@datalayer/jupyter-react 1.1.9 → 1.2.0

package/lib/jupyter/lite/pyodide-kernel/tokens.d.ts

@@ -0,0 +1,82 @@
+/**
+ * Definitions for the Pyodide kernel.
+ */
+import { TDriveMethod, TDriveRequest, TDriveResponse } from '@jupyterlite/contents';
+import { IWorkerKernel } from '@jupyterlite/kernel';
+/**
+ * The schema for a Warehouse-like index, as used by piplite.
+ */
+export * as PIPLITE_INDEX_SCHEMA from './schema/piplite.v0.schema.json';
+/**
+ * An interface for Pyodide workers.
+ */
+export interface IPyodideWorkerKernel extends IWorkerKernel {
+    /**
+     * Handle any lazy initialization activities.
+     */
+    initialize(options: IPyodideWorkerKernel.IOptions): Promise<void>;
+    /**
+     * Process drive request
+     * @param data
+     */
+    processDriveRequest<T extends TDriveMethod>(data: TDriveRequest<T>): TDriveResponse<T>;
+    /**
+     * Process worker message
+     * @param msg
+     */
+    processWorkerMessage(msg: any): void;
+    /**
+     * Register a callback for handling messages from the worker.
+     */
+    registerCallback(callback: (msg: any) => void): void;
+}
+/**
+ * Deprecated.
+ */
+export type IRemotePyodideWorkerKernel = IPyodideWorkerKernel;
+/**
+ * An namespace for Pyodide workers.
+ */
+export declare namespace IPyodideWorkerKernel {
+    /**
+     * Initialization options for a worker.
+     */
+    interface IOptions extends IWorkerKernel.IOptions {
+        /**
+         * The URL of the main `pyodide.js` file in the standard pyodide layout.
+         */
+        pyodideUrl: string;
+        /**
+         * The URL of a pyodide index file in the standard pyodide layout.
+         */
+        indexUrl: string;
+        /**
+         * The URL of the `piplite` wheel for bootstrapping.
+         */
+        pipliteWheelUrl: string;
+        /**
+         * The URLs of additional warehouse-like wheel listings.
+         */
+        pipliteUrls: string[];
+        /**
+         * Whether `piplite` should fall back to the hard-coded `pypi.org` for resolving packages.
+         */
+        disablePyPIFallback: boolean;
+        /**
+         * The current working directory in which to start the kernel.
+         */
+        location: string;
+        /**
+         * Whether or not to mount the Emscripten drive
+         */
+        mountDrive: boolean;
+        /**
+         * additional options to provide to `loadPyodide`
+         * @see https://pyodide.org/en/stable/usage/api/js-api.html#globalThis.loadPyodide
+         */
+        loadPyodideOptions: Record<string, any> & {
+            lockFileURL: string;
+            packages: string[];
+        };
+    }
+}

package/lib/jupyter/lite/pyodide-kernel/tokens.js

@@ -0,0 +1,8 @@
+// Copyright (c) Jupyter Development Team.
+// Distributed under the terms of the Modified BSD License.
+/**
+ * The schema for a Warehouse-like index, as used by piplite.
+ */
+// @ts-expect-error - JSON import is not typed
+export * as PIPLITE_INDEX_SCHEMA from './schema/piplite.v0.schema.json';
+//# sourceMappingURL=tokens.js.map

package/lib/jupyter/lite/pyodide-kernel/tokens.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"tokens.js","sourceRoot":"","sources":["../../../../src/jupyter/lite/pyodide-kernel/tokens.ts"],"names":[],"mappings":"AAAA,0CAA0C;AAC1C,2DAA2D;AAa3D;;GAEG;AACH,8CAA8C;AAC9C,OAAO,KAAK,oBAAoB,MAAM,iCAAiC,CAAC"}

