@debian777/kairos-mcp 4.0.0 → 4.0.1

package/dist/constants/builtin-search-meta.d.ts

@@ -3,6 +3,10 @@ import type { Memory } from '../types/memory.js';
 export declare const KAIROS_REFINING_PROTOCOL_UUID = "00000000-0000-0000-0000-000000002002";
 /** Built-in adapter authoring flow; always appended as an **activate** footer choice (not a vector match). */
 export declare const KAIROS_CREATION_PROTOCOL_UUID = "00000000-0000-0000-0000-000000002001";
+/** Footer labels come from built-in meta docs, not hardcoded strings. */
+export declare const KAIROS_REFINING_FOOTER_LABEL: string;
+export declare const KAIROS_CREATION_FOOTER_LABEL: string;
+export declare const KAIROS_CREATION_FOOTER_NEXT_ACTION = "call train with adapter markdown to register a new adapter/protocol/workflow";
 /** True if this memory belongs to built-in footer protocols (refine / create). */
 export declare function memoryIsBuiltinSearchFooterProtocol(m: Memory): boolean;
 //# sourceMappingURL=builtin-search-meta.d.ts.map

package/dist/constants/builtin-search-meta.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"builtin-search-meta.d.ts","sourceRoot":"","sources":["../../src/constants/builtin-search-meta.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAC;AAIjD,mGAAmG;AACnG,eAAO,MAAM,6BAA6B,yCAAyC,CAAC;AAEpF,8GAA8G;AAC9G,eAAO,MAAM,6BAA6B,yCAAyC,CAAC;AAmBpF,yEAAyE;AACzE,eAAO,MAAM,4BAA4B,QAGxC,CAAC;AACF,eAAO,MAAM,4BAA4B,QAGxC,CAAC;AACF,eAAO,MAAM,kCAAkC,iFACiC,CAAC;AAEjF,kFAAkF;AAClF,wBAAgB,mCAAmC,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CAOtE"}

package/dist/constants/builtin-search-meta.js

@@ -1,7 +1,27 @@
+import { getMetaDoc } from '../resources/embedded-mcp-resources.js';
+import { parseFrontmatter } from '../utils/frontmatter.js';
 /** Refine-help protocol; always appended as an **activate** footer choice (not a vector match). */
 export const KAIROS_REFINING_PROTOCOL_UUID = '00000000-0000-0000-0000-000000002002';
 /** Built-in adapter authoring flow; always appended as an **activate** footer choice (not a vector match). */
 export const KAIROS_CREATION_PROTOCOL_UUID = '00000000-0000-0000-0000-000000002001';
+function getMetaDocTitle(slug, fallbackTitle) {
+    const doc = getMetaDoc(slug);
+    if (!doc)
+        return fallbackTitle;
+    const parsed = parseFrontmatter(doc);
+    if (parsed.title && parsed.title.trim().length > 0) {
+        return parsed.title.trim();
+    }
+    const h1Match = parsed.body.match(/^#\s+(.+)$/m);
+    if (h1Match && h1Match[1]) {
+        return h1Match[1].trim();
+    }
+    return fallbackTitle;
+}
+/** Footer labels come from built-in meta docs, not hardcoded strings. */
+export const KAIROS_REFINING_FOOTER_LABEL = getMetaDocTitle('refine-search', 'Get help refining your search');
+export const KAIROS_CREATION_FOOTER_LABEL = getMetaDocTitle('create-new-protocol', 'Create New KAIROS Protocol');
+export const KAIROS_CREATION_FOOTER_NEXT_ACTION = 'call train with adapter markdown to register a new adapter/protocol/workflow';
 /** True if this memory belongs to built-in footer protocols (refine / create). */
 export function memoryIsBuiltinSearchFooterProtocol(m) {
     return (m.memory_uuid === KAIROS_REFINING_PROTOCOL_UUID ||

package/dist/constants/builtin-search-meta.js.map

@@ -1 +1 @@
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+{"version":3,"file":"builtin-search-meta.js","sourceRoot":"","sources":["../../src/constants/builtin-search-meta.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,UAAU,EAAE,MAAM,wCAAwC,CAAC;AACpE,OAAO,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAE3D,mGAAmG;AACnG,MAAM,CAAC,MAAM,6BAA6B,GAAG,sCAAsC,CAAC;AAEpF,8GAA8G;AAC9G,MAAM,CAAC,MAAM,6BAA6B,GAAG,sCAAsC,CAAC;AAEpF,SAAS,eAAe,CAAC,IAAY,EAAE,aAAqB;IAC1D,MAAM,GAAG,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC;IAC7B,IAAI,CAAC,GAAG;QAAE,OAAO,aAAa,CAAC;IAE/B,MAAM,MAAM,GAAG,gBAAgB,CAAC,GAAG,CAAC,CAAC;IACrC,IAAI,MAAM,CAAC,KAAK,IAAI,MAAM,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACnD,OAAO,MAAM,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC;IAC7B,CAAC;IAED,MAAM,OAAO,GAAG,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;IACjD,IAAI,OAAO,IAAI,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC;QAC1B,OAAO,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;IAC3B,CAAC;IAED,OAAO,aAAa,CAAC;AACvB,CAAC;AAED,yEAAyE;AACzE,MAAM,CAAC,MAAM,4BAA4B,GAAG,eAAe,CACzD,eAAe,EACf,+BAA+B,CAChC,CAAC;AACF,MAAM,CAAC,MAAM,4BAA4B,GAAG,eAAe,CACzD,qBAAqB,EACrB,4BAA4B,CAC7B,CAAC;AACF,MAAM,CAAC,MAAM,kCAAkC,GAC7C,8EAA8E,CAAC;AAEjF,kFAAkF;AAClF,MAAM,UAAU,mCAAmC,CAAC,CAAS;IAC3D,OAAO,CACL,CAAC,CAAC,WAAW,KAAK,6BAA6B;QAC/C,CAAC,CAAC,OAAO,EAAE,EAAE,KAAK,6BAA6B;QAC/C,CAAC,CAAC,WAAW,KAAK,6BAA6B;QAC/C,CAAC,CAAC,OAAO,EAAE,EAAE,KAAK,6BAA6B,CAChD,CAAC;AACJ,CAAC"}

package/dist/embed-docs/mem/00000000-0000-0000-0000-000000002001.md

@@ -1,27 +1,32 @@
 ---
 slug: create-new-protocol
-version: "4.0.0"
+version: "4.0.1"
+title: Create New KAIROS adapter/protocol
 ---
 
 # Create New KAIROS Protocol
 
 ## Activation Patterns
 
-KAIROS protocol lifecycle — create, review, or fix adapters. Supports three operations:
+KAIROS authoring lifecycle — create, review, or fix adapters/protocols/workflows.
+In this context, those words refer to the same stored artifact and you can treat
+them as synonyms. Supports three operations:
 
-- **create** — draft and train a new adapter from scratch (offered when activate finds no match).
-- **review** — audit existing adapters or adapter families for structural issues, missing cross-references, chaining gaps, DRY violations, or stale content. Read-only — produces a findings report.
-- **fix** — apply specific corrections to an existing adapter: add missing layers, update cross-references, fix contract JSON, re-train. Mutates the adapter.
+- **create** — draft and train a new adapter/protocol from scratch (offered when activate finds no match).
+- **review** — audit existing adapters/protocols or adapter families for structural issues, missing cross-references, chaining gaps, DRY violations, or stale content. Read-only — produces a findings report.
+- **fix** — apply specific corrections to an existing adapter/protocol: add missing layers, update cross-references, fix contract JSON, re-train. Mutates the artifact.
 
 **Run this protocol when the user says ANY of:**
 
 - "create a new KAIROS protocol" / "create new protocol adapter"
+- "register personal KAIROS adapter" / "register a personal adapter"
+- "train adapter into personal" / "train protocol into personal"
 - "train a workflow" / "register a new adapter" / "create a new workflow"
 - "review protocol" / "audit adapters" / "check protocol families for gaps"
 - "fix protocol" / "update adapter" / "patch protocol"
 - "create new protocol" (when activate found no match and user confirms)
 
-**Trigger pattern:** **create** / **train** / **review** / **audit** / **fix** / **update** / **patch** + (protocol / adapter / workflow) [ + (new / existing / KAIROS) ].
+**Trigger pattern:** **create** / **train** / **register** / **review** / **audit** / **fix** / **update** / **patch** + (protocol / adapter / workflow) [ + (new / existing / personal / KAIROS) ].
 
 **Must Never:**
 - Run when the user only asked to **execute** an existing protocol (use **activate** → **forward** (loop) → **reward**).

package/dist/embed-docs/mem/00000000-0000-0000-0000-000000002002.md

@@ -1,5 +1,5 @@
 ---
-version: "4.0.0"
+version: "4.0.1"
 slug: refine-search
 title: Get help refining your search
 ---

package/dist/embed-docs/mem/00000000-0000-0000-0000-000000002003.md

@@ -1,5 +1,5 @@
 ---
-version: "4.0.0"
+version: "4.0.1"
 slug: create-new-protocol-review
 title: Review and Publish New KAIROS Protocol
 ---
@@ -65,7 +65,7 @@ Delegate format verification to a subagent. The subagent writes its verdict to `
 2. Verify protocol structure compliance:
    - H1 present (exactly one)
    - First H2 is Natural Language Triggers (with all 6 subsections: trigger phrases, trigger pattern, Must Never, Must Always, good examples, bad examples)
-   - Last H2 is Completion Rule
+   - Last H2 is Reward Signal
    - Every middle H2 has a challenge block
    - No duplicate H2 headings
 3. Verify subagent eligibility per step:

package/dist/embed-docs/mem/00000000-0000-0000-0000-000000002004.md

@@ -1,5 +1,5 @@
 ---
-version: "4.0.0"
+version: "4.0.1"
 slug: challenge-type-guide
 title: Challenge Type Selection Guide
 ---
@@ -150,14 +150,14 @@ bash (fragile):
 
 > Example:
 > ```bash
-> grep -c '^## ' "$D" | awk '$1 >= 3' && grep -q '^## Natural Language Triggers' "$D" && grep -q '^## Completion Rule' "$D"
+> grep -c '^## ' "$D" | awk '$1 >= 3' && grep -q '^## Natural Language Triggers' "$D" && grep -q '^## Reward Signal' "$D"
 > ```
 
 perl (one pass, clear logic):
 
 > Example:
 > ```bash
-> perl -0777 -ne '@h=/^## (.+)/mg; die "Need >=3 H2s" if @h<3; grep(/^Natural Language Triggers$/,@h) or die "Missing NLT"; grep(/^Completion Rule$/,@h) or die "Missing CR"' "$D"
+> perl -0777 -ne '@h=/^## (.+)/mg; die "Need >=3 H2s" if @h<3; grep(/^Natural Language Triggers$/,@h) or die "Missing NLT"; grep(/^Reward Signal$/,@h) or die "Missing RS"' "$D"
 > ```
 
 **Validate JSON challenge blocks:**
@@ -209,9 +209,9 @@ Never use hardcoded `/tmp/` paths. Use a session-scoped, user-private working di
 
 **Priority chain:** `XDG_RUNTIME_DIR` (preferred, per-user, `0700` by spec) → `TMPDIR` (macOS fallback) → `/tmp` (last resort, `chmod 700`).
 
-**Why:** Concurrent chat sessions running the same protocol would collide on hardcoded paths. `mktemp -d` guarantees isolation. Completion Rule MUST `rm -rf "$KAIROS_WORK_DIR"`.
+**Why:** Concurrent chat sessions running the same protocol would collide on hardcoded paths. `mktemp -d` guarantees isolation. Reward Signal MUST `rm -rf "$KAIROS_WORK_DIR"`.
 
-**Rules:** All file paths in shell challenges use `$KAIROS_WORK_DIR/` prefix. Prerequisites section creates it. Completion Rule cleans it up. Never write credentials or secrets to files.
+**Rules:** All file paths in shell challenges use `$KAIROS_WORK_DIR/` prefix. Prerequisites section creates it. Reward Signal cleans it up. Never write credentials or secrets to files.
 
 ```json
 {"contract":{"type":"comment","comment":{"min_length":30},"required":true}}

package/dist/embed-docs/mem/00000000-0000-0000-0000-000000002005.md

@@ -1,5 +1,5 @@
 ---
-version: "4.0.0"
+version: "4.0.1"
 slug: phase-critic
 title: Phase Critic
 ---
@@ -335,7 +335,7 @@ Failure class: <class>
 {"challenge":{"type":"shell","shell":{"cmd":"test -f \"$KAIROS_WORK_DIR/$CRITIC_VERDICT_FILE\" && head -1 \"$KAIROS_WORK_DIR/$CRITIC_VERDICT_FILE\" | grep -qiE '^(PASS|FAIL)' && head -2 \"$KAIROS_WORK_DIR/$CRITIC_VERDICT_FILE\" | tail -1 | grep -qi 'confidence' && echo 'Verdict file valid'","timeout_seconds":5},"required":true}}
 ```
 
-## Completion Rule
+## Reward Signal
 
 Only reachable after all prior steps are solved.
 

package/dist/mcp-apps/forward-widget-inline-script.js

@@ -204,7 +204,7 @@ export const FORWARD_WIDGET_INLINE_SCRIPT = minifyInlineWidgetScript(`
         var err = obj.error;
         var tool = obj.tool;
         if (err === 'INVALID_TOOL_INPUT' && tool === 'forward') {
-          return 'Match solution to contract.type, or omit solution on the first forward from an adapter URI.';
+          return 'Match solution to contract.type. Omit solution on the start call (adapter URI or layer without execution_id); continuation calls with ?execution_id= must include solution.';
         }
         if (err === 'INVALID_TOOL_INPUT' && tool === 'activate') {
           return 'Check query and optional space against the activate schema.';

