@defai.digital/mcp-server 13.3.0 → 13.4.0

package/dist/bootstrap.d.ts

@@ -7,16 +7,33 @@
  * Following Ports & Adapters (Hexagonal Architecture) pattern.
  */
 import { createProviderRegistry as createRegistry } from '@defai.digital/provider-adapters';
+import { type TraceStore } from '@defai.digital/trace-domain';
+import { type SessionStore, type SessionManager } from '@defai.digital/session-domain';
 import { type StepExecutor } from '@defai.digital/workflow-engine';
 export type ProviderRegistry = ReturnType<typeof createRegistry>;
+export type { TraceStore } from '@defai.digital/trace-domain';
+export type { SessionStore, SessionManager } from '@defai.digital/session-domain';
 interface MCPDependencies {
     providerRegistry: ProviderRegistry;
+    traceStore: TraceStore;
+    sessionStore: SessionStore;
+    sessionManager: SessionManager;
+    usingSqlite: boolean;
 }
 /**
- * Initialize all MCP Server dependencies
+ * Async initialization - call this at server startup to enable SQLite storage
+ *
+ * This initializes SQLite trace storage so traces persist across processes
+ * and can be viewed in the dashboard (ax monitor).
+ */
+export declare function initializeAsync(): Promise<void>;
+/**
+ * Synchronous bootstrap - falls back to in-memory storage
  *
  * Called once at server startup. Wires adapters to ports.
  * This is the composition root - the only place that knows about concrete implementations.
+ *
+ * Prefer calling initializeAsync() first for persistent storage.
  */
 export declare function bootstrap(): MCPDependencies;
 /**
@@ -32,6 +49,18 @@ export declare function isBootstrapped(): boolean;
  * Get provider registry
  */
 export declare function getProviderRegistry(): ProviderRegistry;
+/**
+ * Get trace store for workflow event tracking
+ */
+export declare function getTraceStore(): TraceStore;
+/**
+ * Get session store for collaboration sessions
+ */
+export declare function getSessionStore(): SessionStore;
+/**
+ * Get session manager for session operations
+ */
+export declare function getSessionManager(): SessionManager;
 /**
  * Create a new provider registry instance
  * Use this when you need a fresh registry (e.g., for testing)
@@ -85,5 +114,4 @@ export declare function getStepExecutor(options?: StepExecutorOptions): StepExec
  * Reset the step executor (for testing)
  */
 export declare function resetStepExecutor(): void;
-export {};
 //# sourceMappingURL=bootstrap.d.ts.map

package/dist/bootstrap.d.ts.map

@@ -1 +1 @@
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package/dist/bootstrap.js