package/lib/jupyter/lite/pyodide-kernel/worker.d.ts

@@ -0,0 +1,138 @@
+import type Pyodide from 'pyodide';
+import type { DriveFS } from '@jupyterlite/contents';
+import { KernelMessage } from '@jupyterlab/services';
+import type { IPyodideWorkerKernel } from './tokens';
+export declare class PyodideRemoteKernel {
+    constructor();
+    /**
+     * Accept the URLs from the host
+     **/
+    initialize(options: IPyodideWorkerKernel.IOptions): Promise<void>;
+    protected initRuntime(options: IPyodideWorkerKernel.IOptions): Promise<void>;
+    protected initPackageManager(options: IPyodideWorkerKernel.IOptions): Promise<void>;
+    protected initKernel(options: IPyodideWorkerKernel.IOptions): Promise<void>;
+    protected initGlobals(options: IPyodideWorkerKernel.IOptions): Promise<void>;
+    /**
+     * Setup custom Emscripten FileSystem
+     */
+    protected initFilesystem(options: IPyodideWorkerKernel.IOptions): Promise<void>;
+    /**
+     * Recursively convert a Map to a JavaScript object
+     * @param obj A Map, Array, or other  object to convert
+     */
+    mapToObject(obj: any): any;
+    /**
+     * Format the response from the Pyodide evaluation.
+     *
+     * @param res The result object from the Pyodide evaluation
+     */
+    formatResult(res: any): any;
+    /**
+     * Register the callback function to send messages from the worker back to the main thread.
+     * @param callback the callback to register
+     */
+    registerCallback(callback: (msg: any) => void): void;
+    /**
+     * Makes sure pyodide is ready before continuing, and cache the parent message.
+     */
+    setup(parent: any): Promise<void>;
+    /**
+     * Execute code with the interpreter.
+     *
+     * @param content The incoming message with the code to execute.
+     */
+    execute(content: any, parent: any): Promise<any>;
+    /**
+     * Complete the code submitted by a user.
+     *
+     * @param content The incoming message with the code to complete.
+     */
+    complete(content: any, parent: any): Promise<any>;
+    /**
+     * Inspect the code submitted by a user.
+     *
+     * @param content The incoming message with the code to inspect.
+     */
+    inspect(content: {
+        code: string;
+        cursor_pos: number;
+        detail_level: 0 | 1;
+    }, parent: any): Promise<any>;
+    /**
+     * Check code for completeness submitted by a user.
+     *
+     * @param content The incoming message with the code to check.
+     */
+    isComplete(content: {
+        code: string;
+    }, parent: any): Promise<any>;
+    /**
+     * Respond to the commInfoRequest.
+     *
+     * @param content The incoming message with the comm target name.
+     */
+    commInfo(content: any, parent: any): Promise<KernelMessage.ICommInfoReplyMsg['content']>;
+    /**
+     * Respond to the commOpen.
+     *
+     * @param content The incoming message with the comm open.
+     */
+    commOpen(content: any, parent: any): Promise<any>;
+    /**
+     * Respond to the commMsg.
+     *
+     * @param content The incoming message with the comm msg.
+     */
+    commMsg(content: any, parent: any): Promise<any>;
+    /**
+     * Respond to the commClose.
+     *
+     * @param content The incoming message with the comm close.
+     */
+    commClose(content: any, parent: any): Promise<any>;
+    /**
+     * Resolve the input request by getting back the reply from the main thread
+     *
+     * @param content The incoming message with the reply
+     */
+    inputReply(content: any, parent: any): Promise<void>;
+    /**
+     * Send a input request to the front-end.
+     *
+     * @param prompt the text to show at the prompt
+     * @param password Is the request for a password?
+     */
+    sendInputRequest(prompt: string, password: boolean): Promise<void>;
+    getpass(prompt: string): Promise<any>;
+    input(prompt: string): Promise<any>;
+    /**
+     * Send a comm message to the front-end.
+     *
+     * @param type The type of the comm message.
+     * @param content The content.
+     * @param metadata The metadata.
+     * @param ident The ident.
+     * @param buffers The binary buffers.
+     */
+    sendComm(type: string, content: any, metadata: any, ident: any, buffers: any): Promise<void>;
+    /**
+     * Initialization options.
+     */
+    protected _options: IPyodideWorkerKernel.IOptions | null;
+    /**
+     * A promise that resolves when all initiaization is complete.
+     */
+    protected _initialized: Promise<void>;
+    private _initializer;
+    protected _pyodide: Pyodide.PyodideInterface;
+    /** TODO: real typing */
+    protected _localPath: string;
+    protected _driveName: string;
+    protected _kernel: any;
+    protected _interpreter: any;
+    protected _stdout_stream: any;
+    protected _stderr_stream: any;
+    protected _resolveInputReply: any;
+    protected _driveFS: DriveFS | null;
+    protected _sendWorkerMessage: (msg: any) => void;
+}

