@de-otio/bibcheck 0.1.0

package/dist/check.js.map

@@ -0,0 +1 @@
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package/dist/cli.d.ts

@@ -0,0 +1,19 @@
+#!/usr/bin/env node
+/**
+ * bibcheck CLI entry point.
+ *
+ * Exports `buildProgram()` so tests can import and exercise the parser
+ * without spawning a subprocess. The `isMain` guard at the bottom drives
+ * the actual binary.
+ */
+import { Command } from 'commander';
+import type { Config } from './config.js';
+/**
+ * Build the polite-pool User-Agent. Includes a `mailto:` from whichever email
+ * is configured (preferring crossref_mailto, then openalex_mailto) so the
+ * project stays in the providers' polite pools and is throttled less. Exported
+ * for testing.
+ */
+export declare function buildUserAgent(config: Config): string;
+export declare function buildProgram(): Command;
+//# sourceMappingURL=cli.d.ts.map

package/dist/cli.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AACA;;;;;;GAMG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAOpC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAkD1C;;;;;GAKG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAKrD;AAmQD,wBAAgB,YAAY,IAAI,OAAO,CAoFtC"}

package/dist/cli.js

@@ -0,0 +1,357 @@
+#!/usr/bin/env node
+/**
+ * bibcheck CLI entry point.
+ *
+ * Exports `buildProgram()` so tests can import and exercise the parser
+ * without spawning a subprocess. The `isMain` guard at the bottom drives
+ * the actual binary.
+ */
+import { Command } from 'commander';
+import { writeFile } from 'node:fs/promises';
+import { realpathSync } from 'node:fs';
+import * as readline from 'node:readline';
+import { fileURLToPath } from 'node:url';
+import { loadConfig, ConfigError } from './config.js';
+import { buildCheckDeps, runCheck, checkExitReasons, buildSuppressionContext } from './check.js';
+import { createMemoryCache } from './cache/fs-cache.js';
+import { createHttpClient, isPrivateApiBase } from './http.js';
+import { renderJson } from './output/json.js';
+import { renderMarkdown } from './output/markdown.js';
+import { renderSarif } from './output/sarif.js';
+import { renderText } from './output/text.js';
+import { VERSION, USER_AGENT_BASE } from './version.js';
+const ALL_SUBCOMMANDS = [
+    'existence',
+    'canonical',
+    'linkage',
+    'phrases',
+    'worklist',
+];
+const VALID_FORMATS = ['json', 'markdown', 'sarif', 'text'];
+// ---------------------------------------------------------------------------
+// Helpers
+// ---------------------------------------------------------------------------
+/**
+ * Build the polite-pool User-Agent. Includes a `mailto:` from whichever email
+ * is configured (preferring crossref_mailto, then openalex_mailto) so the
+ * project stays in the providers' polite pools and is throttled less. Exported
+ * for testing.
+ */
+export function buildUserAgent(config) {
+    const mailto = config.apis.crossref_mailto ?? config.apis.openalex_mailto ?? null;
+    return mailto != null && mailto !== ''
+        ? `${USER_AGENT_BASE} (mailto:${mailto})`
+        : USER_AGENT_BASE;
+}
+function buildLogger() {
+    return {
+        info: (_event, _ctx) => {
+            // no-op for info in production; stderr trace would go here
+        },
+        warn: (event, ctx) => {
+            process.stderr.write(`warn: ${event}${ctx != null ? ' ' + JSON.stringify(ctx) : ''}\n`);
+        },
+        error: (event, ctx) => {
+            process.stderr.write(`error: ${event}${ctx != null ? ' ' + JSON.stringify(ctx) : ''}\n`);
+        },
+    };
+}
+function defaultFormat() {
+    return process.stdout.isTTY ? 'text' : 'markdown';
+}
+function renderOutput(output, format) {
+    switch (format) {
+        case 'json':
+            return renderJson(output);
+        case 'markdown':
+            return renderMarkdown(output);
+        case 'sarif':
+            return renderSarif(output);
+        case 'text':
+        default:
+            return renderText(output);
+    }
+}
+function validateFormat(value) {
+    if (!VALID_FORMATS.includes(value)) {
+        throw new Error(`Invalid format "${value}". Must be one of: ${VALID_FORMATS.join(', ')}.`);
+    }
+    return value;
+}
+async function writeOutput(content, outputPath) {
+    if (outputPath != null && outputPath !== '') {
+        await writeFile(outputPath, content, 'utf-8');
+    }
+    else {
+        process.stdout.write(content);
+    }
+}
+// ---------------------------------------------------------------------------
+// SIGINT / AbortController
+// ---------------------------------------------------------------------------
+function setupAbortController() {
+    const controller = new AbortController();
+    process.on('SIGINT', () => {
+        controller.abort();
+        process.stderr.write('aborting...\n');
+    });
+    return controller;
+}
+// ---------------------------------------------------------------------------
+// check / per-subcommand shared logic
+// ---------------------------------------------------------------------------