@@ -6,25 +6,142 @@
  *
  * Following Ports & Adapters (Hexagonal Architecture) pattern.
  */
+import { existsSync, mkdirSync } from 'node:fs';
+import { homedir } from 'node:os';
+import { join } from 'node:path';
 // ============================================================================
 // Adapter Imports - ONLY allowed in this file
 // ============================================================================
 import { createProviderRegistry as createRegistry } from '@defai.digital/provider-adapters';
+import { DATA_DIR_NAME, DATABASE_FILENAME, ENV_DATA_DIR, ENV_STORAGE_MODE, STORAGE_MODE_MEMORY, } from '@defai.digital/contracts';
+// Trace store imports (for workflow tracing)
+import { createInMemoryTraceStore, } from '@defai.digital/trace-domain';
+// Session store imports (for collaboration sessions)
+import { createSessionStore, createSessionManager, DEFAULT_SESSION_DOMAIN_CONFIG, } from '@defai.digital/session-domain';
 // Step executor imports (for workflow execution)
 import { createRealStepExecutor, } from '@defai.digital/workflow-engine';
 import { createProviderPromptExecutor, } from '@defai.digital/agent-domain';
 import { createProviderBridge, createDiscussionExecutor, } from '@defai.digital/discussion-domain';
 import { TIMEOUT_PROVIDER_DEFAULT, PROVIDER_DEFAULT, } from '@defai.digital/contracts';
+// ============================================================================
+// Database Utilities (shared with CLI via same database file)
+// ============================================================================
+/**
+ * Gets the data directory path (same as CLI)
+ */
+function getDataDirectory() {
+    const customDir = process.env[ENV_DATA_DIR];
+    if (customDir) {
+        return customDir;
+    }
+    return join(homedir(), DATA_DIR_NAME);
+}
+/**
+ * Gets the database file path
+ */
+function getDatabasePath() {
+    return join(getDataDirectory(), DATABASE_FILENAME);
+}
+/**
+ * Ensures the data directory exists
+ */
+function ensureDataDirectory() {
+    const dir = getDataDirectory();
+    if (!existsSync(dir)) {
+        mkdirSync(dir, { recursive: true });
+    }
+}
+/**
+ * Gets the configured storage mode
+ */
+function getStorageMode() {
+    const mode = process.env[ENV_STORAGE_MODE]?.toLowerCase();
+    if (mode === STORAGE_MODE_MEMORY) {
+        return 'memory';
+    }
+    return 'sqlite'; // Default to sqlite
+}
+// Cached database instance
+let _database = null;
+/**
+ * Initialize SQLite trace store
+ * Returns null if SQLite is unavailable
+ */
+async function initializeSqliteTraceStore() {
+    const storageMode = getStorageMode();
+    if (storageMode === 'memory') {
+        return null;
+    }
+    try {
+        // Ensure data directory exists
+        ensureDataDirectory();
+        // Dynamic import of better-sqlite3
+        const BetterSqlite3 = (await import('better-sqlite3')).default;
+        const dbPath = getDatabasePath();
+        _database = new BetterSqlite3(dbPath);
+        // Enable WAL mode for better concurrent access
+        // This allows multiple processes (e.g., ax monitor and ax mcp server) to
+        // access the database simultaneously without "readonly database" errors
+        const db = _database;
+        db.pragma('journal_mode = WAL');
+        // Dynamic import of SQLite adapter
+        const sqliteModule = await import('@defai.digital/sqlite-adapter');
+        const traceStore = sqliteModule.createSqliteTraceStore(_database);
+        return traceStore;
+    }
+    catch (error) {
+        // SQLite not available, will fall back to in-memory
+        const msg = error instanceof Error ? error.message : 'Unknown error';
+        console.warn(`[MCP] SQLite trace store unavailable (${msg}), using in-memory storage`);
+        return null;
+    }
+}
 let _dependencies = null;
 let _initialized = false;
+let _asyncInitialized = false;
 // ============================================================================
-// Bootstrap Function
+// Bootstrap Functions
 // ============================================================================
 /**
- * Initialize all MCP Server dependencies
+ * Async initialization - call this at server startup to enable SQLite storage
+ *
+ * This initializes SQLite trace storage so traces persist across processes
+ * and can be viewed in the dashboard (ax monitor).
+ */
+export async function initializeAsync() {
+    if (_asyncInitialized) {
+        return;
+    }
+    // Create provider registry
+    const providerRegistry = createRegistry();
+    // Try to create SQLite trace store
+    const sqliteTraceStore = await initializeSqliteTraceStore();
+    const traceStore = sqliteTraceStore ?? createInMemoryTraceStore();
+    const usingSqlite = sqliteTraceStore !== null;
+    if (usingSqlite) {
+        console.error('[MCP] Using SQLite trace storage at ' + getDatabasePath());
+    }
+    // Create shared session store and manager
+    const sessionStore = createSessionStore();
+    const sessionManager = createSessionManager(sessionStore, DEFAULT_SESSION_DOMAIN_CONFIG);
+    // Build dependency container
+    _dependencies = {
+        providerRegistry,
+        traceStore,
+        sessionStore,
+        sessionManager,
+        usingSqlite,
+    };
+    _initialized = true;
+    _asyncInitialized = true;
+}
+/**
+ * Synchronous bootstrap - falls back to in-memory storage
  *
  * Called once at server startup. Wires adapters to ports.
  * This is the composition root - the only place that knows about concrete implementations.
+ *
+ * Prefer calling initializeAsync() first for persistent storage.
  */
 export function bootstrap() {
     if (_initialized && _dependencies) {
@@ -32,9 +149,18 @@ export function bootstrap() {
     }
     // Create provider registry
     const providerRegistry = createRegistry();
+    // Create in-memory trace store (no SQLite in sync mode)
+    const traceStore = createInMemoryTraceStore();
+    // Create shared session store and manager
+    const sessionStore = createSessionStore();
+    const sessionManager = createSessionManager(sessionStore, DEFAULT_SESSION_DOMAIN_CONFIG);
     // Build dependency container
     _dependencies = {
         providerRegistry,
+        traceStore,
+        sessionStore,
+        sessionManager,
+        usingSqlite: false,
     };
     _initialized = true;
     return _dependencies;
@@ -61,6 +187,24 @@ export function isBootstrapped() {
 export function getProviderRegistry() {
     return getDependencies().providerRegistry;
 }
+/**
+ * Get trace store for workflow event tracking
+ */
+export function getTraceStore() {
+    return getDependencies().traceStore;
+}
+/**
+ * Get session store for collaboration sessions
+ */
+export function getSessionStore() {
+    return getDependencies().sessionStore;
+}
+/**
+ * Get session manager for session operations
+ */
+export function getSessionManager() {
+    return getDependencies().sessionManager;
+}
 /**
  * Create a new provider registry instance
  * Use this when you need a fresh registry (e.g., for testing)
@@ -75,8 +219,22 @@ export function createProviderRegistry() {
  * Reset all dependencies (for testing)
  */
 export function resetBootstrap() {
+    // Close database if open
+    if (_database !== null) {
+        try {
+            const db = _database;
+            if (typeof db.close === 'function') {
+                db.close();
+            }
+        }
+        catch {
+            // Ignore close errors
+        }
+        _database = null;
+    }
     _dependencies = null;
     _initialized = false;
+    _asyncInitialized = false;
     _stepExecutor = null;
 }
 // Cached step executor instance