package/lib/jupyter/lite/pyodide-kernel/worker.js

@@ -0,0 +1,426 @@
+// Copyright (c) Jupyter Development Team.
+// Distributed under the terms of the Modified BSD License.
+export class PyodideRemoteKernel {
+    constructor() {
+        this._initialized = new Promise((resolve, reject) => {
+            this._initializer = { resolve, reject };
+        });
+    }
+    /**
+     * Accept the URLs from the host
+     **/
+    async initialize(options) {
+        this._options = options;
+        if (options.location.includes(':')) {
+            const parts = options.location.split(':');
+            this._driveName = parts[0];
+            this._localPath = parts[1];
+        }
+        else {
+            this._driveName = '';
+            this._localPath = options.location;
+        }
+        await this.initRuntime(options);
+        await this.initFilesystem(options);
+        await this.initPackageManager(options);
+        await this.initKernel(options);
+        await this.initGlobals(options);
+        this._initializer?.resolve();
+    }
+    async initRuntime(options) {
+        const { pyodideUrl, indexUrl } = options;
+        let loadPyodide;
+        // Always use dynamic import for module workers
+        // In module workers, importScripts exists but throws when called
+        // Dynamic import works for both .mjs and .js files in module workers
+        const pyodideModule = await import(
+        /* webpackIgnore: true */ /* @vite-ignore */ pyodideUrl);
+        // Pyodide may export loadPyodide directly, or set it on self (for non-ESM builds)
+        loadPyodide = pyodideModule.loadPyodide || self.loadPyodide;
+        if (typeof loadPyodide !== 'function') {
+            throw new Error(`Failed to load pyodide from ${pyodideUrl}. loadPyodide is not a function.`);
+        }
+        this._pyodide = await loadPyodide({
+            indexURL: indexUrl,
+            ...options.loadPyodideOptions,
+        });
+    }
+    async initPackageManager(options) {
+        if (!this._options) {
+            throw new Error('Uninitialized');
+        }
+        const { pipliteWheelUrl, disablePyPIFallback, pipliteUrls, loadPyodideOptions, } = this._options;
+        const preloaded = (loadPyodideOptions || {}).packages || [];
+        if (!preloaded.includes('micropip')) {
+            await this._pyodide.loadPackage(['micropip']);
+        }
+        if (!preloaded.includes('piplite')) {
+            await this._pyodide.runPythonAsync(`
+      import micropip
+      await micropip.install('${pipliteWheelUrl}', keep_going=True)
+    `);
+        }
+        // get piplite early enough to impact pyodide-kernel dependencies
+        await this._pyodide.runPythonAsync(`
+      import piplite.piplite
+      piplite.piplite._PIPLITE_DISABLE_PYPI = ${disablePyPIFallback ? 'True' : 'False'}
+      piplite.piplite._PIPLITE_URLS = ${JSON.stringify(pipliteUrls)}
+    `);
+    }
+    async initKernel(options) {
+        const preloaded = (options.loadPyodideOptions || {}).packages || [];
+        const toLoad = [
+            'ssl',
+            'sqlite3',
+            'ipykernel',
+            'comm',
+            'pyodide_kernel',
+            'ipython',
+        ];
+        const scriptLines = [];
+        // use piplite for packages that weren't pre-loaded
+        for (const pkgName of toLoad) {
+            if (!preloaded.includes(pkgName)) {
+                scriptLines.push(`await piplite.install('${pkgName}', keep_going=True)`);
+            }
+        }
+        // import the kernel
+        scriptLines.push('import pyodide_kernel');
+        // cd to the kernel location
+        if (options.mountDrive && this._localPath) {
+            scriptLines.push('import os', `os.chdir("${this._localPath}")`);
+        }
+        // from this point forward, only use piplite (but not %pip)
+        await this._pyodide.runPythonAsync(scriptLines.join('\n'));
+    }
+    async initGlobals(options) {
+        const { globals } = this._pyodide;
+        this._kernel = globals.get('pyodide_kernel').kernel_instance.copy();
