@dedesfr/prompter 0.1.0 → 0.2.0

package/CHANGELOG.md

@@ -0,0 +1,50 @@
+# CHANGELOG
+
+## [0.2.0] - 2026-01-19
+
+### ✨ Added
+- **Re-configurable AI Tools**: `prompter init` now allows re-selection of AI tools at any time, even after initial setup
+  - Add new AI tools to existing configuration
+  - Remove unused AI tools
+  - Switch between different AI tools seamlessly
+  - Interactive checkbox interface with current tools pre-selected
+  - Non-interactive mode with `--tools` flag for automation
+
+### 🔄 Changed
+- `prompter init` no longer blocks on already-initialized projects
+- Tool selection now shows currently configured tools before prompting
+- Success messages now context-aware (initialization vs re-configuration)
+- Improved user feedback with change summaries (Added/Removed/Kept)
+
+### 🛡️ Safety
+- Enhanced prompts in `prompter/<slug>/` always preserved
+- `prompter/project.md` preserved during re-configuration
+- `AGENTS.md` preserved if already exists
+- Automatic cleanup of empty directories when removing tools
+- Cancel-safe operation (Ctrl+C) at any time
+
+### 📚 Documentation
+- Added comprehensive re-configuration guide (`docs/reconfigure-tools.md`)
+- Added before/after comparison (`docs/before-after-comparison.md`)
+- Added usage scenarios guide (`docs/usage-scenarios.md`)
+- Added implementation summary (`docs/implementation-summary.md`)
+- Updated README with re-configuration examples
+
+### 🔧 Technical
+- Added `detectConfiguredTools()` method to scan for existing workflow files
+- Added `removeToolFiles()` method for clean tool removal
+- Added `removeEmptyDirs()` method for automatic directory cleanup
+- Improved file existence checking and preservation logic
+
+### 🎯 Backward Compatibility
+- 100% backward compatible with existing installations
+- No breaking changes to command syntax or behavior
+- Fresh projects work identically to previous versions
+- No changes to workflow file format
+- No changes to other commands (`update`, `list`)
+
+## [0.1.0] - Previous Release
+- Initial release with `init`, `update`, and `list` commands
+- Support for 6 AI tools: Antigravity, Claude Code, Codex, GitHub Copilot, OpenCode, Kilo Code
+- Universal support via AGENTS.md
+- Workflow file generation with managed markers

package/README.md

@@ -41,12 +41,24 @@ prompter init
 ## Commands
 
 ```bash
-prompter init              # Initialize Prompter in your project
+prompter init              # Initialize Prompter (or re-configure tools)
 prompter update            # Update workflow files to latest version
 prompter list              # List all enhanced prompts
 prompter list --json       # Output as JSON
 ```
 
+### Re-configuring Tools
+
+You can run `prompter init` again at any time to add, remove, or switch AI tools. See [docs/reconfigure-tools.md](docs/reconfigure-tools.md) for details.