package/dist/bootstrap.js.map

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package/dist/index.d.ts

@@ -1,6 +1,6 @@
 export { MCPServer, createMCPServer } from './server.js';
 export { runStdioServer } from './stdio.js';
-export { ALL_TOOLS, TOOL_HANDLERS, workflowRunTool, workflowListTool, workflowDescribeTool, handleWorkflowRun, handleWorkflowList, handleWorkflowDescribe, traceListTool, traceGetTool, traceAnalyzeTool, handleTraceList, handleTraceGet, handleTraceAnalyze, memoryStoreTool, memoryRetrieveTool, memorySearchTool, handleMemoryStore, handleMemoryRetrieve, handleMemorySearch, discussTool, discussQuickTool, handleDiscuss, handleDiscussQuick, DISCUSS_TOOLS, DISCUSS_HANDLERS, } from './tools/index.js';
+export { ALL_TOOLS, TOOL_HANDLERS, workflowRunTool, workflowListTool, workflowDescribeTool, handleWorkflowRun, handleWorkflowList, handleWorkflowDescribe, traceListTool, traceGetTool, traceAnalyzeTool, handleTraceList, handleTraceGet, handleTraceAnalyze, memoryStoreTool, memoryRetrieveTool, memorySearchTool, handleMemoryStore, handleMemoryRetrieve, handleMemorySearch, discussTool, discussQuickTool, discussRecursiveTool, handleDiscuss, handleDiscussQuick, handleDiscussRecursive, resetProviderBridge, DISCUSS_TOOLS, DISCUSS_HANDLERS, } from './tools/index.js';
 export { ALL_RESOURCES, RESOURCE_HANDLERS, readResource, findResourceHandler, WORKFLOW_RESOURCES, AGENT_RESOURCES, POLICY_RESOURCES, SESSION_RESOURCES, } from './resources/index.js';
 export { ALL_PROMPTS, PROMPT_HANDLERS, getPrompt, getPromptHandler, executePrompt, reviewChangesPrompt, explainWorkflowPrompt, troubleshootSessionPrompt, } from './prompts/index.js';
 export { withTracing, wrapHandlersWithTracing, setTraceCollector, getTraceCollector, initializeDefaultTracing, InMemoryTraceCollector, type TraceCollector, } from './trace-wrapper.js';

