\n    this.repository = options.repository;\n    this.ghPath = options.ghPath ?? 'gh';\n\n    const [owner, repo] = this.repository.split('/');\n    if (!owner || !repo) {\n      throw new AdapterError(\n        `Invalid repository format: ${this.repository}. Expected owner/repo`,\n        'invalid_config',\n        this.getInfo()\n      );\n    }\n    this.owner = owner;\n    this.repo = repo;\n  }\n\n  /**\n   * Get adapter info\n   */\n  getInfo(): AdapterInfo {\n    return {\n      type: 'git',\n      provider: 'github',\n      implementation: 'native',\n      connected: this.connected,\n    };\n  }\n\n  /**\n   * Check if connected\n   */\n  isConnected(): boolean {\n    return this.connected;\n  }\n\n  /**\n   * Connect (verify gh CLI is available and authenticated)\n   */\n  async connect(): Promise<void> {\n    try {\n      // Check gh is installed and authenticated\n      await this.gh(['auth', 'status']);\n\n      // Verify we can access the repository\n      await this.gh(['repo', 'view', this.repository, '--json', 'name']);\n\n      this.connected = true;\n    } catch (error) {\n      throw new AdapterError(\n        `Failed to connect to GitHub: ${error instanceof Error ? error.message : String(error)}`,\n        'connection_failed',\n        this.getInfo(),\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Disconnect\n   */\n  async disconnect(): Promise<void> {\n    this.connected = false;\n  }\n\n  /**\n   * Get a pull request by number\n   */\n  async getPullRequest(idOrNumber: string | number): Promise<PullRequest> {\n    this.ensureConnected();\n\n    try {\n      const result = await this.gh([\n        'pr',\n        'view',\n        String(idOrNumber),\n        '-R',\n        this.repository,\n        '--json',\n        'number,title,body,state,author,headRefName,baseRefName,createdAt,updatedAt,mergedAt,url,reviewRequests',\n      ]);\n\n      const data = JSON.parse(result);\n      return this.mapPullRequest(data);\n    } catch (error) {\n      if (this.isNotFoundError(error)) {\n        throw new AdapterError(\n          `Pull request #${idOrNumber} not found`,\n          'not_found',\n          this.getInfo()\n        );\n      }\n      throw this.wrapError(error, `Failed to get pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * List pull requests\n   */\n  async listPullRequests(query?: PullRequestQuery): Promise<PullRequest[]> {\n    this.ensureConnected();\n\n    try {\n      const args = [\n        'pr',\n        'list',\n        '-R',\n        this.repository,\n        '--json',\n        'number,title,body,state,author,headRefName,baseRefName,createdAt,updatedAt,url',\n      ];\n\n      // Map status to gh CLI state\n      if (query?.status) {\n        const states = Array.isArray(query.status) ? query.status : [query.status];\n        const ghStates = states\n          .map((s) => this.mapStatusToGh(s))\n          .filter((s): s is string => s !== undefined);\n        if (ghStates.length > 0 && ghStates[0]) {\n          args.push('--state', ghStates[0]);\n        }\n      }\n\n      if (query?.author) {\n        args.push('--author', query.author);\n      }\n\n      if (query?.limit) {\n        args.push('--limit', String(query.limit));\n      }\n\n      const result = await this.gh(args);\n      const data = JSON.parse(result) as unknown[];\n\n      return data.map((pr) => this.mapPullRequest(pr as Record<string, unknown>));\n    } catch (error) {\n      throw this.wrapError(error, 'Failed to list pull requests');\n    }\n  }\n\n  /**\n   * Create a pull request\n   */\n  async createPullRequest(data: CreatePullRequestData): Promise<PullRequest> {\n    this.ensureConnected();\n\n    try {\n      const args = [\n        'pr',\n        'create',\n        '-R',\n        this.repository,\n        '--head',\n        data.source_branch,\n        '--base',\n        data.target_branch,\n        '--title',\n        data.title,\n      ];\n\n      if (data.description) {\n        args.push('--body', data.description);\n      }\n\n      if (data.draft) {\n        args.push('--draft');\n      }\n\n      if (data.reviewers && data.reviewers.length > 0) {\n        args.push('--reviewer', data.reviewers.join(','));\n      }\n\n      // Create and get the PR details\n      const createResult = await this.gh(args);\n\n      // Parse the URL from the output to get the PR number\n      const urlMatch = createResult.match(/https:\\/\\/github\\.com\\/[^/]+\\/[^/]+\\/pull\\/(\\d+)/);\n      if (urlMatch?.[1]) {\n        return this.getPullRequest(parseInt(urlMatch[1], 10));\n      }\n\n      // Fallback: list to find the just-created PR\n      const prs = await this.listPullRequests({ limit: 1 });\n      const firstPr = prs[0];\n      if (firstPr) {\n        return firstPr;\n      }\n\n      throw new Error('Failed to retrieve created pull request');\n    } catch (error) {\n      throw this.wrapError(error, 'Failed to create pull request');\n    }\n  }\n\n  /**\n   * Update a pull request\n   */\n  async updatePullRequest(\n    idOrNumber: string | number,\n    data: Partial<CreatePullRequestData>\n  ): Promise<PullRequest> {\n    this.ensureConnected();\n\n    try {\n      const args = ['pr', 'edit', String(idOrNumber), '-R', this.repository];\n\n      if (data.title) {\n        args.push('--title', data.title);\n      }\n\n      if (data.description !== undefined) {\n        args.push('--body', data.description);\n      }\n\n      if (data.target_branch) {\n        args.push('--base', data.target_branch);\n      }\n\n      if (data.reviewers && data.reviewers.length > 0) {\n        args.push('--add-reviewer', data.reviewers.join(','));\n      }\n\n      await this.gh(args);\n\n      return this.getPullRequest(idOrNumber);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to update pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Merge a pull request\n   */\n  async mergePullRequest(\n    idOrNumber: string | number,\n    options?: { method?: 'merge' | 'squash' | 'rebase'; message?: string }\n  ): Promise<void> {\n    this.ensureConnected();\n\n    try {\n      const args = ['pr', 'merge', String(idOrNumber), '-R', this.repository];\n\n      const method = options?.method ?? 'merge';\n      args.push(`--${method}`);\n\n      if (options?.message) {\n        args.push('--body', options.message);\n      }\n\n      // Auto-confirm the merge\n      args.push('--delete-branch=false');\n\n      await this.gh(args);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to merge pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Close a pull request\n   */\n  async closePullRequest(idOrNumber: string | number): Promise<void> {\n    this.ensureConnected();\n\n    try {\n      await this.gh(['pr', 'close', String(idOrNumber), '-R', this.repository]);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to close pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Add a review to a pull request\n   */\n  async addReview(idOrNumber: string | number, review: CreateReviewData): Promise<Review> {\n    this.ensureConnected();\n\n    try {\n      const args = ['pr', 'review', String(idOrNumber), '-R', this.repository];\n\n      // Map decision to gh CLI flag\n      switch (review.decision) {\n        case 'approve':\n          args.push('--approve');\n          break;\n        case 'request_changes':\n          args.push('--request-changes');\n          break;\n        case 'comment':\n          args.push('--comment');\n          break;\n      }\n\n      if (review.body) {\n        args.push('--body', review.body);\n      }\n\n      await this.gh(args);\n\n      // Return the review data (gh doesn't return review ID)\n      const reviewResult: Review = {\n        id: `review-${Date.now()}`,\n        pull_request_id: String(idOrNumber),\n        author: 'current-user',\n        decision: review.decision,\n        body: review.body ?? '',\n        created_at: new Date().toISOString(),\n      };\n      return reviewResult;\n    } catch (error) {\n      throw this.wrapError(error, `Failed to add review to pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Get reviews for a pull request\n   */\n  async getReviews(idOrNumber: string | number): Promise<Review[]> {\n    this.ensureConnected();\n\n    try {\n      const result = await this.gh([\n        'pr',\n        'view',\n        String(idOrNumber),\n        '-R',\n        this.repository,\n        '--json',\n        'reviews',\n      ]);\n\n      const data = JSON.parse(result);\n      const reviews = data.reviews || [];\n\n      return reviews.map((r: Record<string, unknown>) => ({\n        id: String(r.id || `review-${Date.now()}`),\n        pull_request_id: String(idOrNumber),\n        author: (r.author as { login?: string })?.login || 'unknown',\n        decision: this.mapGhStateToDecision(String(r.state || 'COMMENTED')),\n        body: String(r.body || ''),\n        created_at: String(r.submittedAt || new Date().toISOString()),\n      }));\n    } catch (error) {\n      throw this.wrapError(error, `Failed to get reviews for pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Request reviewers for a pull request\n   */\n  async requestReviewers(idOrNumber: string | number, reviewers: string[]): Promise<void> {\n    this.ensureConnected();\n\n    try {\n      await this.gh([\n        'pr',\n        'edit',\n        String(idOrNumber),\n        '-R',\n        this.repository,\n        '--add-reviewer',\n        reviewers.join(','),\n      ]);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to request reviewers for pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Add a comment to a pull request\n   */\n  async addPullRequestComment(idOrNumber: string | number, comment: string): Promise<void> {\n    this.ensureConnected();\n\n    try {\n      await this.gh([\n        'pr',\n        'comment',\n        String(idOrNumber),\n        '-R',\n        this.repository,\n        '--body',\n        comment,\n      ]);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to add comment to pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Get the diff for a pull request\n   */\n  async getPullRequestDiff(idOrNumber: string | number): Promise<string> {\n    this.ensureConnected();\n\n    try {\n      return await this.gh(['pr', 'diff', String(idOrNumber), '-R', this.repository]);\n    } catch (error) {\n      throw this.wrapError(error, `Failed to get diff for pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Get files changed in a pull request\n   */\n  async getPullRequestFiles(idOrNumber: string | number): Promise<string[]> {\n    this.ensureConnected();\n\n    try {\n      const result = await this.gh([\n        'pr',\n        'view',\n        String(idOrNumber),\n        '-R',\n        this.repository,\n        '--json',\n        'files',\n      ]);\n\n      const data = JSON.parse(result);\n      const files = data.files || [];\n\n      return files.map((f: { path?: string }) => f.path || '');\n    } catch (error) {\n      throw this.wrapError(error, `Failed to get files for pull request #${idOrNumber}`);\n    }\n  }\n\n  /**\n   * Execute gh CLI command\n   */\n  private async gh(args: string[]): Promise<string> {\n    try {\n      const { stdout } = await execFileAsync(this.ghPath, args, {\n        maxBuffer: 10 * 1024 * 1024, // 10MB\n      });\n      return stdout;\n    } catch (error) {\n      const execError = error as { stderr?: string; message?: string };\n      throw new Error(execError.stderr || execError.message || 'Unknown gh error');\n    }\n  }\n\n  /**\n   * Ensure adapter is connected\n   */\n  private ensureConnected(): void {\n    if (!this.connected) {\n      throw new AdapterError(\n        'GitHub adapter is not connected. Call connect() first.',\n        'not_connected',\n        this.getInfo()\n      );\n    }\n  }\n\n  /**\n   * Map gh PR data to PullRequest type\n   */\n  private mapPullRequest(data: Record<string, unknown>): PullRequest {\n    const pr: PullRequest = {\n      id: String(data.number),\n      number: Number(data.number),\n      title: String(data.title || ''),\n      source_branch: String(data.headRefName || ''),\n      target_branch: String(data.baseRefName || ''),\n      status: this.mapGhStateToPrStatus(String(data.state || 'OPEN')),\n    };\n\n    if (data.body) {\n      pr.description = String(data.body);\n    }\n\n    if (data.author && typeof data.author === 'object') {\n      const login = (data.author as { login?: string }).login;\n      if (login) {\n        pr.author = login;\n      }\n    }\n\n    if (data.createdAt) {\n      pr.created_at = String(data.createdAt);\n    }\n\n    if (data.updatedAt) {\n      pr.updated_at = String(data.updatedAt);\n    }\n\n    if (data.mergedAt) {\n      pr.merged_at = String(data.mergedAt);\n    }\n\n    if (data.url) {\n      pr.url = String(data.url);\n    }\n\n    if (data.reviewRequests && Array.isArray(data.reviewRequests)) {\n      pr.reviewers = data.reviewRequests\n        .map((r: { login?: string }) => r.login || '')\n        .filter(Boolean);\n    }\n\n    return pr;\n  }\n\n  /**\n   * Map gh state to PullRequestStatus\n   */\n  private mapGhStateToPrStatus(state: string): PullRequestStatus {\n    switch (state.toUpperCase()) {\n      case 'OPEN':\n        return 'open';\n      case 'CLOSED':\n        return 'closed';\n      case 'MERGED':\n        return 'merged';\n      default:\n        return 'open';\n    }\n  }\n\n  /**\n   * Map PullRequestStatus to gh CLI state\n   */\n  private mapStatusToGh(status: PullRequestStatus): string | undefined {\n    switch (status) {\n      case 'open':\n        return 'open';\n      case 'closed':\n        return 'closed';\n      case 'merged':\n        return 'merged';\n      default:\n        return undefined;\n    }\n  }\n\n  /**\n   * Map gh review state to ReviewDecision\n   */\n  private mapGhStateToDecision(state: string): ReviewDecision {\n    switch (state.toUpperCase()) {\n      case 'APPROVED':\n        return 'approve';\n      case 'CHANGES_REQUESTED':\n        return 'request_changes';\n      case 'COMMENTED':\n      default:\n        return 'comment';\n    }\n  }\n\n  /**\n   * Check if error is a not found error\n   */\n  private isNotFoundError(error: unknown): boolean {\n    const message = error instanceof Error ? error.message : String(error);\n    return message.includes('Could not resolve') || message.includes('not found');\n  }\n\n  /**\n   * Wrap error in AdapterError\n   */\n  private wrapError(error: unknown, message: string): AdapterError {\n    return new AdapterError(\n      `${message}: ${error instanceof Error ? error.message : String(error)}`,\n      'operation_failed',\n      this.getInfo(),\n      error instanceof Error ? error : undefined\n    );\n  }\n}\n\n/**\n * Create a GitHub adapter\n */\nexport function createGitHubAdapter(options: GitHubAdapterOptions): GitHubAdapter {\n  return new GitHubAdapter(options);\n}\n","/**\n * Cache Types\n *\n * Type definitions for the shared context cache system.