+async function runCheckCommand(opts, skip) {
+    const controller = setupAbortController();
+    const logger = buildLogger();
+    const cwd = opts.cwd;
+    let config;
+    try {
+        config = await loadConfig({ path: opts.config, cwd });
+    }
+    catch (err) {
+        if (err instanceof ConfigError) {
+            process.stderr.write(`bibcheck: config error: ${err.message}\n`);
+            process.exit(2);
+        }
+        throw err;
+    }
+    const userAgent = buildUserAgent(config);
+    let deps = await buildCheckDeps({
+        config,
+        cwd,
+        signal: controller.signal,
+        logger,
+        userAgent,
+    });
+    if (opts.noCache === true) {
+        deps = { ...deps, cache: createMemoryCache() };
+    }
+    if (skip != null) {
+        deps = { ...deps, skip };
+    }
+    const output = await runCheck(deps);
+    const format = opts.format ?? defaultFormat();
+    const rendered = renderOutput(output, format);
+    await writeOutput(rendered, opts.output);
+    // T23: pass the suppression context (source-type exemptions + per-entry
+    // bibcheck-allow notes) so a legitimately-unverifiable source can be
+    // suppressed without disabling the gate. Suppressed findings stay in the
+    // rendered output; they just don't drive the exit code.
+    const suppression = buildSuppressionContext(config, deps.bibliography);
+    const reasons = checkExitReasons(output, suppression);
+    if (reasons.length > 0) {
+        process.exit(1);
+    }
+}
+// ---------------------------------------------------------------------------
+// doctor command
+// ---------------------------------------------------------------------------
+async function runDoctorCommand(opts) {
+    const controller = setupAbortController();
+    const cwd = opts.cwd;
+    let config;
+    try {
+        config = await loadConfig({ path: opts.config, cwd });
+    }
+    catch (err) {
+        if (err instanceof ConfigError) {
+            process.stderr.write(`bibcheck: config error: ${err.message}\n`);
+            process.exit(2);
+        }
+        throw err;
+    }
+    // Clear-cache confirmation
+    if (opts.clearCache === true && opts.yes !== true) {
+        const confirmed = await promptYesNo('Clear the cache directory? [y/N] ');
+        if (!confirmed) {
+            process.exit(0);
+        }
+    }
+    // Honor an operator who explicitly points an API base at a private/loopback
+    // host (local stub/mirror); see buildCheckDeps for the rationale.
+    const allowPrivateHosts = isPrivateApiBase(config.apis.crossref_base) ||
+        isPrivateApiBase(config.apis.openalex_base) ||
+        isPrivateApiBase(config.apis.openlibrary_base);
+    const http = createHttpClient({ userAgent: buildUserAgent(config), allowPrivateHosts });
+    // Doctor module is implemented by T14 concurrently. Import dynamically so
+    // that compilation succeeds even if the file is not yet finalised, and fall
+    // back gracefully if the module does not export runDoctor.
+    let runDoctor;
+    try {
+        const doctorMod = await import('./doctor.js');
+        if (typeof doctorMod['runDoctor'] === 'function') {
+            runDoctor = doctorMod['runDoctor'];
+        }
+    }
+    catch {
+        // doctor.ts not yet available
+    }
+    if (runDoctor == null) {
+        process.stderr.write('bibcheck doctor: doctor module not yet available\n');
+        process.exit(1);
+    }
+    const result = await runDoctor({
+        config,
+        cwd,
+        http,
+        signal: controller.signal,
+        clearCache: opts.clearCache ?? false,
+    });
+    for (const check of result.checks) {
+        process.stdout.write(`${check.status}  ${check.name}  ${check.message}\n`);
+    }
+    if (!result.ok) {
+        process.exit(1);
+    }
+}
+// ---------------------------------------------------------------------------
+// readline prompt helper
+// ---------------------------------------------------------------------------
+async function promptYesNo(question) {
+    return new Promise((resolve) => {
+        const rl = readline.createInterface({
+            input: process.stdin,
+            output: process.stdout,
+        });
+        rl.question(question, (answer) => {
+            rl.close();
+            resolve(answer.trim().toLowerCase() === 'y');
+        });
+    });
+}
+// ---------------------------------------------------------------------------
+// addGlobalOptions — attaches the shared flags to any Command
+// ---------------------------------------------------------------------------
+function addGlobalOptions(cmd) {
+    return cmd
+        .option('--config <path>', 'path to bibcheck.toml', 'bibcheck.toml')
+        .option('--format <format>', 'output format: json, markdown, sarif, text', (value) => {
+        const validated = validateFormat(value);
+        return validated;
+    })
+        .option('--output <path>', 'write output to file instead of stdout')