package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AACzD,OAAO,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAG5C,OAAO,EACL,SAAS,EACT,aAAa,EACb,eAAe,EACf,gBAAgB,EAChB,oBAAoB,EACpB,iBAAiB,EACjB,kBAAkB,EAClB,sBAAsB,EACtB,aAAa,EACb,YAAY,EACZ,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,kBAAkB,EAClB,eAAe,EACf,kBAAkB,EAClB,gBAAgB,EAChB,iBAAiB,EACjB,oBAAoB,EACpB,kBAAkB,EAElB,WAAW,EACX,gBAAgB,EAChB,oBAAoB,EACpB,aAAa,EACb,kBAAkB,EAClB,sBAAsB,EACtB,mBAAmB,EACnB,aAAa,EACb,gBAAgB,GACjB,MAAM,kBAAkB,CAAC;AAG1B,OAAO,EACL,aAAa,EACb,iBAAiB,EACjB,YAAY,EACZ,mBAAmB,EACnB,kBAAkB,EAClB,eAAe,EACf,gBAAgB,EAChB,iBAAiB,GAClB,MAAM,sBAAsB,CAAC;AAG9B,OAAO,EACL,WAAW,EACX,eAAe,EACf,SAAS,EACT,gBAAgB,EAChB,aAAa,EACb,mBAAmB,EACnB,qBAAqB,EACrB,yBAAyB,GAC1B,MAAM,oBAAoB,CAAC;AAG5B,OAAO,EACL,WAAW,EACX,uBAAuB,EACvB,iBAAiB,EACjB,iBAAiB,EACjB,wBAAwB,EACxB,sBAAsB,EACtB,KAAK,cAAc,GACpB,MAAM,oBAAoB,CAAC;AAG5B,OAAO,EACL,cAAc,EACd,cAAc,EACd,0BAA0B,EAC1B,sBAAsB,EACtB,mBAAmB,EACnB,KAAK,gBAAgB,EACrB,KAAK,gBAAgB,EACrB,KAAK,oBAAoB,GAC1B,MAAM,iBAAiB,CAAC;AAGzB,YAAY,EACV,OAAO,EACP,SAAS,EACT,WAAW,EACX,WAAW,EACX,aAAa,EACb,UAAU,EACV,eAAe,EACf,UAAU,EACV,WAAW,EACX,QAAQ,EACR,WAAW,EACX,WAAW,EACX,kBAAkB,EAClB,eAAe,EACf,SAAS,EACT,iBAAiB,EACjB,gBAAgB,EAChB,aAAa,GACd,MAAM,YAAY,CAAC;AAEpB,OAAO,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC"}

package/dist/index.js

@@ -4,7 +4,7 @@ export { runStdioServer } from './stdio.js';
 // Tool exports
 export { ALL_TOOLS, TOOL_HANDLERS, workflowRunTool, workflowListTool, workflowDescribeTool, handleWorkflowRun, handleWorkflowList, handleWorkflowDescribe, traceListTool, traceGetTool, traceAnalyzeTool, handleTraceList, handleTraceGet, handleTraceAnalyze, memoryStoreTool, memoryRetrieveTool, memorySearchTool, handleMemoryStore, handleMemoryRetrieve, handleMemorySearch, 
 // Discuss tools
-discussTool, discussQuickTool, handleDiscuss, handleDiscussQuick, DISCUSS_TOOLS, DISCUSS_HANDLERS, } from './tools/index.js';
+discussTool, discussQuickTool, discussRecursiveTool, handleDiscuss, handleDiscussQuick, handleDiscussRecursive, resetProviderBridge, DISCUSS_TOOLS, DISCUSS_HANDLERS, } from './tools/index.js';
 // Resource exports
 export { ALL_RESOURCES, RESOURCE_HANDLERS, readResource, findResourceHandler, WORKFLOW_RESOURCES, AGENT_RESOURCES, POLICY_RESOURCES, SESSION_RESOURCES, } from './resources/index.js';
 // Prompt exports