\n */\n\n/**\n * Source type for cached content\n */\nexport type CacheSource = 'confluence' | 'github' | 'notion' | 'local' | 'custom';\n\n/**\n * Cache entry status\n */\nexport type CacheStatus = 'valid' | 'stale' | 'expired' | 'error';\n\n/**\n * Metadata for a cached entry\n */\nexport interface CacheMetadata {\n  /**\n   * Unique key for this cache entry\n   */\n  key: string;\n\n  /**\n   * Source provider (e.g., 'confluence', 'github')\n   */\n  source: CacheSource;\n\n  /**\n   * Original source URL or identifier\n   */\n  sourceUrl: string;\n\n  /**\n   * When the content was cached\n   */\n  cachedAt: string;\n\n  /**\n   * When the content expires (ISO date string)\n   */\n  expiresAt: string;\n\n  /**\n   * ETag or version hash from source (for conditional fetching)\n   */\n  etag?: string;\n\n  /**\n   * Content hash for integrity checking\n   */\n  contentHash: string;\n\n  /**\n   * Size in bytes\n   */\n  size: number;\n\n  /**\n   * Content type (e.g., 'text/markdown', 'application/json')\n   */\n  contentType: string;\n\n  /**\n   * Original title or name\n   */\n  title?: string;\n\n  /**\n   * Last modified timestamp from source\n   */\n  lastModified?: string;\n\n  /**\n   * Custom tags for categorization\n   */\n  tags?: string[];\n}\n\n/**\n * A cached content entry\n */\nexport interface CacheEntry<T = string> {\n  /**\n   * Entry metadata\n   */\n  metadata: CacheMetadata;\n\n  /**\n   * The cached content\n   */\n  content: T;\n}\n\n/**\n * Options for cache operations\n */\nexport interface CacheOptions {\n  /**\n   * Time-to-live in seconds (default: 3600 = 1 hour)\n   */\n  ttl?: number;\n\n  /**\n   * Force refresh even if cached\n   */\n  forceRefresh?: boolean;\n\n  /**\n   * Skip cache and fetch directly\n   */\n  skipCache?: boolean;\n\n  /**\n   * Custom tags to apply\n   */\n  tags?: string[];\n}\n\n/**\n * Options for listing cache entries\n */\nexport interface CacheListOptions {\n  /**\n   * Filter by source\n   */\n  source?: CacheSource;\n\n  /**\n   * Filter by tag\n   */\n  tag?: string;\n\n  /**\n   * Filter by status\n   */\n  status?: CacheStatus;\n\n  /**\n   * Maximum entries to return\n   */\n  limit?: number;\n}\n\n/**\n * Cache statistics\n */\nexport interface CacheStats {\n  /**\n   * Total number of entries\n   */\n  totalEntries: number;\n\n  /**\n   * Total size in bytes\n   */\n  totalSize: number;\n\n  /**\n   * Number of valid entries\n   */\n  validEntries: number;\n\n  /**\n   * Number of stale entries\n   */\n  staleEntries: number;\n\n  /**\n   * Number of expired entries\n   */\n  expiredEntries: number;\n\n  /**\n   * Entries by source\n   */\n  bySource: Record<CacheSource, number>;\n\n  /**\n   * Oldest entry timestamp\n   */\n  oldestEntry?: string;\n\n  /**\n   * Newest entry timestamp\n   */\n  newestEntry?: string;\n}\n\n/**\n * Result of a sync operation\n */\nexport interface SyncResult {\n  /**\n   * Number of entries added\n   */\n  added: number;\n\n  /**\n   * Number of entries updated\n   */\n  updated: number;\n\n  /**\n   * Number of entries removed\n   */\n  removed: number;\n\n  /**\n   * Number of entries that failed to sync\n   */\n  failed: number;\n\n  /**\n   * Error messages for failed entries\n   */\n  errors: { key: string; error: string }[];\n\n  /**\n   * Duration of sync in milliseconds\n   */\n  duration: number;\n}\n\n/**\n * Cache error codes\n */\nexport type CacheErrorCode =\n  | 'not_found'\n  | 'expired'\n  | 'invalid_key'\n  | 'write_failed'\n  | 'read_failed'\n  | 'fetch_failed'\n  | 'invalid_config'\n  | 'storage_full';\n\n/**\n * Cache-specific error\n */\nexport class CacheError extends Error {\n  constructor(\n    message: string,\n    public readonly code: CacheErrorCode,\n    public readonly key?: string,\n    public override readonly cause?: Error\n  ) {\n    super(message);\n    this.name = 'CacheError';\n  }\n}\n\n/**\n * Default cache directory paths\n */\nexport const CACHE_PATHS = {\n  /**\n   * Root cache directory (relative to project root)\n   */\n  ROOT: '.coreai/cache',\n\n  /**\n   * Content storage directory\n   */\n  CONTENT: '.coreai/cache/content',\n\n  /**\n   * Metadata storage directory\n   */\n  METADATA: '.coreai/cache/metadata',\n\n  /**\n   * Index file for fast lookups\n   */\n  INDEX: '.coreai/cache/index.json',\n\n  /**\n   * Lock file for concurrent access\n   */\n  LOCK: '.coreai/cache/.lock',\n} as const;\n\n/**\n * Default cache configuration\n */\nexport const DEFAULT_CACHE_CONFIG = {\n  /**\n   * Default TTL in seconds (1 hour)\n   */\n  ttl: 3600,\n\n  /**\n   * Maximum cache size in bytes (100MB)\n   */\n  maxSize: 100 * 1024 * 1024,\n\n  /**\n   * Maximum number of entries\n   */\n  maxEntries: 1000,\n\n  /**\n   * Enable automatic cleanup of expired entries\n   */\n  autoCleanup: true,\n\n  /**\n   * Cleanup interval in seconds (1 hour)\n   */\n  cleanupInterval: 3600,\n} as const;\n","/**\n * File-based Cache Provider\n *\n * Implements CacheProvider using the local filesystem.\n * Stores content in files with separate metadata JSON files.\n */\n\nimport { promises as fs } from 'fs';\nimport { join, dirname } from 'path';\nimport { createHash } from 'crypto';\nimport type {\n  CacheEntry,\n  CacheMetadata,\n  CacheOptions,\n  CacheListOptions,\n  CacheStats,\n  CacheStatus,\n  CacheSource,\n} from './types.js';\nimport { CacheError, CACHE_PATHS, DEFAULT_CACHE_CONFIG } from './types.js';\nimport type { CacheProvider } from './interfaces.js';\n\n/**\n * No-op function for ignoring errors\n */\nfunction noop(): void {\n  // Intentionally empty\n}\n\n/**\n * Options for creating a file cache provider\n */\nexport interface FileCacheProviderOptions {\n  /**\n   * Base path for cache storage (project root)\n   */\n  basePath: string;\n\n  /**\n   * Default TTL in seconds\n   */\n  ttl?: number;\n\n  /**\n   * Maximum cache size in bytes\n   */\n  maxSize?: number;\n\n  /**\n   * Maximum number of entries\n   */\n  maxEntries?: number;\n}\n\n/**\n * Cache index structure for fast lookups\n */\ninterface CacheIndex {\n  version: number;\n  entries: Record<string, CacheIndexEntry>;\n  stats: {\n    totalSize: number;\n    entryCount: number;\n    lastCleanup: string | null;\n  };\n}\n\n/**\n * Index entry for quick access\n */\ninterface CacheIndexEntry {\n  key: string;\n  source: CacheSource;\n  cachedAt: string;\n  expiresAt: string;\n  size: number;\n  contentFile: string;\n  metadataFile: string;\n}\n\nconst INDEX_VERSION = 1;\n\n/**\n * File-based cache provider implementation\n */\nexport class FileCacheProvider implements CacheProvider {\n  private basePath: string;\n  private cachePath: string;\n  private contentPath: string;\n  private metadataPath: string;\n  private indexPath: string;\n  private ttl: number;\n  private maxSize: number;\n  private maxEntries: number;\n  private initialized = false;\n  private index: CacheIndex | null = null;\n\n  constructor(options: FileCacheProviderOptions) {\n    this.basePath = options.basePath;\n    this.cachePath = join(this.basePath, CACHE_PATHS.ROOT);\n    this.contentPath = join(this.basePath, CACHE_PATHS.CONTENT);\n    this.metadataPath = join(this.basePath, CACHE_PATHS.METADATA);\n    this.indexPath = join(this.basePath, CACHE_PATHS.INDEX);\n    this.ttl = options.ttl ?? DEFAULT_CACHE_CONFIG.ttl;\n    this.maxSize = options.maxSize ?? DEFAULT_CACHE_CONFIG.maxSize;\n    this.maxEntries = options.maxEntries ?? DEFAULT_CACHE_CONFIG.maxEntries;\n  }\n\n  /**\n   * Initialize the cache (create directories, load index)\n   */\n  async initialize(): Promise<void> {\n    if (this.initialized) return;\n\n    try {\n      // Create cache directories\n      await fs.mkdir(this.contentPath, { recursive: true });\n      await fs.mkdir(this.metadataPath, { recursive: true });\n\n      // Load or create index\n      this.index = await this.loadIndex();\n\n      // Save index to ensure file exists\n      await this.saveIndex();\n\n      this.initialized = true;\n    } catch (error) {\n      throw new CacheError(\n        `Failed to initialize cache: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        undefined,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Check if the cache is initialized\n   */\n  isInitialized(): boolean {\n    return this.initialized;\n  }\n\n  /**\n   * Get a cached entry by key\n   */\n  async get<T = string>(key: string, options?: CacheOptions): Promise<CacheEntry<T> | null> {\n    this.ensureInitialized();\n\n    if (options?.skipCache) {\n      return null;\n    }\n\n    const indexEntry = this.index?.entries[key];\n    if (!indexEntry) {\n      return null;\n    }\n\n    // Check expiration (unless force refresh)\n    if (!options?.forceRefresh) {\n      const status = this.getEntryStatus(indexEntry);\n      if (status === 'expired') {\n        return null;\n      }\n    }\n\n    try {\n      // Read metadata\n      const metadataContent = await fs.readFile(indexEntry.metadataFile, 'utf-8');\n      const metadata: CacheMetadata = JSON.parse(metadataContent);\n\n      // Read content\n      const contentRaw = await fs.readFile(indexEntry.contentFile, 'utf-8');\n      let content: T;\n\n      // Try to parse as JSON if content type indicates it\n      if (metadata.contentType.includes('json')) {\n        content = JSON.parse(contentRaw) as T;\n      } else {\n        content = contentRaw as T;\n      }\n\n      return { metadata, content };\n    } catch {\n      // Entry exists in index but files are missing - clean up\n      await this.delete(key);\n      return null;\n    }\n  }\n\n  /**\n   * Get the content only (convenience method)\n   */\n  async getContent<T = string>(key: string, options?: CacheOptions): Promise<T | null> {\n    const entry = await this.get<T>(key, options);\n    return entry?.content ?? null;\n  }\n\n  /**\n   * Set a cache entry\n   */\n  async set<T = string>(\n    key: string,\n    content: T,\n    metadata: Partial<CacheMetadata>,\n    options?: CacheOptions\n  ): Promise<void> {\n    this.ensureInitialized();\n\n    const now = new Date();\n    const ttl = options?.ttl ?? this.ttl;\n    const expiresAt = new Date(now.getTime() + ttl * 1000);\n\n    // Serialize content\n    const contentStr = typeof content === 'string' ? content : JSON.stringify(content, null, 2);\n    const contentHash = this.hashContent(contentStr);\n    const size = Buffer.byteLength(contentStr, 'utf-8');\n\n    // Generate file paths\n    const safeKey = this.sanitizeKey(key);\n    const contentFile = join(this.contentPath, `${safeKey}.cache`);\n    const metadataFile = join(this.metadataPath, `${safeKey}.json`);\n\n    // Build full metadata\n    const fullMetadata: CacheMetadata = {\n      key,\n      source: metadata.source ?? 'custom',\n      sourceUrl: metadata.sourceUrl ?? '',\n      cachedAt: now.toISOString(),\n      expiresAt: expiresAt.toISOString(),\n      contentHash,\n      size,\n      contentType:\n        metadata.contentType ?? (typeof content === 'string' ? 'text/plain' : 'application/json'),\n    };\n    // Conditionally add optional properties\n    if (metadata.etag) {\n      fullMetadata.etag = metadata.etag;\n    }\n    if (metadata.title) {\n      fullMetadata.title = metadata.title;\n    }\n    if (metadata.lastModified) {\n      fullMetadata.lastModified = metadata.lastModified;\n    }\n    const tags = options?.tags ?? metadata.tags;\n    if (tags) {\n      fullMetadata.tags = tags;\n    }\n\n    try {\n      // Ensure directories exist\n      await fs.mkdir(dirname(contentFile), { recursive: true });\n      await fs.mkdir(dirname(metadataFile), { recursive: true });\n\n      // Write files\n      await fs.writeFile(contentFile, contentStr, 'utf-8');\n      await fs.writeFile(metadataFile, JSON.stringify(fullMetadata, null, 2), 'utf-8');\n\n      // Update index\n      if (this.index) {\n        // Remove old size from stats if updating\n        const oldEntry = this.index.entries[key];\n        if (oldEntry) {\n          this.index.stats.totalSize -= oldEntry.size;\n        } else {\n          this.index.stats.entryCount++;\n        }\n\n        this.index.entries[key] = {\n          key,\n          source: fullMetadata.source,\n          cachedAt: fullMetadata.cachedAt,\n          expiresAt: fullMetadata.expiresAt,\n          size,\n          contentFile,\n          metadataFile,\n        };\n        this.index.stats.totalSize += size;\n\n        await this.saveIndex();\n      }\n    } catch (error) {\n      throw new CacheError(\n        `Failed to write cache entry: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        key,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Check if a key exists in the cache\n   */\n  async has(key: string): Promise<boolean> {\n    this.ensureInitialized();\n    return key in (this.index?.entries ?? {});\n  }\n\n  /**\n   * Delete a cache entry\n   */\n  async delete(key: string): Promise<boolean> {\n    this.ensureInitialized();\n\n    const indexEntry = this.index?.entries[key];\n    if (!indexEntry) {\n      return false;\n    }\n\n    try {\n      // Delete files (ignore if already missing)\n      await fs.unlink(indexEntry.contentFile).catch(noop);\n      await fs.unlink(indexEntry.metadataFile).catch(noop);\n\n      // Update index\n      if (this.index) {\n        this.index.stats.totalSize -= indexEntry.size;\n        this.index.stats.entryCount--;\n        // Remove entry from index using destructuring\n        const { [key]: _removed, ...remaining } = this.index.entries;\n        this.index.entries = remaining;\n        await this.saveIndex();\n      }\n\n      return true;\n    } catch (error) {\n      throw new CacheError(\n        `Failed to delete cache entry: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        key,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Get the status of a cache entry\n   */\n  async getStatus(key: string): Promise<CacheStatus | null> {\n    this.ensureInitialized();\n\n    const indexEntry = this.index?.entries[key];\n    if (!indexEntry) {\n      return null;\n    }\n\n    return this.getEntryStatus(indexEntry);\n  }\n\n  /**\n   * Get metadata for a cache entry\n   */\n  async getMetadata(key: string): Promise<CacheMetadata | null> {\n    this.ensureInitialized();\n\n    const indexEntry = this.index?.entries[key];\n    if (!indexEntry) {\n      return null;\n    }\n\n    try {\n      const content = await fs.readFile(indexEntry.metadataFile, 'utf-8');\n      return JSON.parse(content);\n    } catch {\n      return null;\n    }\n  }\n\n  /**\n   * Update metadata for a cache entry\n   */\n  async updateMetadata(key: string, metadata: Partial<CacheMetadata>): Promise<void> {\n    this.ensureInitialized();\n\n    const existing = await this.getMetadata(key);\n    if (!existing) {\n      throw new CacheError(`Cache entry not found: ${key}`, 'not_found', key);\n    }\n\n    const indexEntry = this.index?.entries[key];\n    if (!indexEntry) {\n      throw new CacheError(`Cache entry not found: ${key}`, 'not_found', key);\n    }\n\n    const updated: CacheMetadata = {\n      ...existing,\n      ...metadata,\n      key: existing.key, // Can't change key\n    };\n\n    try {\n      await fs.writeFile(indexEntry.metadataFile, JSON.stringify(updated, null, 2), 'utf-8');\n\n      // Update index if relevant fields changed\n      if (this.index && indexEntry) {\n        if (metadata.source) indexEntry.source = metadata.source;\n        if (metadata.expiresAt) indexEntry.expiresAt = metadata.expiresAt;\n        await this.saveIndex();\n      }\n    } catch (error) {\n      throw new CacheError(\n        `Failed to update metadata: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        key,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * List cache entries\n   */\n  async list(options?: CacheListOptions): Promise<CacheMetadata[]> {\n    this.ensureInitialized();\n\n    if (!this.index) return [];\n\n    let entries = Object.values(this.index.entries);\n\n    // Apply filters\n    if (options?.source) {\n      entries = entries.filter((e) => e.source === options.source);\n    }\n\n    if (options?.status) {\n      entries = entries.filter((e) => this.getEntryStatus(e) === options.status);\n    }\n\n    // Load full metadata for tag filtering and return\n    const metadataPromises = entries.map(async (e) => {\n      const metadata = await this.getMetadata(e.key);\n      return metadata;\n    });\n\n    let results = (await Promise.all(metadataPromises)).filter(\n      (m): m is CacheMetadata => m !