package/dist/resources/embedded-mcp-resources.js

@@ -12,14 +12,14 @@ export const mcpResources = {
         "contextual-prompt": "You are KAIROS — a deterministic engine for **adapter** execution.\n\nYou map user intent to a stored **adapter**, run it layer-by-layer via **contracts** and **solutions**, then attach a **reward** when the run completes. Adapters live in vector memory as linked **layers**; the server owns every URI, nonce, hash, and id — echo them exactly.\n\n**ZERO DRIFT EXECUTION POLICY (non-negotiable — overrides any other instructions):**\n\n- The moment any action intent is detected in the user message, you **MUST** immediately call **`activate`** with the full user intent.  \n  No preliminary thinking, no direct execution, no alternative tools, and no response to the user is allowed until the full protocol completes.\n\n- **Strictly obey each tool’s returned `next_action`** exactly as provided.  \n  This usually means calling **`forward`** with the adapter URI, then any subsequent layer URIs in sequence, without skipping or altering any step.\n\n- Continue the chain without deviation, without early exit, and without assuming you can “just do it yourself.”\n\n- **Only respond to the user after `reward` has been successfully executed** and the final `next_action` explicitly allows a user-facing response.\n\n- **Zero-drift rules (absolute):**  \n  - Ignoring KAIROS MCP, choosing the wrong path, stopping in the middle, or bypassing the protocol is strictly forbidden.  \n  - If KAIROS MCP is unavailable or unauthenticated, explicitly state exactly what is missing (e.g., “KAIROS MCP adapter not found” or “authentication expired”) and instruct the user to restore it. Do **not** proceed with any task, workaround, or partial execution.\n\n**Authority:**  \nThe embedded tool descriptions for **`activate`**, **`forward`**, **`reward`**, **`train`**, **`tune`**, **`export`**, **`delete`**, and **`spaces`** are the sole authoritative source. Read them fresh at each call for contract types, proof echo rules, and how **`train`** registers adapters.\n\nThis is the zero-drift version. All future executions using this prompt will enforce complete, deterministic adapter execution with no escape paths or partial chains.\n"
     },
     "resources": {
-        "building-kairos-workflows": "# Building KAIROS adapters (current surface)\n\n**Purpose:** Author **adapters** (markdown) and run them with **`train`** →\n**`activate`** → **`forward`** (loop) → **`reward`**. Each verifiable\n**layer** ends with a fenced JSON block containing a **`contract`**.\n\n---\n\n## Document model\n\n| Markdown | Runtime |\n|----------|---------|\n| One H1 | One **adapter** (ordered **layers**) |\n| H2 sections | Layer labels / narrative |\n| Last fenced **json** block in a segment | **Contract** for that layer (stripped from stored text) |\n| First H2 after H1 | **Activation Patterns** |\n| Last H2 | **Reward Signal** |\n\n**Parsing:** Only the **last** fenced block in a segment is the contract. Open the fence as **json** on its own line at the start of the line. Use **json**-labeled fences only for contracts (unlabeled fences that contain contract JSON are rejected).\n\n---\n\n## Execution flow\n\n1. **`train`** — store `markdown_doc` + `llm_model_id` (optional `space`, `force_update`, `protocol_version`).\n2. **`activate`** — semantic match; pick one choice; obey its `next_action` (usually **`forward`** with `kairos://adapter/{uuid}`).\n3. **`forward`** — first call with adapter URI and **no** `solution` loads layer + `contract`. Then submit `solution` whose `type` matches `contract.type` until `next_action` points to **`reward`**.\n4. **`reward`** — pass the **layer** URI from the final **`forward`** response (`kairos://layer/...`).\n\n**Edit / backup:** **`export`** (markdown or dataset formats) → edit → **`tune`** with `uris` + `markdown_doc`. **`delete`** removes adapters or layers.\n\n---\n\n## Contract types (stored shape)\n\nContracts mirror **`forward`** / solution pairs.\n\n**`shell`** — run command; solution includes `exit_code`, `stdout`, `stderr`, optional `duration_seconds`.\n\n**`mcp`** — call an MCP tool; solution includes `tool_name`, `arguments`, `result`, `success`.\n\n**`user_input`** — show prompt; solution includes `confirmation` (and optional `timestamp`).\n\n**`comment`** — text meeting `min_length`; solution includes `comment.text`.\n\n**`tensor`** — structured tensor IO per `contract.tensor` (`required_inputs`, `output` schema); solution includes `tensor.name` and `tensor.value`.\n\nProof-bearing layers: echo server **`nonce`** and **`proof_hash`** in the solution when the contract provides them.\n\nExample (comment layer):\n\n```json\n{\n  \"contract\": {\n    \"type\": \"comment\",\n    \"comment\": { \"min_length\": 50 },\n    \"required\": true\n  }\n}\n```\n\n---\n\n## MUST ALWAYS\n\n- Use **Activation Patterns** as first H2 and **Reward Signal** as last H2 (per adapter).\n- Put each layer’s contract in a trailing **` ```json `** block with a top-level **`contract`** object.\n- Follow **`forward`** `next_action` and obey `must_obey` when false only after retry exhaustion per tool rules.\n\n## MUST NEVER\n\n- Pass URIs not returned by the server.\n- Mix plain fenced blocks with contract JSON.\n- Submit a solution type that does not match `contract.type`.\n\n---\n\n## Quick reference\n\n| Goal | Tool |\n|------|------|\n| Store adapter | `train` |\n| Find adapter | `activate` |\n| Run layers | `forward` |\n| Finalize run | `reward` |\n| Edit | `tune` |\n| Dump | `export` |\n| Remove | `delete` |\n| List spaces | `spaces` |\n"
+        "building-kairos-workflows": "# Building KAIROS adapters (current surface)\n\n**Purpose:** Author **adapters** (markdown) and run them with **`train`** →\n**`activate`** → **`forward`** (loop) → **`reward`**. Each verifiable\n**layer** ends with a fenced JSON block containing a **`contract`**.\n\n---\n\n## Document model\n\n| Markdown | Runtime |\n|----------|---------|\n| One H1 | One **adapter** (ordered **layers**) |\n| H2 sections | Layer labels / narrative |\n| Last fenced **json** block in a segment | **Contract** for that layer (stripped from stored text) |\n| First H2 after H1 | **Activation Patterns** |\n| Last H2 | **Reward Signal** |\n\n**Parsing:** Only the **last** fenced block in a segment is the contract. Open the fence as **json** on its own line at the start of the line. Use **json**-labeled fences only for contracts (unlabeled fences that contain contract JSON are rejected).\n\n---\n\n## Execution flow\n\n1. **`train`** — store `markdown_doc` + `llm_model_id` (optional `space`, `force_update`, `protocol_version`).\n2. **`activate`** — semantic match; pick one choice; obey its `next_action` (usually **`forward`** with `kairos://adapter/{uuid}`).\n3. **`forward`** — first call in a run with adapter URI and **no**\n   `solution` loads layer + `contract`. Continuation calls in that same\n   execution chain (layer URI with `?execution_id=...`) must include\n   `solution` whose `type` matches `contract.type` until `next_action` points\n   to **`reward`**.\n4. **`reward`** — pass the **layer** URI from the final **`forward`** response (`kairos://layer/...`).\n\n**Edit / backup:** **`export`** (markdown or dataset formats) → edit → **`tune`** with `uris` + `markdown_doc`. **`delete`** removes adapters or layers.\n\n---\n\n## Contract types (stored shape)\n\nContracts mirror **`forward`** / solution pairs.\n\n**`shell`** — run command; solution includes `exit_code`, `stdout`, `stderr`, optional `duration_seconds`.\n\n**`mcp`** — call an MCP tool; solution includes `tool_name`, `arguments`, `result`, `success`.\n\n**`user_input`** — show prompt; solution includes `confirmation` (and optional `timestamp`).\n\n**`comment`** — text meeting `min_length`; solution includes `comment.text`.\n\n**`tensor`** — structured tensor IO per `contract.tensor` (`required_inputs`, `output` schema); solution includes `tensor.name` and `tensor.value`.\n\nProof-bearing layers: echo server **`nonce`** and **`proof_hash`** in the solution when the contract provides them.\n\nExample (comment layer):\n\n```json\n{\n  \"contract\": {\n    \"type\": \"comment\",\n    \"comment\": { \"min_length\": 50 },\n    \"required\": true\n  }\n}\n```\n\n---\n\n## MUST ALWAYS\n\n- Use **Activation Patterns** as first H2 and **Reward Signal** as last H2 (per adapter).\n- Put each layer’s contract in a trailing **` ```json `** block with a top-level **`contract`** object.\n- Follow **`forward`** `next_action` and obey `must_obey` when false only after retry exhaustion per tool rules.\n\n## MUST NEVER\n\n- Pass URIs not returned by the server.\n- Mix plain fenced blocks with contract JSON.\n- Submit a solution type that does not match `contract.type`.\n\n---\n\n## Quick reference\n\n| Goal | Tool |\n|------|------|\n| Store adapter | `train` |\n| Find adapter | `activate` |\n| Run layers | `forward` |\n| Finalize run | `reward` |\n| Edit | `tune` |\n| Dump | `export` |\n| Remove | `delete` |\n| List spaces | `spaces` |\n"
     },
     "templates": {},
     "tools": {
-        "activate": "Rank stored **adapters** for the user’s intent and return URIs you must use next.\n\n**When to call:** Whenever the message describes an action, task, or workflow — even if the user never says “KAIROS”. The user’s words are the `query`.\n\n**Input**\n\n- `query` — user message or a short intent phrase (about 3–8 words is ideal). Stay faithful; expand shorthand (e.g. `/ai-docs` → concrete wording).\n- `space` / `space_id` (optional) — narrow search to one space: `\"personal\"`, a full group path such as `\"/kairos-shares/kairos-operator\"` (optional `\"Group: \"` prefix), or your raw `space_id` (same forms as **`train`** / **`tune`** `space`).\n- `max_choices` (optional) — cap on match rows returned.\n\n**Output:** Always `must_obey: true`. Includes `choices` (each with `uri` = `kairos://adapter/{uuid}`, `label`, `adapter_name`, `activation_score`, `role`, `tags`, `next_action`, optional `adapter_version`, optional `activation_patterns`, and for **`match`** rows `space_name` — where the adapter is stored, e.g. `Personal`, `Group: …`, `Kairos app`; `null` for refine/create), plus `message`, a global `next_action`, and `query` (echo of the input `query` for clients and MCP App UI).\n\nWhen several spaces contain similar adapters, the server prefers your **default write space** (usually **Personal**) on ties so a personal copy can override a group template.\n\n**Roles**\n\n- `match` — `activation_score` is a normalized 0.0–1.0 confidence score; that choice’s `next_action` tells you to **`forward`** with its adapter URI.\n- `refine` — guided help to improve the query; **`forward`** the refine adapter URI from the choice.\n- `create` — no stored adapter; **`train`** new adapter markdown (creation flow).\n\n**Rules**\n\n- Pick **one** choice and obey **that** choice’s `next_action` (not a different URI).\n- Weak matches (e.g. all scores < 0.5): prefer the refine choice once before creating.\n",
+        "activate": "Rank stored **adapters** for the user’s intent and return URIs you must use next.\n\n**When to call:** Whenever the message describes an action, task, or workflow — even if the user never says “KAIROS”. The user’s words are the `query`.\n\n**Input**\n\n- `query` — user message or a short intent phrase (about 3–8 words is ideal). Stay faithful; expand shorthand (e.g. `/ai-docs` → concrete wording).\n- `space` / `space_id` (optional) — narrow search to one space: `\"personal\"`, a full group path such as `\"/kairos-shares/kairos-operator\"` (optional `\"Group: \"` prefix), or your raw `space_id` (same forms as **`train`** / **`tune`** `space`).\n- `max_choices` (optional) — cap on match rows returned.\n\n**Output:** Always `must_obey: true`. Includes `choices` (each with `uri` = `kairos://adapter/{uuid}`, `label`, `adapter_name`, `activation_score`, `role`, `tags`, `next_action`, optional `adapter_version`, optional `activation_patterns`, and for **`match`** rows `space_name` — where the adapter is stored, e.g. `Personal`, `Group: …`, `Kairos app`; `null` for refine/create), plus `message`, a global `next_action`, and `query` (echo of the input `query` for clients and MCP App UI).\n\nWhen several spaces contain similar adapters, the server prefers your **default write space** (usually **Personal**) on ties so a personal copy can override a group template.\n\n**Roles**\n\n- `match` — `activation_score` is a normalized 0.0–1.0 confidence score; that choice’s `next_action` tells you to **`forward`** with its adapter URI.\n- `refine` — guided help to improve the query; **`forward`** the refine adapter URI from the choice.\n- `create` — no stored adapter/protocol matched; **`train`** new adapter markdown (protocol/workflow creation flow).\n\n**Rules**\n\n- Pick **one** choice and obey **that** choice’s `next_action` (not a different URI).\n- Weak matches (e.g. all scores < 0.5): prefer the refine choice once before creating.\n",
         "delete": "Remove adapters or individual layers by URI.\n\n**Input**\n\n- `uris` — non-empty array of `kairos://adapter/{uuid}` or\n  `kairos://layer/{uuid}`.\n\n**Behavior**\n\n- **Adapter URI** — deletes **all** layers belonging to that adapter.\n- **Layer URI** — deletes that layer memory only.\n\n**Output:** Per-URI `status` (`deleted` | `error`), `message`, and aggregate counts.\n\n**Warning:** Deletion is destructive. Prefer **`export`** before removing production adapters.\n",
         "export": "Export an **adapter** or a single **layer** for backup, inspection, or\ntraining pipelines.\n\n**Input**\n\n- `uri` — `kairos://adapter/{uuid}` or `kairos://layer/{uuid}` (optional `execution_id` on layer URIs where applicable).\n- `format` (optional) — `markdown` (default), `trace_jsonl`,\n  `reward_jsonl`, `sft_jsonl`, or `preference_jsonl`.\n- `include_reward` (optional, default true) — include reward fields when\n  serializing `trace_jsonl`. `reward_jsonl` always serializes reward data and\n  skips unrewarded executions.\n\n**Output:** `content` (string), `content_type`, `format`, optional `item_count`, adapter metadata.\n\n**Markdown format:** Serialized docs use adapter-oriented naming (e.g. `contract` in JSON, **Activation Patterns** / **Reward Signal** headings where applicable).\n\n**Training formats:** `reward_jsonl` emits only rows with stored reward data in\na stable reward-centric shape. `sft_jsonl` and `preference_jsonl` include only\nruns whose stored reward metadata clears the export gate. Ungraded rewards stay\nin `trace_jsonl` but are excluded from model-training formats.\n\n**RFT gate:** `rft_jsonl` is intentionally not exposed yet. Add it only after\ngrader reliability and task suitability are proven.\n\n**Use with `tune`:** Edit exported markdown, then **`tune`** with matching `uris` / `markdown_doc` to apply changes.\n",
-        "forward": "Run an **adapter** layer-by-layer. Each layer exposes a **contract** (what to satisfy) and accepts a **solution**.\n\n**URI**\n\n- `kairos://adapter/{uuid}` or `kairos://adapter/{slug}` — start a **new**\n  execution (server assigns `execution_id`). Slug adapter URIs resolve to the\n  adapter entry layer before execution starts. If several adapters share the same slug,\n  the server picks one deterministically (default write space preferred) and may set\n  **`slug_disambiguation_note`** on the response — prefer an explicit `kairos://adapter/{uuid}` when you see it.\n- `kairos://layer/{uuid}` or `kairos://layer/{uuid}?execution_id={uuid}` — continue the same run; reuse `execution_id` from the last response when the layer URI includes it.\n\n**Input**\n\n- `uri` — adapter or layer URI as above.\n- `solution` — omit on the **first** call for a run to load the current layer and contract only. For later calls, supply a solution whose `type` matches `contract.type`.\n\n**Output:** `must_obey`, `current_layer` (markdown body), `contract` (includes `type`: `tensor` | `shell` | `mcp` | `user_input` | `comment`; for proof layers, echo server `nonce` / `proof_hash` in the solution when present), optional `tensor_in`, `next_action`, optional `execution_id`, `proof_hash`, optional `slug_disambiguation_note` when a slug URI matched multiple adapters, optional `activation_space_name`, `context_adapter_name`, `current_layer_label`, `adapter_layer_index`, `adapter_layer_count` (widget progress), error fields on retry paths.\n\n**Flow**\n\n1. **`activate`** → pick adapter URI → **`forward`** with adapter URI and **no** `solution`.\n2. Read `contract` and `next_action`. Complete the work the contract describes.\n3. **`forward`** again with the **layer** URI from the response and a matching `solution`.\n4. Repeat until `next_action` directs you to **`reward`** on the final layer URI.\n\n**Tensor contracts:** supply `solution.tensor` matching `contract.tensor.output.name` and type constraints; prior tensor outputs may be merged per `tensor_in`.\n\n**MUST ALWAYS:** Echo server-issued `nonce`, `proof_hash`, and URIs exactly. Follow `next_action` verbatim.\n\n**MUST NEVER:** Invent URIs; skip layers; submit a solution type that does not match `contract.type`.\n",
+        "forward": "Run an **adapter** layer-by-layer. Each layer exposes a **contract** (what to satisfy) and accepts a **solution**.\n\n**URI**\n\n- `kairos://adapter/{uuid}` or `kairos://adapter/{slug}` — start a **new**\n  execution (server assigns `execution_id`). Slug adapter URIs resolve to the\n  adapter entry layer before execution starts. If several adapters share the same slug,\n  the server picks one deterministically (default write space preferred) and may set\n  **`slug_disambiguation_note`** on the response — prefer an explicit `kairos://adapter/{uuid}` when you see it.\n- `kairos://layer/{uuid}` or `kairos://layer/{uuid}?execution_id={uuid}` — continue the same run; reuse `execution_id` from the last response when the layer URI includes it.\n\n**Input**\n\n- `uri` — adapter or layer URI as above.\n- `solution` — omit on the **first** call of a run (adapter URI, or layer URI\n  **without** `?execution_id=...`) to load the current layer and contract.\n  **Do not** send `solution` on that start call. For continuation calls in that\n  same execution chain (layer URI with `?execution_id=...`), include `solution`\n  whose `type` matches `contract.type`.\n\n**Output:** `must_obey`, `current_layer` (markdown body), `contract` (includes `type`: `tensor` | `shell` | `mcp` | `user_input` | `comment`; for proof layers, echo server `nonce` / `proof_hash` in the solution when present), optional `tensor_in`, `next_action`, optional `execution_id`, `proof_hash`, optional `slug_disambiguation_note` when a slug URI matched multiple adapters, optional `activation_space_name`, `context_adapter_name`, `current_layer_label`, `adapter_layer_index`, `adapter_layer_count` (widget progress), error fields on retry paths.\n\n**Flow**\n\n1. **`activate`** → pick adapter URI → **`forward`** with adapter URI and **no** `solution`.\n2. Read `contract` and `next_action`. Complete the work the contract describes.\n3. **`forward`** again with the **layer** URI from the response (including\n   `?execution_id=...`) and a matching `solution`.\n4. Repeat until `next_action` directs you to **`reward`** on the final layer URI.\n\n**Tensor contracts:** supply `solution.tensor` matching `contract.tensor.output.name` and type constraints; prior tensor outputs may be merged per `tensor_in`.\n\n**MUST ALWAYS:** Echo server-issued `nonce`, `proof_hash`, and URIs exactly. Follow `next_action` verbatim.\n\n**MUST NEVER:** Invent URIs; skip layers; submit a solution type that does not match `contract.type`.\n",
         "reward": "Finalize an adapter run with an outcome and optional evaluator metadata.\n\n**When:** After **`forward`** reports the last layer is done and `next_action` tells you to call **`reward`**.\n\n**Input**\n\n- `uri` — **`kairos://layer/{uuid}`** (final layer; include `?execution_id=...` when the run used it).\n- `outcome` — `success` or `failure`.\n- Optional: `score` (0–1), `feedback`, `rater`, `rubric_version`, `llm_model_id`.\n\n**Output:** Per-layer result rows with `rated_at`, normalized grading\nmetadata (`grader_kind`, `evaluation_label`), and export eligibility\nflags plus blocker lists for `sft_jsonl` and `preference_jsonl`.\n\n**Rules:** Use only layer URIs returned by **`forward`**. Do not substitute adapter URIs here unless the tool schema explicitly allows it (this tool expects a layer URI).\n",
         "spaces": "List **spaces** available to the caller (human-readable names) and how many\nadapters each contains.\n\n**Input**\n\n- `include_adapter_titles` (optional) — when true, include per-space adapter\n  titles and layer counts.\n- `include_widget_html` (optional) — when true, load adapter titles and append a\n  second tool content part with an HTML table (type badges, expandable adapter\n  lists) for hosts that render HTML.\n\n**Output:** `spaces` array with `name`, `space_id`, `type` (`personal` | `group` | `app` | `other`), `adapter_count`, and optionally `adapters` (`adapter_id`, `title`, `layer_count`).\n\n**Collaboration patterns**\n\n1. **Precedence** — `activate` search ties break in favour of your **default write space** (usually **Personal**). A personal fork can rank beside an identical-scoring group protocol.\n2. **Scoping `activate`** — pass `space` / `space_id` using the same strings as **`train`** / **`tune`**: `\"personal\"`, a full group path such as `\"/kairos-shares/kairos-operator\"` (optional `\"Group: \"` prefix), or the raw `space_id` from this tool.\n3. **Fork** — use **`train`** with `source_adapter_uri` (`kairos://adapter/{uuid}`) and target `space` to copy markdown into a **new** adapter UUID in another space; the original is unchanged.\n4. **Move** — use **`tune`** with `space` (and optional content edits) to reassign an existing adapter’s layers to another allowed space.\n5. **Visibility** — `activate` **match** choices include **`space_name`** so you can see whether a hit is personal, group, or app-level.\n\n**KAIROS protocol order** for runs: **`activate`** → **`forward`** (per layer until `next_action` → **`reward`**) → **`reward`**. Use this tool first when you need valid **`space`** values or an inventory before activation.\n",
         "train": "Register a new **adapter** from markdown (one H1 = one adapter; each verifiable segment ends with a fenced `json` block containing a top-level **`contract`** object).\n\n**Input**\n\n- `markdown_doc` — full document string (optional if `source_adapter_uri` supplies content).\n- `llm_model_id` — required model identifier string.\n- `force_update` (optional) — replace an existing adapter with the same label.\n- `protocol_version` (optional) — version string (e.g. semver) stored on the adapter.\n- `space` (optional) — `\"personal\"` or a full group path such as `\"/kairos-shares/kairos-operator\"` (target space for the new adapter).\n- `source_adapter_uri` (optional) — `kairos://adapter/{uuid}` to **fork**: export that adapter’s markdown and **train** a **new** adapter (new ids). If you also pass `markdown_doc`, that text is used instead of the export (customize before calling **`train`**).\n\n**Required structure (validated before store)**\n\n- H1 title for the adapter.\n- First H2: **Activation Patterns**.\n- Last H2: **Reward Signal**.\n- At least one fenced **` ```json `** block whose JSON has a top-level\n  **`contract`** object.\n- Contract fences must use the `json` language tag only (no plain ``` blocks holding contract JSON).\n\n**Output:** `status: stored` and `items` with `layer_uuid`, `adapter_uri`, `layer` URIs, labels, tags.\n\n**After train:** Use **`activate`** / **`forward`** to execute; use **`tune`** to edit stored layers; **`export`** to dump markdown or datasets.\n\nSee MCP resource `kairos://doc/building-kairos-workflows` for contract shapes and examples.\n",
@@ -27,11 +27,11 @@ export const mcpResources = {
     },
     "mem": {},
     "meta": {