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,iBAAiB;AACjB,OAAO,EAAE,SAAS,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AACzD,OAAO,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAE5C,eAAe;AACf,OAAO,EACL,SAAS,EACT,aAAa,EACb,eAAe,EACf,gBAAgB,EAChB,oBAAoB,EACpB,iBAAiB,EACjB,kBAAkB,EAClB,sBAAsB,EACtB,aAAa,EACb,YAAY,EACZ,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,kBAAkB,EAClB,eAAe,EACf,kBAAkB,EAClB,gBAAgB,EAChB,iBAAiB,EACjB,oBAAoB,EACpB,kBAAkB;AAClB,gBAAgB;AAChB,WAAW,EACX,gBAAgB,EAChB,oBAAoB,EACpB,aAAa,EACb,kBAAkB,EAClB,sBAAsB,EACtB,mBAAmB,EACnB,aAAa,EACb,gBAAgB,GACjB,MAAM,kBAAkB,CAAC;AAE1B,mBAAmB;AACnB,OAAO,EACL,aAAa,EACb,iBAAiB,EACjB,YAAY,EACZ,mBAAmB,EACnB,kBAAkB,EAClB,eAAe,EACf,gBAAgB,EAChB,iBAAiB,GAClB,MAAM,sBAAsB,CAAC;AAE9B,iBAAiB;AACjB,OAAO,EACL,WAAW,EACX,eAAe,EACf,SAAS,EACT,gBAAgB,EAChB,aAAa,EACb,mBAAmB,EACnB,qBAAqB,EACrB,yBAAyB,GAC1B,MAAM,oBAAoB,CAAC;AAE5B,wBAAwB;AACxB,OAAO,EACL,WAAW,EACX,uBAAuB,EACvB,iBAAiB,EACjB,iBAAiB,EACjB,wBAAwB,EACxB,sBAAsB,GAEvB,MAAM,oBAAoB,CAAC;AAE5B,qBAAqB;AACrB,OAAO,EACL,cAAc,EACd,cAAc,EACd,0BAA0B,EAC1B,sBAAsB,EACtB,mBAAmB,GAIpB,MAAM,iBAAiB,CAAC;AAwBzB,OAAO,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC"}

package/dist/schema-registry.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"schema-registry.d.ts","sourceRoot":"","sources":["../src/schema-registry.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AA2MH,OAAO,KAAK,EAAE,mBAAmB,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAC;AAEjF;;;GAGG;AACH,eAAO,MAAM,aAAa,EAAE,mBA0I3B,CAAC;AAEF;;;;GAIG;AACH,eAAO,MAAM,cAAc,EAAE,oBAsI5B,CAAC"}