== null\n    );\n\n    // Filter by tag if specified\n    if (options?.tag) {\n      const tag = options.tag;\n      results = results.filter((m) => m.tags?.includes(tag));\n    }\n\n    // Apply limit\n    if (options?.limit && results.length > options.limit) {\n      results = results.slice(0, options.limit);\n    }\n\n    return results;\n  }\n\n  /**\n   * Get cache statistics\n   */\n  async getStats(): Promise<CacheStats> {\n    this.ensureInitialized();\n\n    if (!this.index) {\n      return {\n        totalEntries: 0,\n        totalSize: 0,\n        validEntries: 0,\n        staleEntries: 0,\n        expiredEntries: 0,\n        bySource: {\n          confluence: 0,\n          github: 0,\n          notion: 0,\n          local: 0,\n          custom: 0,\n        },\n      };\n    }\n\n    const entries = Object.values(this.index.entries);\n    const bySource: Record<CacheSource, number> = {\n      confluence: 0,\n      github: 0,\n      notion: 0,\n      local: 0,\n      custom: 0,\n    };\n\n    let validEntries = 0;\n    let staleEntries = 0;\n    let expiredEntries = 0;\n    let oldestEntry: string | undefined;\n    let newestEntry: string | undefined;\n\n    for (const entry of entries) {\n      bySource[entry.source]++;\n\n      const status = this.getEntryStatus(entry);\n      if (status === 'valid') validEntries++;\n      else if (status === 'stale') staleEntries++;\n      else if (status === 'expired') expiredEntries++;\n\n      if (!oldestEntry || entry.cachedAt < oldestEntry) {\n        oldestEntry = entry.cachedAt;\n      }\n      if (!newestEntry || entry.cachedAt > newestEntry) {\n        newestEntry = entry.cachedAt;\n      }\n    }\n\n    const stats: CacheStats = {\n      totalEntries: this.index.stats.entryCount,\n      totalSize: this.index.stats.totalSize,\n      validEntries,\n      staleEntries,\n      expiredEntries,\n      bySource,\n    };\n\n    if (oldestEntry) stats.oldestEntry = oldestEntry;\n    if (newestEntry) stats.newestEntry = newestEntry;\n\n    return stats;\n  }\n\n  /**\n   * Clear all cache entries\n   */\n  async clear(): Promise<number> {\n    this.ensureInitialized();\n\n    if (!this.index) return 0;\n\n    const count = this.index.stats.entryCount;\n\n    try {\n      // Delete all content and metadata files\n      await fs.rm(this.contentPath, { recursive: true, force: true });\n      await fs.rm(this.metadataPath, { recursive: true, force: true });\n\n      // Recreate directories\n      await fs.mkdir(this.contentPath, { recursive: true });\n      await fs.mkdir(this.metadataPath, { recursive: true });\n\n      // Reset index\n      this.index = this.createEmptyIndex();\n      await this.saveIndex();\n\n      return count;\n    } catch (error) {\n      throw new CacheError(\n        `Failed to clear cache: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        undefined,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  /**\n   * Clear expired entries only\n   */\n  async clearExpired(): Promise<number> {\n    this.ensureInitialized();\n\n    if (!this.index) return 0;\n\n    const expiredKeys = Object.entries(this.index.entries)\n      .filter(([, entry]) => this.getEntryStatus(entry) === 'expired')\n      .map(([key]) => key);\n\n    for (const key of expiredKeys) {\n      await this.delete(key);\n    }\n\n    if (this.index) {\n      this.index.stats.lastCleanup = new Date().toISOString();\n      await this.saveIndex();\n    }\n\n    return expiredKeys.length;\n  }\n\n  /**\n   * Clear entries by source\n   */\n  async clearBySource(source: string): Promise<number> {\n    this.ensureInitialized();\n\n    if (!this.index) return 0;\n\n    const keys = Object.entries(this.index.entries)\n      .filter(([, entry]) => entry.source === source)\n      .map(([key]) => key);\n\n    for (const key of keys) {\n      await this.delete(key);\n    }\n\n    return keys.length;\n  }\n\n  /**\n   * Clear entries by tag\n   */\n  async clearByTag(tag: string): Promise<number> {\n    this.ensureInitialized();\n\n    const entries = await this.list({ tag });\n    for (const entry of entries) {\n      await this.delete(entry.key);\n    }\n\n    return entries.length;\n  }\n\n  // Private helpers\n\n  private ensureInitialized(): void {\n    if (!this.initialized) {\n      throw new CacheError('Cache not initialized. Call initialize() first.', 'invalid_config');\n    }\n  }\n\n  private async loadIndex(): Promise<CacheIndex> {\n    try {\n      const content = await fs.readFile(this.indexPath, 'utf-8');\n      const index = JSON.parse(content) as CacheIndex;\n\n      // Validate version\n      if (index.version !== INDEX_VERSION) {\n        // Index version mismatch - rebuild\n        return this.rebuildIndex();\n      }\n\n      return index;\n    } catch {\n      // Index doesn't exist or is invalid - create new one\n      return this.createEmptyIndex();\n    }\n  }\n\n  private async saveIndex(): Promise<void> {\n    if (!this.index) return;\n\n    try {\n      await fs.writeFile(this.indexPath, JSON.stringify(this.index, null, 2), 'utf-8');\n    } catch (error) {\n      throw new CacheError(\n        `Failed to save cache index: ${error instanceof Error ? error.message : String(error)}`,\n        'write_failed',\n        undefined,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  private createEmptyIndex(): CacheIndex {\n    return {\n      version: INDEX_VERSION,\n      entries: {},\n      stats: {\n        totalSize: 0,\n        entryCount: 0,\n        lastCleanup: null,\n      },\n    };\n  }\n\n  private async rebuildIndex(): Promise<CacheIndex> {\n    const index = this.createEmptyIndex();\n\n    try {\n      const metadataFiles = await fs.readdir(this.metadataPath);\n\n      for (const file of metadataFiles) {\n        if (!file.endsWith('.json')) continue;\n\n        try {\n          const metadataPath = join(this.metadataPath, file);\n          const content = await fs.readFile(metadataPath, 'utf-8');\n          const metadata: CacheMetadata = JSON.parse(content);\n\n          const safeKey = this.sanitizeKey(metadata.key);\n          const contentFile = join(this.contentPath, `${safeKey}.cache`);\n\n          // Verify content file exists\n          await fs.access(contentFile);\n\n          index.entries[metadata.key] = {\n            key: metadata.key,\n            source: metadata.source,\n            cachedAt: metadata.cachedAt,\n            expiresAt: metadata.expiresAt,\n            size: metadata.size,\n            contentFile,\n            metadataFile: metadataPath,\n          };\n\n          index.stats.totalSize += metadata.size;\n          index.stats.entryCount++;\n        } catch {\n          // Skip invalid entries\n        }\n      }\n    } catch {\n      // Metadata directory doesn't exist or is empty\n    }\n\n    return index;\n  }\n\n  private getEntryStatus(entry: CacheIndexEntry): CacheStatus {\n    const now = new Date();\n    const expiresAt = new Date(entry.expiresAt);\n    const cachedAt = new Date(entry.cachedAt);\n\n    if (now > expiresAt) {\n      return 'expired';\n    }\n\n    // Consider stale if more than 80% of TTL has passed\n    const totalTtl = expiresAt.getTime() - cachedAt.getTime();\n    const elapsed = now.getTime() - cachedAt.getTime();\n    if (elapsed > totalTtl * 0.8) {\n      return 'stale';\n    }\n\n    return 'valid';\n  }\n\n  private sanitizeKey(key: string): string {\n    // Create a safe filename from the key\n    return createHash('sha256').update(key).digest('hex').substring(0, 32);\n  }\n\n  private hashContent(content: string): string {\n    return createHash('sha256').update(content).digest('hex');\n  }\n}\n\n/**\n * Create a file cache provider\n */\nexport function createFileCacheProvider(options: FileCacheProviderOptions): FileCacheProvider {\n  return new FileCacheProvider(options);\n}\n","/**\n * Cache Manager\n *\n * Higher-level cache management that combines caching with remote fetching.\n * Implements cache-first resolution with remote fallback strategy.\n */\n\nimport type { CacheEntry, CacheMetadata, CacheOptions, CacheSource, SyncResult } from './types.js';\nimport { CacheError } from './types.js';\nimport type {\n  CacheProvider,\n  CacheManager as ICacheManager,\n  RemoteFetcher,\n  FetchOptions,\n  SyncOptions,\n} from './interfaces.js';\n\n/**\n * Options for creating a cache manager\n */\nexport interface CacheManagerOptions {\n  /**\n   * The underlying cache provider\n   */\n  cache: CacheProvider;\n\n  /**\n   * Default TTL in seconds\n   */\n  defaultTtl?: number;\n\n  /**\n   * Default source for new entries\n   */\n  defaultSource?: CacheSource;\n}\n\n/**\n * Cache manager implementation\n *\n * Provides cache-first resolution strategy:\n * 1. Check cache for valid entry\n * 2. If cached and valid, return cached content\n * 3. If stale or missing, fetch from remote\n * 4. Cache the fetched content\n * 5. Return the content\n */\nexport class CacheManager implements ICacheManager {\n  private cache: CacheProvider;\n  private fetchers = new Map<string, RemoteFetcher>();\n  private defaultTtl: number;\n  private defaultSource: CacheSource;\n\n  constructor(options: CacheManagerOptions) {\n    this.cache = options.cache;\n    this.defaultTtl = options.defaultTtl ?? 3600;\n    this.defaultSource = options.defaultSource ?? 'custom';\n  }\n\n  /**\n   * Get content with cache-first strategy\n   */\n  async getWithFallback<T = string>(\n    key: string,\n    url: string,\n    options?: CacheOptions & FetchOptions\n  ): Promise<CacheEntry<T>> {\n    // Try cache first (unless skipCache is set)\n    if (!options?.skipCache && !options?.forceRefresh) {\n      const cached = await this.cache.get<T>(key);\n      if (cached) {\n        const status = await this.cache.getStatus(key);\n        // Return if valid (not stale or expired)\n        if (status === 'valid') {\n          return cached;\n        }\n        // If stale, try to refresh but fall back to stale if fetch fails\n        if (status === 'stale') {\n          try {\n            return await this.fetchAndCache<T>(key, url, options);\n          } catch {\n            // Return stale content on fetch failure\n            return cached;\n          }\n        }\n      }\n    }\n\n    // Cache miss or forceRefresh - fetch from remote\n    return this.fetchAndCache<T>(key, url, options);\n  }\n\n  /**\n   * Sync all entries from a source\n   */\n  async syncSource(source: string, options?: SyncOptions): Promise<SyncResult> {\n    const startTime = Date.now();\n    const result: SyncResult = {\n      added: 0,\n      updated: 0,\n      removed: 0,\n      failed: 0,\n      errors: [],\n      duration: 0,\n    };\n\n    // Get all entries from this source\n    const entries = await this.cache.list({ source: source as CacheSource });\n\n    // Sync each entry\n    const concurrency = options?.concurrency ?? 5;\n    const chunks = this.chunkArray(entries, concurrency);\n\n    for (const chunk of chunks) {\n      const promises = chunk.map(async (entry) => {\n        try {\n          const fetcher = this.fetchers.get(source);\n          if (!fetcher) {\n            throw new Error(`No fetcher registered for source: ${source}`);\n          }\n\n          // Check if content has changed\n          const hasChanged = await fetcher.hasChanged(entry.sourceUrl, entry.etag);\n\n          if (hasChanged || options?.force) {\n            // Fetch and update\n            const fetchOptions: FetchOptions = {};\n            if (entry.etag) {\n              fetchOptions.etag = entry.etag;\n            }\n            const { content, metadata } = await fetcher.fetch(entry.sourceUrl, fetchOptions);\n\n            await this.cache.set(entry.key, content, {\n              ...entry,\n              ...metadata,\n            });\n\n            result.updated++;\n          }\n        } catch (error) {\n          result.failed++;\n          result.errors.push({\n            key: entry.key,\n            error: error instanceof Error ? error.message : String(error),\n          });\n\n          if (!options?.continueOnError) {\n            throw error;\n          }\n        }\n      });\n\n      await Promise.all(promises);\n    }\n\n    // Report final progress\n    if (options?.onProgress) {\n      options.onProgress(entries.length, entries.length);\n    }\n\n    result.duration = Date.now() - startTime;\n    return result;\n  }\n\n  /**\n   * Sync specific entries\n   */\n  async syncEntries(keys: string[], options?: SyncOptions): Promise<SyncResult> {\n    const startTime = Date.now();\n    const result: SyncResult = {\n      added: 0,\n      updated: 0,\n      removed: 0,\n      failed: 0,\n      errors: [],\n      duration: 0,\n    };\n\n    const concurrency = options?.concurrency ?? 