+
+```bash
+# Add or remove tools interactively
+prompter init
+
+# Or specify tools directly
+prompter init --tools github-copilot,claude
+```
+
 ## Output Structure
 
 ```

package/dist/commands/init.d.ts

@@ -5,6 +5,9 @@ interface InitOptions {
 export declare class InitCommand {
     execute(options?: InitOptions): Promise<void>;
     private fileExists;
+    private detectConfiguredTools;
+    private removeToolFiles;
+    private removeEmptyDirs;
 }
 export {};
 //# sourceMappingURL=init.d.ts.map

package/dist/commands/init.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAQA,UAAU,WAAW;IACjB,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;IACjB,aAAa,CAAC,EAAE,OAAO,CAAC;CAC3B;AAED,qBAAa,WAAW;IACd,OAAO,CAAC,OAAO,GAAE,WAAgB,GAAG,OAAO,CAAC,IAAI,CAAC;YAmKzC,UAAU;YASV,qBAAqB;YAwBrB,eAAe;YAkBf,eAAe;CAiBhC"}

package/dist/commands/init.js

@@ -8,12 +8,24 @@ import { registry } from '../core/configurators/slash/index.js';
 export class InitCommand {
     async execute(options = {}) {
         const projectPath = process.cwd();
-        console.log(chalk.blue('\n🚀 Initializing Prompter...\n'));
-        // Check if already initialized
-        if (await PrompterConfig.prompterDirExists(projectPath)) {
-            console.log(chalk.yellow('⚠️  Prompter is already initialized in this project.'));
-            console.log(chalk.gray('   Use `prompter update` to refresh workflow files.\n'));
-            return;
+        const isReInitialization = await PrompterConfig.prompterDirExists(projectPath);
+        if (isReInitialization) {
+            console.log(chalk.blue('\n🔄 Re-configuring Prompter tools...\n'));
+        }
+        else {
+            console.log(chalk.blue('\n🚀 Initializing Prompter...\n'));
+        }
+        // Detect currently configured tools if re-initializing
+        let currentTools = [];
+        if (isReInitialization) {
+            currentTools = await this.detectConfiguredTools(projectPath);
+            if (currentTools.length > 0) {
+                console.log(chalk.gray('Currently configured tools: ') + chalk.cyan(currentTools.map(t => {
+                    const tool = SUPPORTED_TOOLS.find(st => st.value === t);
+                    return tool ? tool.name : t;
+                }).join(', ')));
+                console.log();
+            }
         }
         // Select tools
         let selectedTools = [];
@@ -22,28 +34,45 @@ export class InitCommand {
         }
         else if (!options.noInteractive) {
             try {
+                const message = isReInitialization
+                    ? 'Select AI tools to configure (check/uncheck to add/remove):'
+                    : 'Select AI tools to configure:';
                 selectedTools = await checkbox({
-                    message: 'Select AI tools to configure:',
+                    message,
                     choices: SUPPORTED_TOOLS.map(tool => ({
                         name: tool.name,
                         value: tool.value,
-                        checked: tool.value === 'antigravity' // Default check Antigravity
+                        checked: isReInitialization
+                            ? currentTools.includes(tool.value)
+                            : tool.value === 'antigravity' // Default check Antigravity for new init
                     }))
                 });
             }
             catch (error) {
                 // User cancelled
-                console.log(chalk.yellow('\nInitialization cancelled.'));
+                console.log(chalk.yellow(isReInitialization ? '\nRe-configuration cancelled.' : '\nInitialization cancelled.'));
                 return;
             }
         }
-        // Create prompter directory
+        else if (isReInitialization && selectedTools.length === 0) {
+            // In non-interactive re-init without tools specified, keep current tools
+            selectedTools = currentTools;
+        }
+        // Create or ensure prompter directory
         const prompterPath = await PrompterConfig.ensurePrompterDir(projectPath);
-        console.log(chalk.green('✓') + ` Created ${chalk.cyan(PROMPTER_DIR + '/')}`);
-        // Create project.md
+        if (!isReInitialization) {
+            console.log(chalk.green('✓') + ` Created ${chalk.cyan(PROMPTER_DIR + '/')}`);