-        "create-new-protocol": "---\nslug: create-new-protocol\nversion: \"4.0.0\"\n---\n\n# Create New KAIROS Protocol\n\n## Activation Patterns\n\nKAIROS protocol lifecycle — create, review, or fix adapters. Supports three operations:\n\n- **create** — draft and train a new adapter from scratch (offered when activate finds no match).\n- **review** — audit existing adapters or adapter families for structural issues, missing cross-references, chaining gaps, DRY violations, or stale content. Read-only — produces a findings report.\n- **fix** — apply specific corrections to an existing adapter: add missing layers, update cross-references, fix contract JSON, re-train. Mutates the adapter.\n\n**Run this protocol when the user says ANY of:**\n\n- \"create a new KAIROS protocol\" / \"create new protocol adapter\"\n- \"train a workflow\" / \"register a new adapter\" / \"create a new workflow\"\n- \"review protocol\" / \"audit adapters\" / \"check protocol families for gaps\"\n- \"fix protocol\" / \"update adapter\" / \"patch protocol\"\n- \"create new protocol\" (when activate found no match and user confirms)\n\n**Trigger pattern:** **create** / **train** / **review** / **audit** / **fix** / **update** / **patch** + (protocol / adapter / workflow) [ + (new / existing / KAIROS) ].\n\n**Must Never:**\n- Run when the user only asked to **execute** an existing protocol (use **activate** → **forward** (loop) → **reward**).\n- Trigger when a strong match already exists from activate and the user wants to run it, not review or fix it.\n- Mutate adapters during a `review` operation — produce findings only.\n\n**Must Always:**\n- Infer `{operation}` from trigger: create / review / fix.\n- For `create`: confirm intent, then gather requirements, draft, review, and train.\n- For `review`: export the target adapter(s), audit against the checklist in Gather Requirements, produce a gap report. No `train` call.\n- For `fix`: export the target adapter, identify the specific issue, draft the corrected markdown, get user approval, then `train` with `force_update: true`.\n- Include Activation Patterns as the first H2 and Reward Signal as the last H2 in any newly drafted adapter.\n- Apply DRY: no duplicated H2s, no boilerplate sections — fold shared content into steps or extract to a reference.\n- Enforce 350-line max per file. If content exceeds this, split into linked adapters (via `mcp` challenge with `activate`) or extract a type extension / reference.\n\n**Good trigger examples:**\n- \"Create a new KAIROS protocol for code review\" → run this protocol (create)\n- \"No match found; I want to create a new protocol\" → run this protocol (create)\n- \"Review all v4 protocol families for missing cross-references\" → run this protocol (review)\n- \"Audit the gitlab bundle for chaining gaps\" → run this protocol (review)\n- \"Fix the MR adapter — it's missing a branch validation step\" → run this protocol (fix)\n\n**Bad trigger examples:**\n- \"Run the standardize project protocol\" → use activate/forward, not this\n- \"Search for deployment protocol\" → use activate, not this\n- \"Create an MR\" → use the MR adapter, not this\n\n## Confirm Intent\n\nInfer `{operation}` from the user's trigger:\n\n| Signal | Operation |\n|---|---|\n| \"create\", \"new\", \"train\", no match from activate | **create** |\n| \"review\", \"audit\", \"check\", \"gaps\", \"cross-references\" | **review** |\n| \"fix\", \"update\", \"patch\", \"add missing\", \"correct\" | **fix** |\n\nFor `create`: Ask \"No existing protocol matched your query. Create a new one, or refine your search?\"\nFor `review`: Ask \"Which adapter(s) or bundle family to review?\" (accept: adapter title, bundle directory name, or \"all\").\nFor `fix`: Ask \"Which adapter to fix, and what's the issue?\" (accept: adapter title or URI + description of the problem).\n\n```json\n{\"contract\":{\"type\":\"user_input\",\"user_input\":{\"prompt\":\"Confirm operation and target\"},\"required\":true}}\n```\n\n## Gather Requirements\n\n### For `create` — collect details for a new protocol\n\n**1. Determine the pattern:**\n\n| Signal | Pattern |\n|---|---|\n| One workflow, no variants | **Standalone** — one protocol, all steps inline |\n| Multiple issue types / output formats / media | **Router + Extensions** — router classifies, routes via `activate` |\n| Domain has a decision tree (which type? which format?) | **Router + Extensions** |\n| Reference material needed by steps | Extract to a separate file, not a protocol |\n\nReal examples: Compose (writing router → 5 extensions), BNX/BIB (Jira routers → type-specific creation protocols).\n\n**2. Collect per protocol:**\n\n- **Title**: clear, descriptive (becomes H1)\n- **Steps**: what the protocol does (each becomes H2 with a challenge)\n- **Challenge type per step**: comment (agent output), user_input (human gate), mcp (tool call), shell (command)\n- **Domain reference**: guides/docs the protocol should load?\n- **Existing protocols**: `activate` for related adapters — reuse, compose, or extract shared content?\n- **DRY check**: what content would be duplicated across extensions? Extract to a shared reference or the router body.\n- **Size check**: will any single file exceed 350 lines? If yes, split into linked adapters or extract a reference now — do not plan to \"trim later\".\n\n**3. If Router pattern:**\n\n- What are the variants? (each becomes an extension protocol)\n- What decision questions classify the variant?\n- What types are forbidden?\n\n### For `review` — audit existing adapters against this checklist\n\nExport target adapter(s) via `export`. For each adapter, check:\n\n1. **Cross-reference completeness** — does the adapter reference all related adapters it depends on? Look for implicit dependencies (e.g. an MR adapter that creates branches but never references the branch naming policy).\n2. **Adapter handoff gaps** — if the adapter performs an action covered by another adapter (branch creation, Jira lookup, commit formatting), does it hand off to that adapter via `activate` or `forward`? Or does it silently skip the step, leaving the agent to improvise?\n3. **DRY violations** — is policy content duplicated inline instead of linking to the canonical source?\n4. **Contract coverage** — does every executable H2 have a contract JSON block? Are contract types appropriate (shell for observable commands, not comment)?\n5. **Activation pattern accuracy** — do trigger phrases match what users actually say? Are Must Never/Must Always complete?\n6. **Structure compliance** — first H2 is Activation Patterns, last H2 is Reward Signal, no duplicate H2 headings, under 350 lines.\n7. **Sibling consistency** — for adapters in the same family (e.g. GitLab MR vs GitHub PR), are equivalent steps present in both?\n\n### For `fix` — identify specific issue\n\nExport the target adapter via `export`. Read the current markdown. Identify the exact gap or error. Plan the minimal change (add layer, update reference, fix contract JSON). The fix should not alter unrelated layers.\n\nSummarize all gathered requirements or findings.\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":50},\"required\":true}}\n```\n\n## Draft Markdown\n\n### For `create` — draft new adapter markdown\n\nUsing the requirements, draft the full markdown for `train`.\n\n### For `review` — draft findings report\n\nProduce a structured gap report. For each finding: adapter title, gap type (from the review checklist), severity (high/medium/low), recommended fix (specific: which layer to add, which `activate` call to insert, which adapter reference to update). Save to `$KAIROS_WORK_DIR/protocol-review-findings.md`.\n\n### For `fix` — draft corrected adapter markdown\n\nExport the current adapter via `export`. Apply the identified fix to the markdown. Show a diff-style summary of what changed (layers added, references updated, contracts modified).\n\n### Shared drafting rules (all operations)\n\n**DRY — Don't Repeat Yourself:**\n\nEvery piece of knowledge must live in exactly one place in the protocol family. Before writing any content, ask: \"Does this already exist in another protocol, a shared reference, or CLAUDE.md?\"\n\n- Boilerplate (auth handling, assignment workflow, error tables, validation checklists) belongs **inside the step that needs it** — one sentence, not a section. If it's identical across a protocol family, extract it to a shared reference file and load it via `activate(query: \"...\")` or a stored adapter URI.\n- If two protocols share >50% of their body, extract the shared logic into a base protocol or reference.\n- Every H2 must earn its place: if it has no challenge, it's not a step — fold its content into a step that does.\n- Never duplicate an H2 heading within a file. KAIROS treats each H2 as a step — duplicates create phantom steps.\n\n**350-line maximum per file:**\n\nNo protocol file may exceed 350 lines. Both humans and AI lose coherence on longer documents.\n\n- If a protocol grows beyond 350 lines, **split it** — use an `mcp` challenge with `activate` or a stored adapter URI to link the continuation adapter, or extract domain-specific content into a reference/checklist file.\n- Router protocols are naturally short (~50–80 lines). Extension protocols should target 100–200 lines.\n- Type extensions and reference files (not full protocols) should stay under 150 lines.\n- Measure after drafting: `wc -l <file>`. If over 350, refactor before training.\n\n**Generic-first — create generic, link from detailed:**\n\nCreate protocols from generic to detailed. The generic adapter comes first and must stand alone — it works even with zero extensions. Specializations (type checklists, domain extensions) are created second and link *back* to the generic via `activate(query: \"...\")` or a stored adapter URI.\n\n- The generic protocol defines the workflow scaffold. The extension defines only what's different.\n- Teaching is showing the difference: an extension that only contains the delta is easier to read, write, and maintain than a full copy with scattered overrides.\n- Expansion is cheap — adding a new type means one new extension file. The generic adapters don't change. Zero regression risk on existing paths.\n\n**Slug convention — deterministic protocol linking:**\n\nEvery protocol gets a `slug` — a short, unique, lowercase-hyphenated key for export, offline migration, and repo bookkeeping. Runtime linking uses `activate` or a stored adapter URI. The engine auto-generates the slug from the H1 title. Add explicit `slug:` frontmatter only when the auto-generated value is too long or ambiguous.\n\n```yaml\n---\nslug: jira-markdown-formatting\n---\n# Jira Description Markdown Formatting via MCP\n```\n\n**When to use stored adapter URIs vs. activate:**\n\n- `forward` with a stored `kairos://adapter/{uuid}` URI — deterministic adapter-to-adapter routing. Use when the author or runtime already knows the target URI.\n- `activate` — user discovery and runtime type-dispatch when the target depends on the request text or only the adapter title is known at author time.\n\n**Slug naming rules:**\n\n1. **Families (router + extensions):** hierarchical. The router slug is the family prefix. Each child expands the parent by one hyphenated segment per routing level:\n   - `jira` → `jira-bib` → `jira-bib-bug`\n   - `compose` → `compose-email`\n   - `standardize` → `standardize-analyze`\n   - An agent can derive the parent slug by stripping the last segment. This enables mechanical traversal without search.\n\n2. **Standalone protocols (no family):** action-oriented. Describe what the protocol does, not where it lives. The bundle directory is the namespace — the slug does not repeat it.\n   - Good: `create-merge-request`, `makefile-setup`, `migrate-tf-to-git-sha`\n   - Bad: `gitlab-create-merge-request` (redundant — it's already in `gitlab/`)\n\n3. **Shared utilities:** prefix with the family they serve, at the family root level:\n   - `jira-markdown-formatting` (used by all `jira-*` children)\n   - `jira-alternative-mcp-unavailable`\n\n4. **General rules:**\n   - Lowercase, hyphen-separated. No underscores, no camelCase.\n   - Short as possible while remaining unambiguous. Target 2–4 segments.\n  - The slug is a durable bookkeeping key. Activation Patterns and adapter URIs handle runtime discoverability and routing.\n\n**Protocol structure rules:**\n\n- H1: protocol title (one H1 = one adapter)\n- First H2: Activation Patterns\n- Middle H2s: one per step, each ending with a ```json challenge block\n- Last H2: Reward Signal\n\n**Activation Patterns structure (required, exact order):**\n\n1. Trigger phrases — 3–6 quoted phrases\n2. Trigger pattern — verb + noun formula\n3. Must Never — 1–3 cases (imperative, no \"should\")\n4. Must Always — 1–3 mandatory behaviours\n5. Good trigger examples — 2–3 with `→ run this protocol`\n6. Bad trigger examples — 2–3 with `→ use X instead`\n\n**Challenge types:**\n\n| Type | Use for | Engine validates |\n|---|---|---|\n| `comment` | Agent extracts, analyzes, drafts, summarizes | min_length |\n| `user_input` | Human confirms, approves, chooses | Non-empty response |\n| `mcp` | Agent must call a specific tool | Tool called successfully |\n| `shell` | Agent must run a command | Exit code 0 |\n\n**Challenge JSON format** (place at end of each step). Use a **single** concrete `type` per step (`comment`, `user_input`, `mcp`, or `shell`). Do not use pipe-separated placeholders inside `type` — each ` ```json ` block with `{\"contract\":...}` becomes its own layer when stored via **`train`**.\n\n```text\n{\n  \"contract\": {\n    \"type\": \"comment\",\n    \"comment\": { \"min_length\": 50 },\n    \"required\": true\n  }\n}\n```\n\n**Router-specific steps:**\n\n- Classify step: decision tree table, forbidden types, common misclassifications. Challenge: `user_input`.\n- Route step: `activate(query: \"<exact adapter title>\")` per type, fallback field reference. Challenge: `mcp` with `tool_name: \"activate\"`.\n\n**If Router pattern:** draft the router AND each extension as separate markdown files.\n\nPost the full drafted markdown.\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":100},\"required\":true}}\n```\n\n## User Review\n\nFor `create`: present the drafted protocol(s) to the user. Ask to approve, request changes, or cancel. If Router pattern, present all files (router + extensions).\n\nFor `review`: present the findings report. Ask user which findings to act on (fix now, defer, dismiss). If any findings are accepted for fix, switch `{operation}` to `fix` and proceed to Train adapter for each.\n\nFor `fix`: present the corrected adapter markdown with a summary of changes. Ask to approve the fix or request adjustments.\n\n```json\n{\"contract\":{\"type\":\"user_input\",\"user_input\":{\"prompt\":\"Approve the draft (create/fix) or acknowledge findings (review)\"},\"required\":true}}\n```\n\n## Train adapter\n\nFor `create`: call `train` with the approved markdown. Use `force_update: false` unless the user explicitly asks to overwrite. If Router pattern: train the router first, then each extension.\n\nFor `review`: no `train` call. Save the findings report to the repo under `reports/` if the user requests it. Protocol complete.\n\nFor `fix`: call `train` with the corrected markdown and `force_update: true`. Also update the corresponding repo file under `kairos-v4/bundles/` to keep the local copy in sync.\n\nReport the outcome: adapter URI(s) for create/fix, or findings summary for review.\n\n```json\n{\"contract\":{\"type\":\"mcp\",\"mcp\":{\"tool_name\":\"train\"},\"required\":true}}\n```\n\n## Reward Signal\n\nProtocol complete when: `create` — adapter(s) stored via **`train`** and URI(s) reported. `review` — findings report delivered and acknowledged. `fix` — corrected adapter trained with `force_update: true` and repo file updated.\n",
-        "refine-search": "---\nversion: \"4.0.0\"\nslug: refine-search\ntitle: Get help refining your search\n---\n\n# Get help refining your search\n\n**You are an AI agent.** You ran **`activate`** and got no solid match (or only weak/ambiguous ones). This adapter helps you turn the user's vague request into a better query so the next **`activate`** can find the right adapter.\n\n## Activation Patterns\n\n**Run this adapter when:**\n\n- **activate** returned no match, or only choices with low **activation_score** (e.g. all &lt; 0.5).\n- The response included a **refine** choice directing you to improve the query.\n\n**Trigger pattern:** After **activate** when result is no strong match / refine suggested.\n\n**Must Never:**\n\n- Run when a strong match (score ≥ 0.5) already exists — use that choice and **forward** instead.\n- Run when the user has not yet asked for anything (no prior activation context).\n\n**Must Always:**\n\n- Run at most once per user request — if refining twice still yields no match, stop and offer **train** or ask the user to clarify.\n\n**Good trigger examples:**\n\n- **activate** returned only \"refine\" / weak matches → run this adapter\n- \"No protocol matched 'do the thing'\" → run this adapter\n\n**Bad trigger examples:**\n\n- **activate** returned a strong match → use that match, not this adapter\n- User asked \"what adapters exist?\" → use **activate**/**spaces**, not this adapter\n\n## Step 1: Extract what the user actually wants\n\nFrom the user's original message, identify goal, context, and gaps.\n\nWrite your analysis as your solution (goal + context + gaps, minimum 30 characters).\n\n```json\n{\n  \"contract\": {\n    \"type\": \"comment\",\n    \"comment\": { \"min_length\": 30 },\n    \"required\": true\n  }\n}\n```\n\n## Step 2: Build and run a refined activate query\n\nUsing your Step 1 analysis, construct a single query (3–8 specific words). Do not reuse the vague phrase that already failed.\n\nCall **`activate`** with it.\n\n- **Strong match (score >= 0.5):** Pick that choice and **forward** with its adapter URI.\n- **Weak matches only:** Ask the user to clarify, or pick the create choice to **train** a new adapter.\n\nDo not loop more than once — if two activations fail, the adapter likely does not exist yet.\n\n```json\n{\n  \"contract\": {\n    \"type\": \"mcp\",\n    \"mcp\": { \"tool_name\": \"activate\" },\n    \"required\": true\n  }\n}\n```\n\n## Reward Signal\n\nOnly reachable after all prior layers are satisfied.\n",
-        "create-new-protocol-review": "---\nversion: \"4.0.0\"\nslug: create-new-protocol-review\ntitle: Review and Publish New KAIROS Protocol\n---\n\n# Review and Publish New KAIROS Protocol\n\nValidate a drafted KAIROS protocol through format review, stranger review, user approval, and train. Invoked by the authoring adapter (`create-new-protocol`) or directly to re-review an existing draft.\n\n## Activation Patterns\n\n**Typically invoked by:** the authoring adapter's handoff step via `activate(query: \"Review and Publish New KAIROS Protocol\")` or a stored adapter URI.\n\n**Can be invoked directly when user says:**\n\n- \"review my protocol draft\" / \"validate this protocol\"\n- \"re-run format review on my draft\"\n- \"train my protocol\" / \"register my adapter\" (when a draft already exists)\n\n**Trigger pattern:** **review** / **validate** / **train** + (protocol / draft).\n\n**Must Never:**\n- Run without `$KAIROS_WORK_DIR` set and containing `draft-protocol.md`.\n- Skip format or stranger review steps.\n\n**Must Always:**\n- Verify `$KAIROS_WORK_DIR` and draft file exist before proceeding.\n- Require both reviews to pass before presenting to user.\n- Freeze the draft checksum after reviews pass and verify it before **`train`**.\n- Clean up `$KAIROS_WORK_DIR` after training (or on cancellation).\n\n**Good trigger examples:**\n- Handoff from `create-new-protocol` → run this protocol\n- \"Review and train my protocol draft\" → run this protocol\n\n**Bad trigger examples:**\n- \"Create a new protocol\" → use `create-new-protocol`, not this\n- \"Search for a protocol\" → use `activate`, not this\n\n---\n\n## Prerequisites\n\nThis protocol requires `$KAIROS_WORK_DIR` from the authoring adapter (engine-provided, persists across linked adapters):\n\n- `$KAIROS_WORK_DIR/draft-protocol.md` — the drafted protocol file\n- `$KAIROS_WORK_DIR/requirements.md` — requirements summary (optional, for context)\n\n**If invoked directly** (no authoring adapter), the engine creates `$KAIROS_WORK_DIR` when this adapter starts. Copy the draft file there before proceeding.\n\n**Security:** Do NOT write credentials, tokens, or secrets into any file in `$KAIROS_WORK_DIR`.\n\n---\n\n## Format Review [SUBAGENT]\n\nDelegate format verification to a subagent. The subagent writes its verdict to `$KAIROS_WORK_DIR/format-review.md`.\n\n**Input:** `$KAIROS_WORK_DIR/draft-protocol.md`.\n\n**Subagent task:**\n\n1. Read `$KAIROS_WORK_DIR/draft-protocol.md`.\n2. Verify protocol structure compliance:\n   - H1 present (exactly one)\n   - First H2 is Natural Language Triggers (with all 6 subsections: trigger phrases, trigger pattern, Must Never, Must Always, good examples, bad examples)\n   - Last H2 is Completion Rule\n   - Every middle H2 has a challenge block\n   - No duplicate H2 headings\n3. Verify subagent eligibility per step:\n   - Every H2 step has `[SUBAGENT]` tag\n   - Every step has explicit `**Input:**`, `**Actions:**`, `**Output:**`\n   - Actions are numbered and imperative\n4. Verify challenge type selection (per `activate(query: \"Challenge Type Selection Guide\")`):\n   - No `comment` challenges on steps that produce files, call tools, or check system state\n   - `shell` challenges use compound `&&` chains (not `;`)\n   - `shell` challenges include `timeout_seconds`\n5. Verify interpreter selection:\n   - Flag bash challenges containing `while read`, `grep | awk`, or escaped quotes deeper than one level — suggest Perl rewrite\n   - Multi-line regex validation MUST use `perl -0777` (not bash `grep`)\n   - JSON block validation MUST use `perl -MJSON` or `python3 -c 'import json'` (not bash pattern matching)\n   - Simple file tests (`test -f`, `which`, `git status`) stay bash\n6. Verify DRY compliance:\n   - No duplicated content across files (if Router pattern)\n   - No boilerplate sections — shared content extracted or inlined\n7. Verify 350-line limit:\n   - Count lines. If over 350, list which sections to split or extract.\n8. Verify slug convention:\n   - Slug present in frontmatter\n   - Follows naming rules (lowercase, hyphenated, 2–4 segments)\n   - If Router: children expand parent slug by one segment\n9. Write verdict to `$KAIROS_WORK_DIR/format-review.md`. First line MUST be `PASS` or `FAIL`. Remaining lines: list of specific fixes if FAIL.\n\n**Output:** `$KAIROS_WORK_DIR/format-review.md` with verdict on first line.\n\n**If fail:** Main agent applies fixes to the draft and re-runs this step until pass.\n\n```json\n{\"contract\":{\"type\":\"shell\",\"shell\":{\"cmd\":\"test -f \\\"$KAIROS_WORK_DIR/format-review.md\\\" && head -1 \\\"$KAIROS_WORK_DIR/format-review.md\\\" | grep -qi 'pass'\",\"timeout_seconds\":5},\"required\":true}}\n```\n\n## Stranger Review [SUBAGENT]\n\nDelegate executability review to a subagent with junior AI agent persona. The subagent writes its verdict to `$KAIROS_WORK_DIR/stranger-review.md`.\n\n**Input:** `$KAIROS_WORK_DIR/draft-protocol.md` (post format-review fixes).\n\n**Subagent task:**\n\n1. Assume persona: Junior AI agent, first time encountering KAIROS protocols.\n2. **Mocked dry-run (most important):** Walk through every step in order and produce a mocked but **structurally correct** challenge response. If a mock is wrong, the protocol is ambiguous.\n   - **`mcp` challenges:** Return valid MCP tool-call JSON with correct `tool_name`, plausible `arguments`, and realistic `result` envelope. No placeholder strings.\n   - **`shell` challenges:** Write the exact command. If non-destructive, show expected stdout/stderr and exit code. Destructive: show command only.\n   - **`user_input` challenges:** Write a realistic user response matching all constraints. If choice implied, pick one and justify.\n   - **`comment` challenges:** Write a realistic agent comment meeting `min_length`, covering the step's stated output, no filler.\n3. **Clarity checks** (alongside dry-run):\n   - **Executability test:** Can I follow step-by-step without guessing? (yes/no + explanation)\n   - **Ambiguity check:** Vague terms like \"appropriate\", \"reasonable\", \"as needed\"? (list every instance)\n   - **Missing context:** Steps referencing undefined variables or concepts? (list them)\n   - **Missing examples:** Complex rules without examples? (list them)\n4. Write verdict to `$KAIROS_WORK_DIR/stranger-review.md`. First line MUST be `PASS` or `FAIL`. Remaining lines: mocked dry-run responses and clarity check results. If FAIL, include specific gaps with the failing mock inline.\n\n**Output:** `$KAIROS_WORK_DIR/stranger-review.md` with verdict on first line and full dry-run.\n\n**If fail:** Main agent revises draft — replace vague terms, add examples, define missing variables, fix steps whose mock drifted from intent. Re-run until pass.\n\n```json\n{\"contract\":{\"type\":\"shell\",\"shell\":{\"cmd\":\"test -f \\\"$KAIROS_WORK_DIR/stranger-review.md\\\" && head -1 \\\"$KAIROS_WORK_DIR/stranger-review.md\\\" | grep -qi 'pass'\",\"timeout_seconds\":5},\"required\":true}}\n```\n\n## Checksum Freeze [SUBAGENT]\n\nFreeze the draft after both reviews pass. Prevents accidental edits between \"reviews passed\" and \"user approved\".\n\n**Input:** `$KAIROS_WORK_DIR/draft-protocol.md` (post both reviews).\n\n**Actions:**\n1. Compute md5 checksum of the draft file.\n2. Write checksum to `$KAIROS_WORK_DIR/draft-protocol.md.md5`.\n\n**Output:** `$KAIROS_WORK_DIR/draft-protocol.md.md5` containing the frozen checksum.\n\n```json\n{\"contract\":{\"type\":\"shell\",\"shell\":{\"cmd\":\"md5 -q \\\"$KAIROS_WORK_DIR/draft-protocol.md\\\" > \\\"$KAIROS_WORK_DIR/draft-protocol.md.md5\\\" && test -s \\\"$KAIROS_WORK_DIR/draft-protocol.md.md5\\\"\",\"timeout_seconds\":5},\"required\":true}}\n```\n\n## User Review [SUBAGENT]\n\nPresent the drafted and reviewed protocol to the user for final approval.\n\n**Input:** `$KAIROS_WORK_DIR/draft-protocol.md`, `$KAIROS_WORK_DIR/format-review.md`, `$KAIROS_WORK_DIR/stranger-review.md`.\n\n**Actions:**\n1. Present full protocol markdown (or all files if Router pattern).\n2. Summarize: pattern used, step count, challenge types, slug(s), both review verdicts.\n3. Ask: \"Type 'approved' to train (register the adapter), describe what needs adjustment, or 'cancel'.\"\n\n**Output:** User approval, change requests, or cancellation.\n\n```json\n{\"contract\":{\"type\":\"user_input\",\"user_input\":{\"prompt\":\"Review the protocol draft above. Type 'approved' to run train (register the adapter), describe adjustments, or 'cancel'.\"},\"required\":true}}\n```\n\n## Train adapter [SUBAGENT]\n\nVerify the draft is unchanged since checksum freeze, then call `train`.\n\n**Input:** Approved `$KAIROS_WORK_DIR/draft-protocol.md`, slug from frontmatter.\n\n**Actions:**\n1. Verify draft unchanged: `md5 -q \"$KAIROS_WORK_DIR/draft-protocol.md\" | diff - \"$KAIROS_WORK_DIR/draft-protocol.md.md5\"`. If diff fails, warn user and abort.\n2. Call `train` with `force_update: false` (unless user explicitly asked to overwrite).\n3. If Router pattern: train the router first, then each extension in order.\n4. Verify each **`train`** call succeeded by checking the returned URI.\n5. Report the adapter URI(s) back to the user with clickable links.\n\n**Output:** Confirmation with stored adapter URI(s) and slug(s).\n\n```json\n{\"contract\":{\"type\":\"mcp\",\"mcp\":{\"tool_name\":\"train\"},\"required\":true}}\n```\n\n## Reward Signal\n\nOnly reachable after all prior steps are solved.\n\n**Cleanup:** `$KAIROS_WORK_DIR` is cleaned up by the engine at `reward`.\n\nThe user now has a trained (registered) KAIROS adapter that:\n1. Passed Format Review — structure, DRY, 350-line limit, slug convention, challenge type selection.\n2. Passed Stranger Review — mocked dry-run with structurally correct challenge responses, unambiguous, executable by a junior AI agent.\n3. Checksum verified — draft unchanged between review pass and **`train`**.\n4. User approved the final draft.\n5. Successfully stored via **`train`** and discoverable via `activate`.\n",