+        .option('--no-cache', 'disable cache (use in-memory cache)')
+        .option('--cwd <path>', 'working directory', process.cwd());
+}
+// ---------------------------------------------------------------------------
+// resolveGlobalOpts — extract + validate options from a Command instance
+// ---------------------------------------------------------------------------
+function resolveGlobalOpts(cmd) {
+    const opts = cmd.opts();
+    const format = opts.format != null
+        ? validateFormat(opts.format)
+        : defaultFormat();
+    return {
+        config: opts.config,
+        format,
+        output: opts.output,
+        noCache: opts.cache === false,
+        cwd: opts.cwd,
+    };
+}
+// ---------------------------------------------------------------------------
+// buildProgram — the testable export
+// ---------------------------------------------------------------------------
+export function buildProgram() {
+    const program = new Command();
+    program
+        .name('bibcheck')
+        .description('Humanities-aware citation verification for CSL-JSON bibliographies.')
+        .version(VERSION, '-V, --version', 'print version and exit');
+    // ---- check ----
+    const checkCmd = new Command('check')
+        .description('Run all checks (existence, canonical, linkage, phrases, worklist). CI build-gate.');
+    addGlobalOptions(checkCmd);
+    checkCmd.action(async () => {
+        const opts = resolveGlobalOpts(checkCmd);
+        try {
+            await runCheckCommand(opts);
+        }
+        catch (err) {
+            const msg = err instanceof Error ? err.message : String(err);
+            process.stderr.write(`bibcheck error: ${msg}\n`);
+            process.exit(1);
+        }
+    });
+    program.addCommand(checkCmd);
+    // ---- per-subcommand variants ----
+    const subDefs = [
+        { name: 'canonical', description: 'Run only canonical-edition URL verification.' },
+        { name: 'existence', description: 'Run only existence checks against bibliographic databases.' },
+        { name: 'linkage', description: 'Run only citekey linkage check.' },
+        { name: 'phrases', description: 'Run only the phrase-denylist lint.' },
+        { name: 'worklist', description: 'Run only worklist generation.' },
+    ];
+    for (const sub of subDefs) {
+        const subCmd = new Command(sub.name).description(sub.description);
+        addGlobalOptions(subCmd);
+        // Capture sub.name in closure
+        const subName = sub.name;
+        subCmd.action(async () => {
+            const opts = resolveGlobalOpts(subCmd);
+            const skip = new Set(ALL_SUBCOMMANDS.filter((s) => s !== subName));
+            try {
+                await runCheckCommand(opts, skip);
+            }
+            catch (err) {
+                const msg = err instanceof Error ? err.message : String(err);
+                process.stderr.write(`bibcheck error: ${msg}\n`);
+                process.exit(1);
+            }
+        });
+        program.addCommand(subCmd);
+    }
+    // ---- doctor ----
+    const doctorCmd = new Command('doctor')
+        .description('Run onboarding diagnostics to verify configuration and connectivity.');
+    addGlobalOptions(doctorCmd);
+    doctorCmd
+        .option('--clear-cache', 'clear the cache directory before running checks')
+        .option('--yes', 'skip the clear-cache confirmation prompt');
+    doctorCmd.action(async () => {
+        const globalOpts = resolveGlobalOpts(doctorCmd);
+        const doctorSpecific = doctorCmd.opts();
+        const opts = {
+            ...globalOpts,
+            clearCache: doctorSpecific.clearCache,
+            yes: doctorSpecific.yes,
+        };
+        try {
+            await runDoctorCommand(opts);
+        }
+        catch (err) {
+            const msg = err instanceof Error ? err.message : String(err);
+            process.stderr.write(`bibcheck error: ${msg}\n`);
+            process.exit(1);
+        }
+    });
+    program.addCommand(doctorCmd);
+    // Default action: show help and exit 1 when no subcommand given
+    program.action(() => {
+        program.outputHelp();
+        process.exit(1);
+    });
+    return program;
+}
+// ---------------------------------------------------------------------------
+// Binary entry point
+// ---------------------------------------------------------------------------
+function isMainModule() {
+    const argv1 = process.argv[1];
+    if (!argv1)
+        return false;
+    try {
+        return realpathSync(fileURLToPath(import.meta.url)) === realpathSync(argv1);
+    }
+    catch {
+        return import.meta.url === `file://${argv1}`;
+    }
+}
+if (isMainModule()) {
+    buildProgram().parseAsync(process.argv).catch((err) => {
+        const msg = err instanceof Error ? err.message : String(err);
+        process.stderr.write(`bibcheck error: ${msg}\n`);
+        process.exit(1);
+    });
+}
+//# sourceMappingURL=cli.js.map