package/dist/schema-registry.js

@@ -14,13 +14,13 @@ MemoryStoreInputSchema, MemoryStoreOutputSchema, MemoryRetrieveInputSchema, Memo
 // Agent tool schemas
 AgentListInputSchema, AgentListOutputSchema, AgentRunInputSchema, AgentRunOutputSchema, AgentGetInputSchema, AgentGetOutputSchema, AgentRegisterInputSchema, AgentRegisterOutputSchema, AgentRemoveInputSchema, AgentRemoveOutputSchema, AgentRecommendRequestSchema, AgentRecommendResultSchema, AgentCapabilitiesRequestSchema, AgentCapabilitiesResultSchema, 
 // Session tool schemas
-SessionCreateInputSchema, SessionCreateOutputSchema, SessionStatusInputSchema, SessionStatusOutputSchema, SessionCompleteInputSchema, SessionCompleteOutputSchema, SessionListInputSchema, SessionListOutputSchema, SessionJoinInputSchema, SessionJoinOutputSchema, SessionLeaveInputSchema, SessionLeaveOutputSchema, SessionFailInputSchema, SessionFailOutputSchema, 
+SessionCreateInputSchema, SessionCreateOutputSchema, SessionStatusInputSchema, SessionStatusOutputSchema, SessionCompleteInputSchema, SessionCompleteOutputSchema, SessionListInputSchema, SessionListOutputSchema, SessionJoinInputSchema, SessionJoinOutputSchema, SessionLeaveInputSchema, SessionLeaveOutputSchema, SessionFailInputSchema, SessionFailOutputSchema, SessionCloseStuckInputSchema, SessionCloseStuckOutputSchema, 
 // Guard tool schemas
 GuardCheckInputSchema, GuardCheckOutputSchema, GuardListInputSchema, GuardListOutputSchema, GuardApplyInputSchema, GuardApplyOutputSchema, 
 // Config tool schemas (from config domain)
 ConfigGetInputSchema, ConfigGetOutputSchema, ConfigSetInputSchema, ConfigSetOutputSchema, ConfigShowInputSchema, ConfigShowOutputSchema, 
 // Trace tool schemas
-TraceListInputSchema, TraceListOutputSchema, TraceGetInputSchema, TraceGetOutputSchema, TraceAnalyzeInputSchema, TraceAnalyzeOutputSchema, 
+TraceListInputSchema, TraceListOutputSchema, TraceGetInputSchema, TraceGetOutputSchema, TraceAnalyzeInputSchema, TraceAnalyzeOutputSchema, TraceTreeInputSchema, TraceTreeOutputSchema, TraceBySessionInputSchema, TraceBySessionOutputSchema, TraceCloseStuckInputSchema, TraceCloseStuckOutputSchema, 
 // Workflow tool schemas
 WorkflowRunInputSchema, WorkflowRunOutputSchema, WorkflowListInputSchema, WorkflowListOutputSchema, WorkflowDescribeInputSchema, WorkflowDescribeOutputSchema, 
 // Design domain schemas
@@ -40,7 +40,17 @@ ScaffoldContractInputSchema, ScaffoldContractOutputSchema, ScaffoldDomainInputSc
 // Review tool schemas
 ReviewRequestSchema, ReviewListInputSchema, ReviewResultSchema, 
 // Discussion tool schemas
-DiscussionRequestSchema, DiscussionResultSchema, } from '@defai.digital/contracts';
+DiscussionRequestSchema, DiscussionResultSchema, 
+// Research tool schemas
+ResearchRequestSchema, ResearchResultSchema, FetchRequestSchema, FetchResponseSchema, SynthesisRequestSchema, 
+// Feedback tool schemas
+SubmitFeedbackInputSchema, FeedbackRecordSchema, AgentFeedbackStatsSchema, FeedbackOverviewSchema, FeedbackHistoryInputSchema, FeedbackStatsInputSchema, FeedbackOverviewInputSchema, FeedbackAdjustmentsInputSchema, 
+// Semantic context tool schemas
+SemanticStoreRequestSchema, SemanticStoreResponseSchema, SemanticSearchRequestSchema, SemanticSearchResponseSchema, SemanticGetRequestSchema, SemanticGetResponseSchema, SemanticListRequestSchema, SemanticListResponseSchema, SemanticDeleteRequestSchema, SemanticDeleteResponseSchema, SemanticStatsRequestSchema, SemanticStatsResponseSchema, SemanticClearRequestSchema, SemanticClearResponseSchema, 
+// MCP Ecosystem tool schemas
+MCPServerRegisterRequestSchema, MCPServerRegisterResponseSchema, MCPServerListRequestSchema, MCPServerListResponseSchema, MCPServerUnregisterRequestSchema, MCPServerUnregisterResponseSchema, MCPDiscoveryRequestSchema, MCPDiscoveryResponseSchema, MCPToolInvokeRequestSchema, MCPToolInvokeResponseSchema, MCPToolsListRequestSchema, MCPToolsListResponseSchema, 
+// Parallel execution tool schemas
+ParallelExecutionRequestSchema, PreviewPlanRequestSchema, AgentParallelGroupResultSchema, } from '@defai.digital/contracts';
 /**
  * Input schema registry for all MCP tools (64 tools total)
  * INV-MCP-001: All tools MUST have input validation
@@ -65,7 +75,7 @@ export const INPUT_SCHEMAS = {
     agent_remove: AgentRemoveInputSchema,
     agent_recommend: AgentRecommendRequestSchema,
     agent_capabilities: AgentCapabilitiesRequestSchema,
-    // Session tools (7)
+    // Session tools (8)
     session_create: SessionCreateInputSchema,
     session_status: SessionStatusInputSchema,
     session_complete: SessionCompleteInputSchema,
@@ -73,6 +83,7 @@ export const INPUT_SCHEMAS = {
     session_join: SessionJoinInputSchema,
     session_leave: SessionLeaveInputSchema,
     session_fail: SessionFailInputSchema,
+    session_close_stuck: SessionCloseStuckInputSchema,
     // Guard tools (3)
     guard_check: GuardCheckInputSchema,
     guard_list: GuardListInputSchema,
@@ -81,10 +92,13 @@ export const INPUT_SCHEMAS = {
     config_get: ConfigGetInputSchema,
     config_set: ConfigSetInputSchema,
     config_show: ConfigShowInputSchema,
-    // Trace tools (3)