-        "challenge-type-guide": "---\nversion: \"4.0.0\"\nslug: challenge-type-guide\ntitle: Challenge Type Selection Guide\n---\n\n# Challenge Type Selection Guide\n\nDecision rules, JSON formats, interpreter selection, and anti-patterns for choosing KAIROS challenge types. Loaded by protocol-authoring agents during drafting and review.\n\n## Activation Patterns\n\n**Typically invoked by:** `create-new-protocol` (authoring adapter) Draft Markdown step and `create-new-protocol-review` (review adapter) Format Review step via `activate(query: \"Challenge Type Selection Guide\")` or a stored adapter URI.\n\n**Can be invoked directly when agent needs:**\n\n- \"challenge type reference\" / \"which challenge type to use\"\n- \"how to write shell challenges\" / \"challenge format\"\n- \"interpreter selection for challenges\"\n\n**Trigger pattern:** **challenge** + (type | format | selection | guide).\n\n**Must Never:**\n- Be used as an execution protocol — this is a reference policy, not a workflow.\n\n**Must Always:**\n- Be consulted before assigning challenge types to protocol steps.\n\n**Good trigger examples:**\n- Drafting a new protocol and need challenge types → load this\n- Reviewing challenge type selection in a draft → load this\n\n**Bad trigger examples:**\n- \"Create a new protocol\" → use `create-new-protocol`\n- \"Review my protocol draft\" → use `create-new-protocol-review`\n\n---\n\n## Core Rules\n\n`comment` is the challenge type of **last resort**. If a step produces any observable artifact — a file, a git state change, an API response, a process exit code — use `shell` or `mcp` instead.\n\n### Decision Tree\n\n```\nDoes the step batch multiple TODO items into a phase?\n ├─ YES → Pattern B: Phase step (shell gate on hard artifacts) + phase-critic review step\n └─ NO → Does the step call an MCP tool?\n          ├─ YES → \"mcp\" with tool_name\n          └─ NO → Does the step produce or modify a file?\n                   ├─ YES → \"shell\" to verify the file\n                   └─ NO → Does the step require human approval or choice?\n                            ├─ YES → \"user_input\" with a specific prompt\n                            └─ NO → Does the step run a command or check system state?\n                                     ├─ YES → \"shell\"\n                                     └─ NO → \"comment\" (pure reasoning, no artifact)\n```\n\n**When to use Pattern A (fine-grained steps) vs Pattern B (phase+TODO+critic):**\n\n| Pattern A: Fine-grained | Pattern B: Phase+Critic |\n|--------------------------|-------------------------|\n| Simple, linear protocols | Complex multi-step workflows |\n| Each step is independently verifiable | Individual step challenges would be trivially satisfiable |\n| Few steps (3-5) | Many steps that can batch (6+) |\n| Single MCP call or file operation per step | Multiple related operations per phase |\n| Jira creation, policy lookups, single tool calls | Implement, Standardize, Compose workflows |\n\n### Challenge JSON Formats\n\n**shell** — engine runs command, checks exit code 0:\n\n\n> ```json\n> {\"contract\":{\"type\":\"shell\",\"shell\":{\"cmd\":\"<command>\",\"timeout_seconds\":30},\"required\":true}}\n> ```\n\n**mcp** — engine confirms named MCP tool was invoked:\n\n> ```json\n> {\"contract\":{\"type\":\"mcp\",\"mcp\":{\"tool_name\":\"<tool>\"},\"required\":true}}\n> ```\n\nWith pinned arguments:\n\n> ```json\n> {\"contract\":{\"type\":\"mcp\",\"mcp\":{\"tool_name\":\"activate\",\"arguments\":{\"query\":\"some adapter title\"}},\"required\":true}}\n> ```\n\n**user_input** — engine confirms user provided non-empty response:\n\n> ```json\n> {\"contract\":{\"type\":\"user_input\",\"user_input\":{\"prompt\":\"<specific question>\"},\"required\":true}}\n> ```\n\n**comment** — engine checks min_length only (last resort):\n\n> ```json\n> {\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":50},\"required\":true}}\n> ```\n\n### Shell Challenge Rules\n\n- Chain checks with `&&` (not `;`) — first failure short-circuits.\n- Always set `timeout_seconds`: 5s for local checks, 30–120s for network/build.\n- All file paths MUST use `$KAIROS_WORK_DIR/` prefix (never hardcoded `/tmp/`).\n- Use `test -f` for existence, `grep -q` for content, `wc -l | awk` for line counts.\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":30},\"required\":true}}\n```\n\n---\n\n## Interpreter Selection\n\nFor text validation, regex, and structural checks, **Perl is often shorter, clearer, and more correct** than bash.\n\n| Task | Use bash | Use perl | Use python3 |\n|---|---|---|---|\n| File exists, tool installed, git state | `test -f`, `which`, `git status` | -- | -- |\n| Simple content grep | `grep -q 'pattern' file` | -- | -- |\n| Multi-line regex | -- | `perl -0777 -ne '/pat/ms or die'` | -- |\n| Count + assert (headings, sections) | `grep -c \\| awk` (fragile) | `perl -0777 -ne '@m=/pat/g; die if @m<N'` | -- |\n| Paragraph processing (commits, blocks) | `while read` loop (messy) | `perl -00 -ne '...'` | -- |\n| JSON validation | `python3 -m json.tool` | `perl -MJSON -e 'decode_json(do{local$/;<>})'` | `python3 -c 'import json; ...'` |\n| YAML validation | -- | -- | `python3 -c 'import yaml; ...'` |\n| Complex data structure checks | -- | -- | `python3 -c 'import json; d=json.load(...); assert ...'` |\n\n**Rule of thumb:** If you're writing `grep | awk`, `while read`, nested escaping, or multi-line patterns in bash — rewrite in Perl. If you need `import` for a data format (YAML, TOML) — use Python.\n\n### Perl Flags Cheat Sheet\n\n| Flag | Effect | Use case |\n|---|---|---|\n| `-e '...'` | Execute code | Every Perl challenge |\n| `-n` | Implicit `while(<>)` loop, no auto-print | Process lines, filter |\n| `-p` | Like `-n` but auto-prints `$_` | Transform-and-verify |\n| `-l` | Auto-chomp + auto-newline | Clean line processing |\n| `-a` | Auto-split into `@F` (like awk) | Field extraction |\n| `-0777` | Slurp entire file as one string | Multi-line regex |\n| `-00` | Paragraph mode (split on blank lines) | Commit messages, markdown blocks |\n| `-MJSON` | Load core JSON module | JSON validation without Python |\n\n### Bash vs Perl Examples\n\n**Count H2 headings and verify required sections:**\n\nbash (fragile):\n\n> Example:\n> ```bash\n> grep -c '^## ' \"$D\" | awk '$1 >= 3' && grep -q '^## Natural Language Triggers' \"$D\" && grep -q '^## Completion Rule' \"$D\"\n> ```\n\nperl (one pass, clear logic):\n\n> Example:\n> ```bash\n> perl -0777 -ne '@h=/^## (.+)/mg; die \"Need >=3 H2s\" if @h<3; grep(/^Natural Language Triggers$/,@h) or die \"Missing NLT\"; grep(/^Completion Rule$/,@h) or die \"Missing CR\"' \"$D\"\n> ```\n\n**Validate JSON challenge blocks:**\n\nperl (core JSON module):\n\n> Example:\n> ```bash\n> perl -MJSON -0777 -ne '@b=/```json\\s*\\n(\\{.*?\\})\\s*\\n```/gs; die \"No blocks\" unless @b; eval{decode_json($_)} or die \"Bad JSON: $@\" for @b; print scalar(@b).\" valid\\n\"' \"$D\"\n> ```\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":30},\"required\":true}}\n```\n\n---\n\n## Anti-Patterns\n\n| Anti-Pattern | Why It Fails | Fix |\n|---|---|---|\n| `comment` with `min_length: 20` | Trivially satisfiable with filler | Raise to 50+, or switch to `shell` if artifact exists |\n| `comment` for steps that run commands | Says \"run X\" but only checks agent wrote words | Use `shell` with the actual command |\n| `comment` for steps that call MCP tools | Says \"call tool Y\" but only checks text output | Use `mcp` with `tool_name` |\n| `shell` without `timeout_seconds` | May hang indefinitely | Always set timeout |\n| `user_input` with generic prompt \"Confirm\" | User doesn't know what they're confirming | Write a specific question |\n| `shell` with `echo 'placeholder'` | Always passes, proves nothing | Replace with real verification command |\n| Checks chained with `;` instead of `&&` | Later checks run even if earlier ones fail | Use `&&` for short-circuit |\n| Hardcoded `/tmp/` paths | Concurrent runs collide; world-readable on Linux | Use `$KAIROS_WORK_DIR` |\n| bash `while read \\| grep \\| awk` chains | Fragile, escaping nightmare, non-portable | Rewrite in Perl |\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":30},\"required\":true}}\n```\n\n---\n\n## Security and Concurrency\n\n### Session-Scoped Working Directory\n\nNever use hardcoded `/tmp/` paths. Use a session-scoped, user-private working directory:\n\n> Example:\n> ```bash\n> export KAIROS_WORK_DIR=$(mktemp -d \"${XDG_RUNTIME_DIR:-${TMPDIR:-/tmp}}/kairos-XXXXXX\")\n> chmod 700 \"$KAIROS_WORK_DIR\"\n> ```\n\n**Priority chain:** `XDG_RUNTIME_DIR` (preferred, per-user, `0700` by spec) → `TMPDIR` (macOS fallback) → `/tmp` (last resort, `chmod 700`).\n\n**Why:** Concurrent chat sessions running the same protocol would collide on hardcoded paths. `mktemp -d` guarantees isolation. Completion Rule MUST `rm -rf \"$KAIROS_WORK_DIR\"`.\n\n**Rules:** All file paths in shell challenges use `$KAIROS_WORK_DIR/` prefix. Prerequisites section creates it. Completion Rule cleans it up. Never write credentials or secrets to files.\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":30},\"required\":true}}\n```\n\n---\n\n## Composition Patterns\n\n**Multi-check compound command** — chain with `&&`, first failure short-circuits:\n\n> Example:\n> ```bash\n> test -f <file> && grep -q '<required>' <file> && wc -l < <file> | awk '$1 <= 350'\n> ```\n\n**Freeze-then-verify** — two consecutive steps:\n- Step N (after review): `md5 -q <file> > \"$KAIROS_WORK_DIR/<file>.md5\"`\n- Step N+1 (before publish): `md5 -q <file> | diff - \"$KAIROS_WORK_DIR/<file>.md5\"`\n\n**Write-then-grep** — subagent delegation:\n- Subagent instruction: \"Write verdict to `$KAIROS_WORK_DIR/<name>.md`. First line: `PASS` or `FAIL`.\"\n- Main agent challenge: `head -1 \"$KAIROS_WORK_DIR/<name>.md\" | grep -qi 'pass'`\n\n**Phase-batch with critic** — batch TODO items into a phase, then start the\n`phase-critic` meta-protocol via `forward` with the stored adapter URI\n`kairos://adapter/00000000-0000-0000-0000-000000002005` to adversarially\nvalidate all outputs at once:\n- Phase step: agent executes N TODO items using `TodoWrite` to track progress. Shell challenge verifies hard artifacts (files exist, branch created, etc.).\n- Critic step: fire `phase-critic` with reference document + calling protocol slug + verdict file path. Critic extracts claims under the extraction contract, investigates with scope discipline using the evidence hierarchy, and writes verdict to `$KAIROS_WORK_DIR/critic-<phase>.md`. First line: `PASS` or `FAIL`. Second line: confidence level.\n- Main agent challenge: `head -1 \"$KAIROS_WORK_DIR/critic-<phase>.md\" | grep -qi '^pass'`\n- On FAIL: auto-retry 1x (re-execute failed TODOs, re-fire critic as fresh run). 2nd FAIL escalates to user with failure class and diagnostic artifacts.\n- Use when: multiple steps can execute as a batch and individual step challenges would be trivially satisfiable. The critic provides stronger validation than per-step checks because it reviews holistically, applies the evidence hierarchy, and searches for contradictions.\n- Trade-off: less granular failure isolation — if the critic fails, the failure class and blocking issues guide diagnosis.\n- See `phase-critic` meta-protocol (slug: `phase-critic`) for full audit contract, verdict semantics, and evidence hierarchy.\n\n**Dry-run before execution** — three steps:\n- Step N: `<tool> --dry-run` (shell challenge)\n- Step N+1: `user_input` (human reviews output)\n- Step N+2: `<tool> --yes` (shell challenge)\n\n```json\n{\"challenge\":{\"type\":\"comment\",\"comment\":{\"min_length\":30},\"required\":true}}\n```\n\n## Reward Signal\n\nOnly reachable after all prior steps are solved.\n\nThe agent has loaded the challenge type selection guide and can now:\n1. Pick the correct challenge type for each protocol step using the decision tree.\n2. Write valid challenge JSON in the correct format.\n3. Choose the right interpreter (bash / perl / python3) for shell challenges.\n4. Avoid all listed anti-patterns.\n5. Apply security and concurrency rules (`$KAIROS_WORK_DIR`).\n6. Use composition patterns for multi-check, freeze-verify, and subagent delegation.\n",
-        "phase-critic": "---\nversion: \"4.0.0\"\nslug: phase-critic\ntitle: Phase Critic\n---\n\n# Phase Critic\n\nBounded adversarial investigator fired as a subagent at phase boundaries. Receives a reference document, loads the calling protocol's invariants, and independently verifies the verification target by extracting claims, gathering evidence, and searching for contradictions.\n\n## Natural Language Triggers\n\n**Typically invoked by:** Any non-meta protocol at the end of Phase 1\n(Plan) or Phase 2 (Implement) via `forward` with the stored adapter URI\n`kairos://adapter/00000000-0000-0000-0000-000000002005`.\n\n**Can be invoked directly when agent needs:**\n\n- \"review phase output\" / \"verify plan\" / \"audit implementation\"\n- \"adversarial review\" / \"critic review\"\n\n**Trigger pattern:** **review** / **verify** / **audit** / **critic** + (phase / plan / implementation / output).\n\n**Must Never:**\n\n- Modify any file, branch, or configuration outside `$KAIROS_WORK_DIR`. This is forensic validation, not execution.\n- Trust the executor's assertions — verify independently from artifacts and current state.\n- Classify a claim as `verified` based solely on failure to find contradiction. Positive supporting evidence is required.\n- Accept \"probably correct\" or indirect inference as sufficient evidence for a `verified` verdict on high-risk claims.\n- Rely on hidden prior reasoning state. Each run is stateless — reason only from artifacts and context available now.\n- Continue deep verification after a Precondition Check early-abort trigger is\n  detected.\n\n**Must Always:**\n\n- Extract claims under the defined extraction contract before investigating.\n- Verify all in-scope claims before expanding investigation.\n- Apply the evidence hierarchy — higher-priority evidence overrides lower.\n- Search for contradictory evidence, not just confirmatory evidence.\n- Include a confidence level (High / Medium / Low) in every verdict.\n- Include a failure class in every FAIL verdict.\n- Produce diagnostic artifacts on FAIL.\n\n**Good trigger examples:**\n\n- Implement protocol fires this after Phase 1 to validate the plan → run this protocol\n- Compose protocol fires this after Phase 2 to verify the page was written correctly → run this protocol\n\n**Bad trigger examples:**\n\n- \"Create a new protocol\" → use `create-new-protocol`, not this\n- \"Implement a feature\" → use `implement`, not this\n\n---\n\n## Artifact Contract\n\nThis protocol receives:\n\n```\n{\n  reference_document: string (required) — path or content of the specification to verify against\n  calling_protocol_slug: string (required) — slug of the calling protocol (to load Must Never / Must Always invariants)\n  verification_target: string (required) — what to verify: \"plan\" | \"codebase\" | \"output\" | description of target\n  context: {\n    operation: string (optional) — e.g. \"create\" | \"fix\" | \"review\" | \"update\"\n    work_dir: string (required) — $KAIROS_WORK_DIR path\n    verdict_file: string (required) — filename for verdict output (e.g. \"plan-review.md\" or \"impl-review.md\")\n  }\n}\n```\n\nThis protocol produces:\n\n```\n{\n  verdict: \"PASS\" | \"FAIL\"\n  confidence: \"High\" | \"Medium\" | \"Low\"\n  failure_class: string (only on FAIL) — one of: plan_incomplete, implementation_incorrect, evidence_missing, contradiction_detected, external_dependency_failure, verification_blocked\n  verdict_file: \"$KAIROS_WORK_DIR/{verdict_file}\" — structured audit report (agent mode) or conversational output (plan mode)\n}\n```\n\n---\n\n## Precondition Check [SUBAGENT]\n\nVerify foundational preconditions before deep investigation. Early-abort if any are broken.\n\n**Input:** `{reference_document}`, `{calling_protocol_slug}`, `{context}`.\n\n**Actions:**\n\n1. Verify the reference document exists and is readable. If missing or empty → early-abort.\n2. Verify `$KAIROS_WORK_DIR` exists. If missing → early-abort.\n3. Load the calling protocol's Must Never / Must Always sections via `{calling_protocol_slug}`. If protocol not found → warn but continue (invariants will be empty).\n4. For Phase 2 reviews: verify the verification target is available (branch exists, files changed, output artifacts present). If the target state is fundamentally wrong (wrong branch, no changes when changes required) → early-abort.\n5. Check that tools needed for verification are available (git, relevant MCP servers). If a required tool is unavailable and blocks verification → early-abort.\n\n**On early-abort:**\n\n- Set verdict to `FAIL`\n- Set failure class to `verification_blocked`\n- Set confidence to `Low`\n- Write focused diagnostics explaining the precondition failure\n- Skip all subsequent steps — do not attempt claim verification\n\n**Output:** Preconditions verified, or early-abort with diagnostics.\n\n```json\n{\"challenge\":{\"type\":\"comment\",\"comment\":{\"min_length\":50},\"required\":true}}\n```\n\n## Audit [SUBAGENT]\n\nPerform bounded adversarial review of the verification target against the reference document and invariants.\n\n**Input:** Reference document content, invariants (Must Never / Must Always), verification target access, `{context}`.\n\n**Actions:**\n\n**Step 1 — Extract claims under the extraction contract:**\n\nFrom the reference document and invariants, extract every verifiable claim. Prioritise extraction as follows:\n\nMUST extract and verify:\n- Operational claims (steps, procedures, workflows)\n- Actionable instructions (commands, API calls, tool invocations)\n- Configuration and environment variable claims\n- Architecture claims that imply behaviour\n- Guarantees and constraints\n- Deploy/runtime assumptions\n- Security, auth, and permission claims\n\nMAY ignore:\n- Stylistic wording\n- Non-operational descriptive framing\n- Narrative text that carries no factual consequence\n\n**Step 2 — Investigate with scope discipline:**\n\nRequired investigation order:\n1. Verify all claims within the reference document scope first.\n2. Fully review all high-risk claims inside scope with maximum depth.\n3. Expand beyond scope only when:\n   - Contradiction signals appear during in-scope review\n   - A dependency outside scope is required to validate an in-scope claim\n   - The claim involves a high-risk area\n\nHigh-risk priority areas (always full-depth review):\n- Setup steps and prerequisites\n- CLI commands and flags\n- Configuration keys and environment variables\n- Authentication, identity, and permissions\n- Deployment and release behaviour\n- External publishing actions (Confluence, Jira, MR/PR)\n- Data integrity assumptions\n- Destructive or irreversible operations\n\n**Step 3 — Gather evidence using the evidence hierarchy:**\n\nFor each claim, gather evidence from the highest-priority source available:\n\n| Priority | Evidence source | Examples |\n|----------|----------------|----------|\n| 1 (highest) | Source code, config files, schemas, route definitions | Read actual files, trace imports, check types |\n| 2 | Direct runtime verification | Shell command output, API response, generated artifact, git state |\n| 3 | Tests | Test assertions, coverage reports, test output |\n| 4 | MCP-queried system state | Confluence page content, Jira ticket fields, Context7 docs |\n| 5 | External docs, web pages, linked references | URL validation, web fetch results |\n| 6 (lowest) | Conversational assumptions or indirect inference | Not sufficient alone for `verified` |\n\nRules:\n- Higher-priority evidence overrides lower-priority evidence on the same claim.\n- Lower-priority evidence can support but not replace higher-priority evidence when higher-priority evidence is available.\n- A claim verified only by evidence at priority 5-6 is `partially_verified` at best.\n\n**Step 4 — For each claim, produce a verdict:**\n\n```\nCLAIM: <verifiable statement>\nEVIDENCE: <exact proof — source, file path + line, command output, git ref, URL>\nEVIDENCE PRIORITY: <1-6>\nVERDICT: verified | partially_verified | unverifiable | incorrect\n```\n\nVerdict definitions:\n- **verified** — positive supporting evidence exists at sufficient quality (priority 1-4) AND no contradictory evidence found.\n- **partially_verified** — some evidence exists but incomplete, OR no contradiction found but positive proof is not strong enough, OR evidence is only from priority 5-6 sources.\n- **unverifiable** — no sufficient evidence available from any source.\n- **incorrect** — contradicted by evidence. Describe the contradiction.\n\nCritical rule: A claim MUST NOT be classified as `verified` based solely on failure to find contradiction. Absence of counter-evidence without positive supporting evidence yields `partially_verified` or `unverifiable`.\n\nAudit continuity rule: When a claim is `incorrect` or a high-risk claim is\n`unverifiable`, the overall run is already headed for `FAIL`, but the review\nMUST continue through the remaining in-scope claims. Record every additional\nviolation found. Only the Precondition Check early-abort may stop the audit\nbefore all extracted claims are reviewed. This is not an early-abort.\n\n**Step 5 — Search for contradictory evidence:**\n\nFor each claim, actively seek disconfirming evidence:\n- Other call sites that depend on behaviour that was changed\n- Constants, configs, or feature flags that override or interact with the claim\n- Tests in other modules that implicitly rely on the old behaviour\n- Git state inconsistencies (uncommitted files, wrong branch, merge conflicts)\n- MCP/API responses that contradict stated outcomes\n- Broken links or missing referenced resources\n\n**Step 6 — Produce the overall verdict:**\n\nOverall PASS requires:\n- No claims with verdict `incorrect`\n- No high-risk claims with verdict `unverifiable`\n- Majority of in-scope claims at `verified` or `partially_verified`\n\nOverall FAIL when:\n- Any claim is `incorrect`\n- Any high-risk claim is `unverifiable`\n- Critical coverage gaps exist\n\nOnce any FAIL condition is met, mark the overall verdict as `FAIL`\nimmediately, but do not stop the review. Continue the bounded review and list\nall blocking issues discovered in scope unless the Precondition Check already\ntriggered early-abort. A normal FAIL during Audit does not permit short-\ncircuiting the remaining in-scope claims.\n\n**Output:** Per-claim audit results ready for verdict assembly.\n\n```json\n{\"challenge\":{\"type\":\"comment\",\"comment\":{\"min_length\":100},\"required\":true}}\n```\n\n## Verdict Assembly [SUBAGENT]\n\nAssemble the overall verdict, confidence level, failure classification, and diagnostic artifacts. Write to the verdict file.\n\n**Input:** Per-claim audit results from the Audit step, `{context}`.\n\n**Actions:**\n\n1. Determine the overall verdict: `PASS` or `FAIL` (per Step 6 rules above).\n   If a blocking issue is found early, keep reviewing the remaining in-scope\n   claims so the final report includes the complete violation list.\n\n2. Determine confidence level:\n   - **High** — all high-risk claims verified with priority 1-2 evidence, comprehensive contradiction search completed, no unverifiable areas in critical scope.\n   - **Medium** — most claims verified, some reliance on priority 3-4 evidence, minor unverifiable areas outside critical scope.\n   - **Low** — significant reliance on weak evidence, multiple unverifiable claims, limited contradiction search depth, or high-risk areas with incomplete coverage.\n\n3. On FAIL, classify the failure:\n\n| Failure class | When to use |\n|---------------|-------------|\n| `plan_incomplete` | Plan does not cover all acceptance criteria or has gaps |\n| `implementation_incorrect` | Code/output contradicts the plan |\n| `evidence_missing` | Cannot verify critical claims — evidence unavailable |\n| `contradiction_detected` | Positive evidence contradicts a claim |\n| `external_dependency_failure` | MCP, API, or external service unavailable or returning errors |\n| `verification_blocked` | Foundational precondition broken (from Precondition Check) |\n\n4. On FAIL, produce diagnostic artifacts:\n   - MCP verification failure → structured bug report to `reports/mcp-bug-<server>-<desc>-<date>.md` with: summary (one sentence: failure + server + tool), calls and responses in JSON code blocks (secrets redacted), reasoning (intent and interpretation), environment/context, reproduction steps.\n   - Code/test issue → blocking issues with file paths + line numbers + root cause analysis in verdict file.\n   - Plan gap → unverifiable claims, missing coverage areas, acceptance criteria not addressed in verdict file.\n   - Dead links → list of broken URLs/references with expected vs actual status in verdict file.\n\n5. Write the verdict file to `$KAIROS_WORK_DIR/{verdict_file}`:\n\nFor PASS:\n\n```markdown\nPASS\nConfidence: High|Medium|Low\n\n# Phase Critic: {verification_target}\n\n## Claims Audit\n\n### 1. <claim text>\n- **Evidence:** <exact proof>\n- **Evidence priority:** <1-6>\n- **Verdict:** verified\n\n### 2. <claim text>\n- **Evidence:** <exact proof>\n- **Evidence priority:** <1-6>\n- **Verdict:** partially_verified\n- **Gap:** <what is missing>\n\n...\n\n## Contradictions Searched\n- <areas searched and findings — none or description>\n\n## High-Risk Areas Reviewed\n- <list of high-risk areas and their verdict>\n\n## Confidence Rationale\n- <why High|Medium|Low>\n\n## Recommended Human Checks\n- <things that cannot be proven from code or available tools>\n```\n\nFor FAIL:\n\n```markdown\nFAIL\nConfidence: High|Medium|Low\nFailure class: <class>\n\n# Phase Critic: {verification_target}\n\n## Blocking Issues\n1. <claim that failed>: <why, what evidence contradicts it>\n2. <additional blocking claim>: <why, what evidence contradicts it>\n\n## Retry Guidance\n- <what to fix before retrying, informed by failure class>\n\n## Claims Audit\n...\n\n## Diagnostic Artifacts\n- <paths to any produced artifacts (bug reports, etc.)>\n```\n\n6. If in plan mode (native plan mode prevents file writes): present the verdict conversationally in chat instead of writing to file. Include all sections above.\n\n**Output:** Verdict file written to `$KAIROS_WORK_DIR/{verdict_file}`, or conversational verdict in plan mode.\n\n```json\n{\"challenge\":{\"type\":\"shell\",\"shell\":{\"cmd\":\"test -f \\\"$KAIROS_WORK_DIR/$CRITIC_VERDICT_FILE\\\" && head -1 \\\"$KAIROS_WORK_DIR/$CRITIC_VERDICT_FILE\\\" | grep -qiE '^(PASS|FAIL)' && head -2 \\\"$KAIROS_WORK_DIR/$CRITIC_VERDICT_FILE\\\" | tail -1 | grep -qi 'confidence' && echo 'Verdict file valid'\",\"timeout_seconds\":5},\"required\":true}}\n```\n\n## Completion Rule\n\nOnly reachable after all prior steps are solved.\n\nThis protocol is complete when:\n1. Preconditions checked — either verified or early-aborted with `verification_blocked`.\n2. Claims extracted under the extraction contract from reference document and invariants.\n3. Each claim investigated with scope discipline using the evidence hierarchy.\n4. CLAIM → EVIDENCE → VERDICT produced for every extracted claim.\n5. Contradictory evidence search performed for every claim.\n6. Overall verdict (`PASS` or `FAIL`) determined with confidence level.\n7. On FAIL: failure class assigned, diagnostic artifacts produced, retry guidance included.\n8. Verdict file written (agent mode) or conversational verdict presented (plan mode).\n"