package/dist/cli.js.map

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package/dist/config.d.ts

@@ -0,0 +1,175 @@
+/**
+ * bibcheck configuration schema and loader.
+ *
+ * Reads `bibcheck.toml` from the project root, validates it against the
+ * Zod schema, and returns a frozen typed Config. Returns defaults when no
+ * config file is present.
+ */
+import { z } from 'zod';
+/**
+ * Effective default base URLs for the bibliographic database APIs. These are
+ * the real public endpoints used whenever the corresponding `[apis] *_base`
+ * config field is omitted. (WorldCat / OCLC Classify was removed in 0.2.0.)
+ */
+export declare const API_BASE_DEFAULTS: {
+    readonly crossref: "https://api.crossref.org";
+    readonly openalex: "https://api.openalex.org";
+    readonly openlibrary: "https://openlibrary.org";
+};
+export declare const ConfigSchema: z.ZodObject<{
+    bibliography: z.ZodDefault<z.ZodObject<{
+        file: z.ZodDefault<z.ZodString>;
+    }, "strip", z.ZodTypeAny, {
+        file: string;
+    }, {
+        file?: string | undefined;
+    }>>;
+    docs: z.ZodDefault<z.ZodObject<{
+        include: z.ZodDefault<z.ZodArray<z.ZodString, "many">>;
+        exclude: z.ZodDefault<z.ZodArray<z.ZodString, "many">>;
+    }, "strip", z.ZodTypeAny, {
+        include: string[];
+        exclude: string[];
+    }, {
+        include?: string[] | undefined;
+        exclude?: string[] | undefined;
+    }>>;
+    trusted_hosts: z.ZodDefault<z.ZodObject<{
+        hosts: z.ZodDefault<z.ZodArray<z.ZodString, "many">>;
+    }, "strip", z.ZodTypeAny, {
+        hosts: string[];
+    }, {
+        hosts?: string[] | undefined;
+    }>>;
+    phrases: z.ZodDefault<z.ZodObject<{
+        file: z.ZodDefault<z.ZodNullable<z.ZodString>>;
+    }, "strip", z.ZodTypeAny, {
+        file: string | null;
+    }, {
+        file?: string | null | undefined;
+    }>>;
+    source_types: z.ZodDefault<z.ZodRecord<z.ZodString, z.ZodObject<{
+        warn_load_bearing: z.ZodOptional<z.ZodBoolean>;
+        allow_load_bearing: z.ZodOptional<z.ZodBoolean>;
+        /**
+         * T23 — source-type gating rule. When `false`, a `not-found-in-databases`
+         * (unverifiable-absence) result for an entry of this CSL type does NOT gate
+         * `bibcheck check` — e.g. a pre-DOI manuscript / archival source for which no
+         * DOI was ever expected. The finding is still reported (informational), never
+         * dropped. Omitted / `true` ⇒ the Q1 secure default (gate). Governs only the
+         * not-found gate; malformed identifiers, canonical issues, and metadata
+         * mismatches always gate (use a per-entry `bibcheck-allow` note for those).
+         */
+        gate_not_found: z.ZodOptional<z.ZodBoolean>;
+    }, "strip", z.ZodTypeAny, {
+        warn_load_bearing?: boolean | undefined;
+        allow_load_bearing?: boolean | undefined;
+        gate_not_found?: boolean | undefined;
+    }, {
+        warn_load_bearing?: boolean | undefined;
+        allow_load_bearing?: boolean | undefined;
+        gate_not_found?: boolean | undefined;
+    }>>>;
+    edition_discipline: z.ZodDefault<z.ZodRecord<z.ZodString, z.ZodString>>;
+    apis: z.ZodDefault<z.ZodObject<{
+        crossref_mailto: z.ZodDefault<z.ZodNullable<z.ZodString>>;