5;\n    const chunks = this.chunkArray(keys, concurrency);\n\n    for (const chunk of chunks) {\n      const promises = chunk.map(async (key) => {\n        try {\n          const metadata = await this.cache.getMetadata(key);\n          if (!metadata) {\n            result.failed++;\n            result.errors.push({ key, error: 'Entry not found in cache' });\n            return;\n          }\n\n          const fetcher = this.fetchers.get(metadata.source);\n          if (!fetcher) {\n            result.failed++;\n            result.errors.push({ key, error: `No fetcher for source: ${metadata.source}` });\n            return;\n          }\n\n          // Check if content has changed\n          const hasChanged = await fetcher.hasChanged(metadata.sourceUrl, metadata.etag);\n\n          if (hasChanged || options?.force) {\n            const fetchOpts: FetchOptions = {};\n            if (metadata.etag) {\n              fetchOpts.etag = metadata.etag;\n            }\n            const { content, metadata: newMeta } = await fetcher.fetch(\n              metadata.sourceUrl,\n              fetchOpts\n            );\n\n            await this.cache.set(key, content, {\n              ...metadata,\n              ...newMeta,\n            });\n\n            result.updated++;\n          }\n        } catch (error) {\n          result.failed++;\n          result.errors.push({\n            key,\n            error: error instanceof Error ? error.message : String(error),\n          });\n\n          if (!options?.continueOnError) {\n            throw error;\n          }\n        }\n      });\n\n      await Promise.all(promises);\n    }\n\n    // Report final progress\n    if (options?.onProgress) {\n      options.onProgress(keys.length, keys.length);\n    }\n\n    result.duration = Date.now() - startTime;\n    return result;\n  }\n\n  /**\n   * Register a fetcher for a source\n   */\n  registerFetcher(source: string, fetcher: RemoteFetcher): void {\n    this.fetchers.set(source, fetcher);\n  }\n\n  /**\n   * Get the underlying cache provider\n   */\n  getCache(): CacheProvider {\n    return this.cache;\n  }\n\n  /**\n   * Check if a fetcher is registered for a source\n   */\n  hasFetcher(source: string): boolean {\n    return this.fetchers.has(source);\n  }\n\n  /**\n   * Get all registered sources\n   */\n  getRegisteredSources(): string[] {\n    return Array.from(this.fetchers.keys());\n  }\n\n  // Private helpers\n\n  private async fetchAndCache<T>(\n    key: string,\n    url: string,\n    options?: CacheOptions & FetchOptions\n  ): Promise<CacheEntry<T>> {\n    // Determine source from URL\n    const source = this.getSourceFromUrl(url);\n    const fetcher = this.fetchers.get(source);\n\n    if (!fetcher) {\n      throw new CacheError(\n        `No fetcher registered for source: ${source}. Register one with registerFetcher().`,\n        'fetch_failed',\n        key\n      );\n    }\n\n    try {\n      // Fetch from remote\n      const fetchOpts: FetchOptions = {};\n      if (options?.timeout) {\n        fetchOpts.timeout = options.timeout;\n      }\n      if (options?.headers) {\n        fetchOpts.headers = options.headers;\n      }\n      const { content, metadata } = await fetcher.fetch(url, fetchOpts);\n\n      // Build full metadata\n      const fullMetadata: Partial<CacheMetadata> = {\n        source: source as CacheSource,\n        sourceUrl: url,\n        contentType: metadata.contentType ?? 'text/plain',\n      };\n      if (metadata.etag) {\n        fullMetadata.etag = metadata.etag;\n      }\n      if (metadata.title) {\n        fullMetadata.title = metadata.title;\n      }\n      if (metadata.lastModified) {\n        fullMetadata.lastModified = metadata.lastModified;\n      }\n      if (options?.tags) {\n        fullMetadata.tags = options.tags;\n      }\n\n      // Cache the content\n      const cacheOpts: CacheOptions = {\n        ttl: options?.ttl ?? this.defaultTtl,\n      };\n      if (options?.tags) {\n        cacheOpts.tags = options.tags;\n      }\n      await this.cache.set(key, content, fullMetadata, cacheOpts);\n\n      // Return the entry\n      const entry = await this.cache.get<T>(key);\n      if (!entry) {\n        throw new CacheError('Failed to retrieve cached entry after write', 'read_failed', key);\n      }\n\n      return entry;\n    } catch (error) {\n      if (error instanceof CacheError) {\n        throw error;\n      }\n      throw new CacheError(\n        `Failed to fetch content: ${error instanceof Error ? error.message : String(error)}`,\n        'fetch_failed',\n        key,\n        error instanceof Error ? error : undefined\n      );\n    }\n  }\n\n  private getSourceFromUrl(url: string): string {\n    try {\n      const parsed = new URL(url);\n      const hostname = parsed.hostname.toLowerCase();\n\n      // Map common hostnames to sources\n      if (hostname.includes('confluence') || hostname.includes('atlassian.net')) {\n        return 'confluence';\n      }\n      if (hostname.includes('github.com') || hostname.includes('github')) {\n        return 'github';\n      }\n      if (hostname.includes('notion.so') || hostname.includes('notion')) {\n        return 'notion';\n      }\n\n      // Default to custom\n      return this.defaultSource;\n    } catch {\n      // Invalid URL, might be a file path\n      return 'local';\n    }\n  }\n\n  private chunkArray<T>(array: T[], size: number): T[][] {\n    const chunks: T[][] = [];\n    for (let i = 0; i < array.length; i += size) {\n      chunks.push(array.slice(i, i + size));\n    }\n    return chunks;\n  }\n}\n\n/**\n * Create a cache manager\n */\nexport function createCacheManager(options: CacheManagerOptions): CacheManager {\n  return new CacheManager(options);\n}\n","/**\n * Context Loader\n *\n * Loads shared context from remote documentation providers with cache-first resolution.\n * Handles first-run scenarios when cache is empty.\n */\n\nimport type { CacheManager, CacheOptions, FetchOptions } from '../cache/index.js';\nimport type { CacheEntry, CacheMetadata } from '../cache/types.js';\n\n/**\n * Context source definition\n */\nexport interface ContextSource {\n  /**\n   * Unique identifier for this context\n   */\n  key: string;\n\n  /**\n   * Remote URL to fetch from\n   */\n  url: string;\n\n  /**\n   * Optional title for the context\n   */\n  title?: string;\n\n  /**\n   * Optional tags for categorization\n   */\n  tags?: string[];\n\n  /**\n   * Whether this context is required (fail if cannot load)\n   */\n  required?: boolean;\n}\n\n/**\n * Context load result\n */\nexport interface ContextLoadResult {\n  /**\n   * Successfully loaded contexts\n   */\n  loaded: {\n    key: string;\n    content: string;\n    fromCache: boolean;\n    metadata: CacheMetadata;\n  }[];\n\n  /**\n   * Failed contexts\n   */\n  failed: {\n    key: string;\n    error: string;\n    required: boolean;\n  }[];\n\n  /**\n   * Total duration in milliseconds\n   */\n  duration: number;\n}\n\n/**\n * Options for the context loader\n */\nexport interface ContextLoaderOptions {\n  /**\n   * The cache manager to use\n   */\n  cacheManager: CacheManager;\n\n  /**\n   * Default TTL for cached contexts (seconds)\n   */\n  defaultTtl?: number;\n\n  /**\n   * Whether to fail on any required context failure\n   */\n  failOnRequired?: boolean;\n\n  /**\n   * Maximum concurrent fetches\n   */\n  concurrency?: number;\n}\n\n/**\n * Options for loading contexts\n */\nexport interface LoadOptions extends CacheOptions, FetchOptions {\n  /**\n   * Continue loading other contexts if one fails\n   */\n  continueOnError?: boolean;\n\n  /**\n   * Progress callback\n   */\n  onProgress?: (loaded: number, total: number, current: string) => void;\n}\n\n/**\n * Context Loader\n *\n * Provides cache-first context resolution with graceful degradation\n * for first-run scenarios when the cache is empty.\n */\nexport class ContextLoader {\n  private cacheManager: CacheManager;\n  private defaultTtl: number;\n  private failOnRequired: boolean;\n  private concurrency: number;\n\n  constructor(options: ContextLoaderOptions) {\n    this.cacheManager = options.cacheManager;\n    this.defaultTtl = options.defaultTtl ?? 3600;\n    this.failOnRequired = options.failOnRequired ?? true;\n    this.concurrency = options.concurrency ?? 5;\n  }\n\n  /**\n   * Load a single context\n   */\n  async load(source: ContextSource, options?: LoadOptions): Promise<CacheEntry<string>> {\n    try {\n      const cacheOptions: CacheOptions & FetchOptions = {\n        ...options,\n        ttl: options?.ttl ?? this.defaultTtl,\n      };\n      if (source.tags) {\n        cacheOptions.tags = source.tags;\n      }\n      const entry = await this.cacheManager.getWithFallback<string>(\n        source.key,\n        source.url,\n        cacheOptions\n      );\n\n      return entry;\n    } catch (error) {\n      const message = error instanceof Error ? error.message : String(error);\n\n      if (source.required && this.failOnRequired) {\n        throw new Error(`Failed to load required context \"${source.key}\": ${message}`);\n      }\n\n      throw error;\n    }\n  }\n\n  /**\n   * Load multiple contexts\n   */\n  async loadMany(sources: ContextSource[], options?: LoadOptions): Promise<ContextLoadResult> {\n    const startTime = Date.now();\n    const result: ContextLoadResult = {\n      loaded: [],\n      failed: [],\n      duration: 0,\n    };\n\n    // Track which entries were loaded from cache vs fetched\n    const cacheStatuses = new Map<string, boolean>();\n\n    // Check cache status for all keys first\n    for (const source of sources) {\n      const status = await this.cacheManager.getCache().getStatus(source.key);\n      cacheStatuses.set(source.key, status === 'valid');\n    }\n\n    // Process in chunks for concurrency control\n    const chunks = this.chunkArray(sources, this.concurrency);\n\n    let completed = 0;\n    for (const chunk of chunks) {\n      const promises = chunk.map(async (source) => {\n        try {\n          const itemCacheOptions: CacheOptions & FetchOptions = {\n            ...options,\n            ttl: options?.ttl ?? this.defaultTtl,\n          };\n          if (source.tags) {\n            itemCacheOptions.tags = source.tags;\n          }\n          const entry = await this.cacheManager.getWithFallback<string>(\n            source.key,\n            source.url,\n            itemCacheOptions\n          );\n\n          result.loaded.push({\n            key: source.key,\n            content: entry.content,\n            fromCache: cacheStatuses.get(source.key) ?? false,\n            metadata: entry.metadata,\n          });\n        } catch (error) {\n          const message = error instanceof Error ? error.message : String(error);\n          result.failed.push({\n            key: source.key,\n            error: message,\n            required: source.required ?? false,\n          });\n\n          if (source.required && this.failOnRequired && !options?.continueOnError) {\n            throw new Error(`Failed to load required context \"${source.key}\": ${message}`);\n          }\n        }\n      });\n\n      await Promise.all(promises);\n\n      completed += chunk.length;\n      if (options?.onProgress) {\n        const currentKey = chunk[chunk.length - 1]?.key ?? '';\n        options.onProgress(completed, sources.length, currentKey);\n      }\n    }\n\n    result.duration = Date.now() - startTime;\n\n    // Check for required failures\n    if (this.failOnRequired && !options?.continueOnError) {\n      const requiredFailures = result.failed.filter((f) => f.required);\n      if (requiredFailures.length > 0) {\n        throw new Error(\n          `Failed to load ${requiredFailures.length} required context(s): ${requiredFailures.map((f) => f.key).join(', ')}`\n        );\n      }\n    }\n\n    return result;\n  }\n\n  /**\n   * Load contexts by tag\n   */\n  async loadByTag(tag: string, _options?: LoadOptions): Promise<ContextLoadResult> {\n    const startTime = Date.now();\n    const result: ContextLoadResult = {\n      loaded: [],\n      failed: [],\n      duration: 0,\n    };\n\n    // Get all cached entries with this tag\n    const entries = await this.cacheManager.getCache().list({ tag });\n\n    for (const entry of entries) {\n      try {\n        const cached = await this.cacheManager.getCache().get<string>(entry.key);\n        if (cached) {\n          result.loaded.push({\n            key: entry.key,\n            content: cached.content,\n            fromCache: true,\n            metadata: cached.metadata,\n          });\n        }\n      } catch (error) {\n        result.failed.push({\n          key: entry.key,\n          error: error instanceof Error ? error.message : String(error),\n          required: false,\n        });\n      }\n    }\n\n    result.duration = Date.now() - startTime;\n    return result;\n  }\n\n  /**\n   * Refresh all contexts (sync from remote)\n   */\n  async refresh(sources: ContextSource[], options?: LoadOptions): Promise<ContextLoadResult> {\n    return this.loadMany(sources, {\n      ...options,\n      forceRefresh: true,\n    });\n  }\n\n  /**\n   * Check if all required contexts are available (cached or fetchable)\n   */\n  async checkAvailability(\n    sources: ContextSource[]\n  ): Promise<{ available: string[]; missing: string[]; errors: string[] }> {\n    const available: string[] = [];\n    const missing: string[] = [];\n    const errors: string[] = [];\n\n    for (const source of sources) {\n      try {\n        // Check if cached\n        const hasCached = await this.cacheManager.getCache().has(source.key);\n        if (hasCached) {\n          available.push(source.key);\n          continue;\n        }\n\n        // Check if fetcher is available\n        const url = new URL(source.url);\n        const source_type = this.getSourceFromHostname(url.hostname);\n        if (this.cacheManager.hasFetcher(source_type)) {\n          missing.push(source.key); // Can be fetched but not cached\n        } else {\n          errors.push(`${source.key}: No fetcher for ${source_type}`);\n        }\n      } catch (error) {\n        errors.push(`${source.key}: ${error instanceof Error ? error.message : String(error)}`);\n      }\n    }\n\n    return { available, missing, errors };\n  }\n\n  /**\n   * Get the cache manager\n   */\n  getCacheManager(): CacheManager {\n    return this.cacheManager;\n  }\n\n  // Private helpers\n\n  private getSourceFromHostname(hostname: string): string {\n    const lower = hostname.toLowerCase();\n    if (lower.includes('confluence') || lower.includes('atlassian.net')) return 'confluence';\n    if (lower.includes('github.com') || lower.includes('github')) return 'github';\n    if (lower.includes('notion.so') || lower.includes('notion')) return 'notion';\n    return 'custom';\n  }\n\n  private chunkArray<T>(array: T[], size: number): T[][] {\n    const chunks: T[][] = [];\n    for (let i = 0; i < array.length; i += size) {\n      chunks.push(array.slice(i, i + size));\n    }\n    return chunks;\n  }\n}\n\n/**\n * Create a context loader\n */\nexport function createContextLoader(options: ContextLoaderOptions): ContextLoader {\n  return new ContextLoader(options);\n}\n","/**\n * Command Context\n *\n * Runtime context for command execution with graceful degradation support.