+        "create-new-protocol": "---\nslug: create-new-protocol\nversion: \"4.0.1\"\ntitle: Create New KAIROS adapter/protocol\n---\n\n# Create New KAIROS Protocol\n\n## Activation Patterns\n\nKAIROS authoring lifecycle — create, review, or fix adapters/protocols/workflows.\nIn this context, those words refer to the same stored artifact and you can treat\nthem as synonyms. Supports three operations:\n\n- **create** — draft and train a new adapter/protocol from scratch (offered when activate finds no match).\n- **review** — audit existing adapters/protocols or adapter families for structural issues, missing cross-references, chaining gaps, DRY violations, or stale content. Read-only — produces a findings report.\n- **fix** — apply specific corrections to an existing adapter/protocol: add missing layers, update cross-references, fix contract JSON, re-train. Mutates the artifact.\n\n**Run this protocol when the user says ANY of:**\n\n- \"create a new KAIROS protocol\" / \"create new protocol adapter\"\n- \"register personal KAIROS adapter\" / \"register a personal adapter\"\n- \"train adapter into personal\" / \"train protocol into personal\"\n- \"train a workflow\" / \"register a new adapter\" / \"create a new workflow\"\n- \"review protocol\" / \"audit adapters\" / \"check protocol families for gaps\"\n- \"fix protocol\" / \"update adapter\" / \"patch protocol\"\n- \"create new protocol\" (when activate found no match and user confirms)\n\n**Trigger pattern:** **create** / **train** / **register** / **review** / **audit** / **fix** / **update** / **patch** + (protocol / adapter / workflow) [ + (new / existing / personal / KAIROS) ].\n\n**Must Never:**\n- Run when the user only asked to **execute** an existing protocol (use **activate** → **forward** (loop) → **reward**).\n- Trigger when a strong match already exists from activate and the user wants to run it, not review or fix it.\n- Mutate adapters during a `review` operation — produce findings only.\n\n**Must Always:**\n- Infer `{operation}` from trigger: create / review / fix.\n- For `create`: confirm intent, then gather requirements, draft, review, and train.\n- For `review`: export the target adapter(s), audit against the checklist in Gather Requirements, produce a gap report. No `train` call.\n- For `fix`: export the target adapter, identify the specific issue, draft the corrected markdown, get user approval, then `train` with `force_update: true`.\n- Include Activation Patterns as the first H2 and Reward Signal as the last H2 in any newly drafted adapter.\n- Apply DRY: no duplicated H2s, no boilerplate sections — fold shared content into steps or extract to a reference.\n- Enforce 350-line max per file. If content exceeds this, split into linked adapters (via `mcp` challenge with `activate`) or extract a type extension / reference.\n\n**Good trigger examples:**\n- \"Create a new KAIROS protocol for code review\" → run this protocol (create)\n- \"No match found; I want to create a new protocol\" → run this protocol (create)\n- \"Review all v4 protocol families for missing cross-references\" → run this protocol (review)\n- \"Audit the gitlab bundle for chaining gaps\" → run this protocol (review)\n- \"Fix the MR adapter — it's missing a branch validation step\" → run this protocol (fix)\n\n**Bad trigger examples:**\n- \"Run the standardize project protocol\" → use activate/forward, not this\n- \"Search for deployment protocol\" → use activate, not this\n- \"Create an MR\" → use the MR adapter, not this\n\n## Confirm Intent\n\nInfer `{operation}` from the user's trigger:\n\n| Signal | Operation |\n|---|---|\n| \"create\", \"new\", \"train\", no match from activate | **create** |\n| \"review\", \"audit\", \"check\", \"gaps\", \"cross-references\" | **review** |\n| \"fix\", \"update\", \"patch\", \"add missing\", \"correct\" | **fix** |\n\nFor `create`: Ask \"No existing protocol matched your query. Create a new one, or refine your search?\"\nFor `review`: Ask \"Which adapter(s) or bundle family to review?\" (accept: adapter title, bundle directory name, or \"all\").\nFor `fix`: Ask \"Which adapter to fix, and what's the issue?\" (accept: adapter title or URI + description of the problem).\n\n```json\n{\"contract\":{\"type\":\"user_input\",\"user_input\":{\"prompt\":\"Confirm operation and target\"},\"required\":true}}\n```\n\n## Gather Requirements\n\n### For `create` — collect details for a new protocol\n\n**1. Determine the pattern:**\n\n| Signal | Pattern |\n|---|---|\n| One workflow, no variants | **Standalone** — one protocol, all steps inline |\n| Multiple issue types / output formats / media | **Router + Extensions** — router classifies, routes via `activate` |\n| Domain has a decision tree (which type? which format?) | **Router + Extensions** |\n| Reference material needed by steps | Extract to a separate file, not a protocol |\n\nReal examples: Compose (writing router → 5 extensions), BNX/BIB (Jira routers → type-specific creation protocols).\n\n**2. Collect per protocol:**\n\n- **Title**: clear, descriptive (becomes H1)\n- **Steps**: what the protocol does (each becomes H2 with a challenge)\n- **Challenge type per step**: comment (agent output), user_input (human gate), mcp (tool call), shell (command)\n- **Domain reference**: guides/docs the protocol should load?\n- **Existing protocols**: `activate` for related adapters — reuse, compose, or extract shared content?\n- **DRY check**: what content would be duplicated across extensions? Extract to a shared reference or the router body.\n- **Size check**: will any single file exceed 350 lines? If yes, split into linked adapters or extract a reference now — do not plan to \"trim later\".\n\n**3. If Router pattern:**\n\n- What are the variants? (each becomes an extension protocol)\n- What decision questions classify the variant?\n- What types are forbidden?\n\n### For `review` — audit existing adapters against this checklist\n\nExport target adapter(s) via `export`. For each adapter, check:\n\n1. **Cross-reference completeness** — does the adapter reference all related adapters it depends on? Look for implicit dependencies (e.g. an MR adapter that creates branches but never references the branch naming policy).\n2. **Adapter handoff gaps** — if the adapter performs an action covered by another adapter (branch creation, Jira lookup, commit formatting), does it hand off to that adapter via `activate` or `forward`? Or does it silently skip the step, leaving the agent to improvise?\n3. **DRY violations** — is policy content duplicated inline instead of linking to the canonical source?\n4. **Contract coverage** — does every executable H2 have a contract JSON block? Are contract types appropriate (shell for observable commands, not comment)?\n5. **Activation pattern accuracy** — do trigger phrases match what users actually say? Are Must Never/Must Always complete?\n6. **Structure compliance** — first H2 is Activation Patterns, last H2 is Reward Signal, no duplicate H2 headings, under 350 lines.\n7. **Sibling consistency** — for adapters in the same family (e.g. GitLab MR vs GitHub PR), are equivalent steps present in both?\n\n### For `fix` — identify specific issue\n\nExport the target adapter via `export`. Read the current markdown. Identify the exact gap or error. Plan the minimal change (add layer, update reference, fix contract JSON). The fix should not alter unrelated layers.\n\nSummarize all gathered requirements or findings.\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":50},\"required\":true}}\n```\n\n## Draft Markdown\n\n### For `create` — draft new adapter markdown\n\nUsing the requirements, draft the full markdown for `train`.\n\n### For `review` — draft findings report\n\nProduce a structured gap report. For each finding: adapter title, gap type (from the review checklist), severity (high/medium/low), recommended fix (specific: which layer to add, which `activate` call to insert, which adapter reference to update). Save to `$KAIROS_WORK_DIR/protocol-review-findings.md`.\n\n### For `fix` — draft corrected adapter markdown\n\nExport the current adapter via `export`. Apply the identified fix to the markdown. Show a diff-style summary of what changed (layers added, references updated, contracts modified).\n\n### Shared drafting rules (all operations)\n\n**DRY — Don't Repeat Yourself:**\n\nEvery piece of knowledge must live in exactly one place in the protocol family. Before writing any content, ask: \"Does this already exist in another protocol, a shared reference, or CLAUDE.md?\"\n\n- Boilerplate (auth handling, assignment workflow, error tables, validation checklists) belongs **inside the step that needs it** — one sentence, not a section. If it's identical across a protocol family, extract it to a shared reference file and load it via `activate(query: \"...\")` or a stored adapter URI.\n- If two protocols share >50% of their body, extract the shared logic into a base protocol or reference.\n- Every H2 must earn its place: if it has no challenge, it's not a step — fold its content into a step that does.\n- Never duplicate an H2 heading within a file. KAIROS treats each H2 as a step — duplicates create phantom steps.\n\n**350-line maximum per file:**\n\nNo protocol file may exceed 350 lines. Both humans and AI lose coherence on longer documents.\n\n- If a protocol grows beyond 350 lines, **split it** — use an `mcp` challenge with `activate` or a stored adapter URI to link the continuation adapter, or extract domain-specific content into a reference/checklist file.\n- Router protocols are naturally short (~50–80 lines). Extension protocols should target 100–200 lines.\n- Type extensions and reference files (not full protocols) should stay under 150 lines.\n- Measure after drafting: `wc -l <file>`. If over 350, refactor before training.\n\n**Generic-first — create generic, link from detailed:**\n\nCreate protocols from generic to detailed. The generic adapter comes first and must stand alone — it works even with zero extensions. Specializations (type checklists, domain extensions) are created second and link *back* to the generic via `activate(query: \"...\")` or a stored adapter URI.\n\n- The generic protocol defines the workflow scaffold. The extension defines only what's different.\n- Teaching is showing the difference: an extension that only contains the delta is easier to read, write, and maintain than a full copy with scattered overrides.\n- Expansion is cheap — adding a new type means one new extension file. The generic adapters don't change. Zero regression risk on existing paths.\n\n**Slug convention — deterministic protocol linking:**\n\nEvery protocol gets a `slug` — a short, unique, lowercase-hyphenated key for export, offline migration, and repo bookkeeping. Runtime linking uses `activate` or a stored adapter URI. The engine auto-generates the slug from the H1 title. Add explicit `slug:` frontmatter only when the auto-generated value is too long or ambiguous.\n\n```yaml\n---\nslug: jira-markdown-formatting\n---\n# Jira Description Markdown Formatting via MCP\n```\n\n**When to use stored adapter URIs vs. activate:**\n\n- `forward` with a stored `kairos://adapter/{uuid}` URI — deterministic adapter-to-adapter routing. Use when the author or runtime already knows the target URI.\n- `activate` — user discovery and runtime type-dispatch when the target depends on the request text or only the adapter title is known at author time.\n\n**Slug naming rules:**\n\n1. **Families (router + extensions):** hierarchical. The router slug is the family prefix. Each child expands the parent by one hyphenated segment per routing level:\n   - `jira` → `jira-bib` → `jira-bib-bug`\n   - `compose` → `compose-email`\n   - `standardize` → `standardize-analyze`\n   - An agent can derive the parent slug by stripping the last segment. This enables mechanical traversal without search.\n\n2. **Standalone protocols (no family):** action-oriented. Describe what the protocol does, not where it lives. The bundle directory is the namespace — the slug does not repeat it.\n   - Good: `create-merge-request`, `makefile-setup`, `migrate-tf-to-git-sha`\n   - Bad: `gitlab-create-merge-request` (redundant — it's already in `gitlab/`)\n\n3. **Shared utilities:** prefix with the family they serve, at the family root level:\n   - `jira-markdown-formatting` (used by all `jira-*` children)\n   - `jira-alternative-mcp-unavailable`\n\n4. **General rules:**\n   - Lowercase, hyphen-separated. No underscores, no camelCase.\n   - Short as possible while remaining unambiguous. Target 2–4 segments.\n  - The slug is a durable bookkeeping key. Activation Patterns and adapter URIs handle runtime discoverability and routing.\n\n**Protocol structure rules:**\n\n- H1: protocol title (one H1 = one adapter)\n- First H2: Activation Patterns\n- Middle H2s: one per step, each ending with a ```json challenge block\n- Last H2: Reward Signal\n\n**Activation Patterns structure (required, exact order):**\n\n1. Trigger phrases — 3–6 quoted phrases\n2. Trigger pattern — verb + noun formula\n3. Must Never — 1–3 cases (imperative, no \"should\")\n4. Must Always — 1–3 mandatory behaviours\n5. Good trigger examples — 2–3 with `→ run this protocol`\n6. Bad trigger examples — 2–3 with `→ use X instead`\n\n**Challenge types:**\n\n| Type | Use for | Engine validates |\n|---|---|---|\n| `comment` | Agent extracts, analyzes, drafts, summarizes | min_length |\n| `user_input` | Human confirms, approves, chooses | Non-empty response |\n| `mcp` | Agent must call a specific tool | Tool called successfully |\n| `shell` | Agent must run a command | Exit code 0 |\n\n**Challenge JSON format** (place at end of each step). Use a **single** concrete `type` per step (`comment`, `user_input`, `mcp`, or `shell`). Do not use pipe-separated placeholders inside `type` — each ` ```json ` block with `{\"contract\":...}` becomes its own layer when stored via **`train`**.\n\n```text\n{\n  \"contract\": {\n    \"type\": \"comment\",\n    \"comment\": { \"min_length\": 50 },\n    \"required\": true\n  }\n}\n```\n\n**Router-specific steps:**\n\n- Classify step: decision tree table, forbidden types, common misclassifications. Challenge: `user_input`.\n- Route step: `activate(query: \"<exact adapter title>\")` per type, fallback field reference. Challenge: `mcp` with `tool_name: \"activate\"`.\n\n**If Router pattern:** draft the router AND each extension as separate markdown files.\n\nPost the full drafted markdown.\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":100},\"required\":true}}\n```\n\n## User Review\n\nFor `create`: present the drafted protocol(s) to the user. Ask to approve, request changes, or cancel. If Router pattern, present all files (router + extensions).\n\nFor `review`: present the findings report. Ask user which findings to act on (fix now, defer, dismiss). If any findings are accepted for fix, switch `{operation}` to `fix` and proceed to Train adapter for each.\n\nFor `fix`: present the corrected adapter markdown with a summary of changes. Ask to approve the fix or request adjustments.\n\n```json\n{\"contract\":{\"type\":\"user_input\",\"user_input\":{\"prompt\":\"Approve the draft (create/fix) or acknowledge findings (review)\"},\"required\":true}}\n```\n\n## Train adapter\n\nFor `create`: call `train` with the approved markdown. Use `force_update: false` unless the user explicitly asks to overwrite. If Router pattern: train the router first, then each extension.\n\nFor `review`: no `train` call. Save the findings report to the repo under `reports/` if the user requests it. Protocol complete.\n\nFor `fix`: call `train` with the corrected markdown and `force_update: true`. Also update the corresponding repo file under `kairos-v4/bundles/` to keep the local copy in sync.\n\nReport the outcome: adapter URI(s) for create/fix, or findings summary for review.\n\n```json\n{\"contract\":{\"type\":\"mcp\",\"mcp\":{\"tool_name\":\"train\"},\"required\":true}}\n```\n\n## Reward Signal\n\nProtocol complete when: `create` — adapter(s) stored via **`train`** and URI(s) reported. `review` — findings report delivered and acknowledged. `fix` — corrected adapter trained with `force_update: true` and repo file updated.\n",
+        "refine-search": "---\nversion: \"4.0.1\"\nslug: refine-search\ntitle: Get help refining your search\n---\n\n# Get help refining your search\n\n**You are an AI agent.** You ran **`activate`** and got no solid match (or only weak/ambiguous ones). This adapter helps you turn the user's vague request into a better query so the next **`activate`** can find the right adapter.\n\n## Activation Patterns\n\n**Run this adapter when:**\n\n- **activate** returned no match, or only choices with low **activation_score** (e.g. all &lt; 0.5).\n- The response included a **refine** choice directing you to improve the query.\n\n**Trigger pattern:** After **activate** when result is no strong match / refine suggested.\n\n**Must Never:**\n\n- Run when a strong match (score ≥ 0.5) already exists — use that choice and **forward** instead.\n- Run when the user has not yet asked for anything (no prior activation context).\n\n**Must Always:**\n\n- Run at most once per user request — if refining twice still yields no match, stop and offer **train** or ask the user to clarify.\n\n**Good trigger examples:**\n\n- **activate** returned only \"refine\" / weak matches → run this adapter\n- \"No protocol matched 'do the thing'\" → run this adapter\n\n**Bad trigger examples:**\n\n- **activate** returned a strong match → use that match, not this adapter\n- User asked \"what adapters exist?\" → use **activate**/**spaces**, not this adapter\n\n## Step 1: Extract what the user actually wants\n\nFrom the user's original message, identify goal, context, and gaps.\n\nWrite your analysis as your solution (goal + context + gaps, minimum 30 characters).\n\n```json\n{\n  \"contract\": {\n    \"type\": \"comment\",\n    \"comment\": { \"min_length\": 30 },\n    \"required\": true\n  }\n}\n```\n\n## Step 2: Build and run a refined activate query\n\nUsing your Step 1 analysis, construct a single query (3–8 specific words). Do not reuse the vague phrase that already failed.\n\nCall **`activate`** with it.\n\n- **Strong match (score >= 0.5):** Pick that choice and **forward** with its adapter URI.\n- **Weak matches only:** Ask the user to clarify, or pick the create choice to **train** a new adapter.\n\nDo not loop more than once — if two activations fail, the adapter likely does not exist yet.\n\n```json\n{\n  \"contract\": {\n    \"type\": \"mcp\",\n    \"mcp\": { \"tool_name\": \"activate\" },\n    \"required\": true\n  }\n}\n```\n\n## Reward Signal\n\nOnly reachable after all prior layers are satisfied.\n",
+        "create-new-protocol-review": "---\nversion: \"4.0.1\"\nslug: create-new-protocol-review\ntitle: Review and Publish New KAIROS Protocol\n---\n\n# Review and Publish New KAIROS Protocol\n\nValidate a drafted KAIROS protocol through format review, stranger review, user approval, and train. Invoked by the authoring adapter (`create-new-protocol`) or directly to re-review an existing draft.\n\n## Activation Patterns\n\n**Typically invoked by:** the authoring adapter's handoff step via `activate(query: \"Review and Publish New KAIROS Protocol\")` or a stored adapter URI.\n\n**Can be invoked directly when user says:**\n\n- \"review my protocol draft\" / \"validate this protocol\"\n- \"re-run format review on my draft\"\n- \"train my protocol\" / \"register my adapter\" (when a draft already exists)\n\n**Trigger pattern:** **review** / **validate** / **train** + (protocol / draft).\n\n**Must Never:**\n- Run without `$KAIROS_WORK_DIR` set and containing `draft-protocol.md`.\n- Skip format or stranger review steps.\n\n**Must Always:**\n- Verify `$KAIROS_WORK_DIR` and draft file exist before proceeding.\n- Require both reviews to pass before presenting to user.\n- Freeze the draft checksum after reviews pass and verify it before **`train`**.\n- Clean up `$KAIROS_WORK_DIR` after training (or on cancellation).\n\n**Good trigger examples:**\n- Handoff from `create-new-protocol` → run this protocol\n- \"Review and train my protocol draft\" → run this protocol\n\n**Bad trigger examples:**\n- \"Create a new protocol\" → use `create-new-protocol`, not this\n- \"Search for a protocol\" → use `activate`, not this\n\n---\n\n## Prerequisites\n\nThis protocol requires `$KAIROS_WORK_DIR` from the authoring adapter (engine-provided, persists across linked adapters):\n\n- `$KAIROS_WORK_DIR/draft-protocol.md` — the drafted protocol file\n- `$KAIROS_WORK_DIR/requirements.md` — requirements summary (optional, for context)\n\n**If invoked directly** (no authoring adapter), the engine creates `$KAIROS_WORK_DIR` when this adapter starts. Copy the draft file there before proceeding.\n\n**Security:** Do NOT write credentials, tokens, or secrets into any file in `$KAIROS_WORK_DIR`.\n\n---\n\n## Format Review [SUBAGENT]\n\nDelegate format verification to a subagent. The subagent writes its verdict to `$KAIROS_WORK_DIR/format-review.md`.\n\n**Input:** `$KAIROS_WORK_DIR/draft-protocol.md`.\n\n**Subagent task:**\n\n1. Read `$KAIROS_WORK_DIR/draft-protocol.md`.\n2. Verify protocol structure compliance:\n   - H1 present (exactly one)\n   - First H2 is Natural Language Triggers (with all 6 subsections: trigger phrases, trigger pattern, Must Never, Must Always, good examples, bad examples)\n   - Last H2 is Reward Signal\n   - Every middle H2 has a challenge block\n   - No duplicate H2 headings\n3. Verify subagent eligibility per step:\n   - Every H2 step has `[SUBAGENT]` tag\n   - Every step has explicit `**Input:**`, `**Actions:**`, `**Output:**`\n   - Actions are numbered and imperative\n4. Verify challenge type selection (per `activate(query: \"Challenge Type Selection Guide\")`):\n   - No `comment` challenges on steps that produce files, call tools, or check system state\n   - `shell` challenges use compound `&&` chains (not `;`)\n   - `shell` challenges include `timeout_seconds`\n5. Verify interpreter selection:\n   - Flag bash challenges containing `while read`, `grep | awk`, or escaped quotes deeper than one level — suggest Perl rewrite\n   - Multi-line regex validation MUST use `perl -0777` (not bash `grep`)\n   - JSON block validation MUST use `perl -MJSON` or `python3 -c 'import json'` (not bash pattern matching)\n   - Simple file tests (`test -f`, `which`, `git status`) stay bash\n6. Verify DRY compliance:\n   - No duplicated content across files (if Router pattern)\n   - No boilerplate sections — shared content extracted or inlined\n7. Verify 350-line limit:\n   - Count lines. If over 350, list which sections to split or extract.\n8. Verify slug convention:\n   - Slug present in frontmatter\n   - Follows naming rules (lowercase, hyphenated, 2–4 segments)\n   - If Router: children expand parent slug by one segment\n9. Write verdict to `$KAIROS_WORK_DIR/format-review.md`. First line MUST be `PASS` or `FAIL`. Remaining lines: list of specific fixes if FAIL.\n\n**Output:** `$KAIROS_WORK_DIR/format-review.md` with verdict on first line.\n\n**If fail:** Main agent applies fixes to the draft and re-runs this step until pass.\n\n```json\n{\"contract\":{\"type\":\"shell\",\"shell\":{\"cmd\":\"test -f \\\"$KAIROS_WORK_DIR/format-review.md\\\" && head -1 \\\"$KAIROS_WORK_DIR/format-review.md\\\" | grep -qi 'pass'\",\"timeout_seconds\":5},\"required\":true}}\n```\n\n## Stranger Review [SUBAGENT]\n\nDelegate executability review to a subagent with junior AI agent persona. The subagent writes its verdict to `$KAIROS_WORK_DIR/stranger-review.md`.\n\n**Input:** `$KAIROS_WORK_DIR/draft-protocol.md` (post format-review fixes).\n\n**Subagent task:**\n\n1. Assume persona: Junior AI agent, first time encountering KAIROS protocols.\n2. **Mocked dry-run (most important):** Walk through every step in order and produce a mocked but **structurally correct** challenge response. If a mock is wrong, the protocol is ambiguous.\n   - **`mcp` challenges:** Return valid MCP tool-call JSON with correct `tool_name`, plausible `arguments`, and realistic `result` envelope. No placeholder strings.\n   - **`shell` challenges:** Write the exact command. If non-destructive, show expected stdout/stderr and exit code. Destructive: show command only.\n   - **`user_input` challenges:** Write a realistic user response matching all constraints. If choice implied, pick one and justify.\n   - **`comment` challenges:** Write a realistic agent comment meeting `min_length`, covering the step's stated output, no filler.\n3. **Clarity checks** (alongside dry-run):\n   - **Executability test:** Can I follow step-by-step without guessing? (yes/no + explanation)\n   - **Ambiguity check:** Vague terms like \"appropriate\", \"reasonable\", \"as needed\"? (list every instance)\n   - **Missing context:** Steps referencing undefined variables or concepts? (list them)\n   - **Missing examples:** Complex rules without examples? (list them)\n4. Write verdict to `$KAIROS_WORK_DIR/stranger-review.md`. First line MUST be `PASS` or `FAIL`. Remaining lines: mocked dry-run responses and clarity check results. If FAIL, include specific gaps with the failing mock inline.\n\n**Output:** `$KAIROS_WORK_DIR/stranger-review.md` with verdict on first line and full dry-run.\n\n**If fail:** Main agent revises draft — replace vague terms, add examples, define missing variables, fix steps whose mock drifted from intent. Re-run until pass.\n\n```json\n{\"contract\":{\"type\":\"shell\",\"shell\":{\"cmd\":\"test -f \\\"$KAIROS_WORK_DIR/stranger-review.md\\\" && head -1 \\\"$KAIROS_WORK_DIR/stranger-review.md\\\" | grep -qi 'pass'\",\"timeout_seconds\":5},\"required\":true}}\n```\n\n## Checksum Freeze [SUBAGENT]\n\nFreeze the draft after both reviews pass. Prevents accidental edits between \"reviews passed\" and \"user approved\".\n\n**Input:** `$KAIROS_WORK_DIR/draft-protocol.md` (post both reviews).\n\n**Actions:**\n1. Compute md5 checksum of the draft file.\n2. Write checksum to `$KAIROS_WORK_DIR/draft-protocol.md.md5`.\n\n**Output:** `$KAIROS_WORK_DIR/draft-protocol.md.md5` containing the frozen checksum.\n\n```json\n{\"contract\":{\"type\":\"shell\",\"shell\":{\"cmd\":\"md5 -q \\\"$KAIROS_WORK_DIR/draft-protocol.md\\\" > \\\"$KAIROS_WORK_DIR/draft-protocol.md.md5\\\" && test -s \\\"$KAIROS_WORK_DIR/draft-protocol.md.md5\\\"\",\"timeout_seconds\":5},\"required\":true}}\n```\n\n## User Review [SUBAGENT]\n\nPresent the drafted and reviewed protocol to the user for final approval.\n\n**Input:** `$KAIROS_WORK_DIR/draft-protocol.md`, `$KAIROS_WORK_DIR/format-review.md`, `$KAIROS_WORK_DIR/stranger-review.md`.\n\n**Actions:**\n1. Present full protocol markdown (or all files if Router pattern).\n2. Summarize: pattern used, step count, challenge types, slug(s), both review verdicts.\n3. Ask: \"Type 'approved' to train (register the adapter), describe what needs adjustment, or 'cancel'.\"\n\n**Output:** User approval, change requests, or cancellation.\n\n```json\n{\"contract\":{\"type\":\"user_input\",\"user_input\":{\"prompt\":\"Review the protocol draft above. Type 'approved' to run train (register the adapter), describe adjustments, or 'cancel'.\"},\"required\":true}}\n```\n\n## Train adapter [SUBAGENT]\n\nVerify the draft is unchanged since checksum freeze, then call `train`.\n\n**Input:** Approved `$KAIROS_WORK_DIR/draft-protocol.md`, slug from frontmatter.\n\n**Actions:**\n1. Verify draft unchanged: `md5 -q \"$KAIROS_WORK_DIR/draft-protocol.md\" | diff - \"$KAIROS_WORK_DIR/draft-protocol.md.md5\"`. If diff fails, warn user and abort.\n2. Call `train` with `force_update: false` (unless user explicitly asked to overwrite).\n3. If Router pattern: train the router first, then each extension in order.\n4. Verify each **`train`** call succeeded by checking the returned URI.\n5. Report the adapter URI(s) back to the user with clickable links.\n\n**Output:** Confirmation with stored adapter URI(s) and slug(s).\n\n```json\n{\"contract\":{\"type\":\"mcp\",\"mcp\":{\"tool_name\":\"train\"},\"required\":true}}\n```\n\n## Reward Signal\n\nOnly reachable after all prior steps are solved.\n\n**Cleanup:** `$KAIROS_WORK_DIR` is cleaned up by the engine at `reward`.\n\nThe user now has a trained (registered) KAIROS adapter that:\n1. Passed Format Review — structure, DRY, 350-line limit, slug convention, challenge type selection.\n2. Passed Stranger Review — mocked dry-run with structurally correct challenge responses, unambiguous, executable by a junior AI agent.\n3. Checksum verified — draft unchanged between review pass and **`train`**.\n4. User approved the final draft.\n5. Successfully stored via **`train`** and discoverable via `activate`.\n",