+        this._stdout_stream = globals.get('pyodide_kernel').stdout_stream.copy();
+        this._stderr_stream = globals.get('pyodide_kernel').stderr_stream.copy();
+        this._interpreter = this._kernel.interpreter.copy();
+        this._interpreter.send_comm = this.sendComm.bind(this);
+    }
+    /**
+     * Setup custom Emscripten FileSystem
+     */
+    async initFilesystem(options) {
+        if (options.mountDrive) {
+            const mountpoint = '/drive';
+            const { FS, PATH, ERRNO_CODES } = this._pyodide;
+            const { baseUrl } = options;
+            const { DriveFS } = await import('@jupyterlite/contents');
+            const driveFS = new DriveFS({
+                FS: FS,
+                PATH,
+                ERRNO_CODES,
+                baseUrl,
+                driveName: this._driveName,
+                mountpoint,
+            });
+            FS.mkdirTree(mountpoint);
+            FS.mount(driveFS, {}, mountpoint);
+            FS.chdir(mountpoint);
+            this._driveFS = driveFS;
+        }
+    }
+    /**
+     * Recursively convert a Map to a JavaScript object
+     * @param obj A Map, Array, or other  object to convert
+     */
+    mapToObject(obj) {
+        const out = obj instanceof Array ? [] : {};
+        obj.forEach((value, key) => {
+            out[key] =
+                value instanceof Map || value instanceof Array
+                    ? this.mapToObject(value)
+                    : value;
+        });
+        return out;
+    }
+    /**
+     * Format the response from the Pyodide evaluation.
+     *
+     * @param res The result object from the Pyodide evaluation
+     */
+    formatResult(res) {
+        if (!(res instanceof this._pyodide.ffi.PyProxy)) {
+            return res;
+        }
+        // TODO: this is a bit brittle
+        const m = res.toJs();
+        const results = this.mapToObject(m);
+        return results;
+    }
+    /**
+     * Register the callback function to send messages from the worker back to the main thread.
+     * @param callback the callback to register
+     */
+    registerCallback(callback) {
+        this._sendWorkerMessage = callback;
+    }
+    /**
+     * Makes sure pyodide is ready before continuing, and cache the parent message.
+     */
+    async setup(parent) {
+        await this._initialized;
+        this._kernel._parent_header = this._pyodide.toPy(parent);
+    }
+    /**
+     * Execute code with the interpreter.
+     *
+     * @param content The incoming message with the code to execute.
+     */
+    async execute(content, parent) {
+        await this.setup(parent);
+        const publishExecutionResult = (prompt_count, data, metadata) => {
+            const bundle = {
+                execution_count: prompt_count,
+                data: this.formatResult(data),
+                metadata: this.formatResult(metadata),
+            };
+            this._sendWorkerMessage({
+                parentHeader: this.formatResult(this._kernel._parent_header)['header'],
+                bundle,
+                type: 'execute_result',
+            });
+        };
+        const publishExecutionError = (ename, evalue, traceback) => {
+            const bundle = {
+                ename: ename,
+                evalue: evalue,
+                traceback: traceback,
+            };
+            this._sendWorkerMessage({
+                parentHeader: this.formatResult(this._kernel._parent_header)['header'],
+                bundle,
+                type: 'execute_error',
+            });
+        };
+        const clearOutputCallback = (wait) => {
+            const bundle = {
+                wait: this.formatResult(wait),
+            };
+            this._sendWorkerMessage({
+                parentHeader: this.formatResult(this._kernel._parent_header)['header'],
+                bundle,
+                type: 'clear_output',
+            });
+        };
+        const displayDataCallback = (data, metadata, transient) => {
+            const bundle = {
+                data: this.formatResult(data),