\n */\n\nimport type { ResolvedCoreAIConfig } from '../config/types.js';\nimport type { AdapterType } from '../adapters/types.js';\nimport type { AdapterFactory } from '../adapters/factory.js';\nimport { createAdapterFactory } from '../adapters/factory.js';\nimport { loadConfig, configExists } from '../config/loader.js';\nimport type { CommandContext } from './types.js';\n\n/**\n * Options for creating a command context\n */\nexport interface CreateContextOptions {\n  /**\n   * Project root directory\n   */\n  projectRoot?: string;\n\n  /**\n   * Pre-loaded configuration (if already loaded)\n   */\n  config?: ResolvedCoreAIConfig;\n\n  /**\n   * Pre-created adapter factory (if already created)\n   */\n  adapterFactory?: AdapterFactory;\n}\n\n/**\n * Create a command execution context\n *\n * Handles configuration loading and adapter factory creation with graceful fallbacks.\n */\nexport function createCommandContext(options: CreateContextOptions = {}): CommandContext {\n  const projectRoot = options.projectRoot ?? process.cwd();\n\n  // Load config if not provided\n  let config: ResolvedCoreAIConfig | null = options.config ?? null;\n  if (!config && configExists(projectRoot)) {\n    try {\n      config = loadConfig(projectRoot);\n    } catch {\n      // Config loading failed, continue without config\n      config = null;\n    }\n  }\n\n  // Create adapter factory if config is available and factory not provided\n  let adapterFactory: AdapterFactory | null = options.adapterFactory ?? null;\n  if (!adapterFactory && config) {\n    try {\n      adapterFactory = createAdapterFactory(config);\n    } catch {\n      // Factory creation failed, continue without adapters\n      adapterFactory = null;\n    }\n  }\n\n  return {\n    config,\n    adapterFactory,\n    projectRoot,\n\n    hasIntegration(type: AdapterType): boolean {\n      if (!adapterFactory) return false;\n      return adapterFactory.hasIntegration(type);\n    },\n\n    async getAdapterSafe<T>(type: AdapterType): Promise<T | null> {\n      if (!adapterFactory) return null;\n      if (!adapterFactory.hasIntegration(type)) return null;\n\n      try {\n        const adapter = await adapterFactory.getAdapter(type);\n        return adapter as T;\n      } catch {\n        // Adapter creation failed, return null for graceful degradation\n        return null;\n      }\n    },\n  };\n}\n\n/**\n * Cleanup resources in a command context\n */\nexport async function cleanupContext(context: CommandContext): Promise<void> {\n  if (context.adapterFactory) {\n    await context.adapterFactory.disconnectAll();\n  }\n}\n\n/**\n * Execute a function with automatic context cleanup\n */\nexport async function withContext<T>(\n  options: CreateContextOptions,\n  fn: (context: CommandContext) => Promise<T>\n): Promise<T> {\n  const context = createCommandContext(options);\n  try {\n    return await fn(context);\n  } finally {\n    await cleanupContext(context);\n  }\n}\n","/**\n * Command Registry\n *\n * Central registry for command registration and discovery.\n */\n\nimport type {\n  CommandDefinition,\n  CommandMetadata,\n  MarkdownCommand,\n  RegistryEntry,\n  CommandCategory,\n  IntegrationDependency,\n} from './types.js';\nimport type { AdapterFactory } from '../adapters/factory.js';\n\n/**\n * Command Registry\n *\n * Manages registration and lookup of commands.\n */\nexport class CommandRegistry {\n  private commands = new Map<string, RegistryEntry>();\n  private adapterFactory: AdapterFactory | null = null;\n\n  /**\n   * Set the adapter factory for dependency checking\n   */\n  setAdapterFactory(factory: AdapterFactory | null): void {\n    this.adapterFactory = factory;\n    // Re-evaluate availability of all commands\n    this.updateAvailability();\n  }\n\n  /**\n   * Register a programmatic command\n   */\n  register(definition: CommandDefinition): void {\n    const metadata: CommandMetadata = {\n      name: definition.name,\n      description: definition.description,\n      category: definition.category,\n      dependencies: definition.dependencies ?? [],\n      sourcePath: '<programmatic>',\n      available: true,\n    };\n\n    // Check availability\n    this.checkAvailability(metadata);\n\n    this.commands.set(definition.name, {\n      metadata,\n      definition,\n      source: 'programmatic',\n    });\n  }\n\n  /**\n   * Register a markdown command\n   */\n  registerMarkdown(command: MarkdownCommand): void {\n    // Check availability\n    this.checkAvailability(command.metadata);\n\n    this.commands.set(command.metadata.name, {\n      metadata: command.metadata,\n      markdownCommand: command,\n      source: 'markdown',\n    });\n  }\n\n  /**\n   * Register multiple commands\n   */\n  registerAll(definitions: CommandDefinition[]): void {\n    for (const def of definitions) {\n      this.register(def);\n    }\n  }\n\n  /**\n   * Register multiple markdown commands\n   */\n  registerAllMarkdown(commands: MarkdownCommand[]): void {\n    for (const cmd of commands) {\n      this.registerMarkdown(cmd);\n    }\n  }\n\n  /**\n   * Unregister a command\n   */\n  unregister(name: string): boolean {\n    return this.commands.delete(name);\n  }\n\n  /**\n   * Get a command by name\n   */\n  get(name: string): RegistryEntry | undefined {\n    return this.commands.get(name);\n  }\n\n  /**\n   * Check if a command exists\n   */\n  has(name: string): boolean {\n    return this.commands.has(name);\n  }\n\n  /**\n   * Get all registered commands\n   */\n  getAll(): RegistryEntry[] {\n    return Array.from(this.commands.values());\n  }\n\n  /**\n   * Get available commands (dependencies satisfied)\n   */\n  getAvailable(): RegistryEntry[] {\n    return this.getAll().filter((entry) => entry.metadata.available);\n  }\n\n  /**\n   * Get unavailable commands\n   */\n  getUnavailable(): RegistryEntry[] {\n    return this.getAll().filter((entry) => !entry.metadata.available);\n  }\n\n  /**\n   * Get commands by category\n   */\n  getByCategory(category: CommandCategory): RegistryEntry[] {\n    return this.getAll().filter((entry) => entry.metadata.category === category);\n  }\n\n  /**\n   * Get command names\n   */\n  getNames(): string[] {\n    return Array.from(this.commands.keys());\n  }\n\n  /**\n   * Clear all registered commands\n   */\n  clear(): void {\n    this.commands.clear();\n  }\n\n  /**\n   * Get the number of registered commands\n   */\n  get size(): number {\n    return this.commands.size;\n  }\n\n  /**\n   * Check and update availability for a command metadata\n   */\n  private checkAvailability(metadata: CommandMetadata): void {\n    const missingDeps = this.getMissingDependencies(metadata.dependencies);\n\n    if (missingDeps.length > 0) {\n      const requiredMissing = missingDeps.filter((d) => d.required);\n      if (requiredMissing.length > 0) {\n        metadata.available = false;\n        metadata.unavailableReason = `Missing required integrations: ${requiredMissing.map((d) => d.type).join(', ')}`;\n      } else {\n        // Optional deps missing, still available but may degrade\n        metadata.available = true;\n      }\n    } else {\n      metadata.available = true;\n      delete metadata.unavailableReason;\n    }\n  }\n\n  /**\n   * Get missing dependencies\n   */\n  private getMissingDependencies(dependencies: IntegrationDependency[]): IntegrationDependency[] {\n    const factory = this.adapterFactory;\n    if (!factory) {\n      // No adapter factory, assume all required deps are missing\n      return dependencies.filter((d) => d.required);\n    }\n\n    return dependencies.filter((dep) => !factory.hasIntegration(dep.type));\n  }\n\n  /**\n   * Update availability for all commands\n   */\n  private updateAvailability(): void {\n    for (const entry of this.commands.values()) {\n      this.checkAvailability(entry.metadata);\n    }\n  }\n\n  /**\n   * Get dependency status for a command\n   */\n  getDependencyStatus(name: string): {\n    satisfied: IntegrationDependency[];\n    missing: IntegrationDependency[];\n  } | null {\n    const entry = this.commands.get(name);\n    if (!entry) return null;\n\n    const deps = entry.metadata.dependencies;\n    const missing = this.getMissingDependencies(deps);\n    const satisfied = deps.filter((d) => !missing.includes(d));\n\n    return { satisfied, missing };\n  }\n}\n\n/**\n * Create a new command registry\n */\nexport function createCommandRegistry(): CommandRegistry {\n  return new CommandRegistry();\n}\n\n/**\n * Global command registry instance\n */\nlet globalRegistry: CommandRegistry | null = null;\n\n/**\n * Get or create the global command registry\n */\nexport function getGlobalRegistry(): CommandRegistry {\n  if (!globalRegistry) {\n    globalRegistry = new CommandRegistry();\n  }\n  return globalRegistry;\n}\n\n/**\n * Reset the global registry (primarily for testing)\n */\nexport function resetGlobalRegistry(): void {\n  globalRegistry = null;\n}\n","/**\n * Command Loader\n *\n * Loads commands from markdown files in the coreai/commands/ directory.\n */\n\nimport { promises as fs } from 'fs';\nimport { join, basename, dirname, relative } from 'path';\nimport type {\n  CommandMetadata,\n  MarkdownCommand,\n  CommandCategory,\n  IntegrationDependency,\n  CommandLoaderOptions,\n  CommandLoadResult,\n} from './types.js';\nimport type { AdapterType } from '../adapters/types.js';\n\n/**\n * Frontmatter data from markdown file\n */\ninterface CommandFrontmatter {\n  description?: string;\n  'argument-hint'?: string;\n  requires?: string[];\n  optional?: string[];\n}\n\n/**\n * Parse YAML-like frontmatter from markdown content\n */\nfunction parseFrontmatter(content: string): { frontmatter: CommandFrontmatter; body: string } {\n  const match = content.match(/^---\\r?\\n([\\s\\S]*?)\\r?\\n---\\r?\\n([\\s\\S]*)$/);\n\n  if (!match) {\n    return { frontmatter: {}, body: content };\n  }\n\n  const frontmatterText = match[1] ?? '';\n  const body = match[2] ?? '';\n\n  // Simple YAML-like parsing (key: value)\n  const frontmatter: CommandFrontmatter = {};\n  const lines = frontmatterText.split(/\\r?\\n/);\n\n  for (const line of lines) {\n    const colonIndex = line.indexOf(':');\n    if (colonIndex === -1) continue;\n\n    const key = line.slice(0, colonIndex).trim();\n    let value = line.slice(colonIndex + 1).trim();\n\n    // Handle arrays (simple format: [item1, item2])\n    if (value.startsWith('[') && value.endsWith(']')) {\n      const arrayContent = value.slice(1, -1);\n      const items = arrayContent.split(',').map((s) => s.trim().replace(/['\"]/g, ''));\n      (frontmatter as Record<string, unknown>)[key] = items;\n    } else {\n      // Remove quotes if present\n      if (\n        (value.startsWith('\"') && value.endsWith('\"')) ||\n        (value.startsWith(\"'\") && value.endsWith(\"'\"))\n      ) {\n        value = value.slice(1, -1);\n      }\n      (frontmatter as Record<string, unknown>)[key] = value;\n    }\n  }\n\n  return { frontmatter, body };\n}\n\n/**\n * Parse markdown sections\n */\nfunction parseSections(body: string): MarkdownCommand['sections'] {\n  const sections: MarkdownCommand['sections'] = {};\n\n  // Extract title (first h1)\n  const titleMatch = body.match(/^#\\s+(.+)$/m);\n  if (titleMatch?.[1]) {\n    sections.title = titleMatch[1].trim();\n  }\n\n  // Extract instructions section\n  const instructionsMatch = body.match(/##\\s*Instructions?\\s*\\n([\\s\\S]*?)(?=\\n##|$)/i);\n  if (instructionsMatch?.[1]) {\n    sections.instructions = instructionsMatch[1].trim();\n  }\n\n  // Extract fallbacks section\n  const fallbacksMatch = body.match(/##\\s*Fallbacks?\\s*\\n([\\s\\S]*?)(?=\\n##|$)/i);\n  if (fallbacksMatch?.[1]) {\n    sections.fallbacks = fallbacksMatch[1].trim();\n  }\n\n  // Extract output format section\n  const outputMatch = body.match(/##\\s*Output\\s*(Format)?\\s*\\n([\\s\\S]*?)(?=\\n##|$)/i);\n  if (outputMatch?.[2]) {\n    sections.outputFormat = outputMatch[2].trim();\n  }\n\n  return sections;\n}\n\n/**\n * Map integration name to adapter type\n */\nfunction mapIntegrationToAdapterType(integration: string): AdapterType | null {\n  const mapping: Record<string, AdapterType> = {\n    // Issue tracker mappings\n    jira: 'issue_tracker',\n    issue_tracker: 'issue_tracker',\n    issues: 'issue_tracker',\n    linear: 'issue_tracker',\n    github_issues: 'issue_tracker',\n\n    // Git provider mappings\n    git: 'git',\n    github: 'git',\n    gitlab: 'git',\n    bitbucket: 'git',\n\n    // Documentation mappings\n    docs: 'documentation',\n    documentation: 'documentation',\n    confluence: 'documentation',\n    notion: 'documentation',\n    wiki: 'documentation',\n\n    // State mappings\n    state: 'state',\n    filesystem: 'state',\n  };\n\n  return mapping[integration.toLowerCase()] ?? null;\n}\n\n/**\n * Parse integration dependencies from frontmatter\n */\nfunction parseDependencies(frontmatter: CommandFrontmatter): IntegrationDependency[] {\n  const dependencies: IntegrationDependency[] = [];\n\n  // Required dependencies\n  if (frontmatter.requires && Array.isArray(frontmatter.requires)) {\n    for (const req of frontmatter.requires) {\n      const type = mapIntegrationToAdapterType(req);\n      if (type) {\n        dependencies.push({\n          type,\n          required: true,\n          description: `Requires ${req} integration`,\n        });\n      }\n    }\n  }\n\n  // Optional dependencies\n  if (frontmatter.optional && Array.isArray(frontmatter.optional)) {\n    for (const opt of frontmatter.optional) {\n      const type = mapIntegrationToAdapterType(opt);\n      if (type) {\n        dependencies.push({\n          type,\n          required: false,\n          description: `Optionally uses ${opt} integration`,\n        });\n      }\n    }\n  }\n\n  return dependencies;\n}\n\n/**\n * Derive command name from file path\n */\nfunction deriveCommandName(filePath: string, baseDir: string): string {\n  const relativePath = relative(baseDir, filePath);\n  const name = basename(filePath, '.md');\n\n  // Include parent directory for nested commands (e.g., core/check-inbox -> check-inbox)\n  // But not for simple structure\n  const dir = dirname(relativePath);\n  if (dir === '.' || dir === 'core' || dir === 'optional') {\n    return name;\n  }\n\n  // For deeper nesting, include the subdirectory\n  return name;\n}\n\n/**\n * Derive category from file path\n */\nfunction deriveCategoryFromPath(filePath: string, baseDir: string): CommandCategory {\n  const relativePath = relative(baseDir, filePath);\n  const parts = relativePath.split('/');\n\n  if (parts.includes('optional')) {\n    return 'optional';\n  }\n  if (parts.includes('core')) {\n    return 'core';\n  }\n\n  // Default to custom for project-specific commands\n  return 'custom';\n}\n\n/**\n * Load a single command from a markdown file\n */\nexport async function loadCommandFromFile(\n  filePath: string,\n  baseDir: string,\n  categoryOverride?: CommandCategory\n): Promise<MarkdownCommand> {\n  const content = await fs.readFile(filePath, 'utf-8');\n  const { frontmatter, body } = parseFrontmatter(content);\n  const sections = parseSections(body);\n\n  const name = deriveCommandName(filePath, baseDir);\n  const category = categoryOverride ?? deriveCategoryFromPath(filePath, baseDir);\n  const dependencies = parseDependencies(frontmatter);\n\n  const metadata: CommandMetadata = {\n    name,\n    description: frontmatter.description ?? sections.title ?? name,\n    category,\n    dependencies,\n    sourcePath: filePath,\n    available: true, // Will be updated by registry\n  };\n  if (frontmatter['argument-hint']) {\n    metadata.argumentHint = frontmatter['argument-hint'];\n  }\n\n  return {\n    metadata,\n    content: body,\n    sections,\n  };\n}\n\n/**\n * Find all markdown files in a directory\n */\nasync function findMarkdownFiles(dir: string, recursive: boolean): Promise<string[]> {\n  const files: string[] = [];\n\n  try {\n    const entries = await fs.readdir(dir, { withFileTypes: true });\n\n    for (const entry of entries) {\n      const fullPath = join(dir, entry.name);\n\n      if (entry.isDirectory() && recursive) {\n        const subFiles = await findMarkdownFiles(fullPath, recursive);\n        files.push(...subFiles);\n      } else if (entry.isFile() && entry.name.endsWith('.md')) {\n        files.push(fullPath);\n      }\n    }\n  } catch (error) {\n    // Directory doesn't exist or can't be read\n    if ((error as NodeJS.ErrnoException).code !