+    // Trace tools (6)
     trace_list: TraceListInputSchema,
     trace_get: TraceGetInputSchema,
     trace_analyze: TraceAnalyzeInputSchema,
+    trace_tree: TraceTreeInputSchema,
+    trace_by_session: TraceBySessionInputSchema,
+    trace_close_stuck: TraceCloseStuckInputSchema,
     // Workflow tools (3)
     workflow_run: WorkflowRunInputSchema,
     workflow_list: WorkflowListInputSchema,
@@ -128,9 +142,38 @@ export const INPUT_SCHEMAS = {
     // Review tools (2)
     review_analyze: ReviewRequestSchema,
     review_list: ReviewListInputSchema,
-    // Discussion tools (2)
+    // Discussion tools (3)
     discuss: DiscussionRequestSchema,
     discuss_quick: DiscussionRequestSchema, // Uses same schema with defaults
+    discuss_recursive: DiscussionRequestSchema, // Uses base schema, recursive options validated in handler
+    // Research tools (3)
+    research_query: ResearchRequestSchema,
+    research_fetch: FetchRequestSchema,
+    research_synthesize: SynthesisRequestSchema,
+    // Feedback tools (5)
+    feedback_submit: SubmitFeedbackInputSchema,
+    feedback_history: FeedbackHistoryInputSchema,
+    feedback_stats: FeedbackStatsInputSchema,
+    feedback_overview: FeedbackOverviewInputSchema,
+    feedback_adjustments: FeedbackAdjustmentsInputSchema,
+    // Semantic context tools (7)
+    semantic_store: SemanticStoreRequestSchema,
+    semantic_search: SemanticSearchRequestSchema,
+    semantic_get: SemanticGetRequestSchema,
+    semantic_list: SemanticListRequestSchema,
+    semantic_delete: SemanticDeleteRequestSchema,
+    semantic_stats: SemanticStatsRequestSchema,
+    semantic_clear: SemanticClearRequestSchema,
+    // MCP Ecosystem tools (7)
+    mcp_server_register: MCPServerRegisterRequestSchema,
+    mcp_server_list: MCPServerListRequestSchema,
+    mcp_server_unregister: MCPServerUnregisterRequestSchema,
+    mcp_tools_discover: MCPDiscoveryRequestSchema,
+    mcp_tool_invoke: MCPToolInvokeRequestSchema,
+    mcp_tools_list: MCPToolsListRequestSchema,
+    // Parallel execution tools (2)
+    parallel_run: ParallelExecutionRequestSchema,
+    parallel_plan: PreviewPlanRequestSchema,
 };
 /**
  * Output schema registry for all MCP tools (54 tools with output schemas)
@@ -157,7 +200,7 @@ export const OUTPUT_SCHEMAS = {
     agent_remove: AgentRemoveOutputSchema,
     agent_recommend: AgentRecommendResultSchema,
     agent_capabilities: AgentCapabilitiesResultSchema,
-    // Session tools (7)
+    // Session tools (8)
     session_create: SessionCreateOutputSchema,
     session_status: SessionStatusOutputSchema,
     session_complete: SessionCompleteOutputSchema,
@@ -165,6 +208,7 @@ export const OUTPUT_SCHEMAS = {
     session_join: SessionJoinOutputSchema,
     session_leave: SessionLeaveOutputSchema,
     session_fail: SessionFailOutputSchema,
+    session_close_stuck: SessionCloseStuckOutputSchema,
     // Guard tools (3)
     guard_check: GuardCheckOutputSchema,
     guard_list: GuardListOutputSchema,
@@ -173,10 +217,13 @@ export const OUTPUT_SCHEMAS = {
     config_get: ConfigGetOutputSchema,
     config_set: ConfigSetOutputSchema,
     config_show: ConfigShowOutputSchema,
-    // Trace tools (3)
+    // Trace tools (6)
     trace_list: TraceListOutputSchema,
     trace_get: TraceGetOutputSchema,
     trace_analyze: TraceAnalyzeOutputSchema,
+    trace_tree: TraceTreeOutputSchema,
+    trace_by_session: TraceBySessionOutputSchema,
+    trace_close_stuck: TraceCloseStuckOutputSchema,
     // Workflow tools (3)
     workflow_run: WorkflowRunOutputSchema,
     workflow_list: WorkflowListOutputSchema,
@@ -221,5 +268,32 @@ export const OUTPUT_SCHEMAS = {
     // Discussion tools (2)
     discuss: DiscussionResultSchema,
     discuss_quick: DiscussionResultSchema,
+    // Research tools (3)
+    research_query: ResearchResultSchema,
+    research_fetch: FetchResponseSchema,
+    // research_synthesize: Output is inline string
+    // Feedback tools (5)
+    feedback_submit: FeedbackRecordSchema,
+    feedback_stats: AgentFeedbackStatsSchema,
+    feedback_overview: FeedbackOverviewSchema,
+    // feedback_history, feedback_adjustments: Output is inline format
+    // Semantic context tools (7)
+    semantic_store: SemanticStoreResponseSchema,
+    semantic_search: SemanticSearchResponseSchema,
+    semantic_get: SemanticGetResponseSchema,
+    semantic_list: SemanticListResponseSchema,
+    semantic_delete: SemanticDeleteResponseSchema,
+    semantic_stats: SemanticStatsResponseSchema,
+    semantic_clear: SemanticClearResponseSchema,
+    // MCP Ecosystem tools (7)
+    mcp_server_register: MCPServerRegisterResponseSchema,
+    mcp_server_list: MCPServerListResponseSchema,
+    mcp_server_unregister: MCPServerUnregisterResponseSchema,
+    mcp_tools_discover: MCPDiscoveryResponseSchema,
+    mcp_tool_invoke: MCPToolInvokeResponseSchema,
+    mcp_tools_list: MCPToolsListResponseSchema,
+    // Parallel execution tools (2)
+    parallel_run: AgentParallelGroupResultSchema,
+    // parallel_plan: Output is inline execution plan
 };
 //# sourceMappingURL=schema-registry.js.map