+        }
+        // Create project.md if not exists
         const projectMdPath = path.join(prompterPath, 'project.md');
-        await fs.writeFile(projectMdPath, projectTemplate, 'utf-8');
-        console.log(chalk.green('✓') + ` Created ${chalk.cyan(PROMPTER_DIR + '/project.md')}`);
+        const projectMdExists = await this.fileExists(projectMdPath);
+        if (!projectMdExists) {
+            await fs.writeFile(projectMdPath, projectTemplate, 'utf-8');
+            console.log(chalk.green('✓') + ` Created ${chalk.cyan(PROMPTER_DIR + '/project.md')}`);
+        }
+        else if (isReInitialization) {
+            console.log(chalk.gray('  project.md already exists, keeping it'));
+        }
         // Create AGENTS.md for universal support
         const agentsMdPath = path.join(projectPath, 'AGENTS.md');
         const agentsExists = await this.fileExists(agentsMdPath);
@@ -54,10 +83,32 @@ export class InitCommand {
         else {
             console.log(chalk.gray('  AGENTS.md already exists, skipping'));
         }
-        // Generate workflow files for selected tools
-        if (selectedTools.length > 0) {
+        // Handle tool changes
+        const toolsToAdd = selectedTools.filter(t => !currentTools.includes(t));
+        const toolsToRemove = currentTools.filter(t => !selectedTools.includes(t));
+        const toolsToKeep = selectedTools.filter(t => currentTools.includes(t));
+        // Remove old tool files
+        if (toolsToRemove.length > 0) {
+            console.log(chalk.blue('\n🗑️  Removing workflow files...\n'));
+            for (const toolId of toolsToRemove) {
+                const configurator = registry.get(toolId);
+                if (configurator) {
+                    try {
+                        const files = await this.removeToolFiles(projectPath, configurator);
+                        for (const file of files) {
+                            console.log(chalk.yellow('✓') + ` Removed ${chalk.cyan(file)}`);
+                        }
+                    }
+                    catch (error) {
+                        console.log(chalk.red('✗') + ` Failed to remove files for ${toolId}: ${error}`);
+                    }
+                }
+            }
+        }
+        // Generate workflow files for new tools
+        if (toolsToAdd.length > 0) {
             console.log(chalk.blue('\n📝 Creating workflow files...\n'));
-            for (const toolId of selectedTools) {
+            for (const toolId of toolsToAdd) {
                 const configurator = registry.get(toolId);
                 if (configurator) {
                     try {
@@ -72,12 +123,46 @@ export class InitCommand {
                 }
             }
         }
+        // Show kept tools
+        if (isReInitialization && toolsToKeep.length > 0 && (toolsToAdd.length > 0 || toolsToRemove.length > 0)) {
+            console.log(chalk.blue('\n✨ Keeping existing tools:\n'));
+            for (const toolId of toolsToKeep) {
+                const tool = SUPPORTED_TOOLS.find(t => t.value === toolId);
+                if (tool) {
+                    console.log(chalk.gray('  • ') + chalk.cyan(tool.name));
+                }
+            }
+        }
         // Success message
-        console.log(chalk.green('\n✅ Prompter initialized successfully!\n'));
-        console.log(chalk.blue('Next steps:'));
-        console.log(chalk.gray('  1. Edit prompter/project.md to describe your project'));
-        console.log(chalk.gray('  2. Use /prompter-enhance to transform prompts'));
-        console.log(chalk.gray('  3. Run `prompter list` to see enhanced prompts\n'));
+        if (isReInitialization) {
+            console.log(chalk.green('\n✅ Prompter tools updated successfully!\n'));
+            if (toolsToAdd.length > 0 || toolsToRemove.length > 0) {
+                console.log(chalk.blue('Summary:'));
+                if (toolsToAdd.length > 0) {
+                    console.log(chalk.green('  Added: ') + toolsToAdd.map(t => {
+                        const tool = SUPPORTED_TOOLS.find(st => st.value === t);
+                        return tool ? tool.name : t;
+                    }).join(', '));
+                }
+                if (toolsToRemove.length > 0) {
+                    console.log(chalk.yellow('  Removed: ') + toolsToRemove.map(t => {