== 'ENOENT') {\n      throw error;\n    }\n  }\n\n  return files;\n}\n\n/**\n * Load commands from a directory\n */\nexport async function loadCommandsFromDirectory(\n  options: CommandLoaderOptions\n): Promise<CommandLoadResult> {\n  const result: CommandLoadResult = {\n    loaded: [],\n    errors: [],\n  };\n\n  const files = await findMarkdownFiles(options.directory, options.recursive ?? true);\n\n  for (const filePath of files) {\n    try {\n      const command = await loadCommandFromFile(filePath, options.directory, options.category);\n\n      // Apply filter if provided\n      if (options.filter && !options.filter(command.metadata)) {\n        continue;\n      }\n\n      result.loaded.push(command);\n    } catch (error) {\n      result.errors.push({\n        path: filePath,\n        error: error instanceof Error ? error.message : String(error),\n      });\n    }\n  }\n\n  return result;\n}\n\n/**\n * Load commands from the default CoreAI commands directory\n */\nexport async function loadCoreAICommands(projectRoot: string): Promise<CommandLoadResult> {\n  const commandsDir = join(projectRoot, 'coreai', 'commands');\n  return loadCommandsFromDirectory({\n    directory: commandsDir,\n    category: 'core', // Will be overridden by path derivation\n    recursive: true,\n  });\n}\n\n/**\n * Load commands from both core and custom directories\n */\nexport async function loadAllCommands(\n  coreCommandsDir: string,\n  customCommandsDir?: string\n): Promise<CommandLoadResult> {\n  const result: CommandLoadResult = {\n    loaded: [],\n    errors: [],\n  };\n\n  // Load core commands\n  const coreResult = await loadCommandsFromDirectory({\n    directory: coreCommandsDir,\n    category: 'core',\n    recursive: true,\n  });\n  result.loaded.push(...coreResult.loaded);\n  result.errors.push(...coreResult.errors);\n\n  // Load custom commands if directory specified\n  if (customCommandsDir) {\n    const customResult = await loadCommandsFromDirectory({\n      directory: customCommandsDir,\n      category: 'custom',\n      recursive: true,\n    });\n    result.loaded.push(...customResult.loaded);\n    result.errors.push(...customResult.errors);\n  }\n\n  return result;\n}\n","/**\n * Command Runner\n *\n * Executes commands with graceful degradation support.\n */\n\nimport type {\n  CommandDefinition,\n  CommandResult,\n  CommandContext,\n  BaseCommandOptions,\n  IntegrationDependency,\n} from './types.js';\nimport type { CommandRegistry } from './registry.js';\nimport { createCommandContext, cleanupContext, type CreateContextOptions } from './context.js';\n\n/**\n * Options for running a command\n */\nexport interface RunCommandOptions extends BaseCommandOptions {\n  /**\n   * Pre-created command context\n   */\n  context?: CommandContext;\n\n  /**\n   * Whether to clean up context after execution\n   */\n  cleanupAfter?: boolean;\n}\n\n/**\n * Run a registered command\n */\nexport async function runCommand<TResult = unknown>(\n  registry: CommandRegistry,\n  name: string,\n  args: string[],\n  options: RunCommandOptions = {}\n): Promise<CommandResult<TResult>> {\n  const entry = registry.get(name);\n\n  if (!entry) {\n    return {\n      success: false,\n      error: `Command not found: ${name}`,\n    };\n  }\n\n  if (!entry.metadata.available) {\n    return {\n      success: false,\n      error: entry.metadata.unavailableReason ?? 'Command is unavailable',\n    };\n  }\n\n  if (!entry.definition) {\n    return {\n      success: false,\n      error: `Command ${name} is a markdown command and cannot be executed programmatically`,\n    };\n  }\n\n  // Create or use provided context\n  const contextOptions: CreateContextOptions = {};\n  if (options.projectRoot) {\n    contextOptions.projectRoot = options.projectRoot;\n  }\n  const context = options.context ?? createCommandContext(contextOptions);\n\n  try {\n    const result = (await entry.definition.handler(\n      args,\n      options,\n      context\n    )) as CommandResult<TResult>;\n\n    // Add skipped steps for optional integrations that aren't available\n    if (entry.metadata.dependencies) {\n      // Find optional deps that can't be accessed in the current context\n      const optionalDeps = entry.metadata.dependencies.filter((d) => !d.required);\n      const optionalUnavailable = optionalDeps.filter((d) => !context.hasIntegration(d.type));\n\n      if (optionalUnavailable.length > 0) {\n        result.skippedSteps = result.skippedSteps ?? [];\n        for (const dep of optionalUnavailable) {\n          result.skippedSteps.push({\n            step: `${dep.type} integration`,\n            reason: dep.description ?? `${dep.type} not configured`,\n          });\n        }\n      }\n    }\n\n    return result;\n  } catch (error) {\n    return {\n      success: false,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  } finally {\n    if (options.cleanupAfter !== false && !options.context) {\n      await cleanupContext(context);\n    }\n  }\n}\n\n/**\n * Execute a step with graceful degradation\n *\n * If the required integration is not available, returns a skip result instead of failing.\n */\nexport async function executeWithDegradation<T>(\n  context: CommandContext,\n  dependency: IntegrationDependency,\n  step: () => Promise<T>,\n  fallback?: () => Promise<T>\n): Promise<{ result: T | null; skipped: boolean; reason?: string }> {\n  if (!context.hasIntegration(dependency.type)) {\n    if (dependency.required) {\n      throw new Error(`Required integration missing: ${dependency.type}`);\n    }\n\n    // Optional integration missing, try fallback or skip\n    if (fallback) {\n      try {\n        const result = await fallback();\n        return { result, skipped: false };\n      } catch {\n        return {\n          result: null,\n          skipped: true,\n          reason: dependency.description ?? `${dependency.type} not available`,\n        };\n      }\n    }\n\n    return {\n      result: null,\n      skipped: true,\n      reason: dependency.description ?? `${dependency.type} not available`,\n    };\n  }\n\n  // Integration available, execute step\n  const result = await step();\n  return { result, skipped: false };\n}\n\n/**\n * Create a command handler with automatic degradation tracking\n */\nexport function createDegradingHandler<TOptions extends BaseCommandOptions, TResult>(\n  handler: (\n    args: string[],\n    options: TOptions,\n    context: CommandContext,\n    track: StepTracker\n  ) => Promise<TResult>\n): CommandDefinition<TOptions, TResult>['handler'] {\n  return async (args, options, context) => {\n    const tracker = new StepTracker();\n\n    try {\n      const data = await handler(args, options, context, tracker);\n      return {\n        success: true,\n        data,\n        warnings: tracker.warnings,\n        skippedSteps: tracker.skippedSteps,\n      };\n    } catch (error) {\n      return {\n        success: false,\n        error: error instanceof Error ? error.message : String(error),\n        warnings: tracker.warnings,\n        skippedSteps: tracker.skippedSteps,\n      };\n    }\n  };\n}\n\n/**\n * Tracks skipped steps and warnings during command execution\n */\nexport class StepTracker {\n  readonly skippedSteps: { step: string; reason: string }[] = [];\n  readonly warnings: string[] = [];\n\n  /**\n   * Record a skipped step\n   */\n  skip(step: string, reason: string): void {\n    this.skippedSteps.push({ step, reason });\n  }\n\n  /**\n   * Record a warning\n   */\n  warn(message: string): void {\n    this.warnings.push(message);\n  }\n\n  /**\n   * Execute a step with optional fallback\n   */\n  async tryStep<T>(\n    stepName: string,\n    context: CommandContext,\n    dependency: IntegrationDependency,\n    step: () => Promise<T>,\n    fallback?: () => Promise<T>\n  ): Promise<T | null> {\n    const result = await executeWithDegradation(context, dependency, step, fallback);\n\n    if (result.skipped) {\n      this.skip(stepName, result.reason ?? 'Integration not available');\n    }\n\n    return result.result;\n  }\n}\n","/**\n * Skill Generator\n *\n * Discovers skill source files from skills/ directory and compiles them\n * to .claude/skills/<name>/SKILL.md format for Claude Code.\n *\n * Source: skills/<category>/<name>/SKILL.md (grouped by category)\n * Output: .claude/skills/<name>/SKILL.md (flat, one level deep)\n */\n\nimport { existsSync, mkdirSync, writeFileSync, readFileSync, readdirSync, statSync } from 'fs';\nimport { join, dirname } from 'path';\nimport type { ResolvedCoreAIConfig } from '../config/types.js';\nimport type {\n  SkillTemplate,\n  SkillVariables,\n  GenerateSkillsOptions,\n  GenerateSkillsResult,\n  GeneratedSkill,\n  SkillDependency,\n  SkillCategory,\n} from './types.js';\n\n/**\n * Get the default core skills directory (bundled with CoreAI package)\n */\nexport function getCoreSkillsDir(): string {\n  let currentDir = dirname(import.meta.url.replace('file://', ''));\n  for (let i = 0; i < 5; i++) {\n    if (existsSync(join(currentDir, 'package.json'))) {\n      return join(currentDir, 'skills');\n    }\n    currentDir = dirname(currentDir);\n  }\n  return join(dirname(dirname(dirname(import.meta.url.replace('file://', '')))), 'skills');\n}\n\n/**\n * Discover skill source files from a skills directory.\n *\n * Scans skills/<category>/<name>/SKILL.md structure.\n * Each category directory (core, git, etc.) contains skill directories.\n */\nexport function discoverSkills(skillsDir: string): SkillTemplate[] {\n  const templates: SkillTemplate[] = [];\n\n  if (!existsSync(skillsDir)) {\n    return templates;\n  }\n\n  // Scan category directories (core/, git/, etc.)\n  const categories = readdirSync(skillsDir);\n\n  for (const category of categories) {\n    const categoryPath = join(skillsDir, category);\n    const stat = statSync(categoryPath);\n    if (!stat.isDirectory()) continue;\n\n    // Skip hidden/underscore directories\n    if (category.startsWith('.') || category.startsWith('_')) continue;\n\n    // Scan skill directories within this category\n    const skillDirs = readdirSync(categoryPath);\n\n    for (const skillName of skillDirs) {\n      const skillDir = join(categoryPath, skillName);\n      const skillStat = statSync(skillDir);\n      if (!skillStat.isDirectory()) continue;\n\n      const skillFile = join(skillDir, 'SKILL.md');\n      if (!existsSync(skillFile)) continue;\n\n      try {\n        const content = readFileSync(skillFile, 'utf-8');\n        const template = parseSkillFile(skillName, category as SkillCategory, content);\n        templates.push(template);\n      } catch {\n        // Skip invalid skill files\n      }\n    }\n  }\n\n  return templates;\n}\n\n/**\n * Parse a SKILL.md file into a SkillTemplate\n */\nexport function parseSkillFile(\n  name: string,\n  category: SkillCategory,\n  content: string\n): SkillTemplate {\n  const template: SkillTemplate = {\n    name,\n    description: name,\n    category,\n    content,\n  };\n\n  // Parse frontmatter\n  const frontmatterMatch = content.match(/^---\\r?\\n([\\s\\S]*?)\\r?\\n---\\r?\\n/);\n  if (!frontmatterMatch) {\n    return template;\n  }\n\n  const frontmatter = frontmatterMatch[1]!;\n  const lines = frontmatter.split(/\\r?\\n/);\n  const dependencies: SkillDependency[] = [];\n\n  for (const line of lines) {\n    const colonIndex = line.indexOf(':');\n    if (colonIndex === -1) continue;\n\n    const key = line.slice(0, colonIndex).trim();\n    let value = line.slice(colonIndex + 1).trim();\n\n    // Remove quotes\n    if (\n      (value.startsWith('\"') && value.endsWith('\"')) ||\n      (value.startsWith(\"'\") && value.endsWith(\"'\"))\n    ) {\n      value = value.slice(1, -1);\n    }\n\n    switch (key) {\n      case 'name':\n        template.name = value;\n        break;\n      case 'description':\n        template.description = value;\n        break;\n      case 'argument-hint':\n        template.argumentHint = value;\n        break;\n      case 'requires':\n        if (value.startsWith('[') && value.endsWith(']')) {\n          const items = value\n            .slice(1, -1)\n            .split(',')\n            .map((s) => s.trim().replace(/['\"]/g, ''));\n          for (const item of items) {\n            if (item) {\n              dependencies.push({\n                type: mapIntegrationName(item),\n                required: true,\n              });\n            }\n          }\n        }\n        break;\n      case 'optional':\n        if (value.startsWith('[') && value.endsWith(']')) {\n          const items = value\n            .slice(1, -1)\n            .split(',')\n            .map((s) => s.trim().replace(/['\"]/g, ''));\n          for (const item of items) {\n            if (item) {\n              dependencies.push({\n                type: mapIntegrationName(item),\n                required: false,\n              });\n            }\n          }\n        }\n        break;\n    }\n  }\n\n  if (dependencies.length > 0) {\n    template.dependencies = dependencies;\n  }\n\n  return template;\n}\n\n/**\n * Map integration name to adapter type\n */\nfunction mapIntegrationName(name: string): 'issue_tracker' | 'git' | 'documentation' | 'state' {\n  const lower = name.toLowerCase();\n\n  if (['jira', 'linear', 'issue_tracker', 'issues', 'github-issues'].includes(lower)) {\n    return 'issue_tracker';\n  }\n  if (['git', 'github', 'gitlab', 'bitbucket'].includes(lower)) {\n    return 'git';\n  }\n  if (['docs', 