@datagrok/sequence-translator 1.9.8 → 1.9.10
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/package-test.js +1 -1
- package/dist/package-test.js.map +1 -1
- package/dist/package.js +1 -1
- package/dist/package.js.map +1 -1
- package/package.json +4 -4
- package/src/demo/demo-st-ui.ts +4 -4
- package/src/package-api.ts +4 -4
- package/src/package.g.ts +195 -0
- package/src/package.ts +345 -273
- package/src/polytool/conversion/pt-rules.ts +4 -3
- package/src/polytool/conversion/rule-manager.ts +3 -3
- package/src/polytool/pt-enumerate-seq-dialog.ts +3 -3
- package/test-console-output-1.log +132 -131
- package/test-record-1.mp4 +0 -0
- package/tsconfig.json +2 -2
- package/webpack.config.js +5 -1
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@@ -2,7 +2,7 @@ import * as DG from 'datagrok-api/dg';
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import * as grok from 'datagrok-api/grok';
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import * as ui from 'datagrok-api/ui';
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import {getMonomerPairs, getRules, Rules} from './pt-rules';
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-
import {_package,
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+
import {_package, PackageFunctions} from '../../package';
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import {getHelmHelper} from '@datagrok-libraries/bio/src/helm/helm-helper';
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import {doPolyToolConvert} from './pt-conversion';
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import {NOTATION} from '@datagrok-libraries/bio/src/utils/macromolecule/consts';
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@@ -138,7 +138,7 @@ export class RulesManager {
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const initCol = DG.Column.fromStrings('Monomers', seqs);
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const helmCol = DG.Column.fromStrings('Helm', helms);
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-
applyNotationProviderForCyclized(initCol, '-');
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+
PackageFunctions.applyNotationProviderForCyclized(initCol, '-');
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initCol.semType = DG.SEMTYPE.MACROMOLECULE;
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helmCol.semType = DG.SEMTYPE.MACROMOLECULE;
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@@ -168,7 +168,7 @@ export class RulesManager {
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const helmCol = DG.Column.fromStrings('Helm', helms);
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initCol.semType = DG.SEMTYPE.MACROMOLECULE;
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-
applyNotationProviderForCyclized(initCol, '-');
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+
PackageFunctions.applyNotationProviderForCyclized(initCol, '-');
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helmCol.semType = DG.SEMTYPE.MACROMOLECULE;
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helmCol.meta.units = NOTATION.HELM;
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@@ -32,7 +32,7 @@ import {RuleInputs, RULES_PATH, RULES_STORAGE_NAME} from './conversion/pt-rules'
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import {Chain} from './conversion/pt-chain';
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import {polyToolConvert} from './pt-dialog';
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-
import {_package,
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+
import {_package, PackageFunctions} from '../package';
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import {buildMonomerHoverLink} from '@datagrok-libraries/bio/src/monomer-works/monomer-hover';
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import {getRdKitModule} from '@datagrok-libraries/bio/src/chem/rdkit-module';
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@@ -723,14 +723,14 @@ async function polyToolEnumerateSeq(
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enumCol = DG.Column.fromList(DG.COLUMN_TYPE.STRING, 'Enumerated', templateList);
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enumCol.semType = DG.SEMTYPE.MACROMOLECULE;
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enumCol.setTag(PolyToolTags.dataRole, PolyToolDataRole.template);
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applyNotationProviderForCyclized(enumCol, '-');
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PackageFunctions.applyNotationProviderForCyclized(enumCol, '-');
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break;
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}
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}
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const enumeratorResDf = DG.DataFrame.fromColumns([enumCol]);
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await grok.data.detectSemanticTypes(enumeratorResDf);
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if (dataRole == PolyToolDataRole.template)
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applyNotationProviderForCyclized(enumCol, '-');
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PackageFunctions.applyNotationProviderForCyclized(enumCol, '-');
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if (toAtomicLevel) {
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