+                        const tool = SUPPORTED_TOOLS.find(st => st.value === t);
+                        return tool ? tool.name : t;
+                    }).join(', '));
+                }
+                console.log();
+            }
+            else {
+                console.log(chalk.gray('  No changes made.\n'));
+            }
+        }
+        else {
+            console.log(chalk.green('\n✅ Prompter initialized successfully!\n'));
+            console.log(chalk.blue('Next steps:'));
+            console.log(chalk.gray('  1. Edit prompter/project.md to describe your project'));
+            console.log(chalk.gray('  2. Use /prompter-enhance to transform prompts'));
+            console.log(chalk.gray('  3. Run `prompter list` to see enhanced prompts\n'));
+        }
     }
     async fileExists(filePath) {
         try {
@@ -88,5 +173,55 @@ export class InitCommand {
             return false;
         }
     }
+    async detectConfiguredTools(projectPath) {
+        const configuredTools = [];
+        const allConfigurators = registry.getAll();
+        for (const configurator of allConfigurators) {
+            const targets = configurator.getTargets();
+            let hasFiles = false;
+            for (const target of targets) {
+                const filePath = path.join(projectPath, target.path);
+                if (await this.fileExists(filePath)) {
+                    hasFiles = true;
+                    break;
+                }
+            }
+            if (hasFiles) {
+                configuredTools.push(configurator.toolId);
+            }
+        }
+        return configuredTools;
+    }
+    async removeToolFiles(projectPath, configurator) {
+        const removedFiles = [];
+        const targets = configurator.getTargets();
+        for (const target of targets) {
+            const filePath = path.join(projectPath, target.path);
+            if (await this.fileExists(filePath)) {
+                await fs.unlink(filePath);
+                removedFiles.push(target.path);
+                // Remove empty parent directories
+                await this.removeEmptyDirs(path.dirname(filePath), projectPath);
+            }
+        }
+        return removedFiles;
+    }
+    async removeEmptyDirs(dirPath, projectPath) {
+        // Don't remove the project directory itself
+        if (dirPath === projectPath || dirPath === path.dirname(projectPath)) {
+            return;
+        }
+        try {
+            const files = await fs.readdir(dirPath);
+            if (files.length === 0) {
+                await fs.rmdir(dirPath);
+                // Recursively check parent
+                await this.removeEmptyDirs(path.dirname(dirPath), projectPath);
+            }
+        }
+        catch {
+            // Directory doesn't exist or can't be removed, ignore
+        }
+    }
 }
 //# sourceMappingURL=init.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
     "name": "@dedesfr/prompter",
-    "version": "0.1.0",
+    "version": "0.2.0",
     "description": "Enhance prompts directly in your AI coding workflow",
     "type": "module",
     "main": "dist/index.js",

package/prompt/prd-generator.md

@@ -0,0 +1,195 @@
+# Role & Expertise
+You are an experienced Product Manager specializing in creating comprehensive Product Requirements Documents (PRDs). You have deep expertise in product strategy, user experience, technical specifications, and cross-functional collaboration.
+
+---
+
+# Primary Objective
+Generate a complete, professional Product Requirements Document (PRD) that clearly defines a product or feature's purpose, scope, requirements, and success criteria. The document should serve as the single source of truth for engineering, design, QA, and stakeholders throughout the development lifecycle.
+
+# Context
+You will receive information about a product or feature that needs documentation. This may include:
+- A brief description of the feature/product idea
+- Problem statements or user pain points
+- Business objectives or goals
+- Target users or market information
+- Technical constraints or considerations
+- Success metrics or KPIs
+
+Your task is to transform this input into a structured, comprehensive PRD following the standard format below.