'documentation', 'confluence', 'notion', 'wiki'].includes(lower)) {\n    return 'documentation';\n  }\n\n  return 'state';\n}\n\n/**\n * Extract variables from config for template substitution\n */\nexport function extractVariables(config?: ResolvedCoreAIConfig | null): SkillVariables {\n  const vars: SkillVariables = {};\n\n  if (!config) {\n    return vars;\n  }\n\n  // Project variables\n  vars.PROJECT_NAME = config.project.name;\n  vars.PROJECT_ROOT = config.project.root;\n  // Issue tracker variables\n  if (config.integrations?.issue_tracker) {\n    const tracker = config.integrations.issue_tracker;\n    if (tracker.config?.project_key) {\n      vars.JIRA_PROJECT = tracker.config.project_key;\n    }\n    if (tracker.config?.base_url) {\n      vars.JIRA_URL = tracker.config.base_url;\n    }\n  }\n\n  // Git variables\n  if (config.integrations?.git) {\n    const git = config.integrations.git;\n    if (git.config?.repo) {\n      vars.GITHUB_REPO = git.config.repo;\n    }\n    if (git.config?.owner) {\n      vars.GITHUB_OWNER = git.config.owner;\n    }\n    if (git.config?.default_branch) {\n      vars.DEFAULT_BRANCH = git.config.default_branch;\n    }\n  }\n\n  // Documentation variables\n  if (config.integrations?.documentation) {\n    const docs = config.integrations.documentation;\n    if (docs.config?.space_key) {\n      vars.CONFLUENCE_SPACE = docs.config.space_key;\n    }\n    if (docs.config?.base_url) {\n      vars.CONFLUENCE_URL = docs.config.base_url;\n    }\n    if (docs.config?.base_path) {\n      vars.DOCS_PATH = docs.config.base_path;\n    }\n  }\n\n  // Quality gate commands\n  if (config.quality_gates) {\n    const gates = config.quality_gates;\n    // Map common gate names to variables\n    const gateMappings: Record<string, keyof SkillVariables> = {\n      lint: 'LINT_CMD',\n      test: 'TEST_CMD',\n      build: 'BUILD_CMD',\n      static_analysis: 'STATIC_ANALYSIS_CMD',\n      staticAnalysis: 'STATIC_ANALYSIS_CMD',\n    };\n\n    for (const [gateName, gate] of Object.entries(gates)) {\n      const varName = gateMappings[gateName];\n      if (varName) {\n        vars[varName] = gate.command;\n      }\n    }\n  }\n\n  return vars;\n}\n\n/**\n * Substitute variables in template content\n */\nexport function substituteVariables(content: string, variables: SkillVariables): string {\n  let result = content;\n\n  for (const [key, value] of Object.entries(variables)) {\n    if (value !== undefined) {\n      // Replace {{VARIABLE}} pattern\n      const pattern = new RegExp(`\\\\{\\\\{${key}\\\\}\\\\}`, 'g');\n      result = result.replace(pattern, value);\n    }\n  }\n\n  return result;\n}\n\n/**\n * Check if a skill's dependencies are satisfied\n */\nexport function checkDependencies(\n  skill: SkillTemplate,\n  config?: ResolvedCoreAIConfig | null\n): { satisfied: boolean; missing: SkillDependency[] } {\n  if (!skill.dependencies || skill.dependencies.length === 0) {\n    return { satisfied: true, missing: [] };\n  }\n\n  const missing: SkillDependency[] = [];\n\n  for (const dep of skill.dependencies) {\n    if (!dep.required) {\n      // Optional dependencies don't block skill generation\n      continue;\n    }\n\n    // Check if the integration is configured\n    let hasIntegration = false;\n\n    if (config?.integrations) {\n      switch (dep.type) {\n        case 'issue_tracker':\n          hasIntegration = !!config.integrations.issue_tracker;\n          break;\n        case 'git':\n          hasIntegration = !!config.integrations.git;\n          break;\n        case 'documentation':\n          hasIntegration = !!config.integrations.documentation;\n          break;\n        case 'state':\n          hasIntegration = !!config.integrations.state;\n          break;\n      }\n    }\n\n    if (!hasIntegration) {\n      missing.push(dep);\n    }\n  }\n\n  return {\n    satisfied: missing.length === 0,\n    missing,\n  };\n}\n\n/**\n * Generate skills from source files to Claude Code output format.\n *\n * Discovers skills from skills/<category>/<name>/SKILL.md and writes\n * compiled output to .claude/skills/<name>/SKILL.md (flattened).\n */\nexport function generateSkills(\n  config: ResolvedCoreAIConfig | undefined,\n  options: GenerateSkillsOptions = {}\n): GenerateSkillsResult {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const coreSkillsDir = options.coreSkillsDir ?? getCoreSkillsDir();\n  const outputDir = options.outputDir ?? join(projectRoot, '.claude', 'skills');\n  const includeCoreSkills = options.includeCoreSkills ?? true;\n  const overwrite = options.overwrite ?? true;\n\n  const result: GenerateSkillsResult = {\n    generated: [],\n    errors: [],\n    variables: {},\n  };\n\n  // Extract variables from config\n  const variables = extractVariables(config);\n\n  // Merge custom variables\n  if (options.variables) {\n    Object.assign(variables, options.variables);\n  }\n\n  result.variables = variables;\n\n  // Discover skill templates from source directory\n  let templates: SkillTemplate[] = [];\n\n  if (includeCoreSkills) {\n    const discovered = discoverSkills(coreSkillsDir);\n    templates.push(...discovered);\n  }\n\n  // Add custom templates if provided\n  if (options.customTemplatesDir && existsSync(options.customTemplatesDir)) {\n    const custom = discoverSkills(options.customTemplatesDir);\n    templates.push(...custom);\n  }\n\n  // Filter to specific skills if requested\n  if (options.skills && options.skills.length > 0) {\n    const skillsToInclude = options.skills;\n    templates = templates.filter((t) => skillsToInclude.includes(t.name));\n  }\n\n  // Generate each skill\n  for (const template of templates) {\n    try {\n      const generated = generateSkill(template, variables, config, outputDir, overwrite);\n      result.generated.push(generated);\n    } catch (error) {\n      result.errors.push({\n        name: template.name,\n        error: error instanceof Error ? error.message : String(error),\n      });\n    }\n  }\n\n  return result;\n}\n\n/**\n * Generate a single skill to .claude/skills/<name>/SKILL.md\n */\nfunction generateSkill(\n  template: SkillTemplate,\n  variables: SkillVariables,\n  config: ResolvedCoreAIConfig | undefined,\n  outputDir: string,\n  overwrite: boolean\n): GeneratedSkill {\n  // Output is directory-per-skill: .claude/skills/<name>/SKILL.md\n  const skillDir = join(outputDir, template.name);\n  const outputPath = join(skillDir, 'SKILL.md');\n\n  // Check if file exists and we shouldn't overwrite\n  if (existsSync(outputPath) && !overwrite) {\n    return {\n      name: template.name,\n      category: template.category,\n      outputPath,\n      action: 'skipped',\n      skipReason: 'File already exists',\n    };\n  }\n\n  // Check dependencies\n  const { satisfied, missing } = checkDependencies(template, config);\n\n  if (!satisfied) {\n    const missingTypes = missing.map((d) => d.type).join(', ');\n    return {\n      name: template.name,\n      category: template.category,\n      outputPath,\n      action: 'skipped',\n      skipReason: `Missing required integrations: ${missingTypes}`,\n    };\n  }\n\n  // Substitute variables in content\n  const content = substituteVariables(template.content, variables);\n\n  // Check if content changed (for update vs create)\n  const isUpdate = existsSync(outputPath);\n\n  // Ensure skill directory exists\n  if (!existsSync(skillDir)) {\n    mkdirSync(skillDir, { recursive: true });\n  }\n\n  // Write the skill file\n  writeFileSync(outputPath, content, 'utf-8');\n\n  return {\n    name: template.name,\n    category: template.category,\n    outputPath,\n    action: isUpdate ? 'updated' : 'created',\n  };\n}\n\n/**\n * Format skill generation result for display\n */\nexport function formatGenerateResult(result: GenerateSkillsResult): string {\n  const lines: string[] = [];\n\n  const created = result.generated.filter((g) => g.action === 'created');\n  const updated = result.generated.filter((g) => g.action === 'updated');\n  const skipped = result.generated.filter((g) => g.action === 'skipped');\n\n  if (created.length > 0) {\n    lines.push(`Created ${created.length} skill(s):`);\n    for (const skill of created) {\n      lines.push(`  \\u2713 ${skill.name}`);\n    }\n    lines.push('');\n  }\n\n  if (updated.length > 0) {\n    lines.push(`Updated ${updated.length} skill(s):`);\n    for (const skill of updated) {\n      lines.push(`  \\u2713 ${skill.name}`);\n    }\n    lines.push('');\n  }\n\n  if (skipped.length > 0) {\n    lines.push(`Skipped ${skipped.length} skill(s):`);\n    for (const skill of skipped) {\n      lines.push(`  - ${skill.name}: ${skill.skipReason}`);\n    }\n    lines.push('');\n  }\n\n  if (result.errors.length > 0) {\n    lines.push(`Failed to generate ${result.errors.length} skill(s):`);\n    for (const error of result.errors) {\n      lines.push(`  \\u2717 ${error.name}: ${error.error}`);\n    }\n    lines.push('');\n  }\n\n  const total = created.length + updated.length;\n  if (total > 0) {\n    lines.push(`Generated ${total} skill(s) to .claude/skills/`);\n  } else if (result.generated.length === 0 && result.errors.length === 0) {\n    lines.push('No skills to generate.');\n  }\n\n  return lines.join('\\n');\n}\n","/**\n * KnowledgeLibrary Manager\n *\n * Manages the KnowledgeLibrary directory structure and agent state.\n */\n\nimport {\n  existsSync,\n  mkdirSync,\n  writeFileSync,\n  readFileSync,\n  readdirSync,\n  renameSync,\n  statSync,\n} from 'fs';\nimport { join, basename } from 'path';\nimport type {\n  AgentDirectories,\n  AgentKnowledgeState,\n  InitKnowledgeLibraryOptions,\n  InitKnowledgeLibraryResult,\n  KnowledgeLibraryState,\n  Message,\n  MessageMetadata,\n  ReadMessagesOptions,\n  WriteMessageOptions,\n  AgentContext,\n} from './types.js';\n\n/**\n * Default KnowledgeLibrary base path\n */\nexport const DEFAULT_KNOWLEDGE_LIBRARY_PATH = 'KnowledgeLibrary';\n\n/**\n * Standard files in a KnowledgeLibrary\n */\nexport const STANDARD_FILES = {\n  context: 'context.txt',\n  architecture: 'architecture.txt',\n  prd: 'prd.txt',\n} as const;\n\n/**\n * Standard directories for each agent\n */\nexport const AGENT_DIRECTORIES = [\n  'inbox',\n  'inbox/processed',\n  'outbox',\n  'context',\n  'control',\n  'history',\n  'tech',\n] as const;\n\n/**\n * Standard files in an agent's control directory\n */\nexport const CONTROL_FILES = {\n  objectives: 'objectives.txt',\n  decisions: 'decisions.txt',\n  dependencies: 'dependencies.txt',\n} as const;\n\n/**\n * Get the path to an agent's directories\n */\nexport function getAgentDirectories(basePath: string, agentName: string): AgentDirectories {\n  const root = join(basePath, agentName);\n  return {\n    root,\n    inbox: join(root, 'inbox'),\n    inboxProcessed: join(root, 'inbox', 'processed'),\n    outbox: join(root, 'outbox'),\n    context: join(root, 'context'),\n    control: join(root, 'control'),\n    history: join(root, 'history'),\n    tech: join(root, 'tech'),\n  };\n}\n\n/**\n * Initialize the KnowledgeLibrary base structure\n */\nexport function initKnowledgeLibrary(\n  options: InitKnowledgeLibraryOptions = {}\n): InitKnowledgeLibraryResult {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const createDefaults = options.createDefaults ?? true;\n\n  const createdDirs: string[] = [];\n  const createdFiles: string[] = [];\n\n  try {\n    // Create base directory\n    if (!existsSync(basePath)) {\n      mkdirSync(basePath, { recursive: true });\n      createdDirs.push(basePath);\n    }\n\n    // Create default global files if requested\n    if (createDefaults) {\n      // context.txt\n      const contextPath = join(basePath, STANDARD_FILES.context);\n      if (!existsSync(contextPath)) {\n        writeFileSync(\n          contextPath,\n          `# Project Context\n\n## Current Sprint\n- Sprint: [Sprint name/number]\n- Goals: [Sprint goals]\n- Deadline: [Sprint deadline]\n\n## Priorities\n1. [Priority 1]\n2. [Priority 2]\n3. [Priority 3]\n\n## Notes\n[Project-wide notes and context]\n`,\n          'utf-8'\n        );\n        createdFiles.push(contextPath);\n      }\n\n      // architecture.txt\n      const architecturePath = join(basePath, STANDARD_FILES.architecture);\n      if (!existsSync(architecturePath)) {\n        writeFileSync(\n          architecturePath,\n          `# Architecture Notes\n\n## Technical Decisions\n[Record major technical decisions here]\n\n## System Overview\n[High-level system architecture]\n\n## Key Components\n[Important system components]\n`,\n          'utf-8'\n        );\n        createdFiles.push(architecturePath);\n      }\n\n      // prd.txt\n      const prdPath = join(basePath, STANDARD_FILES.prd);\n      if (!existsSync(prdPath)) {\n        writeFileSync(\n          prdPath,\n          `# Product Requirements Document\n\n## Overview\n[Product overview]\n\n## Goals\n[Product goals]\n\n## Features\n[Feature list]\n\n## Requirements\n[Detailed requirements]\n`,\n          'utf-8'\n        );\n        createdFiles.push(prdPath);\n      }\n    }\n\n    return {\n      success: true,\n      createdDirs,\n      createdFiles,\n    };\n  } catch (error) {\n    return {\n      success: false,\n      createdDirs,\n      createdFiles,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  }\n}\n\n/**\n * Initialize an agent's KnowledgeLibrary directories\n */\nexport function initAgentKnowledgeLibrary(\n  agentName: string,\n  options: InitKnowledgeLibraryOptions = {}\n): InitKnowledgeLibraryResult {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const createDefaults = options.createDefaults ?? true;\n\n  const createdDirs: string[] = [];\n  const createdFiles: string[] = [];\n\n  try {\n    // Ensure base KnowledgeLibrary exists\n    if (!existsSync(basePath)) {\n      const baseResult = initKnowledgeLibrary(options);\n      if (!baseResult.success) {\n        return baseResult;\n      }\n      createdDirs.push(...baseResult.createdDirs);\n      createdFiles.push(...baseResult.createdFiles);\n    }\n\n    // Get agent directories\n    const dirs = getAgentDirectories(basePath, agentName);\n\n    // Create all agent directories\n    for (const dir of AGENT_DIRECTORIES) {\n      const dirPath = join(dirs.root, dir);\n      if (!existsSync(dirPath)) {\n        mkdirSync(dirPath, { recursive: true });\n        createdDirs.push(dirPath);\n      }\n    }\n\n    // Create default files if requested\n    if (createDefaults) {\n      // context/current.txt\n      const currentContextPath = join(dirs.context, 'current.txt');\n      if (!existsSync(currentContextPath)) {\n        writeFileSync(\n          currentContextPath,\n          `# ${agentName} Current Context\n\n## Status\n- State: idle\n- Current Task: None\n- Last Updated: ${new Date().toISOString()}\n\n## Notes\n[Agent-specific context notes]\n`,\n          'utf-8'\n        );\n        createdFiles.push(currentContextPath);\n      }\n\n      // control/objectives.txt\n      