+                metadata: this.formatResult(metadata),
+                transient: this.formatResult(transient),
+            };
+            this._sendWorkerMessage({
+                parentHeader: this.formatResult(this._kernel._parent_header)['header'],
+                bundle,
+                type: 'display_data',
+            });
+        };
+        const updateDisplayDataCallback = (data, metadata, transient) => {
+            const bundle = {
+                data: this.formatResult(data),
+                metadata: this.formatResult(metadata),
+                transient: this.formatResult(transient),
+            };
+            this._sendWorkerMessage({
+                parentHeader: this.formatResult(this._kernel._parent_header)['header'],
+                bundle,
+                type: 'update_display_data',
+            });
+        };
+        const publishStreamCallback = (name, text) => {
+            const bundle = {
+                name: this.formatResult(name),
+                text: this.formatResult(text),
+            };
+            this._sendWorkerMessage({
+                parentHeader: this.formatResult(this._kernel._parent_header)['header'],
+                bundle,
+                type: 'stream',
+            });
+        };
+        this._stdout_stream.publish_stream_callback = publishStreamCallback;
+        this._stderr_stream.publish_stream_callback = publishStreamCallback;
+        this._interpreter.display_pub.clear_output_callback = clearOutputCallback;
+        this._interpreter.display_pub.display_data_callback = displayDataCallback;
+        this._interpreter.display_pub.update_display_data_callback =
+            updateDisplayDataCallback;
+        this._interpreter.displayhook.publish_execution_result =
+            publishExecutionResult;
+        this._interpreter.input = this.input.bind(this);
+        this._interpreter.getpass = this.getpass.bind(this);
+        const res = await this._kernel.run(content.code);
+        const results = this.formatResult(res);
+        if (results['status'] === 'error') {
+            publishExecutionError(results['ename'], results['evalue'], results['traceback']);
+        }
+        return results;
+    }
+    /**
+     * Complete the code submitted by a user.
+     *
+     * @param content The incoming message with the code to complete.
+     */
+    async complete(content, parent) {
+        await this.setup(parent);
+        const res = this._kernel.complete(content.code, content.cursor_pos);
+        const results = this.formatResult(res);
+        return results;
+    }
+    /**
+     * Inspect the code submitted by a user.
+     *
+     * @param content The incoming message with the code to inspect.
+     */
+    async inspect(content, parent) {
+        await this.setup(parent);
+        const res = this._kernel.inspect(content.code, content.cursor_pos, content.detail_level);
+        const results = this.formatResult(res);
+        return results;
+    }
+    /**
+     * Check code for completeness submitted by a user.
+     *
+     * @param content The incoming message with the code to check.
+     */
+    async isComplete(content, parent) {
+        await this.setup(parent);
+        const res = this._kernel.is_complete(content.code);
+        const results = this.formatResult(res);
+        return results;
+    }
+    /**
+     * Respond to the commInfoRequest.
+     *
+     * @param content The incoming message with the comm target name.
+     */
+    async commInfo(content, parent) {
+        await this.setup(parent);
+        const res = this._kernel.comm_info(content.target_name);
+        const results = this.formatResult(res);
+        return {
+            comms: results,
+            status: 'ok',
+        };
+    }
+    /**
+     * Respond to the commOpen.
+     *
+     * @param content The incoming message with the comm open.
+     */
+    async commOpen(content, parent) {
+        await this.setup(parent);
+        const res = this._kernel.comm_manager.comm_open(this._pyodide.toPy(null), this._pyodide.toPy(null), this._pyodide.toPy(content));