+
+# Process
+
+## Step 1: Information Extraction
+Analyze the provided information and identify:
+- Core problem being solved
+- Target users and their needs
+- Business objectives and constraints
+- Technical requirements or dependencies
+- Success criteria and metrics
+- Scope boundaries (what's included and excluded)
+
+## Step 2: Document Structure
+Organize the PRD using this exact structure:
+
+### Overview Section
+- Feature/Product name
+- Target release timeline
+- Team assignments (PO, Designers, Tech, QA)
+
+### Background Section
+- Context: Why this product/feature is needed
+- Current state with supporting metrics
+- Problem statement with impact analysis
+- Current workarounds (if any)
+
+### Objectives Section
+- Business objectives (3-5 specific, measurable goals)
+- User objectives (how users benefit)
+
+### Success Metrics Section
+- Primary and secondary metrics in table format
+- Current baseline, target values, measurement methods, timelines
+
+### Scope Section
+- MVP 1 goals and deliverables
+- In-scope features (with ✅)
+- Out-of-scope items (with ❌ and reasoning)
+- Future iterations roadmap
+
+### User Flow Section
+- Main user journey from start to success
+- Alternative flows and error handling
+- Edge cases
+
+### User Stories Section
+- Stories in table format with ID, description, acceptance criteria, platform
+- Use Given-When-Then format for acceptance criteria
+
+### Analytics Section
+- Event tracking requirements
+- Trigger definitions and parameters
+- JSON-formatted event structures
+
+## Step 3: Quality Enhancement
+Ensure the document includes:
+- Specific, actionable requirements (avoid vague language)
+- Clear acceptance criteria for all user stories
+- Measurable success metrics with baselines and targets
+- Realistic scope boundaries
+- Comprehensive error handling and edge cases
+
+## Step 4: Finalization
+Add supporting sections:
+- Open Questions table for unresolved items
+- Technical and business considerations
+- Migration notes (if applicable)
+- References and glossary
+
+# Input Specifications
+Provide information about your product/feature including:
+- **Product/Feature Name**: What you're building
+- **Problem**: What user/business problem this solves
+- **Target Users**: Who will use this
+- **Key Features**: Main capabilities or functionality
+- **Business Goals**: What success looks like
+- **Constraints**: Technical, timeline, or resource limitations (optional)
+- **Additional Context**: Any other relevant information
+
+# Output Requirements
+
+**Format:** Markdown document with clear hierarchy
+
+**Required Sections:**
+1. Overview (with metadata table)
+2. Quick Links (template placeholders)
+3. Background (Context + Problem Statement)
+4. Objectives (Business + User)
+5. Success Metrics (table format)
+6. Scope (MVP breakdown with in/out scope)
+7. User Flow (visual flow diagram)
+8. User Stories (detailed table)
+9. Analytics & Tracking (event tracking table)
+10. Open Questions (tracking table)
+11. Notes & Considerations
+12. Appendix (References + Glossary)
+
+**Style Guidelines:**
+- Professional, clear, and actionable language
+- Use tables for structured data (metrics, user stories, analytics)
+- Use checkmarks (✅) for in-scope, X marks (❌) for out-of-scope
+- Include placeholder links for design, technical specs, and project management tools
+- Use Given-When-Then format for acceptance criteria
+- Include JSON examples for analytics events
+- Number user stories with US-## format
+
+**Document Characteristics:**
+- Comprehensive yet scannable
+- Specific and measurable requirements
+- Clear boundaries between MVP phases
+- Ready for immediate use by engineering, design, and QA teams
+
+# Quality Standards
+
+Before finalizing, verify:
+- [ ] All sections are complete with relevant content
+- [ ] Success metrics have baseline, target, and measurement method
+- [ ] User stories have clear acceptance criteria
+- [ ] Scope clearly defines what is and isn't included
+- [ ] Analytics events are properly structured with JSON format
+- [ ] Tables are properly formatted and complete
+- [ ] Technical and business considerations are addressed
+- [ ] Document is professional and free of ambiguity
+
+# Special Instructions
+
+**When Information Is Limited:**
+- Make intelligent assumptions based on common product patterns
+- Include placeholder text in [brackets] for missing details
+- Add notes indicating where stakeholder input is needed
+- Provide examples in parentheses to guide completion
+
+**For Technical Products:**
+- Include additional technical considerations section
+- Add API documentation and technical spec placeholders
+- Specify system integration points
+
+**For Consumer Products:**
+- Emphasize user experience and flows
+- Include detailed analytics tracking
+- Focus on conversion metrics and user engagement
+
+**Formatting Rules:**
+- Use markdown tables for all structured data
+- Maintain consistent heading hierarchy (##, ###)
+- Use code blocks for user flows and JSON examples
+- Include horizontal rules (---) between major sections
+
+# Example Input Format
+
+"Create a PRD for [Feature Name]: [Brief description]. This will solve [Problem] for [Target Users]. Key features include [Feature 1], [Feature 2], [Feature 3]. Success will be measured by [Metric]. We need this by [Timeline]."