const objectivesPath = join(dirs.control, CONTROL_FILES.objectives);\n      if (!existsSync(objectivesPath)) {\n        writeFileSync(\n          objectivesPath,\n          `# ${agentName} Objectives\n\n## Current Objectives\n[None]\n\n## Success Criteria\n[Define success criteria for objectives]\n`,\n          'utf-8'\n        );\n        createdFiles.push(objectivesPath);\n      }\n\n      // control/decisions.txt\n      const decisionsPath = join(dirs.control, CONTROL_FILES.decisions);\n      if (!existsSync(decisionsPath)) {\n        writeFileSync(\n          decisionsPath,\n          `# ${agentName} Decision Log\n\n## Decisions\n[Record important decisions here]\n\nFormat:\n- Date: YYYY-MM-DD\n- Decision: [What was decided]\n- Reasoning: [Why]\n- Related: [Ticket or task reference]\n`,\n          'utf-8'\n        );\n        createdFiles.push(decisionsPath);\n      }\n\n      // control/dependencies.txt\n      const dependenciesPath = join(dirs.control, CONTROL_FILES.dependencies);\n      if (!existsSync(dependenciesPath)) {\n        writeFileSync(\n          dependenciesPath,\n          `# ${agentName} Dependencies\n\n## Blocked By\n[Tasks/agents blocking this agent]\n\n## Blocking\n[Tasks/agents this agent is blocking]\n\nLast Updated: ${new Date().toISOString()}\n`,\n          'utf-8'\n        );\n        createdFiles.push(dependenciesPath);\n      }\n    }\n\n    return {\n      success: true,\n      createdDirs,\n      createdFiles,\n    };\n  } catch (error) {\n    return {\n      success: false,\n      createdDirs,\n      createdFiles,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  }\n}\n\n/**\n * Check if a KnowledgeLibrary exists for an agent\n */\nexport function agentKnowledgeLibraryExists(\n  agentName: string,\n  options: { projectRoot?: string; basePath?: string } = {}\n): boolean {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const agentRoot = join(basePath, agentName);\n\n  return existsSync(agentRoot) && existsSync(join(agentRoot, 'inbox'));\n}\n\n/**\n * Get the KnowledgeLibrary state for an agent\n */\nexport function getAgentKnowledgeState(\n  agentName: string,\n  options: { projectRoot?: string; basePath?: string } = {}\n): AgentKnowledgeState {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const dirs = getAgentDirectories(basePath, agentName);\n\n  const initialized = agentKnowledgeLibraryExists(agentName, options);\n\n  // Get pending messages\n  const pendingMessages = initialized ? readInboxMessages(agentName, options) : [];\n\n  // Get context\n  let context: AgentContext | undefined;\n  const currentContextPath = join(dirs.context, 'current.txt');\n  if (existsSync(currentContextPath)) {\n    const content = readFileSync(currentContextPath, 'utf-8');\n    context = parseContextFile(content);\n  }\n\n  const state: AgentKnowledgeState = {\n    agentName,\n    directories: dirs,\n    pendingMessages,\n    initialized,\n  };\n\n  if (context) {\n    state.context = context;\n  }\n\n  return state;\n}\n\n/**\n * Parse a context file into AgentContext\n */\nfunction parseContextFile(content: string): AgentContext {\n  const context: AgentContext = {\n    lastUpdated: new Date(),\n  };\n\n  // Simple parsing - look for key patterns\n  const statusMatch = content.match(/State:\\s*(.+)/i);\n  if (statusMatch && statusMatch[1]) {\n    context.status = statusMatch[1].trim();\n  }\n\n  const taskMatch = content.match(/Current Task:\\s*(.+)/i);\n  if (taskMatch && taskMatch[1] && taskMatch[1].trim() !== 'None') {\n    context.currentTask = taskMatch[1].trim();\n  }\n\n  const ticketMatch = content.match(/Current Ticket:\\s*([A-Z]+-\\d+)/i);\n  if (ticketMatch && ticketMatch[1]) {\n    context.currentTicket = ticketMatch[1];\n  }\n\n  const updatedMatch = content.match(/Last Updated:\\s*(.+)/i);\n  if (updatedMatch) {\n    const dateStr = updatedMatch[1]?.trim();\n    if (dateStr) {\n      const parsed = new Date(dateStr);\n      if (!isNaN(parsed.getTime())) {\n        context.lastUpdated = parsed;\n      }\n    }\n  }\n\n  return context;\n}\n\n/**\n * Generate a message filename\n */\nexport function generateMessageFilename(from: string, subject: string): string {\n  const now = new Date();\n  const timestamp = now.toISOString().replace(/[-:T]/g, '').slice(0, 12); // YYYYMMDDHHMM\n  const sanitizedSubject = subject\n    .toLowerCase()\n    .replace(/[^a-z0-9]+/g, '-')\n    .slice(0, 30);\n  return `${timestamp}-${from}-${sanitizedSubject}.md`;\n}\n\n/**\n * Parse message frontmatter\n */\nfunction parseMessageFrontmatter(content: string): {\n  metadata: Partial<MessageMetadata>;\n  body: string;\n} {\n  const match = content.match(/^---\\r?\\n([\\s\\S]*?)\\r?\\n---\\r?\\n([\\s\\S]*)$/);\n\n  if (!match) {\n    return { metadata: {}, body: content };\n  }\n\n  const frontmatter = match[1] ?? '';\n  const body = match[2] ?? '';\n  const metadata: Partial<MessageMetadata> = {};\n\n  for (const line of frontmatter.split(/\\r?\\n/)) {\n    const colonIndex = line.indexOf(':');\n    if (colonIndex === -1) continue;\n\n    const key = line.slice(0, colonIndex).trim();\n    const value = line.slice(colonIndex + 1).trim();\n\n    switch (key) {\n      case 'type':\n        metadata.type = value as MessageMetadata['type'];\n        break;\n      case 'from':\n        metadata.from = value;\n        break;\n      case 'to':\n        metadata.to = value;\n        break;\n      case 'date':\n        metadata.date = new Date(value);\n        break;\n      case 'ticket':\n        metadata.ticket = value;\n        break;\n      case 'priority':\n        if (value === 'P0' || value === 'P1' || value === 'P2' || value === 'P3') {\n          metadata.priority = value;\n        }\n        break;\n      case 'subject':\n        metadata.subject = value;\n        break;\n    }\n  }\n\n  return { metadata, body };\n}\n\n/**\n * Read inbox messages for an agent\n */\nexport function readInboxMessages(\n  agentName: string,\n  options: { projectRoot?: string; basePath?: string } & ReadMessagesOptions = {}\n): Message[] {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const dirs = getAgentDirectories(basePath, agentName);\n\n  const messages: Message[] = [];\n\n  // Read inbox\n  if (existsSync(dirs.inbox)) {\n    const files = readdirSync(dirs.inbox).filter(\n      (f) => f.endsWith('.md') && statSync(join(dirs.inbox, f)).isFile()\n    );\n\n    for (const file of files) {\n      const filePath = join(dirs.inbox, file);\n      const rawContent = readFileSync(filePath, 'utf-8');\n      const { metadata, body } = parseMessageFrontmatter(rawContent);\n\n      // Apply filters\n      if (options.type && metadata.type !== options.type) continue;\n      if (options.from && metadata.from !== options.from) continue;\n      if (options.priority && metadata.priority !== options.priority) continue;\n\n      messages.push({\n        filename: file,\n        path: filePath,\n        metadata: metadata as MessageMetadata,\n        rawContent,\n        body,\n      });\n    }\n  }\n\n  // Include processed if requested\n  if (options.includeProcessed && existsSync(dirs.inboxProcessed)) {\n    const files = readdirSync(dirs.inboxProcessed).filter(\n      (f) => f.endsWith('.md') && statSync(join(dirs.inboxProcessed, f)).isFile()\n    );\n\n    for (const file of files) {\n      const filePath = join(dirs.inboxProcessed, file);\n      const rawContent = readFileSync(filePath, 'utf-8');\n      const { metadata, body } = parseMessageFrontmatter(rawContent);\n\n      // Apply filters\n      if (options.type && metadata.type !== options.type) continue;\n      if (options.from && metadata.from !== options.from) continue;\n      if (options.priority && metadata.priority !== options.priority) continue;\n\n      messages.push({\n        filename: file,\n        path: filePath,\n        metadata: metadata as MessageMetadata,\n        rawContent,\n        body,\n      });\n    }\n  }\n\n  // Sort by date (newest first)\n  messages.sort((a, b) => {\n    const dateA = a.metadata.date?.getTime() ?? 0;\n    const dateB = b.metadata.date?.getTime() ?? 0;\n    return dateB - dateA;\n  });\n\n  // Apply limit\n  if (options.limit && messages.length > options.limit) {\n    return messages.slice(0, options.limit);\n  }\n\n  return messages;\n}\n\n/**\n * Write a message to an agent's inbox\n */\nexport function writeInboxMessage(\n  options: WriteMessageOptions & { projectRoot?: string; basePath?: string }\n): { success: boolean; path?: string; error?: string } {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const dirs = getAgentDirectories(basePath, options.to);\n\n  try {\n    // Ensure agent inbox exists\n    if (!existsSync(dirs.inbox)) {\n      mkdirSync(dirs.inbox, { recursive: true });\n    }\n\n    // Generate filename\n    const filename = generateMessageFilename(options.from, options.subject);\n    const filePath = join(dirs.inbox, filename);\n\n    // Format message\n    const now = new Date();\n    const content = formatMessage(options, now);\n\n    // Write file\n    writeFileSync(filePath, content, 'utf-8');\n\n    // Also copy to sender's outbox\n    const senderDirs = getAgentDirectories(basePath, options.from);\n    if (existsSync(senderDirs.outbox)) {\n      writeFileSync(join(senderDirs.outbox, filename), content, 'utf-8');\n    }\n\n    return { success: true, path: filePath };\n  } catch (error) {\n    return {\n      success: false,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  }\n}\n\n/**\n * Format a message with frontmatter\n */\nfunction formatMessage(options: WriteMessageOptions, date: Date): string {\n  let frontmatter = `---\ntype: ${options.type}\nfrom: ${options.from}\nto: ${options.to}\ndate: ${date.toISOString().slice(0, 16).replace('T', ' ')}`;\n\n  if (options.ticket) {\n    frontmatter += `\\nticket: ${options.ticket}`;\n  }\n\n  if (options.priority) {\n    frontmatter += `\\npriority: ${options.priority}`;\n  }\n\n  frontmatter += `\\nsubject: ${options.subject}`;\n\n  frontmatter += `\\n---\n\n## ${options.subject}\n\n${options.body}`;\n\n  return frontmatter;\n}\n\n/**\n * Mark a message as processed (move to processed folder)\n */\nexport function markMessageProcessed(\n  agentName: string,\n  messageFilename: string,\n  options: { projectRoot?: string; basePath?: string } = {}\n): { success: boolean; error?: string } {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const dirs = getAgentDirectories(basePath, agentName);\n\n  const sourcePath = join(dirs.inbox, messageFilename);\n  const destPath = join(dirs.inboxProcessed, messageFilename);\n\n  try {\n    if (!existsSync(sourcePath)) {\n      return { success: false, error: `Message not found: ${messageFilename}` };\n    }\n\n    if (!existsSync(dirs.inboxProcessed)) {\n      mkdirSync(dirs.inboxProcessed, { recursive: true });\n    }\n\n    renameSync(sourcePath, destPath);\n    return { success: true };\n  } catch (error) {\n    return {\n      success: false,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  }\n}\n\n/**\n * Get global KnowledgeLibrary state\n */\nexport function getKnowledgeLibraryState(\n  options: { projectRoot?: string; basePath?: string } = {}\n): KnowledgeLibraryState | null {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n\n  if (!existsSync(basePath)) {\n    return null;\n  }\n\n  // Get list of agents\n  const agents: string[] = [];\n  const entries = readdirSync(basePath);\n  for (const entry of entries) {\n    const entryPath = join(basePath, entry);\n    if (statSync(entryPath).isDirectory() && existsSync(join(entryPath, 'inbox'))) {\n      agents.push(entry);\n    }\n  }\n\n  return {\n    basePath,\n    contextPath: join(basePath, STANDARD_FILES.context),\n    architecturePath: join(basePath, STANDARD_FILES.architecture),\n    prdPath: join(basePath, STANDARD_FILES.prd),\n    agents,\n  };\n}\n\n/**\n * Update agent context\n */\nexport function updateAgentContext(\n  agentName: string,\n  context: Partial<AgentContext>,\n  options: { projectRoot?: string; basePath?: string } = {}\n): { success: boolean; error?: string } {\n  const projectRoot = options.projectRoot ?? process.cwd();\n  const basePath = join(projectRoot, options.basePath ?? DEFAULT_KNOWLEDGE_LIBRARY_PATH);\n  const dirs = getAgentDirectories(basePath, agentName);\n  const contextPath = join(dirs.context, 'current.txt');\n\n  try {\n    const now = new Date();\n    const content = `# ${agentName} Current Context\n\n## Status\n- State: ${context.status ?? 'idle'}\n- Current Task: ${context.currentTask ?? 'None'}\n${context.currentTicket ? `- Current Ticket: ${context.currentTicket}` : ''}- Last Updated: ${now.toISOString()}\n\n## Notes\n${context.notes ?? '[Agent-specific context notes]'}\n`;\n\n    if (!existsSync(dirs.context)) {\n      mkdirSync(dirs.context, { recursive: true });\n    }\n\n    writeFileSync(contextPath, content, 'utf-8');\n    return { success: true };\n  } catch (error) {\n    return {\n      success: false,\n      error: error instanceof Error ? error.message : String(error),\n    };\n  }\n}\n\n/**\n * Format KnowledgeLibrary state for display\n */\nexport function formatKnowledgeLibraryState(state: KnowledgeLibraryState | null): string {\n  if (!state) {\n    return 'KnowledgeLibrary not initialized.';\n  }\n\n  const lines: string[] = [];\n  lines.push(`KnowledgeLibrary: ${state.basePath}\\n`);\n\n  lines.push('Global files:');\n  lines.push(`  - ${basename(state.contextPath)}`);\n  lines.push(`  - ${basename(state.architecturePath)}`);\n  lines.push(`  - ${basename(state.prdPath)}`);\n  lines.push('');\n\n  if (state.agents.length > 0) {\n    lines.push(`Agents (${state.agents.length}):`);\n    for (const agent of state.agents) {\n      lines.push(`  - ${agent}`);\n    }\n  } else {\n    lines.push('No agents initialized.');\n  }\n\n  return lines.join('\\n');\n}\n\n/**\n * Format agent knowledge state for display\n */\nexport function formatAgentKnowledgeState(state: AgentKnowledgeState): string {\n  const lines: string[] = [];\n\n  lines.push(`Agent: ${state.agentName}`);\n  lines.push(`Status: ${state.initialized ? 'Initialized' : 'Not initialized'}`);\n  lines.push('');\n\n  if (state.context) {\n    lines.push('Context:');\n    lines.push(`  State: ${state.context.status ?? 'unknown'}`);\n    if (state.context.currentTask) {\n      lines.push(`  Current Task: ${state.context.currentTask}`);\n    }\n    if (state.context.currentTicket) {\n      lines.push(`  Current Ticket: ${state.context.currentTicket}`);\n    }\n    lines.push(`  Last Updated: ${state.context.lastUpdated.toISOString()}`);\n    lines.push('');\n  }\n\n  if (state.pendingMessages.length > 0) {\n    lines.push(`Pending Messages (${state.pendingMessages.length}):`);\n    for (const msg of state.pendingMessages) {\n      const type = msg.metadata.type ?? 'unknown';\n      const from = msg.metadata.from ?? 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