package/dist/schema-registry.js.map

@@ -1 +1 @@
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package/dist/stdio.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"stdio.d.ts","sourceRoot":"","sources":["../src/stdio.ts"],"names":[],"mappings":"AAiBA;;;GAGG;AACH,wBAAsB,cAAc,IAAI,OAAO,CAAC,IAAI,CAAC,CAmKpD"}
+{"version":3,"file":"stdio.d.ts","sourceRoot":"","sources":["../src/stdio.ts"],"names":[],"mappings":"AAkBA;;;GAGG;AACH,wBAAsB,cAAc,IAAI,OAAO,CAAC,IAAI,CAAC,CAuKpD"}

package/dist/stdio.js

@@ -6,11 +6,15 @@ import { ALL_TOOLS, TOOL_HANDLERS } from './tools/index.js';
 import { ALL_RESOURCES, readResource } from './resources/index.js';
 import { ALL_PROMPTS, executePrompt, getPrompt } from './prompts/index.js';
 import { getToolPrefix, namespaceTools, resolveToolName } from './tool-namespacing.js';
+import { initializeAsync } from './bootstrap.js';
 /**
  * Runs the MCP server over stdio using the official MCP SDK
  * This is the main entry point for the MCP server binary
  */
 export async function runStdioServer() {
+    // Initialize SQLite storage for trace persistence
+    // This allows traces to be shared with the dashboard (ax monitor)
+    await initializeAsync();
     const toolPrefix = getToolPrefix();
     const listableTools = namespaceTools(ALL_TOOLS, toolPrefix);
     // Create MCP server with official SDK

package/dist/stdio.js.map

@@ -1 +1 @@
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package/dist/tools/agent.d.ts

@@ -33,6 +33,8 @@ export declare const agentRemoveTool: MCPTool;
 export declare const handleAgentList: ToolHandler;
 /**
  * Handler for agent_run tool
+ * Emits trace events for visibility in ax monitor
+ * Supports hierarchical tracing (INV-TR-020 through INV-TR-024)
  */
 export declare const handleAgentRun: ToolHandler;
 /**

package/dist/tools/agent.d.ts.map

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