+
+# Example User Story Format
+
+| ID | User Story | Acceptance Criteria | Design | Notes | Platform | JIRA Ticket |
+|----|------------|---------------------|--------|-------|----------|-------------|
+| US-01 | As a returning user, I want to see my purchase history so that I can reorder items quickly | **Given** I'm logged into my account<br>**When** I navigate to "My Orders"<br>**Then** I see my last 10 orders sorted by date<br>**And** each order shows items, date, and total<br>**And** I can click "Reorder" on any item | [Figma link] | Cache for performance | iOS/Android/Web | PROJ-123 |
+
+# Example Analytics Event Format
+
+```json
+{
+  "Trigger": "Click",
+  "TriggerValue": "Checkout Button",
+  "Page": "Shopping Cart",
+  "Data": {
+    "CartValue": 149.99,
+    "ItemCount": 3,
+    "UserSegment": "Premium"
+  },
+  "Description": "User initiates checkout from cart page"
+}
+```
+
+---
+
+**Deliver the complete PRD immediately upon receiving product/feature information. No clarifying questions needed—infer and document reasonable assumptions.**

package/src/commands/init.ts

@@ -14,14 +14,25 @@ interface InitOptions {
 export class InitCommand {
     async execute(options: InitOptions = {}): Promise<void> {
         const projectPath = process.cwd();
+        const isReInitialization = await PrompterConfig.prompterDirExists(projectPath);
 
-        console.log(chalk.blue('\n🚀 Initializing Prompter...\n'));
+        if (isReInitialization) {
+            console.log(chalk.blue('\n🔄 Re-configuring Prompter tools...\n'));
+        } else {
+            console.log(chalk.blue('\n🚀 Initializing Prompter...\n'));
+        }
 
-        // Check if already initialized
-        if (await PrompterConfig.prompterDirExists(projectPath)) {
-            console.log(chalk.yellow('⚠️  Prompter is already initialized in this project.'));
-            console.log(chalk.gray('   Use `prompter update` to refresh workflow files.\n'));
-            return;
+        // Detect currently configured tools if re-initializing
+        let currentTools: string[] = [];
+        if (isReInitialization) {
+            currentTools = await this.detectConfiguredTools(projectPath);
+            if (currentTools.length > 0) {
+                console.log(chalk.gray('Currently configured tools: ') + chalk.cyan(currentTools.map(t => {
+                    const tool = SUPPORTED_TOOLS.find(st => st.value === t);
+                    return tool ? tool.name : t;
+                }).join(', ')));
+                console.log();
+            }
         }
 
         // Select tools
@@ -31,29 +42,45 @@ export class InitCommand {
             selectedTools = options.tools;
         } else if (!options.noInteractive) {
             try {
+                const message = isReInitialization 
+                    ? 'Select AI tools to configure (check/uncheck to add/remove):'
+                    : 'Select AI tools to configure:';
+                
                 selectedTools = await checkbox({
-                    message: 'Select AI tools to configure:',
+                    message,
                     choices: SUPPORTED_TOOLS.map(tool => ({
                         name: tool.name,
                         value: tool.value,
-                        checked: tool.value === 'antigravity' // Default check Antigravity
+                        checked: isReInitialization 
+                            ? currentTools.includes(tool.value) 
+                            : tool.value === 'antigravity' // Default check Antigravity for new init
                     }))
                 });
             } catch (error) {
                 // User cancelled
-                console.log(chalk.yellow('\nInitialization cancelled.'));
+                console.log(chalk.yellow(isReInitialization ? '\nRe-configuration cancelled.' : '\nInitialization cancelled.'));
                 return;
             }