+        openalex_mailto: z.ZodDefault<z.ZodNullable<z.ZodString>>;
+        crossref_base: z.ZodOptional<z.ZodString>;
+        openalex_base: z.ZodOptional<z.ZodString>;
+        openlibrary_base: z.ZodOptional<z.ZodString>;
+    }, "strip", z.ZodTypeAny, {
+        crossref_mailto: string | null;
+        openalex_mailto: string | null;
+        crossref_base?: string | undefined;
+        openalex_base?: string | undefined;
+        openlibrary_base?: string | undefined;
+    }, {
+        crossref_mailto?: string | null | undefined;
+        openalex_mailto?: string | null | undefined;
+        crossref_base?: string | undefined;
+        openalex_base?: string | undefined;
+        openlibrary_base?: string | undefined;
+    }>>;
+    cache: z.ZodDefault<z.ZodObject<{
+        dir: z.ZodDefault<z.ZodString>;
+        max_size_mb: z.ZodDefault<z.ZodNullable<z.ZodNumber>>;
+    }, "strip", z.ZodTypeAny, {
+        dir: string;
+        max_size_mb: number | null;
+    }, {
+        dir?: string | undefined;
+        max_size_mb?: number | null | undefined;
+    }>>;
+}, "strip", z.ZodTypeAny, {
+    cache: {
+        dir: string;
+        max_size_mb: number | null;
+    };
+    bibliography: {
+        file: string;
+    };
+    docs: {
+        include: string[];
+        exclude: string[];
+    };
+    trusted_hosts: {
+        hosts: string[];
+    };
+    phrases: {
+        file: string | null;
+    };
+    source_types: Record<string, {
+        warn_load_bearing?: boolean | undefined;
+        allow_load_bearing?: boolean | undefined;
+        gate_not_found?: boolean | undefined;
+    }>;
+    edition_discipline: Record<string, string>;
+    apis: {
+        crossref_mailto: string | null;
+        openalex_mailto: string | null;
+        crossref_base?: string | undefined;
+        openalex_base?: string | undefined;
+        openlibrary_base?: string | undefined;
+    };
+}, {
+    cache?: {
+        dir?: string | undefined;
+        max_size_mb?: number | null | undefined;
+    } | undefined;
+    bibliography?: {
+        file?: string | undefined;
+    } | undefined;
+    docs?: {
+        include?: string[] | undefined;
+        exclude?: string[] | undefined;
+    } | undefined;
+    trusted_hosts?: {
+        hosts?: string[] | undefined;
+    } | undefined;
+    phrases?: {
+        file?: string | null | undefined;
+    } | undefined;
+    source_types?: Record<string, {
+        warn_load_bearing?: boolean | undefined;
+        allow_load_bearing?: boolean | undefined;
+        gate_not_found?: boolean | undefined;
+    }> | undefined;
+    edition_discipline?: Record<string, string> | undefined;
+    apis?: {
+        crossref_mailto?: string | null | undefined;
+        openalex_mailto?: string | null | undefined;
+        crossref_base?: string | undefined;
+        openalex_base?: string | undefined;
+        openlibrary_base?: string | undefined;
+    } | undefined;
+}>;
+export type Config = z.infer<typeof ConfigSchema>;
+export declare class ConfigError extends Error {
+    constructor(message: string);
+}
+export interface LoadConfigOptions {
+    path?: string;
+    cwd?: string;
+}
+export declare function loadConfig(opts?: LoadConfigOptions): Promise<Config>;
+//# sourceMappingURL=config.d.ts.map

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