+        "challenge-type-guide": "---\nversion: \"4.0.1\"\nslug: challenge-type-guide\ntitle: Challenge Type Selection Guide\n---\n\n# Challenge Type Selection Guide\n\nDecision rules, JSON formats, interpreter selection, and anti-patterns for choosing KAIROS challenge types. Loaded by protocol-authoring agents during drafting and review.\n\n## Activation Patterns\n\n**Typically invoked by:** `create-new-protocol` (authoring adapter) Draft Markdown step and `create-new-protocol-review` (review adapter) Format Review step via `activate(query: \"Challenge Type Selection Guide\")` or a stored adapter URI.\n\n**Can be invoked directly when agent needs:**\n\n- \"challenge type reference\" / \"which challenge type to use\"\n- \"how to write shell challenges\" / \"challenge format\"\n- \"interpreter selection for challenges\"\n\n**Trigger pattern:** **challenge** + (type | format | selection | guide).\n\n**Must Never:**\n- Be used as an execution protocol — this is a reference policy, not a workflow.\n\n**Must Always:**\n- Be consulted before assigning challenge types to protocol steps.\n\n**Good trigger examples:**\n- Drafting a new protocol and need challenge types → load this\n- Reviewing challenge type selection in a draft → load this\n\n**Bad trigger examples:**\n- \"Create a new protocol\" → use `create-new-protocol`\n- \"Review my protocol draft\" → use `create-new-protocol-review`\n\n---\n\n## Core Rules\n\n`comment` is the challenge type of **last resort**. If a step produces any observable artifact — a file, a git state change, an API response, a process exit code — use `shell` or `mcp` instead.\n\n### Decision Tree\n\n```\nDoes the step batch multiple TODO items into a phase?\n ├─ YES → Pattern B: Phase step (shell gate on hard artifacts) + phase-critic review step\n └─ NO → Does the step call an MCP tool?\n          ├─ YES → \"mcp\" with tool_name\n          └─ NO → Does the step produce or modify a file?\n                   ├─ YES → \"shell\" to verify the file\n                   └─ NO → Does the step require human approval or choice?\n                            ├─ YES → \"user_input\" with a specific prompt\n                            └─ NO → Does the step run a command or check system state?\n                                     ├─ YES → \"shell\"\n                                     └─ NO → \"comment\" (pure reasoning, no artifact)\n```\n\n**When to use Pattern A (fine-grained steps) vs Pattern B (phase+TODO+critic):**\n\n| Pattern A: Fine-grained | Pattern B: Phase+Critic |\n|--------------------------|-------------------------|\n| Simple, linear protocols | Complex multi-step workflows |\n| Each step is independently verifiable | Individual step challenges would be trivially satisfiable |\n| Few steps (3-5) | Many steps that can batch (6+) |\n| Single MCP call or file operation per step | Multiple related operations per phase |\n| Jira creation, policy lookups, single tool calls | Implement, Standardize, Compose workflows |\n\n### Challenge JSON Formats\n\n**shell** — engine runs command, checks exit code 0:\n\n\n> ```json\n> {\"contract\":{\"type\":\"shell\",\"shell\":{\"cmd\":\"<command>\",\"timeout_seconds\":30},\"required\":true}}\n> ```\n\n**mcp** — engine confirms named MCP tool was invoked:\n\n> ```json\n> {\"contract\":{\"type\":\"mcp\",\"mcp\":{\"tool_name\":\"<tool>\"},\"required\":true}}\n> ```\n\nWith pinned arguments:\n\n> ```json\n> {\"contract\":{\"type\":\"mcp\",\"mcp\":{\"tool_name\":\"activate\",\"arguments\":{\"query\":\"some adapter title\"}},\"required\":true}}\n> ```\n\n**user_input** — engine confirms user provided non-empty response:\n\n> ```json\n> {\"contract\":{\"type\":\"user_input\",\"user_input\":{\"prompt\":\"<specific question>\"},\"required\":true}}\n> ```\n\n**comment** — engine checks min_length only (last resort):\n\n> ```json\n> {\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":50},\"required\":true}}\n> ```\n\n### Shell Challenge Rules\n\n- Chain checks with `&&` (not `;`) — first failure short-circuits.\n- Always set `timeout_seconds`: 5s for local checks, 30–120s for network/build.\n- All file paths MUST use `$KAIROS_WORK_DIR/` prefix (never hardcoded `/tmp/`).\n- Use `test -f` for existence, `grep -q` for content, `wc -l | awk` for line counts.\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":30},\"required\":true}}\n```\n\n---\n\n## Interpreter Selection\n\nFor text validation, regex, and structural checks, **Perl is often shorter, clearer, and more correct** than bash.\n\n| Task | Use bash | Use perl | Use python3 |\n|---|---|---|---|\n| File exists, tool installed, git state | `test -f`, `which`, `git status` | -- | -- |\n| Simple content grep | `grep -q 'pattern' file` | -- | -- |\n| Multi-line regex | -- | `perl -0777 -ne '/pat/ms or die'` | -- |\n| Count + assert (headings, sections) | `grep -c \\| awk` (fragile) | `perl -0777 -ne '@m=/pat/g; die if @m<N'` | -- |\n| Paragraph processing (commits, blocks) | `while read` loop (messy) | `perl -00 -ne '...'` | -- |\n| JSON validation | `python3 -m json.tool` | `perl -MJSON -e 'decode_json(do{local$/;<>})'` | `python3 -c 'import json; ...'` |\n| YAML validation | -- | -- | `python3 -c 'import yaml; ...'` |\n| Complex data structure checks | -- | -- | `python3 -c 'import json; d=json.load(...); assert ...'` |\n\n**Rule of thumb:** If you're writing `grep | awk`, `while read`, nested escaping, or multi-line patterns in bash — rewrite in Perl. If you need `import` for a data format (YAML, TOML) — use Python.\n\n### Perl Flags Cheat Sheet\n\n| Flag | Effect | Use case |\n|---|---|---|\n| `-e '...'` | Execute code | Every Perl challenge |\n| `-n` | Implicit `while(<>)` loop, no auto-print | Process lines, filter |\n| `-p` | Like `-n` but auto-prints `$_` | Transform-and-verify |\n| `-l` | Auto-chomp + auto-newline | Clean line processing |\n| `-a` | Auto-split into `@F` (like awk) | Field extraction |\n| `-0777` | Slurp entire file as one string | Multi-line regex |\n| `-00` | Paragraph mode (split on blank lines) | Commit messages, markdown blocks |\n| `-MJSON` | Load core JSON module | JSON validation without Python |\n\n### Bash vs Perl Examples\n\n**Count H2 headings and verify required sections:**\n\nbash (fragile):\n\n> Example:\n> ```bash\n> grep -c '^## ' \"$D\" | awk '$1 >= 3' && grep -q '^## Natural Language Triggers' \"$D\" && grep -q '^## Reward Signal' \"$D\"\n> ```\n\nperl (one pass, clear logic):\n\n> Example:\n> ```bash\n> perl -0777 -ne '@h=/^## (.+)/mg; die \"Need >=3 H2s\" if @h<3; grep(/^Natural Language Triggers$/,@h) or die \"Missing NLT\"; grep(/^Reward Signal$/,@h) or die \"Missing RS\"' \"$D\"\n> ```\n\n**Validate JSON challenge blocks:**\n\nperl (core JSON module):\n\n> Example:\n> ```bash\n> perl -MJSON -0777 -ne '@b=/```json\\s*\\n(\\{.*?\\})\\s*\\n```/gs; die \"No blocks\" unless @b; eval{decode_json($_)} or die \"Bad JSON: $@\" for @b; print scalar(@b).\" valid\\n\"' \"$D\"\n> ```\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":30},\"required\":true}}\n```\n\n---\n\n## Anti-Patterns\n\n| Anti-Pattern | Why It Fails | Fix |\n|---|---|---|\n| `comment` with `min_length: 20` | Trivially satisfiable with filler | Raise to 50+, or switch to `shell` if artifact exists |\n| `comment` for steps that run commands | Says \"run X\" but only checks agent wrote words | Use `shell` with the actual command |\n| `comment` for steps that call MCP tools | Says \"call tool Y\" but only checks text output | Use `mcp` with `tool_name` |\n| `shell` without `timeout_seconds` | May hang indefinitely | Always set timeout |\n| `user_input` with generic prompt \"Confirm\" | User doesn't know what they're confirming | Write a specific question |\n| `shell` with `echo 'placeholder'` | Always passes, proves nothing | Replace with real verification command |\n| Checks chained with `;` instead of `&&` | Later checks run even if earlier ones fail | Use `&&` for short-circuit |\n| Hardcoded `/tmp/` paths | Concurrent runs collide; world-readable on Linux | Use `$KAIROS_WORK_DIR` |\n| bash `while read \\| grep \\| awk` chains | Fragile, escaping nightmare, non-portable | Rewrite in Perl |\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":30},\"required\":true}}\n```\n\n---\n\n## Security and Concurrency\n\n### Session-Scoped Working Directory\n\nNever use hardcoded `/tmp/` paths. Use a session-scoped, user-private working directory:\n\n> Example:\n> ```bash\n> export KAIROS_WORK_DIR=$(mktemp -d \"${XDG_RUNTIME_DIR:-${TMPDIR:-/tmp}}/kairos-XXXXXX\")\n> chmod 700 \"$KAIROS_WORK_DIR\"\n> ```\n\n**Priority chain:** `XDG_RUNTIME_DIR` (preferred, per-user, `0700` by spec) → `TMPDIR` (macOS fallback) → `/tmp` (last resort, `chmod 700`).\n\n**Why:** Concurrent chat sessions running the same protocol would collide on hardcoded paths. `mktemp -d` guarantees isolation. Reward Signal MUST `rm -rf \"$KAIROS_WORK_DIR\"`.\n\n**Rules:** All file paths in shell challenges use `$KAIROS_WORK_DIR/` prefix. Prerequisites section creates it. Reward Signal cleans it up. Never write credentials or secrets to files.\n\n```json\n{\"contract\":{\"type\":\"comment\",\"comment\":{\"min_length\":30},\"required\":true}}\n```\n\n---\n\n## Composition Patterns\n\n**Multi-check compound command** — chain with `&&`, first failure short-circuits:\n\n> Example:\n> ```bash\n> test -f <file> && grep -q '<required>' <file> && wc -l < <file> | awk '$1 <= 350'\n> ```\n\n**Freeze-then-verify** — two consecutive steps:\n- Step N (after review): `md5 -q <file> > \"$KAIROS_WORK_DIR/<file>.md5\"`\n- Step N+1 (before publish): `md5 -q <file> | diff - \"$KAIROS_WORK_DIR/<file>.md5\"`\n\n**Write-then-grep** — subagent delegation:\n- Subagent instruction: \"Write verdict to `$KAIROS_WORK_DIR/<name>.md`. First line: `PASS` or `FAIL`.\"\n- Main agent challenge: `head -1 \"$KAIROS_WORK_DIR/<name>.md\" | grep -qi 'pass'`\n\n**Phase-batch with critic** — batch TODO items into a phase, then start the\n`phase-critic` meta-protocol via `forward` with the stored adapter URI\n`kairos://adapter/00000000-0000-0000-0000-000000002005` to adversarially\nvalidate all outputs at once:\n- Phase step: agent executes N TODO items using `TodoWrite` to track progress. Shell challenge verifies hard artifacts (files exist, branch created, etc.).\n- Critic step: fire `phase-critic` with reference document + calling protocol slug + verdict file path. Critic extracts claims under the extraction contract, investigates with scope discipline using the evidence hierarchy, and writes verdict to `$KAIROS_WORK_DIR/critic-<phase>.md`. First line: `PASS` or `FAIL`. Second line: confidence level.\n- Main agent challenge: `head -1 \"$KAIROS_WORK_DIR/critic-<phase>.md\" | grep -qi '^pass'`\n- On FAIL: auto-retry 1x (re-execute failed TODOs, re-fire critic as fresh run). 2nd FAIL escalates to user with failure class and diagnostic artifacts.\n- Use when: multiple steps can execute as a batch and individual step challenges would be trivially satisfiable. The critic provides stronger validation than per-step checks because it reviews holistically, applies the evidence hierarchy, and searches for contradictions.\n- Trade-off: less granular failure isolation — if the critic fails, the failure class and blocking issues guide diagnosis.\n- See `phase-critic` meta-protocol (slug: `phase-critic`) for full audit contract, verdict semantics, and evidence hierarchy.\n\n**Dry-run before execution** — three steps:\n- Step N: `<tool> --dry-run` (shell challenge)\n- Step N+1: `user_input` (human reviews output)\n- Step N+2: `<tool> --yes` (shell challenge)\n\n```json\n{\"challenge\":{\"type\":\"comment\",\"comment\":{\"min_length\":30},\"required\":true}}\n```\n\n## Reward Signal\n\nOnly reachable after all prior steps are solved.\n\nThe agent has loaded the challenge type selection guide and can now:\n1. Pick the correct challenge type for each protocol step using the decision tree.\n2. Write valid challenge JSON in the correct format.\n3. Choose the right interpreter (bash / perl / python3) for shell challenges.\n4. Avoid all listed anti-patterns.\n5. Apply security and concurrency rules (`$KAIROS_WORK_DIR`).\n6. Use composition patterns for multi-check, freeze-verify, and subagent delegation.\n",
+        "phase-critic": "---\nversion: \"4.0.1\"\nslug: phase-critic\ntitle: Phase Critic\n---\n\n# Phase Critic\n\nBounded adversarial investigator fired as a subagent at phase boundaries. Receives a reference document, loads the calling protocol's invariants, and independently verifies the verification target by extracting claims, gathering evidence, and searching for contradictions.\n\n## Natural Language Triggers\n\n**Typically invoked by:** Any non-meta protocol at the end of Phase 1\n(Plan) or Phase 2 (Implement) via `forward` with the stored adapter URI\n`kairos://adapter/00000000-0000-0000-0000-000000002005`.\n\n**Can be invoked directly when agent needs:**\n\n- \"review phase output\" / \"verify plan\" / \"audit implementation\"\n- \"adversarial review\" / \"critic review\"\n\n**Trigger pattern:** **review** / **verify** / **audit** / **critic** + (phase / plan / implementation / output).\n\n**Must Never:**\n\n- Modify any file, branch, or configuration outside `$KAIROS_WORK_DIR`. This is forensic validation, not execution.\n- Trust the executor's assertions — verify independently from artifacts and current state.\n- Classify a claim as `verified` based solely on failure to find contradiction. Positive supporting evidence is required.\n- Accept \"probably correct\" or indirect inference as sufficient evidence for a `verified` verdict on high-risk claims.\n- Rely on hidden prior reasoning state. Each run is stateless — reason only from artifacts and context available now.\n- Continue deep verification after a Precondition Check early-abort trigger is\n  detected.\n\n**Must Always:**\n\n- Extract claims under the defined extraction contract before investigating.\n- Verify all in-scope claims before expanding investigation.\n- Apply the evidence hierarchy — higher-priority evidence overrides lower.\n- Search for contradictory evidence, not just confirmatory evidence.\n- Include a confidence level (High / Medium / Low) in every verdict.\n- Include a failure class in every FAIL verdict.\n- Produce diagnostic artifacts on FAIL.\n\n**Good trigger examples:**\n\n- Implement protocol fires this after Phase 1 to validate the plan → run this protocol\n- Compose protocol fires this after Phase 2 to verify the page was written correctly → run this protocol\n\n**Bad trigger examples:**\n\n- \"Create a new protocol\" → use `create-new-protocol`, not this\n- \"Implement a feature\" → use `implement`, not this\n\n---\n\n## Artifact Contract\n\nThis protocol receives:\n\n```\n{\n  reference_document: string (required) — path or content of the specification to verify against\n  calling_protocol_slug: string (required) — slug of the calling protocol (to load Must Never / Must Always invariants)\n  verification_target: string (required) — what to verify: \"plan\" | \"codebase\" | \"output\" | description of target\n  context: {\n    operation: string (optional) — e.g. \"create\" | \"fix\" | \"review\" | \"update\"\n    work_dir: string (required) — $KAIROS_WORK_DIR path\n    verdict_file: string (required) — filename for verdict output (e.g. \"plan-review.md\" or \"impl-review.md\")\n  }\n}\n```\n\nThis protocol produces:\n\n```\n{\n  verdict: \"PASS\" | \"FAIL\"\n  confidence: \"High\" | \"Medium\" | \"Low\"\n  failure_class: string (only on FAIL) — one of: plan_incomplete, implementation_incorrect, evidence_missing, contradiction_detected, external_dependency_failure, verification_blocked\n  verdict_file: \"$KAIROS_WORK_DIR/{verdict_file}\" — structured audit report (agent mode) or conversational output (plan mode)\n}\n```\n\n---\n\n## Precondition Check [SUBAGENT]\n\nVerify foundational preconditions before deep investigation. Early-abort if any are broken.\n\n**Input:** `{reference_document}`, `{calling_protocol_slug}`, `{context}`.\n\n**Actions:**\n\n1. Verify the reference document exists and is readable. If missing or empty → early-abort.\n2. Verify `$KAIROS_WORK_DIR` exists. If missing → early-abort.\n3. Load the calling protocol's Must Never / Must Always sections via `{calling_protocol_slug}`. If protocol not found → warn but continue (invariants will be empty).\n4. For Phase 2 reviews: verify the verification target is available (branch exists, files changed, output artifacts present). If the target state is fundamentally wrong (wrong branch, no changes when changes required) → early-abort.\n5. Check that tools needed for verification are available (git, relevant MCP servers). If a required tool is unavailable and blocks verification → early-abort.\n\n**On early-abort:**\n\n- Set verdict to `FAIL`\n- Set failure class to `verification_blocked`\n- Set confidence to `Low`\n- Write focused diagnostics explaining the precondition failure\n- Skip all subsequent steps — do not attempt claim verification\n\n**Output:** Preconditions verified, or early-abort with diagnostics.\n\n```json\n{\"challenge\":{\"type\":\"comment\",\"comment\":{\"min_length\":50},\"required\":true}}\n```\n\n## Audit [SUBAGENT]\n\nPerform bounded adversarial review of the verification target against the reference document and invariants.\n\n**Input:** Reference document content, invariants (Must Never / Must Always), verification target access, `{context}`.\n\n**Actions:**\n\n**Step 1 — Extract claims under the extraction contract:**\n\nFrom the reference document and invariants, extract every verifiable claim. Prioritise extraction as follows:\n\nMUST extract and verify:\n- Operational claims (steps, procedures, workflows)\n- Actionable instructions (commands, API calls, tool invocations)\n- Configuration and environment variable claims\n- Architecture claims that imply behaviour\n- Guarantees and constraints\n- Deploy/runtime assumptions\n- Security, auth, and permission claims\n\nMAY ignore:\n- Stylistic wording\n- Non-operational descriptive framing\n- Narrative text that carries no factual consequence\n\n**Step 2 — Investigate with scope discipline:**\n\nRequired investigation order:\n1. Verify all claims within the reference document scope first.\n2. Fully review all high-risk claims inside scope with maximum depth.\n3. Expand beyond scope only when:\n   - Contradiction signals appear during in-scope review\n   - A dependency outside scope is required to validate an in-scope claim\n   - The claim involves a high-risk area\n\nHigh-risk priority areas (always full-depth review):\n- Setup steps and prerequisites\n- CLI commands and flags\n- Configuration keys and environment variables\n- Authentication, identity, and permissions\n- Deployment and release behaviour\n- External publishing actions (Confluence, Jira, MR/PR)\n- Data integrity assumptions\n- Destructive or irreversible operations\n\n**Step 3 — Gather evidence using the evidence hierarchy:**\n\nFor each claim, gather evidence from the highest-priority source available:\n\n| Priority | Evidence source | Examples |\n|----------|----------------|----------|\n| 1 (highest) | Source code, config files, schemas, route definitions | Read actual files, trace imports, check types |\n| 2 | Direct runtime verification | Shell command output, API response, generated artifact, git state |\n| 3 | Tests | Test assertions, coverage reports, test output |\n| 4 | MCP-queried system state | Confluence page content, Jira ticket fields, Context7 docs |\n| 5 | External docs, web pages, linked references | URL validation, web fetch results |\n| 6 (lowest) | Conversational assumptions or indirect inference | Not sufficient alone for `verified` |\n\nRules:\n- Higher-priority evidence overrides lower-priority evidence on the same claim.\n- Lower-priority evidence can support but not replace higher-priority evidence when higher-priority evidence is available.\n- A claim verified only by evidence at priority 5-6 is `partially_verified` at best.\n\n**Step 4 — For each claim, produce a verdict:**\n\n```\nCLAIM: <verifiable statement>\nEVIDENCE: <exact proof — source, file path + line, command output, git ref, URL>\nEVIDENCE PRIORITY: <1-6>\nVERDICT: verified | partially_verified | unverifiable | incorrect\n```\n\nVerdict definitions:\n- **verified** — positive supporting evidence exists at sufficient quality (priority 1-4) AND no contradictory evidence found.\n- **partially_verified** — some evidence exists but incomplete, OR no contradiction found but positive proof is not strong enough, OR evidence is only from priority 5-6 sources.\n- **unverifiable** — no sufficient evidence available from any source.\n- **incorrect** — contradicted by evidence. Describe the contradiction.\n\nCritical rule: A claim MUST NOT be classified as `verified` based solely on failure to find contradiction. Absence of counter-evidence without positive supporting evidence yields `partially_verified` or `unverifiable`.\n\nAudit continuity rule: When a claim is `incorrect` or a high-risk claim is\n`unverifiable`, the overall run is already headed for `FAIL`, but the review\nMUST continue through the remaining in-scope claims. Record every additional\nviolation found. Only the Precondition Check early-abort may stop the audit\nbefore all extracted claims are reviewed. This is not an early-abort.\n\n**Step 5 — Search for contradictory evidence:**\n\nFor each claim, actively seek disconfirming evidence:\n- Other call sites that depend on behaviour that was changed\n- Constants, configs, or feature flags that override or interact with the claim\n- Tests in other modules that implicitly rely on the old behaviour\n- Git state inconsistencies (uncommitted files, wrong branch, merge conflicts)\n- MCP/API responses that contradict stated outcomes\n- Broken links or missing referenced resources\n\n**Step 6 — Produce the overall verdict:**\n\nOverall PASS requires:\n- No claims with verdict `incorrect`\n- No high-risk claims with verdict `unverifiable`\n- Majority of in-scope claims at `verified` or `partially_verified`\n\nOverall FAIL when:\n- Any claim is `incorrect`\n- Any high-risk claim is `unverifiable`\n- Critical coverage gaps exist\n\nOnce any FAIL condition is met, mark the overall verdict as `FAIL`\nimmediately, but do not stop the review. Continue the bounded review and list\nall blocking issues discovered in scope unless the Precondition Check already\ntriggered early-abort. A normal FAIL during Audit does not permit short-\ncircuiting the remaining in-scope claims.\n\n**Output:** Per-claim audit results ready for verdict assembly.\n\n```json\n{\"challenge\":{\"type\":\"comment\",\"comment\":{\"min_length\":100},\"required\":true}}\n```\n\n## Verdict Assembly [SUBAGENT]\n\nAssemble the overall verdict, confidence level, failure classification, and diagnostic artifacts. Write to the verdict file.\n\n**Input:** Per-claim audit results from the Audit step, `{context}`.\n\n**Actions:**\n\n1. Determine the overall verdict: `PASS` or `FAIL` (per Step 6 rules above).\n   If a blocking issue is found early, keep reviewing the remaining in-scope\n   claims so the final report includes the complete violation list.\n\n2. Determine confidence level:\n   - **High** — all high-risk claims verified with priority 1-2 evidence, comprehensive contradiction search completed, no unverifiable areas in critical scope.\n   - **Medium** — most claims verified, some reliance on priority 3-4 evidence, minor unverifiable areas outside critical scope.\n   - **Low** — significant reliance on weak evidence, multiple unverifiable claims, limited contradiction search depth, or high-risk areas with incomplete coverage.\n\n3. On FAIL, classify the failure:\n\n| Failure class | When to use |\n|---------------|-------------|\n| `plan_incomplete` | Plan does not cover all acceptance criteria or has gaps |\n| `implementation_incorrect` | Code/output contradicts the plan |\n| `evidence_missing` | Cannot verify critical claims — evidence unavailable |\n| `contradiction_detected` | Positive evidence contradicts a claim |\n| `external_dependency_failure` | MCP, API, or external service unavailable or returning errors |\n| `verification_blocked` | Foundational precondition broken (from Precondition Check) |\n\n4. On FAIL, produce diagnostic artifacts:\n   - MCP verification failure → structured bug report to `reports/mcp-bug-<server>-<desc>-<date>.md` with: summary (one sentence: failure + server + tool), calls and responses in JSON code blocks (secrets redacted), reasoning (intent and interpretation), environment/context, reproduction steps.\n   - Code/test issue → blocking issues with file paths + line numbers + root cause analysis in verdict file.\n   - Plan gap → unverifiable claims, missing coverage areas, acceptance criteria not addressed in verdict file.\n   - Dead links → list of broken URLs/references with expected vs actual status in verdict file.\n\n5. Write the verdict file to `$KAIROS_WORK_DIR/{verdict_file}`:\n\nFor PASS:\n\n```markdown\nPASS\nConfidence: High|Medium|Low\n\n# Phase Critic: {verification_target}\n\n## Claims Audit\n\n### 1. <claim text>\n- **Evidence:** <exact proof>\n- **Evidence priority:** <1-6>\n- **Verdict:** verified\n\n### 2. <claim text>\n- **Evidence:** <exact proof>\n- **Evidence priority:** <1-6>\n- **Verdict:** partially_verified\n- **Gap:** <what is missing>\n\n...\n\n## Contradictions Searched\n- <areas searched and findings — none or description>\n\n## High-Risk Areas Reviewed\n- <list of high-risk areas and their verdict>\n\n## Confidence Rationale\n- <why High|Medium|Low>\n\n## Recommended Human Checks\n- <things that cannot be proven from code or available tools>\n```\n\nFor FAIL:\n\n```markdown\nFAIL\nConfidence: High|Medium|Low\nFailure class: <class>\n\n# Phase Critic: {verification_target}\n\n## Blocking Issues\n1. <claim that failed>: <why, what evidence contradicts it>\n2. <additional blocking claim>: <why, what evidence contradicts it>\n\n## Retry Guidance\n- <what to fix before retrying, informed by failure class>\n\n## Claims Audit\n...\n\n## Diagnostic Artifacts\n- <paths to any produced artifacts (bug reports, etc.)>\n```\n\n6. If in plan mode (native plan mode prevents file writes): present the verdict conversationally in chat instead of writing to file. Include all sections above.\n\n**Output:** Verdict file written to `$KAIROS_WORK_DIR/{verdict_file}`, or conversational verdict in plan mode.\n\n```json\n{\"challenge\":{\"type\":\"shell\",\"shell\":{\"cmd\":\"test -f \\\"$KAIROS_WORK_DIR/$CRITIC_VERDICT_FILE\\\" && head -1 \\\"$KAIROS_WORK_DIR/$CRITIC_VERDICT_FILE\\\" | grep -qiE '^(PASS|FAIL)' && head -2 \\\"$KAIROS_WORK_DIR/$CRITIC_VERDICT_FILE\\\" | tail -1 | grep -qi 'confidence' && echo 'Verdict file valid'\",\"timeout_seconds\":5},\"required\":true}}\n```\n\n## Reward Signal\n\nOnly reachable after all prior steps are solved.\n\nThis protocol is complete when:\n1. Preconditions checked — either verified or early-aborted with `verification_blocked`.\n2. Claims extracted under the extraction contract from reference document and invariants.\n3. Each claim investigated with scope discipline using the evidence hierarchy.\n4. CLAIM → EVIDENCE → VERDICT produced for every extracted claim.\n5. Contradictory evidence search performed for every claim.\n6. Overall verdict (`PASS` or `FAIL`) determined with confidence level.\n7. On FAIL: failure class assigned, diagnostic artifacts produced, retry guidance included.\n8. Verdict file written (agent mode) or conversational verdict presented (plan mode).\n"
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package/dist/resources/embedded-mcp-resources.js.map