+        } else if (isReInitialization && selectedTools.length === 0) {
+            // In non-interactive re-init without tools specified, keep current tools
+            selectedTools = currentTools;
         }
 
-        // Create prompter directory
+        // Create or ensure prompter directory
         const prompterPath = await PrompterConfig.ensurePrompterDir(projectPath);
-        console.log(chalk.green('✓') + ` Created ${chalk.cyan(PROMPTER_DIR + '/')}`);
+        if (!isReInitialization) {
+            console.log(chalk.green('✓') + ` Created ${chalk.cyan(PROMPTER_DIR + '/')}`);
+        }
 
-        // Create project.md
+        // Create project.md if not exists
         const projectMdPath = path.join(prompterPath, 'project.md');
-        await fs.writeFile(projectMdPath, projectTemplate, 'utf-8');
-        console.log(chalk.green('✓') + ` Created ${chalk.cyan(PROMPTER_DIR + '/project.md')}`);
+        const projectMdExists = await this.fileExists(projectMdPath);
+        if (!projectMdExists) {
+            await fs.writeFile(projectMdPath, projectTemplate, 'utf-8');
+            console.log(chalk.green('✓') + ` Created ${chalk.cyan(PROMPTER_DIR + '/project.md')}`);
+        } else if (isReInitialization) {
+            console.log(chalk.gray('  project.md already exists, keeping it'));
+        }
 
         // Create AGENTS.md for universal support
         const agentsMdPath = path.join(projectPath, 'AGENTS.md');
@@ -65,11 +92,34 @@ export class InitCommand {
             console.log(chalk.gray('  AGENTS.md already exists, skipping'));
         }
 
-        // Generate workflow files for selected tools
-        if (selectedTools.length > 0) {
+        // Handle tool changes
+        const toolsToAdd = selectedTools.filter(t => !currentTools.includes(t));
+        const toolsToRemove = currentTools.filter(t => !selectedTools.includes(t));
+        const toolsToKeep = selectedTools.filter(t => currentTools.includes(t));
+
+        // Remove old tool files
+        if (toolsToRemove.length > 0) {
+            console.log(chalk.blue('\n🗑️  Removing workflow files...\n'));
+            for (const toolId of toolsToRemove) {
+                const configurator = registry.get(toolId);
+                if (configurator) {
+                    try {
+                        const files = await this.removeToolFiles(projectPath, configurator);
+                        for (const file of files) {
+                            console.log(chalk.yellow('✓') + ` Removed ${chalk.cyan(file)}`);
+                        }
+                    } catch (error) {
+                        console.log(chalk.red('✗') + ` Failed to remove files for ${toolId}: ${error}`);
+                    }
+                }
+            }
+        }
+
+        // Generate workflow files for new tools
+        if (toolsToAdd.length > 0) {
             console.log(chalk.blue('\n📝 Creating workflow files...\n'));
 
-            for (const toolId of selectedTools) {
+            for (const toolId of toolsToAdd) {
                 const configurator = registry.get(toolId);
                 if (configurator) {
                     try {
@@ -84,12 +134,45 @@ export class InitCommand {
             }
         }
 
+        // Show kept tools
+        if (isReInitialization && toolsToKeep.length > 0 && (toolsToAdd.length > 0 || toolsToRemove.length > 0)) {
+            console.log(chalk.blue('\n✨ Keeping existing tools:\n'));
+            for (const toolId of toolsToKeep) {
+                const tool = SUPPORTED_TOOLS.find(t => t.value === toolId);
+                if (tool) {
+                    console.log(chalk.gray('  • ') + chalk.cyan(tool.name));
+                }
+            }
+        }
+
         // Success message
-        console.log(chalk.green('\n✅ Prompter initialized successfully!\n'));
-        console.log(chalk.blue('Next steps:'));
-        console.log(chalk.gray('  1. Edit prompter/project.md to describe your project'));