+        const results = this.formatResult(res);
+        return results;
+    }
+    /**
+     * Respond to the commMsg.
+     *
+     * @param content The incoming message with the comm msg.
+     */
+    async commMsg(content, parent) {
+        await this.setup(parent);
+        const res = this._kernel.comm_manager.comm_msg(this._pyodide.toPy(null), this._pyodide.toPy(null), this._pyodide.toPy(content));
+        const results = this.formatResult(res);
+        return results;
+    }
+    /**
+     * Respond to the commClose.
+     *
+     * @param content The incoming message with the comm close.
+     */
+    async commClose(content, parent) {
+        await this.setup(parent);
+        const res = this._kernel.comm_manager.comm_close(this._pyodide.toPy(null), this._pyodide.toPy(null), this._pyodide.toPy(content));
+        const results = this.formatResult(res);
+        return results;
+    }
+    /**
+     * Resolve the input request by getting back the reply from the main thread
+     *
+     * @param content The incoming message with the reply
+     */
+    async inputReply(content, parent) {
+        await this.setup(parent);
+        this._resolveInputReply(content);
+    }
+    /**
+     * Send a input request to the front-end.
+     *
+     * @param prompt the text to show at the prompt
+     * @param password Is the request for a password?
+     */
+    async sendInputRequest(prompt, password) {
+        const content = {
+            prompt,
+            password,
+        };
+        this._sendWorkerMessage({
+            type: 'input_request',
+            parentHeader: this.formatResult(this._kernel._parent_header)['header'],
+            content,
+        });
+    }
+    async getpass(prompt) {
+        prompt = typeof prompt === 'undefined' ? '' : prompt;
+        await this.sendInputRequest(prompt, true);
+        const replyPromise = new Promise(resolve => {
+            this._resolveInputReply = resolve;
+        });
+        const result = await replyPromise;
+        return result['value'];
+    }
+    async input(prompt) {
+        prompt = typeof prompt === 'undefined' ? '' : prompt;
+        await this.sendInputRequest(prompt, false);
+        const replyPromise = new Promise(resolve => {
+            this._resolveInputReply = resolve;
+        });
+        const result = await replyPromise;
+        return result['value'];
+    }
+    /**
+     * Send a comm message to the front-end.
+     *
+     * @param type The type of the comm message.
+     * @param content The content.
+     * @param metadata The metadata.
+     * @param ident The ident.
+     * @param buffers The binary buffers.
+     */
+    async sendComm(type, content, metadata, ident, buffers) {
+        this._sendWorkerMessage({
+            type: type,
+            content: this.formatResult(content),
+            metadata: this.formatResult(metadata),
+            ident: this.formatResult(ident),
+            buffers: this.formatResult(buffers),
+            parentHeader: this.formatResult(this._kernel._parent_header)['header'],
+        });
+    }
+    /**
+     * Initialization options.
+     */
+    _options = null;
+    /**
+     * A promise that resolves when all initiaization is complete.
+     */
+    _initialized;
+    _initializer = null;
+    _pyodide = null;
+    /** TODO: real typing */
+    _localPath = '';
+    _driveName = '';
+    _kernel;
+    _interpreter;
+    _stdout_stream;
+    _stderr_stream;
+    _resolveInputReply;
+    _driveFS = null;
+    _sendWorkerMessage = () => { };
+}
+//# sourceMappingURL=worker.js.map

package/lib/jupyter/lite/pyodide-kernel/worker.js.map

@@ -0,0 +1 @@
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package/lib/jupyter/lite/pyodide-kernel-extension/index.d.ts

@@ -0,0 +1,4 @@
+import { JupyterLiteServerPlugin } from '../server';
+export * as KERNEL_SETTINGS_SCHEMA from '../../../../schema/kernel.v0.schema.json';
+declare const plugins: JupyterLiteServerPlugin<any>[];
+export default plugins;