@@ -1 +1 @@
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+{"version":3,"file":"embedded-mcp-resources.js","sourceRoot":"","sources":["../../src/resources/embedded-mcp-resources.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,MAAM,CAAC,MAAM,YAAY,GAAG;IAC1B,SAAS,EAAE;QACT,mBAAmB,EAAE,olEAAolE;KAC1mE;IACD,WAAW,EAAE;QACX,2BAA2B,EAAE,81GAA81G;KAC53G;IACD,WAAW,EAAE,EAAE;IACf,OAAO,EAAE;QACP,UAAU,EAAE,s6DAAs6D;QACl7D,QAAQ,EAAE,6dAA6d;QACve,QAAQ,EAAE,o1CAAo1C;QAC91C,SAAS,EAAE,s8EAAs8E;QACj9E,QAAQ,EAAE,8yBAA8yB;QACxzB,QAAQ,EAAE,wvDAAwvD;QAClwD,OAAO,EAAE,okDAAokD;QAC7kD,MAAM,EAAE,69BAA69B;KACt+B;IACD,KAAK,EAAE,EAAE;IACT,MAAM,EAAE;QACN,qBAAqB,EAAE,m5fAAm5f;QAC16f,eAAe,EAAE,w7EAAw7E;QACz8E,4BAA4B,EAAE,wvTAAwvT;QACtxT,sBAAsB,EAAE,+/XAA+/X;QACvhY,cAAc,EAAE,ogeAAoge;KACrhe;CACF,CAAC;AAEF;;GAEG;AACH,MAAM,UAAU,UAAU;IACxB,OAAO,YAAY,CAAC,OAAO,IAAI,EAAE,CAAC;AACpC,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,YAAY;IAC1B,OAAO,YAAY,CAAC,SAAS,IAAI,EAAE,CAAC;AACtC,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,YAAY;IAC1B,OAAO,YAAY,CAAC,SAAS,IAAI,EAAE,CAAC;AACtC,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,QAAQ;IACtB,OAAO,YAAY,CAAC,KAAK,IAAI,EAAE,CAAC;AAClC,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,MAAM;IACpB,OAAO,YAAY,CAAC,GAAG,IAAI,EAAE,CAAC;AAChC,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,OAAO;IACrB,OAAO,YAAY,CAAC,IAAI,IAAI,EAAE,CAAC;AACjC,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,SAAS,CAAC,GAAW;IACnC,MAAM,OAAO,GAAG,CAAC,YAAY,CAAC,OAAO,IAAI,EAAE,CAA2B,CAAC;IACvE,OAAO,OAAO,CAAC,GAAG,CAAC,CAAC;AACtB,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,WAAW,CAAC,GAAW;IACrC,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;IAC7B,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,MAAM,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAC9C,MAAM,IAAI,GAAG,CAAC,YAAY,CAAC,IAAI,IAAI,EAAE,CAA2B,CAAC;QACjE,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,CAAE,CAAC,CAAC;IACzB,CAAC;IACD,MAAM,SAAS,GAAG,CAAC,YAAY,CAAC,SAAS,IAAI,EAAE,CAAwB,CAAC;IACxE,IAAI,OAAO,GAAQ,SAAS,CAAC;IAC7B,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,IAAI,OAAO,IAAI,OAAO,OAAO,KAAK,QAAQ,EAAE,CAAC;YAC3C,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;QAC1B,CAAC;aAAM,CAAC;YACN,OAAO,SAAS,CAAC;QACnB,CAAC;IACH,CAAC;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,UAAU,CAAC,IAAY;IACrC,MAAM,IAAI,GAAG,CAAC,YAAY,CAAC,IAAI,IAAI,EAAE,CAA2B,CAAC;IACjE,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC;AACpB,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,WAAW,CAAC,GAAW;IACrC,MAAM,SAAS,GAAG,CAAC,YAAY,CAAC,SAAS,IAAI,EAAE,CAA2B,CAAC;IAC3E,OAAO,SAAS,CAAC,GAAG,CAAC,CAAC;AACxB,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,UAAU,CAAC,GAAW;IACpC,MAAM,KAAK,GAAG,CAAC,YAAY,CAAC,KAAK,IAAI,EAAE,CAA2B,CAAC;IACnE,OAAO,KAAK,CAAC,GAAG,CAAC,CAAC;AACpB,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,gBAAgB;IAC9B,MAAM,OAAO,GAAG,MAAM,CAAC,IAAI,CAAC,CAAC,YAAY,CAAC,OAAO,IAAI,EAAE,CAA4B,CAAC,CAAC;IACrF,MAAM,SAAS,GAAG,cAAc,CAAC,CAAC,YAAY,CAAC,SAAS,IAAI,EAAE,CAA4B,CAAC,CAAC;IAC5F,MAAM,SAAS,GAAG,MAAM,CAAC,IAAI,CAAC,CAAC,YAAY,CAAC,SAAS,IAAI,EAAE,CAA4B,CAAC,CAAC;IACzF,MAAM,KAAK,GAAG,MAAM,CAAC,IAAI,CAAC,CAAC,YAAY,CAAC,KAAK,IAAI,EAAE,CAA4B,CAAC,CAAC;IAEjF,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,CAAC,YAAY,CAAC,IAAI,IAAI,EAAE,CAA4B,CAAC,CAAC;IAC/E,MAAM,MAAM,GAA6B,EAAE,OAAO,EAAE,SAAS,EAAE,SAAS,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC;IAExF,qCAAqC;IACrC,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,EAAE,CAAC;QACxD,IAAI,CAAC,CAAC,SAAS,EAAE,WAAW,EAAE,WAAW,EAAE,OAAO,EAAE,MAAM,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;YAC1E,IAAI,OAAO,KAAK,KAAK,QAAQ,IAAI,KAAK,KAAK,IAAI,EAAE,CAAC;gBAChD,MAAM,CAAC,GAAG,CAAC,GAAG,MAAM,CAAC,IAAI,CAAC,KAAgC,CAAC,CAAC;YAC9D,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,SAAS,cAAc,CAAC,GAAQ,EAAE,SAAiB,EAAE,EAAE,OAAiB,EAAE;IACxE,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;QAC/C,MAAM,OAAO,GAAG,MAAM,CAAC,CAAC,CAAC,GAAG,MAAM,IAAI,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC;QAClD,IAAI,OAAO,KAAK,KAAK,QAAQ,EAAE,CAAC;YAC9B,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;QACrB,CAAC;aAAM,IAAI,OAAO,KAAK,KAAK,QAAQ,IAAI,KAAK,KAAK,IAAI,EAAE,CAAC;YACvD,cAAc,CAAC,KAAK,EAAE,OAAO,EAAE,IAAI,CAAC,CAAC;QACvC,CAAC;IACH,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC"}