-        console.log(chalk.gray('  2. Use /prompter-enhance to transform prompts'));
-        console.log(chalk.gray('  3. Run `prompter list` to see enhanced prompts\n'));
+        if (isReInitialization) {
+            console.log(chalk.green('\n✅ Prompter tools updated successfully!\n'));
+            if (toolsToAdd.length > 0 || toolsToRemove.length > 0) {
+                console.log(chalk.blue('Summary:'));
+                if (toolsToAdd.length > 0) {
+                    console.log(chalk.green('  Added: ') + toolsToAdd.map(t => {
+                        const tool = SUPPORTED_TOOLS.find(st => st.value === t);
+                        return tool ? tool.name : t;
+                    }).join(', '));
+                }
+                if (toolsToRemove.length > 0) {
+                    console.log(chalk.yellow('  Removed: ') + toolsToRemove.map(t => {
+                        const tool = SUPPORTED_TOOLS.find(st => st.value === t);
+                        return tool ? tool.name : t;
+                    }).join(', '));
+                }
+                console.log();
+            } else {
+                console.log(chalk.gray('  No changes made.\n'));
+            }
+        } else {
+            console.log(chalk.green('\n✅ Prompter initialized successfully!\n'));
+            console.log(chalk.blue('Next steps:'));
+            console.log(chalk.gray('  1. Edit prompter/project.md to describe your project'));
+            console.log(chalk.gray('  2. Use /prompter-enhance to transform prompts'));
+            console.log(chalk.gray('  3. Run `prompter list` to see enhanced prompts\n'));
+        }
     }
 
     private async fileExists(filePath: string): Promise<boolean> {
@@ -100,4 +183,64 @@ export class InitCommand {
             return false;
         }
     }
+
+    private async detectConfiguredTools(projectPath: string): Promise<string[]> {
+        const configuredTools: string[] = [];
+        const allConfigurators = registry.getAll();
+
+        for (const configurator of allConfigurators) {
+            const targets = configurator.getTargets();
+            let hasFiles = false;
+
+            for (const target of targets) {
+                const filePath = path.join(projectPath, target.path);
+                if (await this.fileExists(filePath)) {
+                    hasFiles = true;
+                    break;
+                }
+            }
+
+            if (hasFiles) {
+                configuredTools.push(configurator.toolId);
+            }
+        }
+
+        return configuredTools;
+    }
+
+    private async removeToolFiles(projectPath: string, configurator: any): Promise<string[]> {
+        const removedFiles: string[] = [];
+        const targets = configurator.getTargets();
+
+        for (const target of targets) {
+            const filePath = path.join(projectPath, target.path);
+            if (await this.fileExists(filePath)) {
+                await fs.unlink(filePath);
+                removedFiles.push(target.path);
+
+                // Remove empty parent directories
+                await this.removeEmptyDirs(path.dirname(filePath), projectPath);
+            }
+        }
+
+        return removedFiles;
+    }
+
+    private async removeEmptyDirs(dirPath: string, projectPath: string): Promise<void> {
+        // Don't remove the project directory itself
+        if (dirPath === projectPath || dirPath === path.dirname(projectPath)) {
+            return;
+        }
+
+        try {
+            const files = await fs.readdir(dirPath);
+            if (files.length === 0) {
+                await fs.rmdir(dirPath);
+                // Recursively check parent
+                await this.removeEmptyDirs(path.dirname(dirPath), projectPath);
+            }
+        } catch {
+            // Directory doesn't exist or can't be removed, ignore
+        }
+    }
 }