package/dist/services/memory/activation-pattern-payload.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"activation-pattern-payload.d.ts","sourceRoot":"","sources":["../../../src/services/memory/activation-pattern-payload.ts"],"names":[],"mappings":"AAAA,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,OAAO,GAAG,MAAM,EAAE,CAO9E;AAqED,wBAAgB,kCAAkC,CAAC,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,MAAM,EAAE,CAS7F;AAED,wBAAgB,iCAAiC,CAAC,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG;IACnF,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjC,OAAO,EAAE,OAAO,CAAC;IACjB,iBAAiB,EAAE,MAAM,EAAE,CAAC;CAC7B,CAiCA"}
+{"version":3,"file":"activation-pattern-payload.d.ts","sourceRoot":"","sources":["../../../src/services/memory/activation-pattern-payload.ts"],"names":[],"mappings":"AAAA,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,OAAO,GAAG,MAAM,EAAE,CAO9E;AA4ED,wBAAgB,kCAAkC,CAAC,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,MAAM,EAAE,CAS7F;AAED,wBAAgB,iCAAiC,CAAC,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG;IACnF,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjC,OAAO,EAAE,OAAO,CAAC;IACjB,iBAAiB,EAAE,MAAM,EAAE,CAAC;CAC7B,CAiCA"}

package/dist/services/memory/activation-pattern-payload.js

@@ -24,7 +24,10 @@ function buildCanonicalAdapterPayload(payload, canonicalPatterns) {
     const protocolVersion = typeof adapter['protocol_version'] === 'string'
         ? adapter['protocol_version']
         : undefined;
+    const passthroughEntries = Object.entries(adapter).filter(([key]) => !['id', 'name', 'layer_index', 'layer_count', 'protocol_version', 'activation_patterns'].includes(key));
+    const passthroughAdapterFields = Object.fromEntries(passthroughEntries);
     return {
+        ...passthroughAdapterFields,
         id,
         name,
         layer_index: layerIndex,